AlfalfaGEDB | Msa0055190

M. sativa cultivar zhongmu-4 / Msa0055190

KEGG: K11251
GO: -
PFAM: PF00125.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055190	XP_003588709.2	100.000	134	0	0	1	134	1	134	1.10e-89	266

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055190	sp\|Q9C944\|H2AV3_ARATH	88.060	134	16	0	1	134	1	134	5.18e-75	222

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055190	G7I6D5	100.000	134	0	0	1	134	1	134	5.27e-90	266

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0055190	0.837276	5.720027e-57	-8.615850e-47
Msa0006920	Msa0055190	0.862840	3.810396e-64	-8.615850e-47
Msa0020410	Msa0055190	0.803003	4.288439e-49	-8.615850e-47
Msa0026130	Msa0055190	0.800467	1.421779e-48	-8.615850e-47
Msa0027230	Msa0055190	0.825726	4.005616e-54	-8.615850e-47
Msa0027260	Msa0055190	0.873096	1.915905e-67	-8.615850e-47
Msa0028420	Msa0055190	0.808241	3.410967e-50	-8.615850e-47
Msa0048180	Msa0055190	0.817178	3.772209e-52	-8.615850e-47
Msa0055180	Msa0055190	0.872616	2.773500e-67	-8.615850e-47
Msa0055190	Msa0056470	0.849744	2.655999e-60	-8.615850e-47
Msa0055190	Msa0074030	0.810832	9.473610e-51	-8.615850e-47
Msa0055190	Msa0075170	0.811323	7.416346e-51	-8.615850e-47
Msa0055190	Msa0075220	0.805901	1.067158e-49	-8.615850e-47
Msa0055190	Msa0077530	0.803433	3.494681e-49	-8.615850e-47
Msa0055190	Msa0090360	0.811814	5.798286e-51	-8.615850e-47
Msa0055190	Msa0094470	0.819848	9.361967e-53	-8.615850e-47
Msa0055190	Msa0100740	0.861632	8.949424e-64	-8.615850e-47
Msa0055190	Msa0114870	0.818589	1.811486e-52	-8.615850e-47
Msa0055190	Msa0122970	0.830584	2.704945e-55	-8.615850e-47
Msa0055190	Msa0128860	0.819570	1.083704e-52	-8.615850e-47
Msa0055190	Msa0140820	0.867096	1.760390e-65	-8.615850e-47
Msa0055190	Msa0140850	0.831531	1.583478e-55	-8.615850e-47
Msa0055190	Msa0148060	0.839165	1.864929e-57	-8.615850e-47
Msa0055190	Msa0149200	0.808283	3.342096e-50	-8.615850e-47
Msa0055190	Msa0168500	0.801713	7.906761e-49	-8.615850e-47
Msa0055190	Msa0171410	0.824639	7.238553e-54	-8.615850e-47
Msa0055190	Msa0174730	0.819462	1.146923e-52	-8.615850e-47
Msa0055190	Msa0184040	0.812825	3.489481e-51	-8.615850e-47
Msa0055190	Msa0188350	0.801345	9.408329e-49	-8.615850e-47
Msa0055190	Msa0189700	0.816762	4.679669e-52	-8.615850e-47
Msa0055190	Msa0199880	0.831927	1.264699e-55	-8.615850e-47
Msa0055190	Msa0220720	0.812573	3.961415e-51	-8.615850e-47
Msa0055190	Msa0229230	0.823949	1.051349e-53	-8.615850e-47
Msa0055190	Msa0231100	0.816843	4.485899e-52	-8.615850e-47
Msa0055190	Msa0231980	0.848260	6.866770e-60	-8.615850e-47
Msa0055190	Msa0232010	0.828797	7.362289e-55	-8.615850e-47
Msa0055190	Msa0232050	0.844942	5.531628e-59	-8.615850e-47
Msa0055190	Msa0232080	0.829252	5.712814e-55	-8.615850e-47
Msa0055190	Msa0262050	0.815291	9.965899e-52	-8.615850e-47
Msa0055190	Msa0262310	0.800441	1.438930e-48	-8.615850e-47
Msa0055190	Msa0270320	0.808312	3.295079e-50	-8.615850e-47
Msa0055190	Msa0280610	0.856072	4.118436e-62	-8.615850e-47
Msa0055190	Msa0302170	0.800889	1.166330e-48	-8.615850e-47
Msa0055190	Msa0309750	0.806464	8.120686e-50	-8.615850e-47
Msa0055190	Msa0337240	0.807144	5.835565e-50	-8.615850e-47
Msa0055190	Msa0339500	0.825524	4.473182e-54	-8.615850e-47
Msa0055190	Msa0364800	0.808440	3.093745e-50	-8.615850e-47
Msa0055190	Msa0366890	0.832811	7.639489e-56	-8.615850e-47
Msa0055190	Msa0369450	0.861958	7.114187e-64	-8.615850e-47
Msa0055190	Msa0376310	0.804419	2.180022e-49	-8.615850e-47
Msa0055190	Msa0380300	0.832087	1.154813e-55	-8.615850e-47
Msa0055190	Msa0385580	0.806701	7.238664e-50	-8.615850e-47
Msa0055190	Msa0395820	0.847755	9.461455e-60	-8.615850e-47
Msa0055190	Msa0414800	0.816083	6.639807e-52	-8.615850e-47
Msa0055190	Msa0436490	-0.805165	1.523106e-49	-8.615850e-47
Msa0055190	Msa0443390	0.801900	7.238553e-49	-8.615850e-47
Msa0055190	Msa0449210	0.803595	3.233870e-49	-8.615850e-47
Msa0055190	Msa0468330	0.823594	1.273369e-53	-8.615850e-47
Msa0055190	Msa0493410	0.829202	5.873256e-55	-8.615850e-47
Msa0055190	Msa0497210	0.817459	3.261873e-52	-8.615850e-47
Msa0055190	Msa0518390	0.811821	5.780014e-51	-8.615850e-47
Msa0055190	Msa0521050	0.821582	3.739008e-53	-8.615850e-47
Msa0055190	Msa0524500	0.830700	2.533576e-55	-8.615850e-47
Msa0055190	Msa0526540	0.804870	1.755360e-49	-8.615850e-47
Msa0055190	Msa0556060	0.843112	1.711828e-58	-8.615850e-47
Msa0055190	Msa0581110	0.845626	3.611937e-59	-8.615850e-47
Msa0055190	Msa0588360	0.871503	6.505562e-67	-8.615850e-47
Msa0055190	Msa0615580	0.807772	4.293941e-50	-8.615850e-47
Msa0055190	Msa0615710	0.816176	6.328964e-52	-8.615850e-47
Msa0055190	Msa0620880	0.861049	1.347638e-63	-8.615850e-47
Msa0055190	Msa0620890	0.806954	6.399675e-50	-8.615850e-47
Msa0055190	Msa0661300	0.859180	4.941920e-63	-8.615850e-47
Msa0055190	Msa0692840	0.804784	1.829186e-49	-8.615850e-47
Msa0055190	Msa0692940	0.803086	4.122034e-49	-8.615850e-47
Msa0055190	Msa0698780	0.830214	3.331428e-55	-8.615850e-47
Msa0055190	Msa0709500	0.819786	9.671392e-53	-8.615850e-47
Msa0055190	Msa0722020	0.806379	8.465263e-50	-8.615850e-47
Msa0055190	Msa0750880	0.814607	1.413758e-51	-8.615850e-47
Msa0055190	Msa0761940	0.806452	8.171853e-50	-8.615850e-47
Msa0055190	Msa0763020	0.802323	5.923331e-49	-8.615850e-47
Msa0055190	Msa0763070	0.803384	3.577114e-49	-8.615850e-47
Msa0055190	Msa0766740	0.801934	7.123005e-49	-8.615850e-47
Msa0055190	Msa0784200	0.801303	9.594493e-49	-8.615850e-47
Msa0055190	Msa0790850	0.810810	9.578060e-51	-8.615850e-47
Msa0055190	Msa0801110	0.801379	9.257209e-49	-8.615850e-47
Msa0055190	Msa0858770	0.814175	1.761482e-51	-8.615850e-47
Msa0055190	Msa0881290	0.817419	3.330157e-52	-8.615850e-47
Msa0055190	Msa0884410	-0.801433	9.026242e-49	-8.615850e-47
Msa0055190	Msa0902760	0.835407	1.708822e-56	-8.615850e-47
Msa0055190	Msa0931460	0.801173	1.020048e-48	-8.615850e-47
Msa0055190	Msa0953310	0.834796	2.436575e-56	-8.615850e-47
Msa0055190	Msa0968590	0.823244	1.537442e-53	-8.615850e-47
Msa0055190	Msa1006840	0.817690	2.893586e-52	-8.615850e-47
Msa0055190	Msa1013400	0.833908	4.069764e-56	-8.615850e-47
Msa0055190	Msa1019240	0.804584	2.013994e-49	-8.615850e-47
Msa0055190	Msa1019260	0.825779	3.890788e-54	-8.615850e-47
Msa0055190	Msa1066490	0.805789	1.126684e-49	-8.615850e-47
Msa0055190	Msa1077570	0.809270	2.055518e-50	-8.615850e-47
Msa0055190	Msa1078170	0.826825	2.193515e-54	-8.615850e-47
Msa0055190	Msa1081150	0.822070	2.883521e-53	-8.615850e-47
Msa0055190	Msa1081930	0.856936	2.296478e-62	-8.615850e-47
Msa0055190	Msa1093530	0.838728	2.420373e-57	-8.615850e-47
Msa0055190	Msa1093840	0.845912	3.020846e-59	-8.615850e-47
Msa0055190	Msa1104140	0.812803	3.527357e-51	-8.615850e-47
Msa0055190	Msa1104210	0.823534	1.315523e-53	-8.615850e-47
Msa0055190	Msa1106700	0.819268	1.269808e-52	-8.615850e-47
Msa0055190	Msa1125760	0.809211	2.116715e-50	-8.615850e-47
Msa0055190	Msa1126510	0.828524	8.568458e-55	-8.615850e-47
Msa0055190	Msa1126830	0.842785	2.092203e-58	-8.615850e-47
Msa0055190	Msa1148910	0.811643	6.317798e-51	-8.615850e-47
Msa0055190	Msa1160590	0.800980	1.117043e-48	-8.615850e-47
Msa0055190	Msa1165780	0.802929	4.442803e-49	-8.615850e-47
Msa0055190	Msa1165940	0.857651	1.411484e-62	-8.615850e-47
Msa0055190	Msa1166860	0.820247	7.585902e-53	-8.615850e-47
Msa0055190	Msa1171360	0.816476	5.421619e-52	-8.615850e-47
Msa0055190	Msa1218600	0.820322	7.291978e-53	-8.615850e-47
Msa0055190	Msa1251160	0.846900	1.623771e-59	-8.615850e-47
Msa0055190	Msa1254730	0.818259	2.152224e-52	-8.615850e-47
Msa0055190	Msa1257510	0.816411	5.606758e-52	-8.615850e-47
Msa0055190	Msa1265630	0.802054	6.729545e-49	-8.615850e-47
Msa0055190	Msa1343260	0.807995	3.849883e-50	-8.615850e-47
Msa0055190	Msa1353060	0.807716	4.411960e-50	-8.615850e-47
Msa0055190	Msa1363330	0.810488	1.124208e-50	-8.615850e-47
Msa0055190	Msa1366800	0.831157	1.956933e-55	-8.615850e-47
Msa0055190	Msa1367590	0.830558	2.745235e-55	-8.615850e-47
Msa0055190	Msa1368120	0.807498	4.907878e-50	-8.615850e-47
Msa0055190	Msa1376650	0.816642	4.977838e-52	-8.615850e-47
Msa0055190	Msa1379760	0.811738	6.025864e-51	-8.615850e-47
Msa0055190	Msa1386600	0.810757	9.837055e-51	-8.615850e-47
Msa0055190	Msa1394290	0.805207	1.491921e-49	-8.615850e-47
Msa0055190	Msa1433390	0.806165	9.392911e-50	-8.615850e-47
Msa0055190	Msa1446810	0.844801	6.036245e-59	-8.615850e-47
Msa0055190	Msa1451160	0.842681	2.228889e-58	-8.615850e-47
Msa0055190	Msa1457920	0.806614	7.552262e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055190	MtrunA17_Chr1g0148961	100.000	134	0	0	1	134	1	134	1.02e-93	266
Msa0055190	MtrunA17_Chr1g0148951	100.000	134	0	0	1	134	1	134	1.02e-93	266
Msa0055190	MtrunA17_Chr1g0184901	86.567	134	18	0	1	134	1	134	1.96e-73	215
Msa0055190	MtrunA17_Chr1g0211651	81.250	128	24	0	7	134	4	131	2.88e-71	209
Msa0055190	MtrunA17_Chr4g0024701	66.418	134	25	1	1	134	1	114	6.90e-47	147
Msa0055190	MtrunA17_Chr2g0319191	64.545	110	37	2	24	132	14	122	1.42e-40	132
Msa0055190	MtrunA17_Chr2g0319181	64.545	110	37	2	24	132	14	122	1.91e-40	131
Msa0055190	MtrunA17_Chr7g0268831	58.333	132	47	4	1	130	1	126	2.47e-40	131
Msa0055190	MtrunA17_Chr7g0273351	58.197	122	49	2	10	130	3	123	8.09e-40	130
Msa0055190	MtrunA17_Chr7g0273331	58.197	122	49	2	10	130	59	179	9.14e-39	129
Msa0055190	MtrunA17_Chr7g0259151	61.682	107	39	2	25	130	21	126	2.97e-38	126
Msa0055190	MtrunA17_Chr7g0272611	55.652	115	49	2	19	132	19	132	7.29e-37	123
Msa0055190	MtrunA17_Chr4g0031041	59.292	113	44	2	23	134	15	126	4.29e-36	121
Msa0055190	MtrunA17_Chr2g0327951	59.292	113	44	2	23	134	56	167	8.62e-36	121
Msa0055190	MtrunA17_Chr4g0035621	61.111	108	40	2	27	133	25	131	4.35e-35	118
Msa0055190	MtrunA17_Chr8g0379311	60.550	109	41	2	27	134	25	132	4.84e-35	118
Msa0055190	MtrunA17_Chr4g0032301	59.633	109	42	2	27	134	25	132	5.44e-35	118
Msa0055190	MtrunA17_Chr4g0031001	59.633	109	42	2	27	134	25	132	6.61e-35	118
Msa0055190	MtrunA17_Chr4g0031651	59.633	109	42	2	27	134	25	132	6.76e-35	118
Msa0055190	MtrunA17_Chr2g0327931	60.185	108	41	2	27	133	24	130	8.79e-35	118
Msa0055190	MtrunA17_Chr7g0273341	53.448	116	40	5	19	132	50	153	3.35e-28	101
Msa0055190	MtrunA17_Chr4g0031031	62.687	67	24	1	55	120	17	83	3.79e-20	79.3
Msa0055190	MtrunA17_Chr6g0449661	45.283	106	47	4	27	130	86	182	6.63e-19	78.6
Msa0055190	MtrunA17_Chr3g0119971	44.340	106	48	4	27	130	81	177	1.70e-18	77.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0055190	AT1G52740.1	88.060	134	16	0	1	134	1	134	5.27e-76	222
Msa0055190	AT3G54560.1	84.559	136	19	1	1	134	1	136	7.75e-72	211
Msa0055190	AT3G54560.2	84.559	136	19	1	1	134	1	136	7.75e-72	211
Msa0055190	AT2G38810.1	81.618	136	23	1	1	134	1	136	1.01e-71	211
Msa0055190	AT2G38810.4	81.618	136	23	1	1	134	1	136	1.01e-71	211
Msa0055190	AT2G38810.3	81.618	136	23	1	1	134	1	136	1.01e-71	211
Msa0055190	AT2G38810.2	81.618	136	23	1	1	134	1	136	1.01e-71	211
Msa0055190	AT4G13570.1	66.667	111	33	1	18	124	8	118	3.28e-45	143
Msa0055190	AT4G13570.2	75.556	90	22	0	35	124	35	124	3.59e-44	141
Msa0055190	AT4G27230.2	64.545	110	37	2	24	132	14	122	2.42e-40	131
Msa0055190	AT4G27230.1	64.545	110	37	2	24	132	14	122	2.42e-40	131
Msa0055190	AT5G54640.1	64.545	110	37	2	24	132	14	122	2.45e-40	131
Msa0055190	AT3G20670.1	65.741	108	35	2	24	130	14	120	6.89e-40	130
Msa0055190	AT1G08880.1	64.762	105	35	2	25	128	21	124	1.01e-39	130
Msa0055190	AT1G51060.1	63.636	110	38	2	24	132	14	122	1.11e-39	130
Msa0055190	AT1G54690.1	63.810	105	36	2	25	128	21	124	2.89e-39	129
Msa0055190	AT5G02560.1	61.947	113	41	2	23	134	21	132	1.19e-38	128
Msa0055190	AT5G27670.1	60.870	115	43	2	19	132	18	131	4.54e-37	124
Msa0055190	AT5G59870.1	61.261	111	41	2	23	132	21	130	3.64e-36	121
Msa0055190	AT5G02560.2	51.095	137	41	3	23	134	21	156	3.79e-33	115

Find 54 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTTGTCTTTGAGGTTTGC+TGG	0.259581	1_2:-10069795	None:intergenic
TCTTCTTGTCCTTGTCTTTG+AGG	0.316058	1_2:-10069803	None:intergenic
TTCCTCAAGAGCTGGTCTTC+AGG	0.343744	1_2:+10069839	Msa0055190:CDS
TATGAACATTCATTCCTTTG+AGG	0.376752	1_2:-10072670	None:intergenic
GGTGATAACAACTTTATTTG+TGG	0.407928	1_2:+10072740	Msa0055190:three_prime_UTR
CAATGGCACATGGAAGAGTT+GGG	0.442531	1_2:+10072427	Msa0055190:CDS
AGTTTATTCTGCCGCTATCC+TGG	0.451988	1_2:+10072461	Msa0055190:CDS
GTATTTAACTGCAGAGGTGT+TGG	0.470183	1_2:+10072485	Msa0055190:CDS
ACAATGGCACATGGAAGAGT+TGG	0.476378	1_2:+10072426	Msa0055190:CDS
GGAGCGAAGGGTTTGACAAC+CGG	0.477894	1_2:+10069765	Msa0055190:CDS
CTCATCAAAGGAACAATAGC+TGG	0.487626	1_2:+10072603	Msa0055190:CDS
TTGAAGTGCGAAAACATGTC+GGG	0.497395	1_2:+10069738	Msa0055190:exon
TGCATGTCTAGGATTTATGT+TGG	0.504995	1_2:+10072883	Msa0055190:three_prime_UTR
GGATAATTCGCTCCTTGCGT+TGG	0.505084	1_2:+10072761	Msa0055190:three_prime_UTR
ATAAGAGACTTGTGGATATG+AGG	0.507095	1_2:-10072639	None:intergenic
TGGTATGGTACTGCATGTCT+AGG	0.516636	1_2:+10072872	Msa0055190:three_prime_UTR
AGACGATGGATACGTCCGAC+AGG	0.539450	1_2:-10072390	None:intergenic
AACTGCAGAGGTGTTGGAGT+TGG	0.540859	1_2:+10072491	Msa0055190:CDS
AGCTCTTGAGGAACGAGATG+TGG	0.542232	1_2:-10069829	None:intergenic
AACCTGAAGACCAGCTCTTG+AGG	0.543571	1_2:-10069841	None:intergenic
ACATCTCGTTCCTCAAGAGC+TGG	0.546311	1_2:+10069831	Msa0055190:CDS
TAATTCTCTCTAATTAACGC+AGG	0.546344	1_2:+10072691	Msa0055190:three_prime_UTR
GCAGAGGTGTTGGAGTTGGC+TGG	0.558822	1_2:+10072495	Msa0055190:CDS
CAATGCAAGCAAGGATCTGA+AGG	0.565081	1_2:+10072518	Msa0055190:CDS
TGCGAAAACATGTCGGGGAA+AGG	0.567757	1_2:+10069744	Msa0055190:exon
CCTCTGCAGTTAAATACTCC+AGG	0.571308	1_2:-10072479	None:intergenic
GTTGGCTGGCAATGCAAGCA+AGG	0.571379	1_2:+10072509	Msa0055190:CDS
GAACTTGACACTCTCATCAA+AGG	0.571379	1_2:+10072591	Msa0055190:CDS
AAATTCAGATAATCTAAAGA+AGG	0.572497	1_2:-10072802	None:intergenic
ACTTGTTGATAAGAGACTTG+TGG	0.572936	1_2:-10072647	None:intergenic
TCAGATAATCTAAAGAAGGA+TGG	0.582849	1_2:-10072798	None:intergenic
TGTCAAGTTCTTCGTCTCCA+CGG	0.583078	1_2:-10072578	None:intergenic
ATAGCAAGCTGTAGATGTCT+CGG	0.584334	1_2:-10072555	None:intergenic
TCTTATCAACAAGTCCTCAA+AGG	0.584732	1_2:+10072656	Msa0055190:CDS
CATCTACAGCTTGCTATCCG+TGG	0.586408	1_2:+10072561	Msa0055190:CDS
TCCATCGTCTTCTGAAGTCA+AGG	0.589423	1_2:+10072403	Msa0055190:CDS
TTTGAAGTGCGAAAACATGT+CGG	0.591882	1_2:+10069737	Msa0055190:exon
CATGTCGGGGAAAGGAGCGA+AGG	0.599837	1_2:+10069752	Msa0055190:exon
AATTCTCTCTAATTAACGCA+GGG	0.600377	1_2:+10072692	Msa0055190:three_prime_UTR
GCTCTTGAGGAACGAGATGT+GGG	0.607406	1_2:-10069828	None:intergenic
AAAGGAACAATAGCTGGTGG+TGG	0.608922	1_2:+10072609	Msa0055190:CDS
AAGTCAAGGACAATGGCACA+TGG	0.622887	1_2:+10072417	Msa0055190:CDS
ATGTCGGGGAAAGGAGCGAA+GGG	0.624226	1_2:+10069753	Msa0055190:CDS
CCTGGAGTATTTAACTGCAG+AGG	0.624849	1_2:+10072479	Msa0055190:CDS
CAATCAATCAAACCAACGCA+AGG	0.626065	1_2:-10072773	None:intergenic
GACGATGGATACGTCCGACA+GGG	0.626692	1_2:-10072389	None:intergenic
TTCTACATACAGTTCCCTGT+CGG	0.628096	1_2:+10072375	Msa0055190:intron
ACCAGCAAACCTCAAAGACA+AGG	0.637885	1_2:+10069794	Msa0055190:CDS
AATGGCACATGGAAGAGTTG+GGG	0.645846	1_2:+10072428	Msa0055190:CDS
TGAAGTGCGAAAACATGTCG+GGG	0.649052	1_2:+10069739	Msa0055190:exon
TCTTCTGAAGTCAAGGACAA+TGG	0.655563	1_2:+10072410	Msa0055190:CDS
ATCAAAGGAACAATAGCTGG+TGG	0.661257	1_2:+10072606	Msa0055190:CDS
TCCTTGACTTCAGAAGACGA+TGG	0.668973	1_2:-10072404	None:intergenic
AGTTAAATACTCCAGGATAG+CGG	0.673071	1_2:-10072472	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATGTATTTTTTTGTTAAA+AGG	+	chr1_2:10070033-10070052	Msa0055190:intron	10.0%
!!!	TTTTTTTGTTAAAAGGATAA+TGG	+	chr1_2:10070040-10070059	Msa0055190:intron	15.0%
!!!	TTTTTTGTTAAAAGGATAAT+GGG	+	chr1_2:10070041-10070060	Msa0055190:intron	15.0%
!!	ACAAAAAGAATAGTAAAAAA+CGG	-	chr1_2:10070318-10070337	None:intergenic	15.0%
!!!	TTTATGATTTGTAATATCAA+TGG	+	chr1_2:10070651-10070670	Msa0055190:intron	15.0%
!!!	TTTTTTTGTTTGTTTTAAGT+AGG	+	chr1_2:10071380-10071399	Msa0055190:intron	15.0%
!!!	AGTATTATTTTATAACTGTT+TGG	+	chr1_2:10071822-10071841	Msa0055190:intron	15.0%
!!!	AAAGGATTTTAATGTAATTT+CGG	+	chr1_2:10072719-10072738	Msa0055190:three_prime_UTR	15.0%
!!!	AAAAATTGTAGTTTGAGATT+TGG	+	chr1_2:10070081-10070100	Msa0055190:intron	20.0%
!!!	AAAATTGTAGTTTGAGATTT+GGG	+	chr1_2:10070082-10070101	Msa0055190:intron	20.0%
!!!	TTTTTATCTAAGATGAAGTA+TGG	+	chr1_2:10070105-10070124	Msa0055190:intron	20.0%
!!!	TTTTATCTAAGATGAAGTAT+GGG	+	chr1_2:10070106-10070125	Msa0055190:intron	20.0%
!!!	TTTTTACCAAGATTGAAATT+TGG	+	chr1_2:10070145-10070164	Msa0055190:intron	20.0%
!!!	TTTTACCAAGATTGAAATTT+GGG	+	chr1_2:10070146-10070165	Msa0055190:intron	20.0%
!!	ATATATACACCTATTAAGAA+GGG	-	chr1_2:10070936-10070955	None:intergenic	20.0%
!!	AATATATACACCTATTAAGA+AGG	-	chr1_2:10070937-10070956	None:intergenic	20.0%
!!	ATATATTCAGTAATGCTAAA+TGG	+	chr1_2:10070950-10070969	Msa0055190:intron	20.0%
!!	ATTATAAAAGATAGTCCATT+CGG	-	chr1_2:10071007-10071026	None:intergenic	20.0%
!!	TGGAAAATGAAAAGATAATT+TGG	-	chr1_2:10071087-10071106	None:intergenic	20.0%
!!!	CTTCGATATTGATTAATTAA+TGG	-	chr1_2:10071268-10071287	None:intergenic	20.0%
!!	TTAATTAATCAATATCGAAG+TGG	+	chr1_2:10071268-10071287	Msa0055190:intron	20.0%
!!	TTATAGAATCATATGTGAAT+GGG	+	chr1_2:10071405-10071424	Msa0055190:intron	20.0%
!!	TATTGTATTTCTTTGATTCT+TGG	+	chr1_2:10072233-10072252	Msa0055190:intron	20.0%
!!	AAATTCAGATAATCTAAAGA+AGG	-	chr1_2:10072805-10072824	None:intergenic	20.0%
!!!	ATTTTTCTTCTCTTTTGATA+TGG	+	chr1_2:10072821-10072840	Msa0055190:three_prime_UTR	20.0%
!	AGTGAAAAAGGTTAAATTTG+AGG	-	chr1_2:10069929-10069948	None:intergenic	25.0%
!!	TTTATCTAAGATGAAGTATG+GGG	+	chr1_2:10070107-10070126	Msa0055190:intron	25.0%
!	CAGTGAAAAACTAATAACAT+GGG	-	chr1_2:10070225-10070244	None:intergenic	25.0%
!	TCAGTGAAAAACTAATAACA+TGG	-	chr1_2:10070226-10070245	None:intergenic	25.0%
!	CAGTTAAGCAAATTGTAAAT+GGG	-	chr1_2:10070249-10070268	None:intergenic	25.0%
!	TCAGTTAAGCAAATTGTAAA+TGG	-	chr1_2:10070250-10070269	None:intergenic	25.0%
!	AAAAGAATAGTAAAAAACGG+TGG	-	chr1_2:10070315-10070334	None:intergenic	25.0%
!!!	AATTACCTTGTTTTGTTTCA+TGG	+	chr1_2:10070347-10070366	Msa0055190:intron	25.0%
!	GAGAATTGAATAGTTGAATA+TGG	+	chr1_2:10070420-10070439	Msa0055190:intron	25.0%
!!!	GGATGTTCATTTTATTTCTT+TGG	+	chr1_2:10070553-10070572	Msa0055190:intron	25.0%
!	CAAAAGAAGAAATCAAATCA+TGG	-	chr1_2:10070598-10070617	None:intergenic	25.0%
!!	GCAATTCATTTTACAACTTA+AGG	-	chr1_2:10070690-10070709	None:intergenic	25.0%
!	AGAGAACATATGCAAAATAA+GGG	-	chr1_2:10070733-10070752	None:intergenic	25.0%
!	TTGTTTGAAAAACTTAGACA+AGG	-	chr1_2:10070767-10070786	None:intergenic	25.0%
!!!	TTTTCTTTTTTCGGGAAAAA+AGG	-	chr1_2:10070844-10070863	None:intergenic	25.0%
!	CTATTATTTCCCTTCTTAAT+AGG	+	chr1_2:10070924-10070943	Msa0055190:intron	25.0%
!!!	AAAAGATAATTTGGTGTAAG+GGG	-	chr1_2:10071078-10071097	None:intergenic	25.0%
!!!	GAAAAGATAATTTGGTGTAA+GGG	-	chr1_2:10071079-10071098	None:intergenic	25.0%
!!!	TGAAAAGATAATTTGGTGTA+AGG	-	chr1_2:10071080-10071099	None:intergenic	25.0%
!	CAAAAAAACAATCAATCCAT+TGG	-	chr1_2:10071368-10071387	None:intergenic	25.0%
!	GTTATAGAATCATATGTGAA+TGG	+	chr1_2:10071404-10071423	Msa0055190:intron	25.0%
!	TATAGAATCATATGTGAATG+GGG	+	chr1_2:10071406-10071425	Msa0055190:intron	25.0%
!!	AGTTATCACATAATCTTTTG+TGG	+	chr1_2:10071616-10071635	Msa0055190:intron	25.0%
!!	ACAGATTTTCACATATACAT+GGG	-	chr1_2:10071903-10071922	None:intergenic	25.0%
!!	AACAGATTTTCACATATACA+TGG	-	chr1_2:10071904-10071923	None:intergenic	25.0%
!	TTAGTAATCCAAAAACTAGA+AGG	-	chr1_2:10072033-10072052	None:intergenic	25.0%
!!!	TAGTTTTTGGATTACTAATG+TGG	+	chr1_2:10072035-10072054	Msa0055190:intron	25.0%
!	AAAAAGACAAAATCATCACA+CGG	-	chr1_2:10072184-10072203	None:intergenic	25.0%
	AAGAAAACGATGAAGAGAAA+GGG	-	chr1_2:10069886-10069905	None:intergenic	30.0%
	CCAAAACAAAAGAGTGAAAA+AGG	-	chr1_2:10069941-10069960	None:intergenic	30.0%
!!	CCTTTTTCACTCTTTTGTTT+TGG	+	chr1_2:10069938-10069957	Msa0055190:intron	30.0%
	GATTTATTGTGTCACATTGA+TGG	+	chr1_2:10070268-10070287	Msa0055190:intron	30.0%
	CTTTAGATTAAAGACGTCTT+CGG	-	chr1_2:10070512-10070531	None:intergenic	30.0%
!	ACGTCTTTAATCTAAAGTGT+TGG	+	chr1_2:10070515-10070534	Msa0055190:intron	30.0%
!!	TGTTGGTGCTACATTATTTA+TGG	+	chr1_2:10070532-10070551	Msa0055190:intron	30.0%
!!	AAATGAATTGCTCACTTTTG+AGG	+	chr1_2:10070699-10070718	Msa0055190:intron	30.0%
	CAGAGAACATATGCAAAATA+AGG	-	chr1_2:10070734-10070753	None:intergenic	30.0%
!	TATTTTGCATATGTTCTCTG+TGG	+	chr1_2:10070734-10070753	Msa0055190:intron	30.0%
!	ACTTGCGCATTTTCTTTTTT+CGG	-	chr1_2:10070853-10070872	None:intergenic	30.0%
	TGGATATTAGAAGGGATATA+GGG	+	chr1_2:10070881-10070900	Msa0055190:intron	30.0%
	AAGAAGGGAAATAATAGTTC+CGG	-	chr1_2:10070921-10070940	None:intergenic	30.0%
	GATTTCAATCCAATGATCAT+TGG	-	chr1_2:10071238-10071257	None:intergenic	30.0%
	TTAATCAATATCGAAGTGGT+TGG	+	chr1_2:10071272-10071291	Msa0055190:intron	30.0%
	TAATCAATATCGAAGTGGTT+GGG	+	chr1_2:10071273-10071292	Msa0055190:intron	30.0%
	TTGCAGTCAAGATTAGTAAT+TGG	+	chr1_2:10071326-10071345	Msa0055190:intron	30.0%
!	ATGGATTACATAAAACACAG+AGG	-	chr1_2:10072007-10072026	None:intergenic	30.0%
!!!	TCCATATTCCTTCTAGTTTT+TGG	+	chr1_2:10072022-10072041	Msa0055190:intron	30.0%
	TCCAAAAACTAGAAGGAATA+TGG	-	chr1_2:10072026-10072045	None:intergenic	30.0%
	GTAAATCATGTTGCATTTGT+TGG	+	chr1_2:10072300-10072319	Msa0055190:intron	30.0%
	ATTTATCCCACATCATAATC+TGG	+	chr1_2:10072333-10072352	Msa0055190:intron	30.0%
	ATGTAGAAAGATGTTCATGA+TGG	-	chr1_2:10072363-10072382	None:intergenic	30.0%
	TATGAACATTCATTCCTTTG+AGG	-	chr1_2:10072673-10072692	None:intergenic	30.0%
	TAATTCTCTCTAATTAACGC+AGG	+	chr1_2:10072691-10072710	Msa0055190:three_prime_UTR	30.0%
	AATTCTCTCTAATTAACGCA+GGG	+	chr1_2:10072692-10072711	Msa0055190:three_prime_UTR	30.0%
	TAATTAACGCAGGGAAAAAA+AGG	+	chr1_2:10072701-10072720	Msa0055190:three_prime_UTR	30.0%
!	GGTGATAACAACTTTATTTG+TGG	+	chr1_2:10072740-10072759	Msa0055190:three_prime_UTR	30.0%
	TCAGATAATCTAAAGAAGGA+TGG	-	chr1_2:10072801-10072820	None:intergenic	30.0%
!!	AACTAACATCTTCACTTTTG+TGG	+	chr1_2:10072852-10072871	Msa0055190:three_prime_UTR	30.0%
!!	TCTATCTGTTTTGAATTGCT+TGG	+	chr1_2:10072926-10072945	Msa0055190:three_prime_UTR	30.0%
!	TTTGAAGTGCGAAAACATGT+CGG	+	chr1_2:10069737-10069756	Msa0055190:exon	35.0%
	CAAGAAAACGATGAAGAGAA+AGG	-	chr1_2:10069887-10069906	None:intergenic	35.0%
	CACTTTAGCGATGTAACATA+AGG	-	chr1_2:10069987-10070006	None:intergenic	35.0%
	GTACACCCAAATTTCAATCT+TGG	-	chr1_2:10070154-10070173	None:intergenic	35.0%
	ATTCGCCATGAAACAAAACA+AGG	-	chr1_2:10070355-10070374	None:intergenic	35.0%
	TTGAATATGGTCACATGTGT+CGG	+	chr1_2:10070433-10070452	Msa0055190:intron	35.0%
!	CTTGCGCATTTTCTTTTTTC+GGG	-	chr1_2:10070852-10070871	None:intergenic	35.0%
	GAAAAAAGAAAATGCGCAAG+TGG	+	chr1_2:10070852-10070871	Msa0055190:intron	35.0%
	GTGGATATTAGAAGGGATAT+AGG	+	chr1_2:10070880-10070899	Msa0055190:intron	35.0%
	ATATTAGAAGGGATATAGGG+TGG	+	chr1_2:10070884-10070903	Msa0055190:intron	35.0%
	AGAAGGGAAATAATAGTTCC+GGG	-	chr1_2:10070920-10070939	None:intergenic	35.0%
	AAAAGATAGTCCATTCGGTT+TGG	-	chr1_2:10071002-10071021	None:intergenic	35.0%
	TAAAGCTTGTACAGTGTAAG+CGG	-	chr1_2:10071182-10071201	None:intergenic	35.0%
	CTGTCATAACCAATGATCAT+TGG	+	chr1_2:10071226-10071245	Msa0055190:intron	35.0%
!!!	TGTTTTAACTGTCAAGACCA+AGG	-	chr1_2:10071754-10071773	None:intergenic	35.0%
	ATGCTGTGTTCAATTAGACA+TGG	-	chr1_2:10071945-10071964	None:intergenic	35.0%
	TCTGCATTACTTATTCTGTG+CGG	+	chr1_2:10071971-10071990	Msa0055190:intron	35.0%
	CCACTTGCAAAAAATTCTAG+TGG	-	chr1_2:10072208-10072227	None:intergenic	35.0%
!!!	CCACTAGAATTTTTTGCAAG+TGG	+	chr1_2:10072205-10072224	Msa0055190:intron	35.0%
	AAGCATGCTAAAATGTTGTC+TGG	+	chr1_2:10072275-10072294	Msa0055190:intron	35.0%
	GGAAAACCAGATTATGATGT+GGG	-	chr1_2:10072342-10072361	None:intergenic	35.0%
	TGGAAAACCAGATTATGATG+TGG	-	chr1_2:10072343-10072362	None:intergenic	35.0%
	AGTTAAATACTCCAGGATAG+CGG	-	chr1_2:10072475-10072494	None:intergenic	35.0%
	ATAAGAGACTTGTGGATATG+AGG	-	chr1_2:10072642-10072661	None:intergenic	35.0%
!	ACTTGTTGATAAGAGACTTG+TGG	-	chr1_2:10072650-10072669	None:intergenic	35.0%
	TCTTATCAACAAGTCCTCAA+AGG	+	chr1_2:10072656-10072675	Msa0055190:CDS	35.0%
!!	ACATCTTCACTTTTGTGGTA+TGG	+	chr1_2:10072857-10072876	Msa0055190:three_prime_UTR	35.0%
!	TGCATGTCTAGGATTTATGT+TGG	+	chr1_2:10072883-10072902	Msa0055190:three_prime_UTR	35.0%
!!	TGTTTTGAATTGCTTGGCAA+TGG	+	chr1_2:10072932-10072951	Msa0055190:three_prime_UTR	35.0%
	GAGAGAGAGAGAGAGATATT+TGG	-	chr1_2:10069685-10069704	None:intergenic	40.0%
	TTGAAGTGCGAAAACATGTC+GGG	+	chr1_2:10069738-10069757	Msa0055190:exon	40.0%
	TCTTCTTGTCCTTGTCTTTG+AGG	-	chr1_2:10069806-10069825	None:intergenic	40.0%
	GATGAAGAGAAAGGGTAAGA+GGG	-	chr1_2:10069878-10069897	None:intergenic	40.0%
	AGATGAAGTATGGGGTAGAA+AGG	+	chr1_2:10070115-10070134	Msa0055190:intron	40.0%
!!	TGTCACATTGATGGTGTCTT+TGG	+	chr1_2:10070277-10070296	Msa0055190:intron	40.0%
!!	ACATTGATGGTGTCTTTGGA+AGG	+	chr1_2:10070281-10070300	Msa0055190:intron	40.0%
!!	CATTGATGGTGTCTTTGGAA+GGG	+	chr1_2:10070282-10070301	Msa0055190:intron	40.0%
!!	ATTGATGGTGTCTTTGGAAG+GGG	+	chr1_2:10070283-10070302	Msa0055190:intron	40.0%
!	CTTCGGTGTAAAACATGTGA+TGG	-	chr1_2:10070495-10070514	None:intergenic	40.0%
	TTGGACTTCTAACAGAGACT+AGG	+	chr1_2:10070572-10070591	Msa0055190:intron	40.0%
	CATATGTTCTCTGTGGTCAT+GGG	+	chr1_2:10070741-10070760	Msa0055190:intron	40.0%
	ATCCCTTCTAATATCCACCA+AGG	-	chr1_2:10070878-10070897	None:intergenic	40.0%
	TATTAGCTAACTATGCGGTG+TGG	-	chr1_2:10071107-10071126	None:intergenic	40.0%
	ACACCGCATAGTTAGCTAAT+AGG	+	chr1_2:10071106-10071125	Msa0055190:intron	40.0%
	CTGCCTATTAGCTAACTATG+CGG	-	chr1_2:10071112-10071131	None:intergenic	40.0%
	ATGACAGTGTGTGCTATCAA+GGG	-	chr1_2:10071213-10071232	None:intergenic	40.0%
	TATGACAGTGTGTGCTATCA+AGG	-	chr1_2:10071214-10071233	None:intergenic	40.0%
	CTTGACTGCAACGTAAAAGA+TGG	-	chr1_2:10071317-10071336	None:intergenic	40.0%
	ATGCTTCACTCTCAAACCAA+TGG	+	chr1_2:10071349-10071368	Msa0055190:intron	40.0%
	AGAATCATATGTGAATGGGG+TGG	+	chr1_2:10071409-10071428	Msa0055190:intron	40.0%
!	CATAATCTTTTGTGGTCCAG+TGG	+	chr1_2:10071624-10071643	Msa0055190:intron	40.0%
	CCAAAAAAGCAGATTACCAC+TGG	-	chr1_2:10071643-10071662	None:intergenic	40.0%
!!!	CCAGTGGTAATCTGCTTTTT+TGG	+	chr1_2:10071640-10071659	Msa0055190:intron	40.0%
!!!	CTGCTTTTTTGGTTCCTATG+AGG	+	chr1_2:10071651-10071670	Msa0055190:intron	40.0%
!!	AGCTTGGATGGTTTTTCAGA+GGG	-	chr1_2:10071850-10071869	None:intergenic	40.0%
	TGCTTCATCCACATGTGTTA+CGG	+	chr1_2:10072126-10072145	Msa0055190:intron	40.0%
	CCAAAGATAAGTCACTCACA+TGG	-	chr1_2:10072158-10072177	None:intergenic	40.0%
	CCATGTGAGTGACTTATCTT+TGG	+	chr1_2:10072155-10072174	Msa0055190:intron	40.0%
	TTCTACATACAGTTCCCTGT+CGG	+	chr1_2:10072375-10072394	Msa0055190:intron	40.0%
!!	TCTTCTGAAGTCAAGGACAA+TGG	+	chr1_2:10072410-10072429	Msa0055190:CDS	40.0%
!	GTATTTAACTGCAGAGGTGT+TGG	+	chr1_2:10072485-10072504	Msa0055190:CDS	40.0%
	ATAGCAAGCTGTAGATGTCT+CGG	-	chr1_2:10072558-10072577	None:intergenic	40.0%
	GAACTTGACACTCTCATCAA+AGG	+	chr1_2:10072591-10072610	Msa0055190:CDS	40.0%
	CTCATCAAAGGAACAATAGC+TGG	+	chr1_2:10072603-10072622	Msa0055190:CDS	40.0%
	ATCAAAGGAACAATAGCTGG+TGG	+	chr1_2:10072606-10072625	Msa0055190:CDS	40.0%
	CAATCAATCAAACCAACGCA+AGG	-	chr1_2:10072776-10072795	None:intergenic	40.0%
!	AATGCAAAGTCTTTTGCTGC+TGG	+	chr1_2:10072958-10072977	Msa0055190:three_prime_UTR	40.0%
	TGAAGTGCGAAAACATGTCG+GGG	+	chr1_2:10069739-10069758	Msa0055190:exon	45.0%
!!!	GAGGTTTGCTGGTGTTTTAC+CGG	-	chr1_2:10069787-10069806	None:intergenic	45.0%
	ACCAGCAAACCTCAAAGACA+AGG	+	chr1_2:10069794-10069813	Msa0055190:CDS	45.0%
!!	TCCTTGTCTTTGAGGTTTGC+TGG	-	chr1_2:10069798-10069817	None:intergenic	45.0%
	CGATGAAGAGAAAGGGTAAG+AGG	-	chr1_2:10069879-10069898	None:intergenic	45.0%
	GTTTCATGGCGAATGATACG+CGG	+	chr1_2:10070361-10070380	Msa0055190:intron	45.0%
	GCATATGTTCTCTGTGGTCA+TGG	+	chr1_2:10070740-10070759	Msa0055190:intron	45.0%
!	TGGCCTTGGTGGATATTAGA+AGG	+	chr1_2:10070872-10070891	Msa0055190:intron	45.0%
!	GGCCTTGGTGGATATTAGAA+GGG	+	chr1_2:10070873-10070892	Msa0055190:intron	45.0%
	GGGAAATAATAGTTCCGGGA+GGG	-	chr1_2:10070916-10070935	None:intergenic	45.0%
	AGGGAAATAATAGTTCCGGG+AGG	-	chr1_2:10070917-10070936	None:intergenic	45.0%
!	AAGCGGCGAGTTGTTGATAA+CGG	-	chr1_2:10071165-10071184	None:intergenic	45.0%
	TCAATATCGAAGTGGTTGGG+TGG	+	chr1_2:10071276-10071295	Msa0055190:intron	45.0%
	CAATATCGAAGTGGTTGGGT+GGG	+	chr1_2:10071277-10071296	Msa0055190:intron	45.0%
	AATATCGAAGTGGTTGGGTG+GGG	+	chr1_2:10071278-10071297	Msa0055190:intron	45.0%
!!	TGAATGGGGTGGATTAGTGT+GGG	+	chr1_2:10071420-10071439	Msa0055190:intron	45.0%
	ACTCGAGCTTCTATCCTCAT+AGG	-	chr1_2:10071668-10071687	None:intergenic	45.0%
	TGTTGATGTGAGTCGAACCT+TGG	+	chr1_2:10071734-10071753	Msa0055190:intron	45.0%
!!	CTTGGATGGTTTTTCAGAGG+GGG	-	chr1_2:10071848-10071867	None:intergenic	45.0%
!!	GCTTGGATGGTTTTTCAGAG+GGG	-	chr1_2:10071849-10071868	None:intergenic	45.0%
!!	GAGCTTGGATGGTTTTTCAG+AGG	-	chr1_2:10071851-10071870	None:intergenic	45.0%
	CACATTGCTCACCTTATCAG+TGG	-	chr1_2:10071876-10071895	None:intergenic	45.0%
!	TCATGTCAGGCTGCACTTTT+TGG	-	chr1_2:10072067-10072086	None:intergenic	45.0%
	AAAGTGCAGCCTGACATGAA+AGG	+	chr1_2:10072068-10072087	Msa0055190:intron	45.0%
	TGCAGCTTCTGGTAAGTCAT+CGG	+	chr1_2:10072092-10072111	Msa0055190:intron	45.0%
!!	TCCATCGTCTTCTGAAGTCA+AGG	+	chr1_2:10072403-10072422	Msa0055190:CDS	45.0%
	TCCTTGACTTCAGAAGACGA+TGG	-	chr1_2:10072407-10072426	None:intergenic	45.0%
	AAGTCAAGGACAATGGCACA+TGG	+	chr1_2:10072417-10072436	Msa0055190:CDS	45.0%
	ACAATGGCACATGGAAGAGT+TGG	+	chr1_2:10072426-10072445	Msa0055190:CDS	45.0%
	CAATGGCACATGGAAGAGTT+GGG	+	chr1_2:10072427-10072446	Msa0055190:CDS	45.0%
	AATGGCACATGGAAGAGTTG+GGG	+	chr1_2:10072428-10072447	Msa0055190:CDS	45.0%
	AGTTTATTCTGCCGCTATCC+TGG	+	chr1_2:10072461-10072480	Msa0055190:CDS	45.0%
	CCTCTGCAGTTAAATACTCC+AGG	-	chr1_2:10072482-10072501	None:intergenic	45.0%
!	CCTGGAGTATTTAACTGCAG+AGG	+	chr1_2:10072479-10072498	Msa0055190:CDS	45.0%
	CAATGCAAGCAAGGATCTGA+AGG	+	chr1_2:10072518-10072537	Msa0055190:CDS	45.0%
	TGTCAAGTTCTTCGTCTCCA+CGG	-	chr1_2:10072581-10072600	None:intergenic	45.0%
	AAAGGAACAATAGCTGGTGG+TGG	+	chr1_2:10072609-10072628	Msa0055190:CDS	45.0%
	TGGTATGGTACTGCATGTCT+AGG	+	chr1_2:10072872-10072891	Msa0055190:three_prime_UTR	45.0%
	TGCGAAAACATGTCGGGGAA+AGG	+	chr1_2:10069744-10069763	Msa0055190:exon	50.0%
	GCTCTTGAGGAACGAGATGT+GGG	-	chr1_2:10069831-10069850	None:intergenic	50.0%
	AGCTCTTGAGGAACGAGATG+TGG	-	chr1_2:10069832-10069851	None:intergenic	50.0%
	ACATCTCGTTCCTCAAGAGC+TGG	+	chr1_2:10069831-10069850	Msa0055190:CDS	50.0%
!!	TTCCTCAAGAGCTGGTCTTC+AGG	+	chr1_2:10069839-10069858	Msa0055190:CDS	50.0%
	AACCTGAAGACCAGCTCTTG+AGG	-	chr1_2:10069844-10069863	None:intergenic	50.0%
!!	ACATGTGTCGGTGTTGTGTC+AGG	+	chr1_2:10070445-10070464	Msa0055190:intron	50.0%
!!	CATGTGTCGGTGTTGTGTCA+GGG	+	chr1_2:10070446-10070465	Msa0055190:intron	50.0%
	AGAAAATGCGCAAGTGGCCT+TGG	+	chr1_2:10070858-10070877	Msa0055190:intron	50.0%
	TAATAGTTCCGGGAGGGCTA+TGG	-	chr1_2:10070910-10070929	None:intergenic	50.0%
!!	ATTCGGTTTGGCGCATTCGT+GGG	-	chr1_2:10070990-10071009	None:intergenic	50.0%
	CAGTGTGTGCTATCAAGGGA+TGG	-	chr1_2:10071209-10071228	None:intergenic	50.0%
	ATATCGAAGTGGTTGGGTGG+GGG	+	chr1_2:10071279-10071298	Msa0055190:intron	50.0%
!!	GTGAATGGGGTGGATTAGTG+TGG	+	chr1_2:10071419-10071438	Msa0055190:intron	50.0%
	TATCAGTGGCAGAGCTTGGA+TGG	-	chr1_2:10071862-10071881	None:intergenic	50.0%
	TCCAAGCTCTGCCACTGATA+AGG	+	chr1_2:10071862-10071881	Msa0055190:intron	50.0%
	ACCTTATCAGTGGCAGAGCT+TGG	-	chr1_2:10071866-10071885	None:intergenic	50.0%
	AAGCTGCAGCCTTTCATGTC+AGG	-	chr1_2:10072080-10072099	None:intergenic	50.0%
	ACATGAAAGGCTGCAGCTTC+TGG	+	chr1_2:10072081-10072100	Msa0055190:intron	50.0%
!!	AACTGCAGAGGTGTTGGAGT+TGG	+	chr1_2:10072491-10072510	Msa0055190:CDS	50.0%
!!	CATCTACAGCTTGCTATCCG+TGG	+	chr1_2:10072561-10072580	Msa0055190:CDS	50.0%
	GGATAATTCGCTCCTTGCGT+TGG	+	chr1_2:10072761-10072780	Msa0055190:three_prime_UTR	50.0%
	ATGTCGGGGAAAGGAGCGAA+GGG	+	chr1_2:10069753-10069772	Msa0055190:CDS	55.0%
	GGAGCGAAGGGTTTGACAAC+CGG	+	chr1_2:10069765-10069784	Msa0055190:CDS	55.0%
!!	TGTCGGTGTTGTGTCAGGGT+TGG	+	chr1_2:10070450-10070469	Msa0055190:intron	55.0%
!	AAATGCGCAAGTGGCCTTGG+TGG	+	chr1_2:10070861-10070880	Msa0055190:intron	55.0%
!!	TTCGGTTTGGCGCATTCGTG+GGG	-	chr1_2:10070989-10071008	None:intergenic	55.0%
!!	CATTCGGTTTGGCGCATTCG+TGG	-	chr1_2:10070991-10071010	None:intergenic	55.0%
	CACGAATGCGCCAAACCGAA+TGG	+	chr1_2:10070989-10071008	Msa0055190:intron	55.0%
!!	CGGCGAGTTGTTGATAACGG+TGG	-	chr1_2:10071162-10071181	None:intergenic	55.0%
	GGCTGTAGCCGTAACACATG+TGG	-	chr1_2:10072137-10072156	None:intergenic	55.0%
	GACGATGGATACGTCCGACA+GGG	-	chr1_2:10072392-10072411	None:intergenic	55.0%
	AGACGATGGATACGTCCGAC+AGG	-	chr1_2:10072393-10072412	None:intergenic	55.0%
	GTTGGCTGGCAATGCAAGCA+AGG	+	chr1_2:10072509-10072528	Msa0055190:CDS	55.0%
	CATGTCGGGGAAAGGAGCGA+AGG	+	chr1_2:10069752-10069771	Msa0055190:exon	60.0%
!!	TCGGTTTGGCGCATTCGTGG+GGG	-	chr1_2:10070988-10071007	None:intergenic	60.0%
!!	GCAGAGGTGTTGGAGTTGGC+TGG	+	chr1_2:10072495-10072514	Msa0055190:CDS	60.0%
	TAGGGTGGCCATAGCCCTCC+CGG	+	chr1_2:10070899-10070918	Msa0055190:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	10069682	10072988	10069682	ID=Msa0055190;Name=Msa0055190
chr1_2	mRNA	10069682	10072988	10069682	ID=Msa0055190-mRNA-1;Parent=Msa0055190;Name=Msa0055190-mRNA-1;_AED=0.27;_eAED=0.27;_QI=71\|1\|1\|1\|1\|1\|2\|305\|134
chr1_2	exon	10069682	10069860	10069682	ID=Msa0055190-mRNA-1:exon:3781;Parent=Msa0055190-mRNA-1
chr1_2	exon	10072387	10072988	10072387	ID=Msa0055190-mRNA-1:exon:3782;Parent=Msa0055190-mRNA-1
chr1_2	five_prime_UTR	10069682	10069752	10069682	ID=Msa0055190-mRNA-1:five_prime_utr;Parent=Msa0055190-mRNA-1
chr1_2	CDS	10069753	10069860	10069753	ID=Msa0055190-mRNA-1:cds;Parent=Msa0055190-mRNA-1
chr1_2	CDS	10072387	10072683	10072387	ID=Msa0055190-mRNA-1:cds;Parent=Msa0055190-mRNA-1
chr1_2	three_prime_UTR	10072684	10072988	10072684	ID=Msa0055190-mRNA-1:three_prime_utr;Parent=Msa0055190-mRNA-1

Gene Sequence

>Msa0055190

ATGTCGGGGAAAGGAGCGAAGGGTTTGACAACCGGTAAAACACCAGCAAACCTCAAAGACAAGGACAAGAAGAAACCCACATCTCGTTCCTCAAGAGCTGGTCTTCAGTTCCCTGTCGGACGTATCCATCGTCTTCTGAAGTCAAGGACAATGGCACATGGAAGAGTTGGGGCTACAGCTGCAGTTTATTCTGCCGCTATCCTGGAGTATTTAACTGCAGAGGTGTTGGAGTTGGCTGGCAATGCAAGCAAGGATCTGAAGGTGAAGCGTATTACACCGAGACATCTACAGCTTGCTATCCGTGGAGACGAAGAACTTGACACTCTCATCAAAGGAACAATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAGTCCTCAAAGGAATGA

Protein sequence

>Msa0055190

MSGKGAKGLTTGKTPANLKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*