AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689500 MtrunA17_Chr1g0147041 99.399 333 2 0 1 333 1 333 0.0 699
Msa0689500 MtrunA17_Chr3g0126851 90.390 333 23 2 1 333 1 324 0.0 606
Msa0689500 MtrunA17_Chr8g0346801 79.456 331 46 3 3 333 1 309 0.0 543
Msa0689500 MtrunA17_Chr7g0275701 78.361 305 50 4 30 333 34 323 8.40e-180 500
Msa0689500 MtrunA17_Chr3g0083571 83.333 258 43 0 62 319 47 304 2.98e-168 470
Msa0689500 MtrunA17_Chr8g0352701 76.208 269 60 1 55 319 36 304 4.14e-161 452
Msa0689500 MtrunA17_Chr7g0258941 75.281 267 66 0 52 318 43 309 4.20e-155 437
Msa0689500 MtrunA17_Chr1g0175721 70.103 291 80 1 36 319 19 309 2.60e-154 435
Msa0689500 MtrunA17_Chr4g0051351 26.695 236 158 7 45 279 76 297 5.70e-20 89.0
Msa0689500 MtrunA17_Chr5g0433631 31.928 166 107 3 69 234 34 193 1.28e-19 88.2
Msa0689500 MtrunA17_Chr7g0223111 27.273 220 149 5 58 276 26 235 2.40e-19 87.4
Msa0689500 MtrunA17_Chr5g0428191 33.094 139 91 2 68 205 11 148 8.63e-18 82.8
Msa0689500 MtrunA17_Chr5g0433541 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0689500 MtrunA17_Chr5g0433551 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0689500 MtrunA17_Chr5g0433411 25.670 261 177 7 52 311 17 261 3.17e-16 78.6
Msa0689500 MtrunA17_Chr5g0433661 31.544 149 97 2 48 193 25 171 4.80e-16 78.2
Msa0689500 MtrunA17_Chr5g0424971 29.861 144 95 4 58 200 8 146 1.39e-15 76.6
Msa0689500 MtrunA17_Chr1g0169381 35.345 116 72 2 68 183 11 123 3.60e-15 72.0
Msa0689500 MtrunA17_Chr5g0433531 32.768 177 103 5 63 234 6 171 4.86e-15 74.7
Msa0689500 MtrunA17_Chr2g0298951 33.628 113 70 2 84 193 9 119 3.56e-14 72.0
Msa0689500 MtrunA17_Chr7g0259431 37.000 100 61 1 84 183 9 106 2.44e-13 69.7
Msa0689500 MtrunA17_Chr5g0433521 30.128 156 93 5 84 234 23 167 4.47e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689500 AT3G61790.1 81.081 333 53 2 1 331 1 325 0.0 554
Msa0689500 AT4G27880.1 78.932 337 56 4 1 333 1 326 0.0 543
Msa0689500 AT3G58040.1 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0689500 AT3G58040.3 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0689500 AT2G41980.1 76.259 278 61 1 42 319 33 305 2.57e-160 450
Msa0689500 AT5G53360.1 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0689500 AT5G53360.3 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0689500 AT3G58040.2 63.889 216 60 3 10 222 14 214 1.98e-90 270
Msa0689500 AT5G53360.2 89.167 120 13 0 214 333 60 179 1.60e-78 238
Msa0689500 AT5G53360.2 57.692 52 14 1 33 84 16 59 2.08e-11 62.4
Msa0689500 AT3G13672.1 58.333 168 67 1 155 319 45 212 2.95e-71 221
Msa0689500 AT3G13672.2 50.769 195 66 2 155 319 45 239 1.16e-65 207
Msa0689500 AT5G37870.1 39.062 128 75 2 67 194 41 165 5.75e-25 102
Msa0689500 AT5G37930.1 34.595 185 111 3 11 187 45 227 1.49e-24 102
Msa0689500 AT5G37890.1 27.935 247 163 6 67 311 47 280 2.99e-22 95.1
Msa0689500 AT5G62800.1 26.667 255 159 7 67 311 39 275 6.98e-21 92.4
Msa0689500 AT5G62800.2 27.103 214 132 5 67 270 39 238 1.35e-20 90.9
Msa0689500 AT1G66660.2 40.179 112 65 1 67 178 102 211 3.68e-20 90.1
Msa0689500 AT1G66650.1 38.655 119 70 2 68 185 83 199 5.23e-20 89.7
Msa0689500 AT1G66620.1 35.878 131 80 2 55 183 26 154 5.80e-20 89.4
Msa0689500 AT1G66630.1 35.915 142 85 3 49 186 25 164 4.10e-19 86.7
Msa0689500 AT5G37910.1 35.537 121 76 1 67 187 34 152 5.04e-19 85.9
Msa0689500 AT1G66610.2 35.165 91 56 1 40 130 133 220 1.50e-13 69.7
Msa0689500 AT1G66610.2 40.299 67 40 0 67 133 52 118 2.39e-11 63.2
Msa0689500 AT1G66610.1 42.857 63 36 0 67 129 52 114 1.47e-11 65.1

Find 100 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGTATGGAAAGATTTC+TGG 0.159871 4_4:+56568508 None:intergenic
AACAATAATCATGGTGTTAT+TGG 0.169856 4_4:-56571619 Msa0689500:CDS
TGATAGGTATTTCATTGTTT+TGG 0.211856 4_4:-56567940 Msa0689500:intron
CCTCATAATTCAACGAAATA+TGG 0.309243 4_4:-56567710 Msa0689500:CDS
GTTGTGTAATAAACAAGATT+TGG 0.313626 4_4:-56567451 Msa0689500:three_prime_UTR
TGCTTCAGCTTGCTGTAGTA+TGG 0.315397 4_4:+56568496 None:intergenic
TAAGAGTCACAGGAAGAATA+TGG 0.339068 4_4:-56567648 Msa0689500:CDS
CGAAGGAATGCCATGTAAAC+TGG 0.349784 4_4:+56567871 None:intergenic
CATGGCATTCCTTCGTTTCA+TGG 0.350645 4_4:-56567863 Msa0689500:CDS
TCTCTCTCTTACCTAGTTTG+AGG 0.354784 4_4:+56572116 None:intergenic
AGCCTCGAGGTTGGGGCAAA+TGG 0.361379 4_4:-56567808 Msa0689500:CDS
ATAAAGCAAACCTGATGAAT+TGG 0.365377 4_4:+56571520 None:intergenic
CAAATGGAAGAAAACTCATT+TGG 0.371206 4_4:-56567792 Msa0689500:CDS
ACACATCAGCTGCAAAGATT+TGG 0.392931 4_4:+56567589 None:intergenic
ATACCTACAGCCTCGAGGTT+GGG 0.402306 4_4:-56567816 Msa0689500:CDS
GAAGATGAAGATTGTAATCA+TGG 0.408797 4_4:+56572007 None:intergenic
GGTTGTATTGTGAGAGAGAA+AGG 0.410368 4_4:+56572137 None:intergenic
TAATAAACAAGATTTGGAAC+TGG 0.421003 4_4:-56567445 Msa0689500:three_prime_UTR
AATGTATCCTCCAATTCATC+AGG 0.424313 4_4:-56571530 Msa0689500:intron
CCATATTTCGTTGAATTATG+AGG 0.425488 4_4:+56567710 None:intergenic
TAGGTGTCTGGCACTGGAAA+AGG 0.426106 4_4:-56568578 Msa0689500:CDS
TACATTGAATTGGTACAAAC+AGG 0.426249 4_4:+56571547 None:intergenic
CCATGCAAATACTACTCTCT+TGG 0.426909 4_4:-56568535 Msa0689500:CDS
TGTTTCTTCTTCTGATGGAA+TGG 0.427322 4_4:-56571737 Msa0689500:CDS
AGATATTAGGTGTCTGGCAC+TGG 0.427576 4_4:-56568584 Msa0689500:CDS
GGTATACAAACCCCACCATC+TGG 0.433787 4_4:+56567610 None:intergenic
GACAAGAGCTTGGAGATATT+AGG 0.446367 4_4:-56568597 Msa0689500:CDS
AATTGGAGGATACATTGAAT+TGG 0.448728 4_4:+56571537 None:intergenic
TTTCCTCGTTGCACATTTGA+GGG 0.453343 4_4:-56568398 Msa0689500:CDS
ATTTCCTCGTTGCACATTTG+AGG 0.454644 4_4:-56568399 Msa0689500:CDS
GAGTGTGTTTCTTCTTCTGA+TGG 0.455471 4_4:-56571742 Msa0689500:CDS
CAAAGTGAAGGCAGAAGTAT+TGG 0.460533 4_4:+56567917 None:intergenic
ACATTTGAGGGACGATCATA+AGG 0.461663 4_4:-56568386 Msa0689500:CDS
ATCTCCAAGCTCTTGTCTAC+AGG 0.469456 4_4:+56568603 None:intergenic
AAATGGAAGAAAACTCATTT+GGG 0.470132 4_4:-56567791 Msa0689500:CDS
CACTTTGAAGCTTTCCAGCT+AGG 0.473624 4_4:-56567901 Msa0689500:CDS
AAACTGGAGCCATGCCTAGC+TGG 0.474045 4_4:+56567887 None:intergenic
GCTTGGAGATATTAGGTGTC+TGG 0.474212 4_4:-56568590 Msa0689500:CDS
AAAATTGAAGAGAGAGGAAG+CGG 0.484028 4_4:-56571917 Msa0689500:five_prime_UTR
AAATTTCAAAGCCATCATCT+TGG 0.487024 4_4:+56567488 None:intergenic
ATGGCATTCCTTCGTTTCAT+GGG 0.491316 4_4:-56567862 Msa0689500:CDS
TACAAGTGTTCATGAGTTGT+TGG 0.494508 4_4:-56571575 Msa0689500:CDS
AAGAAGAAAATTGAAGAGAG+AGG 0.513631 4_4:-56571923 Msa0689500:five_prime_UTR
TCTTCATTGAAACCTCGTAA+TGG 0.515536 4_4:-56571646 Msa0689500:CDS
TCACAATACAACCTCAAACT+AGG 0.516991 4_4:-56572127 Msa0689500:five_prime_UTR
AATGGAGGAAACAATAATCA+TGG 0.519050 4_4:-56571628 Msa0689500:CDS
TACCTACAGCCTCGAGGTTG+GGG 0.519942 4_4:-56567815 Msa0689500:CDS
CAGTTCCTTCCTATCACCAC+CGG 0.520559 4_4:+56567675 None:intergenic
TAAAGATTAATAAAATTGAA+AGG 0.526678 4_4:+56572225 None:intergenic
CCATACACTTGTCCTTATGC+TGG 0.527298 4_4:-56568451 Msa0689500:CDS
GAACTGAAATTAAGAGTCAC+AGG 0.528820 4_4:-56567658 Msa0689500:CDS
AAGAAAATGAAAATAAGAGA+AGG 0.532624 4_4:+56571985 None:intergenic
AAGCAAACCTGATGAATTGG+AGG 0.534378 4_4:+56571523 None:intergenic
GAGCACTCTGATCCAGCATA+AGG 0.535134 4_4:+56568439 None:intergenic
AGGCATGGCTCCAGTTTACA+TGG 0.535252 4_4:-56567881 Msa0689500:CDS
CCAGCATAAGGACAAGTGTA+TGG 0.536800 4_4:+56568451 None:intergenic
AGAGTAAGACACCAAGATGA+TGG 0.543839 4_4:-56567499 Msa0689500:three_prime_UTR
TGATGATGTTGTTGATGATG+TGG 0.544739 4_4:+56571682 None:intergenic
TGAAGCTTTCCAGCTAGGCA+TGG 0.545484 4_4:-56567896 Msa0689500:CDS
TTTCTCCGGTGGTGATAGGA+AGG 0.551436 4_4:-56567680 Msa0689500:CDS
TATTACAACATACACAAAGT+TGG 0.551763 4_4:+56567521 None:intergenic
AACAACAGAATCCAGATGGT+GGG 0.552181 4_4:-56567621 Msa0689500:CDS
AATAAACAAGATTTGGAACT+GGG 0.555763 4_4:-56567444 Msa0689500:three_prime_UTR
GAGAAAGGAACAAGAACCGT+TGG 0.556027 4_4:+56572152 None:intergenic
TATACCTACAGCCTCGAGGT+TGG 0.558753 4_4:-56567817 Msa0689500:CDS
AACTCATGAACACTTGTAGC+AGG 0.562232 4_4:+56571580 None:intergenic
GGATCAGAGTGCTCTGCTGT+TGG 0.562708 4_4:-56568430 Msa0689500:CDS
CCGACCTGTAGACAAGAGCT+TGG 0.568050 4_4:-56568607 Msa0689500:CDS
GTGAAGTAGAGAATGCTACT+TGG 0.568738 4_4:-56568309 Msa0689500:CDS
TGGGAGACGAGAACGAGGCT+CGG 0.575368 4_4:-56567843 Msa0689500:CDS
TTCCATTTGCCCCAACCTCG+AGG 0.594074 4_4:+56567806 None:intergenic
AAGATGAAGATTGTAATCAT+GGG 0.595284 4_4:+56572008 None:intergenic
GTGGATGAAGAATACGATGT+TGG 0.600992 4_4:+56571701 None:intergenic
CCAAGAGAGTAGTATTTGCA+TGG 0.602573 4_4:+56568535 None:intergenic
TGGAAGAAAACTCATTTGGG+AGG 0.602668 4_4:-56567788 Msa0689500:CDS
TCATTGAAACCTCGTAATGG+AGG 0.608179 4_4:-56571643 Msa0689500:CDS
GAACAACAGAATCCAGATGG+TGG 0.613047 4_4:-56567622 Msa0689500:CDS
GCTGGAAAGCTTCAAAGTGA+AGG 0.613710 4_4:+56567905 None:intergenic
ACAACAGAATCCAGATGGTG+GGG 0.614888 4_4:-56567620 Msa0689500:CDS
GGAAGAAAACTCATTTGGGA+GGG 0.623722 4_4:-56567787 Msa0689500:CDS
CATAAGGTGGACATGCACAC+AGG 0.632218 4_4:-56568370 Msa0689500:CDS
AATAAATCATCATAATCCAA+CGG 0.635358 4_4:-56572168 Msa0689500:five_prime_UTR
TTTCATGGGAGACGAGAACG+AGG 0.636980 4_4:-56567848 Msa0689500:CDS
GATTTGACTTCACATAACGA+TGG 0.637615 4_4:+56568335 None:intergenic
TGTGTTCCACATGTAAAACA+AGG 0.639674 4_4:-56568645 Msa0689500:CDS
TGCCCCAACCTCGAGGCTGT+AGG 0.640496 4_4:+56567813 None:intergenic
AAAGAACAACAGAATCCAGA+TGG 0.642877 4_4:-56567625 Msa0689500:CDS
TTATTGTTTCCTCCATTACG+AGG 0.648247 4_4:+56571634 None:intergenic
AAAGTTCGAGATAGTCATGA+CGG 0.664593 4_4:-56567733 Msa0689500:CDS
CCAAGCTCTTGTCTACAGGT+CGG 0.665523 4_4:+56568607 None:intergenic
GCTTTCTTGCAGTGCCACAA+CGG 0.673342 4_4:-56568676 Msa0689500:intron
TCTCGTCTCCCATGAAACGA+AGG 0.676802 4_4:+56567854 None:intergenic
TGGCTATCGCGGATACTCCG+TGG 0.686071 4_4:+56567760 None:intergenic
TTTGAGGGACGATCATAAGG+TGG 0.697457 4_4:-56568383 Msa0689500:CDS
GTGTTCCACATGTAAAACAA+GGG 0.699010 4_4:-56568644 Msa0689500:CDS
GAACTATACCTACAGCCTCG+AGG 0.705784 4_4:-56567821 Msa0689500:CDS
CGTCCCTCAAATGTGCAACG+AGG 0.714067 4_4:+56568395 None:intergenic
GTAGCATTCTCTACTTCACG+CGG 0.721685 4_4:+56568313 None:intergenic
AACACAATGTGTGACCGTTG+TGG 0.724979 4_4:+56568662 None:intergenic
TCATTTGGGAGGGTACACCA+CGG 0.762771 4_4:-56567777 Msa0689500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGATTAATAAAATTGAA+AGG + chr4_4:56567421-56567440 None:intergenic 10.0%
!!! TTTTAGTTATTTTTTTAAAC+TGG - chr4_4:56570112-56570131 Msa0689500:intron 10.0%
!!! TTTAGTTATTTTTTTAAACT+GGG - chr4_4:56570113-56570132 Msa0689500:intron 10.0%
!! AATATAATAATACTAATAAG+AGG - chr4_4:56570483-56570502 Msa0689500:intron 10.0%
!!! TAATTTTTGATTTTGAAATC+TGG - chr4_4:56567818-56567837 Msa0689500:CDS 15.0%
!!! AATTTTTGATTTTGAAATCT+GGG - chr4_4:56567819-56567838 Msa0689500:CDS 15.0%
!!! TTGATTATTTTTTGTTACAA+TGG - chr4_4:56567864-56567883 Msa0689500:CDS 15.0%
!! TAATTCTATATTCATAAATC+AGG + chr4_4:56568369-56568388 None:intergenic 15.0%
!!! TTGTTTTATAGAGAAATATT+CGG - chr4_4:56568650-56568669 Msa0689500:CDS 15.0%
!! CATTACAATTCAAAATTAAT+GGG + chr4_4:56570555-56570574 None:intergenic 15.0%
!! AAAAAATAAAAAACTTTCCA+AGG + chr4_4:56570638-56570657 None:intergenic 15.0%
!! AATATTAAGTAAAATTCGAA+GGG + chr4_4:56570843-56570862 None:intergenic 15.0%
!! AAATATTAAGTAAAATTCGA+AGG + chr4_4:56570844-56570863 None:intergenic 15.0%
!! CAAAAAATCTATATTTGTAA+CGG + chr4_4:56571430-56571449 None:intergenic 15.0%
!!! TTGTCTCAAATTTTTTATTA+TGG - chr4_4:56572224-56572243 Msa0689500:five_prime_UTR 15.0%
!!! TGTCTCAAATTTTTTATTAT+GGG - chr4_4:56572225-56572244 Msa0689500:five_prime_UTR 15.0%
!! AATAAATCATCATAATCCAA+CGG - chr4_4:56567475-56567494 Msa0689500:three_prime_UTR 20.0%
!! AAGAAAATGAAAATAAGAGA+AGG + chr4_4:56567661-56567680 None:intergenic 20.0%
!!! TTTCTTCGTTTTTTTTTTCT+GGG + chr4_4:56567699-56567718 None:intergenic 20.0%
!!! TTTTCTTCGTTTTTTTTTTC+TGG + chr4_4:56567700-56567719 None:intergenic 20.0%
!!! AAATTTTCGATTTTGAAATC+TGG - chr4_4:56567787-56567806 Msa0689500:CDS 20.0%
!!! AATTTTCGATTTTGAAATCT+GGG - chr4_4:56567788-56567807 Msa0689500:CDS 20.0%
!!! ATTTTTTGTTACAATGGATT+TGG - chr4_4:56567870-56567889 Msa0689500:CDS 20.0%
!! ATGAATATAGAATTAGTGAA+AGG - chr4_4:56568374-56568393 Msa0689500:CDS 20.0%
!! TTACTTATATTTGTAAGGTT+AGG - chr4_4:56568576-56568595 Msa0689500:CDS 20.0%
!!! TGTTTTATAGAGAAATATTC+GGG - chr4_4:56568651-56568670 Msa0689500:CDS 20.0%
!!! GCTTAAAATTTTAATAGTGT+TGG - chr4_4:56569094-56569113 Msa0689500:intron 20.0%
!! AATGCAATTTATATAGAGAA+TGG - chr4_4:56569943-56569962 Msa0689500:intron 20.0%
!! TACAACAATTAATCACAAAT+TGG - chr4_4:56570031-56570050 Msa0689500:intron 20.0%
!! ACAACAATTAATCACAAATT+GGG - chr4_4:56570032-56570051 Msa0689500:intron 20.0%
!! TTATTGAATAAAGAAGGAAT+CGG + chr4_4:56570435-56570454 None:intergenic 20.0%
!! GCATTACAATTCAAAATTAA+TGG + chr4_4:56570556-56570575 None:intergenic 20.0%
!! ATTAGTTAAATAGAGACTAT+TGG + chr4_4:56570607-56570626 None:intergenic 20.0%
!! AATAGTCTCTATTTAACTAA+TGG - chr4_4:56570606-56570625 Msa0689500:intron 20.0%
!! AATACCTATCAAAGAAAAAA+TGG + chr4_4:56571694-56571713 None:intergenic 20.0%
!!! TTTTTATTATGGGATTAAAG+TGG - chr4_4:56572235-56572254 Msa0689500:five_prime_UTR 20.0%
! AAGATGAAGATTGTAATCAT+GGG + chr4_4:56567638-56567657 None:intergenic 25.0%
!!! ATTTCGACGTTTTTTTATCT+AGG + chr4_4:56567771-56567790 None:intergenic 25.0%
!!! GTATGTTCTAGTTTTTGATT+TGG - chr4_4:56567841-56567860 Msa0689500:CDS 25.0%
!!! AACAATAATCATGGTGTTAT+TGG - chr4_4:56568024-56568043 Msa0689500:intron 25.0%
!!! TAGTGTTATTGAGTTGATTT+GGG - chr4_4:56568256-56568275 Msa0689500:intron 25.0%
! TTAAGCTTCCACTAATAATT+TGG - chr4_4:56568476-56568495 Msa0689500:CDS 25.0%
! AGTCGTTACTTATATTTGTA+AGG - chr4_4:56568571-56568590 Msa0689500:CDS 25.0%
! TATATTTGTAAGGTTAGGTT+TGG - chr4_4:56568581-56568600 Msa0689500:CDS 25.0%
!! TGAACTATGTGACAAAATTT+TGG - chr4_4:56568831-56568850 Msa0689500:intron 25.0%
! ATGAAGTAATCTAATGGTAA+CGG + chr4_4:56569446-56569465 None:intergenic 25.0%
! AACAATGTGTAGTAAAATGT+GGG + chr4_4:56569650-56569669 None:intergenic 25.0%
! AAACAATGTGTAGTAAAATG+TGG + chr4_4:56569651-56569670 None:intergenic 25.0%
! CAAATTCCCTCAAATATATT+GGG + chr4_4:56569899-56569918 None:intergenic 25.0%
! ACAAATTCCCTCAAATATAT+TGG + chr4_4:56569900-56569919 None:intergenic 25.0%
! AATTTCTTGAATACTGATCT+TGG - chr4_4:56569966-56569985 Msa0689500:intron 25.0%
!! ATTATTTCGGTGAAATTTTG+TGG - chr4_4:56570078-56570097 Msa0689500:intron 25.0%
! AATGTGAAAATAAACCTTAC+TGG + chr4_4:56570707-56570726 None:intergenic 25.0%
!! TTTTATTGATCTTTTAGCGA+TGG - chr4_4:56570783-56570802 Msa0689500:intron 25.0%
!! TTTATTGATCTTTTAGCGAT+GGG - chr4_4:56570784-56570803 Msa0689500:intron 25.0%
!! TAATGTGCAACTTTGTATTT+TGG - chr4_4:56571492-56571511 Msa0689500:intron 25.0%
! ATCAAAGAAAAAATGGAAGT+TGG + chr4_4:56571687-56571706 None:intergenic 25.0%
!!! ACTTCCATTTTTTCTTTGAT+AGG - chr4_4:56571687-56571706 Msa0689500:CDS 25.0%
!! TGATAGGTATTTCATTGTTT+TGG - chr4_4:56571703-56571722 Msa0689500:CDS 25.0%
! AAATGGAAGAAAACTCATTT+GGG - chr4_4:56571852-56571871 Msa0689500:five_prime_UTR 25.0%
! TATTACAACATACACAAAGT+TGG + chr4_4:56572125-56572144 None:intergenic 25.0%
! GTTGTGTAATAAACAAGATT+TGG - chr4_4:56572192-56572211 Msa0689500:five_prime_UTR 25.0%
!! TAATAAACAAGATTTGGAAC+TGG - chr4_4:56572198-56572217 Msa0689500:five_prime_UTR 25.0%
!! AATAAACAAGATTTGGAACT+GGG - chr4_4:56572199-56572218 Msa0689500:five_prime_UTR 25.0%
GAAGATGAAGATTGTAATCA+TGG + chr4_4:56567639-56567658 None:intergenic 30.0%
AAGAAGAAAATTGAAGAGAG+AGG - chr4_4:56567720-56567739 Msa0689500:CDS 30.0%
AATGGAGGAAACAATAATCA+TGG - chr4_4:56568015-56568034 Msa0689500:intron 30.0%
TACATTGAATTGGTACAAAC+AGG + chr4_4:56568099-56568118 None:intergenic 30.0%
AATTGGAGGATACATTGAAT+TGG + chr4_4:56568109-56568128 None:intergenic 30.0%
ATAAAGCAAACCTGATGAAT+TGG + chr4_4:56568126-56568145 None:intergenic 30.0%
TATGTGATTGATTGCATGTT+AGG - chr4_4:56568183-56568202 Msa0689500:intron 30.0%
ATGTGATTGATTGCATGTTA+GGG - chr4_4:56568184-56568203 Msa0689500:intron 30.0%
!!! ATGTTAGGGTTGTTTTTGTA+TGG - chr4_4:56568198-56568217 Msa0689500:intron 30.0%
!! TATGGTTATTGTGACTTGTT+TGG - chr4_4:56568216-56568235 Msa0689500:intron 30.0%
!! GTAGTGTTATTGAGTTGATT+TGG - chr4_4:56568255-56568274 Msa0689500:intron 30.0%
!! AGTGTTATTGAGTTGATTTG+GGG - chr4_4:56568257-56568276 Msa0689500:intron 30.0%
TAAACCTCAAAACCAAATTC+AGG + chr4_4:56568302-56568321 None:intergenic 30.0%
TATTGTGTAATTAGCAAGCT+AGG - chr4_4:56568325-56568344 Msa0689500:CDS 30.0%
! TGTTCTTAGAGTTTTCGTTT+AGG - chr4_4:56568411-56568430 Msa0689500:CDS 30.0%
CGAAAAGTCCAAATTATTAG+TGG + chr4_4:56568487-56568506 None:intergenic 30.0%
ATGCTTAATCAGTGCATTTA+AGG - chr4_4:56568508-56568527 Msa0689500:CDS 30.0%
!! TTAGGTTTGGATTTTAGTCA+AGG - chr4_4:56568594-56568613 Msa0689500:CDS 30.0%
CTATAAAACAAACGTCAGTT+TGG + chr4_4:56568641-56568660 None:intergenic 30.0%
ACAATTGAAAATTGATCAGC+TGG - chr4_4:56568719-56568738 Msa0689500:intron 30.0%
AGTCTGATCTTTATTGAACT+AGG + chr4_4:56568763-56568782 None:intergenic 30.0%
GTTCAATAAAGATCAGACTT+CGG - chr4_4:56568764-56568783 Msa0689500:intron 30.0%
ACATAAGTTGTAGCTAATCT+CGG - chr4_4:56568900-56568919 Msa0689500:intron 30.0%
!! GAGCATTTTAACAAGCTATA+CGG + chr4_4:56568928-56568947 None:intergenic 30.0%
CCAAAGCAATACATCTAAAA+TGG + chr4_4:56569025-56569044 None:intergenic 30.0%
! CCATTTTAGATGTATTGCTT+TGG - chr4_4:56569022-56569041 Msa0689500:intron 30.0%
TTAGATGTATTGCTTTGGTT+TGG - chr4_4:56569027-56569046 Msa0689500:intron 30.0%
! TAGATGTATTGCTTTGGTTT+GGG - chr4_4:56569028-56569047 Msa0689500:intron 30.0%
!! TGGATAAAGGCACTAAAAAA+TGG + chr4_4:56569283-56569302 None:intergenic 30.0%
TGAAGTAATCTAATGGTAAC+GGG + chr4_4:56569445-56569464 None:intergenic 30.0%
GAATGCATGAAGTAATCTAA+TGG + chr4_4:56569452-56569471 None:intergenic 30.0%
GGTTAAAAAAAAACCAGAAG+CGG + chr4_4:56569557-56569576 None:intergenic 30.0%
TAACAAAAACAATGGCTAGA+AGG + chr4_4:56569622-56569641 None:intergenic 30.0%
TTCACCATGGTATTCAAAAT+CGG - chr4_4:56569706-56569725 Msa0689500:intron 30.0%
! CTTAGAATCGTACACTTTTA+CGG - chr4_4:56569738-56569757 Msa0689500:intron 30.0%
ACACAACCCAATATATTTGA+GGG - chr4_4:56569890-56569909 Msa0689500:intron 30.0%
TAATGTTCATTGTATTGGGA+AGG - chr4_4:56570007-56570026 Msa0689500:intron 30.0%
AAATAATTGCTGTAAATGGC+TGG + chr4_4:56570065-56570084 None:intergenic 30.0%
GCCATTTACAGCAATTATTT+CGG - chr4_4:56570065-56570084 Msa0689500:intron 30.0%
ACCGAAATAATTGCTGTAAA+TGG + chr4_4:56570069-56570088 None:intergenic 30.0%
TTACGAATTATGATTCTGCT+TGG - chr4_4:56570245-56570264 Msa0689500:intron 30.0%
TCTCCAATTTAATATCCAGT+GGG - chr4_4:56570382-56570401 Msa0689500:intron 30.0%
TTTCCCACTGGATATTAAAT+TGG + chr4_4:56570388-56570407 None:intergenic 30.0%
CGACAGTTATTGAATAAAGA+AGG + chr4_4:56570441-56570460 None:intergenic 30.0%
ATAAGAGGTCTAACAGATTT+CGG - chr4_4:56570498-56570517 Msa0689500:intron 30.0%
AAAATAACAAATCGTACGAG+AGG + chr4_4:56570531-56570550 None:intergenic 30.0%
TATTAAGGGAGTAATGTATG+TGG - chr4_4:56570657-56570676 Msa0689500:intron 30.0%
!! GCTTAGTTCTTTTCTCTAAT+TGG - chr4_4:56570735-56570754 Msa0689500:intron 30.0%
! TTATTGATCTTTTAGCGATG+GGG - chr4_4:56570785-56570804 Msa0689500:intron 30.0%
CAAATGGAAGAAAACTCATT+TGG - chr4_4:56571851-56571870 Msa0689500:five_prime_UTR 30.0%
CCATATTTCGTTGAATTATG+AGG + chr4_4:56571936-56571955 None:intergenic 30.0%
CCTCATAATTCAACGAAATA+TGG - chr4_4:56571933-56571952 Msa0689500:five_prime_UTR 30.0%
AAATTTCAAAGCCATCATCT+TGG + chr4_4:56572158-56572177 None:intergenic 30.0%
TCACAATACAACCTCAAACT+AGG - chr4_4:56567516-56567535 Msa0689500:three_prime_UTR 35.0%
AAAATTGAAGAGAGAGGAAG+CGG - chr4_4:56567726-56567745 Msa0689500:CDS 35.0%
TGTTTCTTCTTCTGATGGAA+TGG - chr4_4:56567906-56567925 Msa0689500:CDS 35.0%
!! TGATGATGTTGTTGATGATG+TGG + chr4_4:56567964-56567983 None:intergenic 35.0%
TCTTCATTGAAACCTCGTAA+TGG - chr4_4:56567997-56568016 Msa0689500:intron 35.0%
TTATTGTTTCCTCCATTACG+AGG + chr4_4:56568012-56568031 None:intergenic 35.0%
TACAAGTGTTCATGAGTTGT+TGG - chr4_4:56568068-56568087 Msa0689500:intron 35.0%
AATGTATCCTCCAATTCATC+AGG - chr4_4:56568113-56568132 Msa0689500:intron 35.0%
!!! ATGTCCTGAATTTGGTTTTG+AGG - chr4_4:56568295-56568314 Msa0689500:intron 35.0%
AATCAGTGCATTTAAGGAAC+TGG - chr4_4:56568514-56568533 Msa0689500:CDS 35.0%
! CCATTGCGAGCATTTTTATA+AGG + chr4_4:56568550-56568569 None:intergenic 35.0%
CCTTATAAAAATGCTCGCAA+TGG - chr4_4:56568547-56568566 Msa0689500:CDS 35.0%
ATAGAGAAATATTCGGGCAA+AGG - chr4_4:56568657-56568676 Msa0689500:CDS 35.0%
!! TGTGACAAAATTTTGGCAAG+TGG - chr4_4:56568838-56568857 Msa0689500:intron 35.0%
!! ATAGCTTGTTAAAATGCTCC+AGG - chr4_4:56568929-56568948 Msa0689500:intron 35.0%
!!! ACTCTAAAGCATTTTCAACC+TGG + chr4_4:56568950-56568969 None:intergenic 35.0%
AGTTGTAGCATGTCTTTAGT+AGG - chr4_4:56568967-56568986 Msa0689500:intron 35.0%
GTTGTAGCATGTCTTTAGTA+GGG - chr4_4:56568968-56568987 Msa0689500:intron 35.0%
AATGGTCATGACATGACATA+TGG + chr4_4:56569007-56569026 None:intergenic 35.0%
!! AATAGTGTTGGTTATTGACC+TGG - chr4_4:56569106-56569125 Msa0689500:intron 35.0%
! GTCAAAAAGGCTTTAATACC+AGG + chr4_4:56569127-56569146 None:intergenic 35.0%
CTGAAACATTGAGAGCAATA+AGG + chr4_4:56569170-56569189 None:intergenic 35.0%
AAAGATTGTGCTGTGGATAA+AGG + chr4_4:56569296-56569315 None:intergenic 35.0%
TGTCATAAAAGATTGTGCTG+TGG + chr4_4:56569303-56569322 None:intergenic 35.0%
! GCACAATCTTTTATGACAGT+TGG - chr4_4:56569305-56569324 Msa0689500:intron 35.0%
!! AATCTAATGGTAACGGGTTT+AGG + chr4_4:56569439-56569458 None:intergenic 35.0%
GGGAACAGTAACAAAAACAA+TGG + chr4_4:56569630-56569649 None:intergenic 35.0%
! TAACAACACACTTTTCACCA+TGG - chr4_4:56569693-56569712 Msa0689500:intron 35.0%
!! AATCGTAATTTGCTAGCAGA+CGG - chr4_4:56569796-56569815 Msa0689500:intron 35.0%
CACACAACCCAATATATTTG+AGG - chr4_4:56569889-56569908 Msa0689500:intron 35.0%
! ATCTTGGAGAAGTATGACTT+TGG - chr4_4:56569982-56570001 Msa0689500:intron 35.0%
! TCTTGGAGAAGTATGACTTT+GGG - chr4_4:56569983-56570002 Msa0689500:intron 35.0%
TGGGCTAATGTTCATTGTAT+TGG - chr4_4:56570002-56570021 Msa0689500:intron 35.0%
GGGCTAATGTTCATTGTATT+GGG - chr4_4:56570003-56570022 Msa0689500:intron 35.0%
GTTGTGTTATGTGTTGGAAT+CGG + chr4_4:56570204-56570223 None:intergenic 35.0%
CTCTCCAATTTAATATCCAG+TGG - chr4_4:56570381-56570400 Msa0689500:intron 35.0%
TGAATAAAGAAGGAATCGGA+AGG + chr4_4:56570431-56570450 None:intergenic 35.0%
!!! ATGCTTTGTTTTATGTCCTC+TGG - chr4_4:56570572-56570591 Msa0689500:intron 35.0%
TTAACTAATGGTTGCTACCT+TGG - chr4_4:56570618-56570637 Msa0689500:intron 35.0%
AACATGAAGTAGTACCAGTA+AGG - chr4_4:56570690-56570709 Msa0689500:intron 35.0%
ACTTAGGAAGATGTCAAATG+AGG + chr4_4:56570896-56570915 None:intergenic 35.0%
!! AATCATGCTAATGTCGACTT+AGG + chr4_4:56570912-56570931 None:intergenic 35.0%
TGTGTTCCACATGTAAAACA+AGG - chr4_4:56570998-56571017 Msa0689500:intron 35.0%
GTGTTCCACATGTAAAACAA+GGG - chr4_4:56570999-56571018 Msa0689500:intron 35.0%
CTGTAGTATGGAAAGATTTC+TGG + chr4_4:56571138-56571157 None:intergenic 35.0%
! GATTTGACTTCACATAACGA+TGG + chr4_4:56571311-56571330 None:intergenic 35.0%
ACTGTCAGATCAAGATCAAA+TGG + chr4_4:56571546-56571565 None:intergenic 35.0%
! CATGACTATCTCGAACTTTT+CGG + chr4_4:56571909-56571928 None:intergenic 35.0%
AAAGTTCGAGATAGTCATGA+CGG - chr4_4:56571910-56571929 Msa0689500:five_prime_UTR 35.0%
!! AATATGGCCCTATTTTTCTC+CGG - chr4_4:56571949-56571968 Msa0689500:five_prime_UTR 35.0%
GAACTGAAATTAAGAGTCAC+AGG - chr4_4:56571985-56572004 Msa0689500:five_prime_UTR 35.0%
TAAGAGTCACAGGAAGAATA+TGG - chr4_4:56571995-56572014 Msa0689500:five_prime_UTR 35.0%
AAAGAACAACAGAATCCAGA+TGG - chr4_4:56572018-56572037 Msa0689500:five_prime_UTR 35.0%
GGTTGTATTGTGAGAGAGAA+AGG + chr4_4:56567509-56567528 None:intergenic 40.0%
TCTCTCTCTTACCTAGTTTG+AGG + chr4_4:56567530-56567549 None:intergenic 40.0%
TCATGGGTCGATGAAAAAAG+TGG + chr4_4:56567622-56567641 None:intergenic 40.0%
GAGTGTGTTTCTTCTTCTGA+TGG - chr4_4:56567901-56567920 Msa0689500:CDS 40.0%
GTGGATGAAGAATACGATGT+TGG + chr4_4:56567945-56567964 None:intergenic 40.0%
TCATTGAAACCTCGTAATGG+AGG - chr4_4:56568000-56568019 Msa0689500:intron 40.0%
AACTCATGAACACTTGTAGC+AGG + chr4_4:56568066-56568085 None:intergenic 40.0%
AAGCAAACCTGATGAATTGG+AGG + chr4_4:56568123-56568142 None:intergenic 40.0%
! ATTTGGGGCTTATGATGATG+AGG - chr4_4:56568272-56568291 Msa0689500:intron 40.0%
TGATGAGGATGTCCTGAATT+TGG - chr4_4:56568287-56568306 Msa0689500:intron 40.0%
AGATCAGACTTCGGACATAT+AGG - chr4_4:56568773-56568792 Msa0689500:intron 40.0%
TGCACTTCATCTCAAGAGAT+TGG + chr4_4:56568879-56568898 None:intergenic 40.0%
! TTAAAGCCTTTTTGACCGAG+TGG - chr4_4:56569131-56569150 Msa0689500:intron 40.0%
AAGATATTTCTCAGGCAAGG+TGG + chr4_4:56569506-56569525 None:intergenic 40.0%
ACCTTGCCTGAGAAATATCT+TGG - chr4_4:56569505-56569524 Msa0689500:intron 40.0%
ACCAAGATATTTCTCAGGCA+AGG + chr4_4:56569509-56569528 None:intergenic 40.0%
!! TTTTAACCACTTTTAGCCCG+TGG - chr4_4:56569569-56569588 Msa0689500:intron 40.0%
!! TTTAACCACTTTTAGCCCGT+GGG - chr4_4:56569570-56569589 Msa0689500:intron 40.0%
!! GCAACCGATTTTGAATACCA+TGG + chr4_4:56569713-56569732 None:intergenic 40.0%
TGCCACTAAACACGGTAATA+GGG + chr4_4:56569771-56569790 None:intergenic 40.0%
TTGCCACTAAACACGGTAAT+AGG + chr4_4:56569772-56569791 None:intergenic 40.0%
ATTGTGCTTGCCACTAAACA+CGG + chr4_4:56569779-56569798 None:intergenic 40.0%
ATTCACGTTCTGCAGATTCT+AGG - chr4_4:56569851-56569870 Msa0689500:intron 40.0%
AGGGAATTTGTGACTGTATG+AGG - chr4_4:56569909-56569928 Msa0689500:intron 40.0%
ATTGCTGTAAATGGCTGGAA+CGG + chr4_4:56570060-56570079 None:intergenic 40.0%
TTCTGCAAATTCTGGGTTTC+GGG + chr4_4:56570158-56570177 None:intergenic 40.0%
GTTCTGCAAATTCTGGGTTT+CGG + chr4_4:56570159-56570178 None:intergenic 40.0%
CTACTCGTTCTGCAAATTCT+GGG + chr4_4:56570165-56570184 None:intergenic 40.0%
TCTACTCGTTCTGCAAATTC+TGG + chr4_4:56570166-56570185 None:intergenic 40.0%
CAGAACGAGTAGAATCGTAA+TGG - chr4_4:56570173-56570192 Msa0689500:intron 40.0%
GGAATCGTTGTGTTATGTGT+TGG + chr4_4:56570210-56570229 None:intergenic 40.0%
ACCAACTTGGCAGTCAAAAT+CGG + chr4_4:56570331-56570350 None:intergenic 40.0%
!! GTAGGCATTTATTTTCCCAC+TGG + chr4_4:56570400-56570419 None:intergenic 40.0%
! AATCGGAAGGAAAAGTTGGT+AGG + chr4_4:56570418-56570437 None:intergenic 40.0%
AAGGAATCGGAAGGAAAAGT+TGG + chr4_4:56570422-56570441 None:intergenic 40.0%
AAGGGCAAGAAGTAACATTC+TGG + chr4_4:56570825-56570844 None:intergenic 40.0%
TAGGAAGATGTCAAATGAGG+AGG + chr4_4:56570893-56570912 None:intergenic 40.0%
GACAAGAGCTTGGAGATATT+AGG - chr4_4:56571046-56571065 Msa0689500:intron 40.0%
CCAAGAGAGTAGTATTTGCA+TGG + chr4_4:56571111-56571130 None:intergenic 40.0%
CCATGCAAATACTACTCTCT+TGG - chr4_4:56571108-56571127 Msa0689500:intron 40.0%
ATTTCCTCGTTGCACATTTG+AGG - chr4_4:56571244-56571263 Msa0689500:intron 40.0%
TTTCCTCGTTGCACATTTGA+GGG - chr4_4:56571245-56571264 Msa0689500:intron 40.0%
ACATTTGAGGGACGATCATA+AGG - chr4_4:56571257-56571276 Msa0689500:intron 40.0%
GTGAAGTAGAGAATGCTACT+TGG - chr4_4:56571334-56571353 Msa0689500:intron 40.0%
AACGGCACATATTTGACAGA+GGG + chr4_4:56571412-56571431 None:intergenic 40.0%
TAACGGCACATATTTGACAG+AGG + chr4_4:56571413-56571432 None:intergenic 40.0%
CACAATCACCAGATCAAGAT+TGG - chr4_4:56571464-56571483 Msa0689500:intron 40.0%
ATCACCAGATCAAGATTGGA+CGG - chr4_4:56571468-56571487 Msa0689500:intron 40.0%
AATGGCTCGTGTTTCAACTT+TGG + chr4_4:56571528-56571547 None:intergenic 40.0%
! CAAAGTGAAGGCAGAAGTAT+TGG + chr4_4:56571729-56571748 None:intergenic 40.0%
ATGGCATTCCTTCGTTTCAT+GGG - chr4_4:56571781-56571800 Msa0689500:exon 40.0%
TGGAAGAAAACTCATTTGGG+AGG - chr4_4:56571855-56571874 Msa0689500:five_prime_UTR 40.0%
GGAAGAAAACTCATTTGGGA+GGG - chr4_4:56571856-56571875 Msa0689500:five_prime_UTR 40.0%
ATCACCACCGGAGAAAAATA+GGG + chr4_4:56571959-56571978 None:intergenic 40.0%
TATCACCACCGGAGAAAAAT+AGG + chr4_4:56571960-56571979 None:intergenic 40.0%
! TATTTTTCTCCGGTGGTGAT+AGG - chr4_4:56571959-56571978 Msa0689500:five_prime_UTR 40.0%
AACAACAGAATCCAGATGGT+GGG - chr4_4:56572022-56572041 Msa0689500:five_prime_UTR 40.0%
ACACATCAGCTGCAAAGATT+TGG + chr4_4:56572057-56572076 None:intergenic 40.0%
AGAGTAAGACACCAAGATGA+TGG - chr4_4:56572144-56572163 Msa0689500:five_prime_UTR 40.0%
GAGAAAGGAACAAGAACCGT+TGG + chr4_4:56567494-56567513 None:intergenic 45.0%
TCCAAACCACTCGGTCAAAA+AGG + chr4_4:56569140-56569159 None:intergenic 45.0%
GAAGCTGAGTTTCACACGTT+TGG - chr4_4:56569194-56569213 Msa0689500:intron 45.0%
CTGAGTTTCACACGTTTGGT+TGG - chr4_4:56569198-56569217 Msa0689500:intron 45.0%
! TTTCACACGTTTGGTTGGTC+TGG - chr4_4:56569203-56569222 Msa0689500:intron 45.0%
!! TTCACACGTTTGGTTGGTCT+GGG - chr4_4:56569204-56569223 Msa0689500:intron 45.0%
CTCAAAAAGATCTTGCGCGA+GGG - chr4_4:56569239-56569258 Msa0689500:intron 45.0%
TGAAACTTGCCACTCAACAG+CGG + chr4_4:56569375-56569394 None:intergenic 45.0%
GCGCAAATGTCTGAAAATCG+TGG + chr4_4:56569484-56569503 None:intergenic 45.0%
GACGCACCAAGATATTTCTC+AGG + chr4_4:56569514-56569533 None:intergenic 45.0%
! GAGAAATATCTTGGTGCGTC+TGG - chr4_4:56569514-56569533 Msa0689500:intron 45.0%
! ATTGAGCTTGTTTCCGCTTC+TGG - chr4_4:56569541-56569560 Msa0689500:intron 45.0%
!! TACCTTTTGATGGGTGTTCG+AGG - chr4_4:56569595-56569614 Msa0689500:intron 45.0%
CTCCCTATTACCGTGTTTAG+TGG - chr4_4:56569766-56569785 Msa0689500:intron 45.0%
TCTGCAGATTCTAGGTTTCC+CGG - chr4_4:56569859-56569878 Msa0689500:intron 45.0%
!! TCGTAATTTGCTAGCAGCAG+TGG + chr4_4:56570231-56570250 None:intergenic 45.0%
! ATTCTGCTTGGCACTGAACA+CGG - chr4_4:56570257-56570276 Msa0689500:intron 45.0%
CCAACTTGGCAGTCAAAATC+GGG + chr4_4:56570330-56570349 None:intergenic 45.0%
TAGGAAGAGAGAGACCAACT+TGG + chr4_4:56570344-56570363 None:intergenic 45.0%
CTTCCTAGAACTCAAGAGCT+TGG - chr4_4:56570357-56570376 Msa0689500:intron 45.0%
AGACCAAGCTCTTGAGTTCT+AGG + chr4_4:56570363-56570382 None:intergenic 45.0%
AAGGGAGTAATGTATGTGGC+AGG - chr4_4:56570661-56570680 Msa0689500:intron 45.0%
AGGGAGTAATGTATGTGGCA+GGG - chr4_4:56570662-56570681 Msa0689500:intron 45.0%
GTAATGTATGTGGCAGGGAA+TGG - chr4_4:56570667-56570686 Msa0689500:intron 45.0%
! ATCTTTTAGCGATGGGGTTC+TGG - chr4_4:56570791-56570810 Msa0689500:intron 45.0%
AACACAATGTGTGACCGTTG+TGG + chr4_4:56570984-56571003 None:intergenic 45.0%
!!! GTGCACCCTTGTTTTACATG+TGG + chr4_4:56571007-56571026 None:intergenic 45.0%
ATCTCCAAGCTCTTGTCTAC+AGG + chr4_4:56571043-56571062 None:intergenic 45.0%
GCTTGGAGATATTAGGTGTC+TGG - chr4_4:56571053-56571072 Msa0689500:intron 45.0%
AGATATTAGGTGTCTGGCAC+TGG - chr4_4:56571059-56571078 Msa0689500:intron 45.0%
!! TGCTTCAGCTTGCTGTAGTA+TGG + chr4_4:56571150-56571169 None:intergenic 45.0%
CCAGCATAAGGACAAGTGTA+TGG + chr4_4:56571195-56571214 None:intergenic 45.0%
CCATACACTTGTCCTTATGC+TGG - chr4_4:56571192-56571211 Msa0689500:intron 45.0%
TTTGAGGGACGATCATAAGG+TGG - chr4_4:56571260-56571279 Msa0689500:intron 45.0%
GTAGCATTCTCTACTTCACG+CGG + chr4_4:56571333-56571352 None:intergenic 45.0%
TTAGCCGTCCAATCTTGATC+TGG + chr4_4:56571475-56571494 None:intergenic 45.0%
ACTCGTCAGCTCGTTATTCA+CGG + chr4_4:56571582-56571601 None:intergenic 45.0%
GCTGGAAAGCTTCAAAGTGA+AGG + chr4_4:56571741-56571760 None:intergenic 45.0%
!! CACTTTGAAGCTTTCCAGCT+AGG - chr4_4:56571742-56571761 Msa0689500:CDS 45.0%
CGAAGGAATGCCATGTAAAC+TGG + chr4_4:56571775-56571794 None:intergenic 45.0%
CATGGCATTCCTTCGTTTCA+TGG - chr4_4:56571780-56571799 Msa0689500:exon 45.0%
! GACTATCTCGAACTTTTCGG+TGG + chr4_4:56571906-56571925 None:intergenic 45.0%
GAACAACAGAATCCAGATGG+TGG - chr4_4:56572021-56572040 Msa0689500:five_prime_UTR 45.0%
ACAACAGAATCCAGATGGTG+GGG - chr4_4:56572023-56572042 Msa0689500:five_prime_UTR 45.0%
!! ATTAGTATTATTATATTATT+AGG + chr4_4:56570480-56570499 None:intergenic 5.0%
!!! AAGTTTTTTATTTTTTATTA+AGG - chr4_4:56570642-56570661 Msa0689500:intron 5.0%
!!! AGTTTTTTATTTTTTATTAA+GGG - chr4_4:56570643-56570662 Msa0689500:intron 5.0%
ACTTCGGACATATAGGCTGC+AGG - chr4_4:56568780-56568799 Msa0689500:intron 50.0%
CTTCGGACATATAGGCTGCA+GGG - chr4_4:56568781-56568800 Msa0689500:intron 50.0%
! GCCTTTTTGACCGAGTGGTT+TGG - chr4_4:56569136-56569155 Msa0689500:intron 50.0%
GGATTGCACTCCAAACCACT+CGG + chr4_4:56569149-56569168 None:intergenic 50.0%
!! TCACACGTTTGGTTGGTCTG+GGG - chr4_4:56569205-56569224 Msa0689500:intron 50.0%
! CCTCGCGCAAGATCTTTTTG+AGG + chr4_4:56569241-56569260 None:intergenic 50.0%
CCTCAAAAAGATCTTGCGCG+AGG - chr4_4:56569238-56569257 Msa0689500:intron 50.0%
GCTGTTGAGTGGCAAGTTTC+AGG - chr4_4:56569374-56569393 Msa0689500:intron 50.0%
TTTCAGGCCAACAACCACAC+CGG - chr4_4:56569390-56569409 Msa0689500:intron 50.0%
GGTTTAGGCTGATCTGTGAG+TGG + chr4_4:56569424-56569443 None:intergenic 50.0%
CTGAAAATCGTGGAGCGTGT+GGG + chr4_4:56569474-56569493 None:intergenic 50.0%
TCTGAAAATCGTGGAGCGTG+TGG + chr4_4:56569475-56569494 None:intergenic 50.0%
CCATCAAAAGGTAGACCCAC+GGG + chr4_4:56569588-56569607 None:intergenic 50.0%
CCCATCAAAAGGTAGACCCA+CGG + chr4_4:56569589-56569608 None:intergenic 50.0%
! CCGTGGGTCTACCTTTTGAT+GGG - chr4_4:56569586-56569605 Msa0689500:intron 50.0%
GTCCTCGAACACCCATCAAA+AGG + chr4_4:56569600-56569619 None:intergenic 50.0%
!! CGTAATTTGCTAGCAGACGG+TGG - chr4_4:56569799-56569818 Msa0689500:intron 50.0%
CTGCAGATTCTAGGTTTCCC+GGG - chr4_4:56569860-56569879 Msa0689500:intron 50.0%
AGATTCTAGGTTTCCCGGGT+CGG - chr4_4:56569864-56569883 Msa0689500:intron 50.0%
! CAAATTCTGGGTTTCGGGTC+GGG + chr4_4:56570153-56570172 None:intergenic 50.0%
! GCAAATTCTGGGTTTCGGGT+CGG + chr4_4:56570154-56570173 None:intergenic 50.0%
! TTGGCACTGAACACGGTGAT+AGG - chr4_4:56570264-56570283 Msa0689500:intron 50.0%
! TGGCACTGAACACGGTGATA+GGG - chr4_4:56570265-56570284 Msa0689500:intron 50.0%
!!! CCCGATTTTGACTGCCAAGT+TGG - chr4_4:56570327-56570346 Msa0689500:intron 50.0%
CTATTGGTGTGCTCAACCAG+AGG + chr4_4:56570591-56570610 None:intergenic 50.0%
GCTTTCTTGCAGTGCCACAA+CGG - chr4_4:56570967-56570986 Msa0689500:intron 50.0%
CCAAGCTCTTGTCTACAGGT+CGG + chr4_4:56571039-56571058 None:intergenic 50.0%
! TAGGTGTCTGGCACTGGAAA+AGG - chr4_4:56571065-56571084 Msa0689500:intron 50.0%
GAGCACTCTGATCCAGCATA+AGG + chr4_4:56571207-56571226 None:intergenic 50.0%
CATAAGGTGGACATGCACAC+AGG - chr4_4:56571273-56571292 Msa0689500:intron 50.0%
TGAAGCTTTCCAGCTAGGCA+TGG - chr4_4:56571747-56571766 Msa0689500:CDS 50.0%
AGGCATGGCTCCAGTTTACA+TGG - chr4_4:56571762-56571781 Msa0689500:CDS 50.0%
TCTCGTCTCCCATGAAACGA+AGG + chr4_4:56571792-56571811 None:intergenic 50.0%
TTTCATGGGAGACGAGAACG+AGG - chr4_4:56571795-56571814 Msa0689500:five_prime_UTR 50.0%
GAACTATACCTACAGCCTCG+AGG - chr4_4:56571822-56571841 Msa0689500:five_prime_UTR 50.0%
TATACCTACAGCCTCGAGGT+TGG - chr4_4:56571826-56571845 Msa0689500:five_prime_UTR 50.0%
ATACCTACAGCCTCGAGGTT+GGG - chr4_4:56571827-56571846 Msa0689500:five_prime_UTR 50.0%
! TCATTTGGGAGGGTACACCA+CGG - chr4_4:56571866-56571885 Msa0689500:five_prime_UTR 50.0%
! GAACTTTTCGGTGGCTATCG+CGG + chr4_4:56571897-56571916 None:intergenic 50.0%
!! ATGGCCCTATTTTTCTCCGG+TGG - chr4_4:56571952-56571971 Msa0689500:five_prime_UTR 50.0%
TTTCTCCGGTGGTGATAGGA+AGG - chr4_4:56571963-56571982 Msa0689500:five_prime_UTR 50.0%
CAGTTCCTTCCTATCACCAC+CGG + chr4_4:56571971-56571990 None:intergenic 50.0%
GGTATACAAACCCCACCATC+TGG + chr4_4:56572036-56572055 None:intergenic 50.0%
CACTGTCTTCCGCTGTTGAG+TGG - chr4_4:56569363-56569382 Msa0689500:intron 55.0%
ATACCCTCCGGTGTGGTTGT+TGG + chr4_4:56569400-56569419 None:intergenic 55.0%
TCTGTGAGTGGCATACCCTC+CGG + chr4_4:56569412-56569431 None:intergenic 55.0%
! GTAGACCCACGGGCTAAAAG+TGG + chr4_4:56569578-56569597 None:intergenic 55.0%
! CCCGTGGGTCTACCTTTTGA+TGG - chr4_4:56569585-56569604 Msa0689500:intron 55.0%
GATTCTAGGTTTCCCGGGTC+GGG - chr4_4:56569865-56569884 Msa0689500:intron 55.0%
!! GCGATGGGGTTCTGGTTCAT+AGG - chr4_4:56570799-56570818 Msa0689500:intron 55.0%
CCGACCTGTAGACAAGAGCT+TGG - chr4_4:56571036-56571055 Msa0689500:intron 55.0%
! GGATCAGAGTGCTCTGCTGT+TGG - chr4_4:56571213-56571232 Msa0689500:intron 55.0%
CGTCCCTCAAATGTGCAACG+AGG + chr4_4:56571251-56571270 None:intergenic 55.0%
AAACTGGAGCCATGCCTAGC+TGG + chr4_4:56571759-56571778 None:intergenic 55.0%
TACCTACAGCCTCGAGGTTG+GGG - chr4_4:56571828-56571847 Msa0689500:five_prime_UTR 55.0%
TTCCATTTGCCCCAACCTCG+AGG + chr4_4:56571840-56571859 None:intergenic 55.0%
AGGCCAACAACCACACCGGA+GGG - chr4_4:56569394-56569413 Msa0689500:intron 60.0%
GACGGTGGAATCGTCGTGCT+AGG - chr4_4:56569814-56569833 Msa0689500:intron 60.0%
GGTGGAATCGTCGTGCTAGG+TGG - chr4_4:56569817-56569836 Msa0689500:intron 60.0%
GGAATCGTCGTGCTAGGTGG+TGG - chr4_4:56569820-56569839 Msa0689500:intron 60.0%
! TTGGGTTGTGTGACCCGACC+CGG + chr4_4:56569881-56569900 None:intergenic 60.0%
!! CGGGTCGGGACTGGTTTCAA+TGG + chr4_4:56570139-56570158 None:intergenic 60.0%
TGGGAGACGAGAACGAGGCT+CGG - chr4_4:56571800-56571819 Msa0689500:five_prime_UTR 60.0%
AGCCTCGAGGTTGGGGCAAA+TGG - chr4_4:56571835-56571854 Msa0689500:five_prime_UTR 60.0%
TGGCTATCGCGGATACTCCG+TGG + chr4_4:56571886-56571905 None:intergenic 60.0%
CAGGCCAACAACCACACCGG+AGG - chr4_4:56569393-56569412 Msa0689500:intron 65.0%
GAGTGGCATACCCTCCGGTG+TGG + chr4_4:56569407-56569426 None:intergenic 65.0%
TGGGTTGTGTGACCCGACCC+GGG + chr4_4:56569880-56569899 None:intergenic 65.0%
! TCTGGGTTTCGGGTCGGGAC+TGG + chr4_4:56570148-56570167 None:intergenic 65.0%
TGCCCCAACCTCGAGGCTGT+AGG + chr4_4:56571833-56571852 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56567399 56572266 56567399 ID=Msa0689500;Name=Msa0689500
chr4_4 mRNA 56567399 56572266 56567399 ID=Msa0689500-mRNA-1;Parent=Msa0689500;Name=Msa0689500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=484|1|1|1|1|1|3|195|333
chr4_4 exon 56567399 56567956 56567399 ID=Msa0689500-mRNA-1:exon:14946;Parent=Msa0689500-mRNA-1
chr4_4 exon 56568300 56568686 56568300 ID=Msa0689500-mRNA-1:exon:14945;Parent=Msa0689500-mRNA-1
chr4_4 exon 56571531 56572266 56571531 ID=Msa0689500-mRNA-1:exon:14944;Parent=Msa0689500-mRNA-1
chr4_4 five_prime_UTR 56571783 56572266 56571783 ID=Msa0689500-mRNA-1:five_prime_utr;Parent=Msa0689500-mRNA-1
chr4_4 CDS 56571531 56571782 56571531 ID=Msa0689500-mRNA-1:cds;Parent=Msa0689500-mRNA-1
chr4_4 CDS 56568300 56568686 56568300 ID=Msa0689500-mRNA-1:cds;Parent=Msa0689500-mRNA-1
chr4_4 CDS 56567594 56567956 56567594 ID=Msa0689500-mRNA-1:cds;Parent=Msa0689500-mRNA-1
chr4_4 three_prime_UTR 56567399 56567593 56567399 ID=Msa0689500-mRNA-1:three_prime_utr;Parent=Msa0689500-mRNA-1
Gene Sequence

>Msa0689500

ATGGATTTGGATAGTATTGAGTGTGTTTCTTCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACATCATCAACAACATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACAATAATCATGGTGTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACCTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTTGCTGAATCACTCGAGTTACCATGCAAATACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTAATTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTACAGCCTCGAGGTTGGGGCAAATGGAAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGCGATAGCCACCGAAAAGTTCGAGATAGTCATGACGGCCTCATAATTCAACGAAATATGGCCCTATTTTTCTCCGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTTTGTATACCAAATCTTTGCAGCTGA

Protein sequence

>Msa0689500

MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPRNGGNNNHGVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS*