AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226330 MtrunA17_Chr2g0333001 99.320 147 1 0 1 147 1 147 4.02e-106 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226330 AT1G15370.1 87.671 146 18 0 1 146 1 146 1.38e-93 267

Find 52 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTTAATGCAAGTATTTA+TGG 0.228862 2_1:-76840388 None:intergenic
CCTACACTGGCGTTCTTTCT+TGG 0.246824 2_1:+76837823 Msa0226330:CDS
TAAAGGGTATCTCAGTAATT+TGG 0.251980 2_1:+76835953 Msa0226330:five_prime_UTR
CGCCGTTTCCTTGATAAGTA+TGG 0.286828 2_1:+76839625 Msa0226330:CDS
ACTTGAAACAAAATCTAAAT+AGG 0.336053 2_1:+76835869 None:intergenic
CAAAGAGGTTTGCCTGGCTT+TGG 0.366671 2_1:-76840317 None:intergenic
TCTTCTAAGTATATGTTTGT+TGG 0.372448 2_1:+76840504 Msa0226330:three_prime_UTR
ACTAGGAGCTGATAATCTTA+AGG 0.380283 2_1:+76837850 Msa0226330:CDS
CAAGGAAACGGCGCTCAGTT+GGG 0.381526 2_1:-76839615 None:intergenic
ATGTTAATGCAAGTATTTAT+GGG 0.382157 2_1:-76840387 None:intergenic
TGGAAGAATTTGCTTGTGTT+TGG 0.393493 2_1:+76839645 Msa0226330:CDS
CAGTGTAGGCGCTCCTCTGC+AGG 0.428518 2_1:-76837809 None:intergenic
TACAATAACCTCAGCTGTAA+AGG 0.434603 2_1:+76839576 Msa0226330:CDS
CGTTCTTTCTTGGTCAAACT+AGG 0.434756 2_1:+76837833 Msa0226330:CDS
CTAGGAGCTGATAATCTTAA+GGG 0.435141 2_1:+76837851 Msa0226330:CDS
GAAGGGATATCTGGAAAATA+CGG 0.437154 2_1:+76840159 Msa0226330:intron
AAATTCTTCCATACTTATCA+AGG 0.445192 2_1:-76839633 None:intergenic
TGTGTTTGGATGAAATTGTA+TGG 0.456773 2_1:+76839659 Msa0226330:CDS
TCAAGGAAACGGCGCTCAGT+TGG 0.462763 2_1:-76839616 None:intergenic
TTTGTTCTCTAGAATGGTGC+AGG 0.468911 2_1:+76840348 Msa0226330:three_prime_UTR
ATCATACAAAGAGGTTTGCC+TGG 0.471740 2_1:-76840323 None:intergenic
TTCCATACTTATCAAGGAAA+CGG 0.477616 2_1:-76839627 None:intergenic
GTATCTCAGTAATTTGGAAC+AGG 0.490425 2_1:+76835959 Msa0226330:five_prime_UTR
AAGGAAACGGCGCTCAGTTG+GGG 0.501938 2_1:-76839614 None:intergenic
GAGGATATTGCCCTCGGCGT+TGG 0.506903 2_1:-76836067 None:intergenic
ATTACACTTAATTATGTCAA+AGG 0.508092 2_1:-76835907 None:intergenic
CTCATTCAAAACTCAGTAGG+AGG 0.512002 2_1:-76840217 None:intergenic
ATAGAATCAAGAGATTGATA+AGG 0.521125 2_1:+76840188 Msa0226330:CDS
GATGTCAGTATATACGTTGT+GGG 0.529870 2_1:+76838314 Msa0226330:CDS
TTTCTCATTCAAAACTCAGT+AGG 0.534349 2_1:-76840220 None:intergenic
TCAGCTGTAAAGGATGTATG+TGG 0.535855 2_1:+76839586 Msa0226330:CDS
TATATTGTATACACAGTACT+TGG 0.537335 2_1:+76838290 Msa0226330:CDS
CAGTATATACGTTGTGGGGA+AGG 0.538675 2_1:+76838319 Msa0226330:CDS
CTGCAGAGGAGCGCCTACAC+TGG 0.552563 2_1:+76837810 Msa0226330:CDS
AATGGCATGTAACCAAAGCC+AGG 0.576237 2_1:+76840305 Msa0226330:three_prime_UTR
TTTGGATGAAATTGTATGGA+AGG 0.577163 2_1:+76839663 Msa0226330:CDS
ACTCCGGTAAGCAAAGCAAA+AGG 0.583225 2_1:+76835993 Msa0226330:five_prime_UTR
TTCGATGAGGATATTGCCCT+CGG 0.588896 2_1:-76836073 None:intergenic
AGATGTCAGTATATACGTTG+TGG 0.591952 2_1:+76838313 Msa0226330:CDS
GAGCATCTTGTGACTTAGAA+TGG 0.593221 2_1:+76840287 Msa0226330:three_prime_UTR
GAACAAAATATCATACAAAG+AGG 0.595753 2_1:-76840332 None:intergenic
CCAAGAAAGAACGCCAGTGT+AGG 0.602222 2_1:-76837823 None:intergenic
TCTCTAGAATGGTGCAGGCG+AGG 0.603839 2_1:+76840353 Msa0226330:three_prime_UTR
ATGTCAGTATATACGTTGTG+GGG 0.608096 2_1:+76838315 Msa0226330:CDS
AGGAAACGGCGCTCAGTTGG+GGG 0.618275 2_1:-76839613 None:intergenic
ACATACATCCTTTACAGCTG+AGG 0.624977 2_1:-76839584 None:intergenic
CAGCTGTAAAGGATGTATGT+GGG 0.637321 2_1:+76839587 Msa0226330:CDS
AGTGTACTCACCGTTCGATG+AGG 0.647564 2_1:-76836086 None:intergenic
GAAAATAAACACATTGCACA+AGG 0.664585 2_1:-76840464 None:intergenic
AAAACGGAATATGATCCTTG+CGG 0.685453 2_1:+76836035 Msa0226330:exon
AGGGCAATATCCTCATCGAA+CGG 0.685734 2_1:+76836076 Msa0226330:CDS
AATCTGCAGTTTGAGTCGTG+TGG 0.747932 2_1:+76840263 Msa0226330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAAAGAAAATATATAA+AGG + chr2_1:76835936-76835955 Msa0226330:five_prime_UTR 10.0%
!! TGAAAAAGAAAATATATAAA+GGG + chr2_1:76835937-76835956 Msa0226330:five_prime_UTR 10.0%
!! ATTATCATTAATGAAAAATT+TGG + chr2_1:76838017-76838036 Msa0226330:intron 10.0%
!!! GTTTGAAATTTTGATTATAT+TGG + chr2_1:76836227-76836246 Msa0226330:intron 15.0%
!!! TTTAACAAAATGGATTTTTA+TGG - chr2_1:76836667-76836686 None:intergenic 15.0%
!!! AACTCATTTTTTTAACAAAA+TGG - chr2_1:76836677-76836696 None:intergenic 15.0%
!!! ATGAAAAAGTGATTTTTTTA+AGG + chr2_1:76836840-76836859 Msa0226330:intron 15.0%
!!! TTTTTTTTGTTTTGAAAACT+CGG + chr2_1:76837441-76837460 Msa0226330:intron 15.0%
!! TATCCTATTAGAAATAAATA+GGG + chr2_1:76838585-76838604 Msa0226330:intron 15.0%
!! TTAAATATGTATACTATTCT+TGG - chr2_1:76839330-76839349 None:intergenic 15.0%
!! ACATATTTAATCAAAAAACA+AGG + chr2_1:76839340-76839359 Msa0226330:intron 15.0%
!! ATTACACTTAATTATGTCAA+AGG - chr2_1:76835910-76835929 None:intergenic 20.0%
!! AATAAAAAGATGAGAAAATG+AGG - chr2_1:76836164-76836183 None:intergenic 20.0%
!! TGAAAACAACTTAAGATTTA+GGG - chr2_1:76836298-76836317 None:intergenic 20.0%
!! TAACAAAAGATAAAATGAAG+TGG - chr2_1:76836379-76836398 None:intergenic 20.0%
!! AAATTAGAAAACCAGATTAT+GGG + chr2_1:76836533-76836552 Msa0226330:intron 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG - chr2_1:76836824-76836843 None:intergenic 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG + chr2_1:76836881-76836900 Msa0226330:intron 20.0%
!! TCTGATATTTATTGTATCAT+TGG - chr2_1:76837404-76837423 None:intergenic 20.0%
!!! AGTTCTGATAATCAAAAATT+TGG - chr2_1:76837753-76837772 None:intergenic 20.0%
!!! ATCTATTCCTGATTTTTTAT+GGG - chr2_1:76838090-76838109 None:intergenic 20.0%
!!! TATCTATTCCTGATTTTTTA+TGG - chr2_1:76838091-76838110 None:intergenic 20.0%
!!! GACATAATTTTCAAAAATGA+AGG - chr2_1:76838183-76838202 None:intergenic 20.0%
!! TAAATCACTGTTTACTAAAA+GGG - chr2_1:76838231-76838250 None:intergenic 20.0%
!! ATAAATCACTGTTTACTAAA+AGG - chr2_1:76838232-76838251 None:intergenic 20.0%
!!! CAATCTTTTTTATTTGATGA+CGG + chr2_1:76838380-76838399 Msa0226330:intron 20.0%
!!! TTTATTTCTAATAGGATACA+GGG - chr2_1:76838583-76838602 None:intergenic 20.0%
!!! ATTTATTTCTAATAGGATAC+AGG - chr2_1:76838584-76838603 None:intergenic 20.0%
!! GTATCCTATTAGAAATAAAT+AGG + chr2_1:76838584-76838603 Msa0226330:intron 20.0%
!! AGTATTCTATCTTTGTAATT+GGG - chr2_1:76838617-76838636 None:intergenic 20.0%
!! TAGTATTCTATCTTTGTAAT+TGG - chr2_1:76838618-76838637 None:intergenic 20.0%
!! ATGTTAATGCAAGTATTTAT+GGG - chr2_1:76840390-76840409 None:intergenic 20.0%
!! AATGTTAATGCAAGTATTTA+TGG - chr2_1:76840391-76840410 None:intergenic 20.0%
!!! TGTTTATTTTCACTCTTTTT+TGG + chr2_1:76840476-76840495 Msa0226330:three_prime_UTR 20.0%
!! AGTTTGATTTCAGAGAAAAA+CGG + chr2_1:76836019-76836038 Msa0226330:five_prime_UTR 25.0%
!!! GGTTTAGCTTCATTTTTAAT+AGG + chr2_1:76836248-76836267 Msa0226330:intron 25.0%
! CTGAAAACAACTTAAGATTT+AGG - chr2_1:76836299-76836318 None:intergenic 25.0%
!! AAAATGAAGTGGAATTGTTT+TGG - chr2_1:76836368-76836387 None:intergenic 25.0%
! ATAAGTTGTTTATCCTAACA+TGG + chr2_1:76836444-76836463 Msa0226330:intron 25.0%
!!! GCTATTATCATATTAGTCTT+AGG - chr2_1:76836508-76836527 None:intergenic 25.0%
! AGACTAATATGATAATAGCT+TGG + chr2_1:76836509-76836528 Msa0226330:intron 25.0%
! GACTAATATGATAATAGCTT+GGG + chr2_1:76836510-76836529 Msa0226330:intron 25.0%
! GAAATTAGAAAACCAGATTA+TGG + chr2_1:76836532-76836551 Msa0226330:intron 25.0%
!!! AATGGATTTTTATGGATAGT+AGG - chr2_1:76836659-76836678 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + chr2_1:76836757-76836776 Msa0226330:intron 25.0%
!! CCTAATAGCTTTTCATTTTA+GGG + chr2_1:76836758-76836777 Msa0226330:intron 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG + chr2_1:76836882-76836901 Msa0226330:intron 25.0%
!! GAAGCTTTAATAAAATACCT+TGG - chr2_1:76837316-76837335 None:intergenic 25.0%
! ATTTCTCTTTAATCAGATTG+AGG + chr2_1:76837338-76837357 Msa0226330:intron 25.0%
! TTTCTCTTTAATCAGATTGA+GGG + chr2_1:76837339-76837358 Msa0226330:intron 25.0%
! AAATATCAGAGAATACACTA+TGG + chr2_1:76837414-76837433 Msa0226330:intron 25.0%
!! TTTTCTCTATCGCAATTAAA+AGG + chr2_1:76837583-76837602 Msa0226330:intron 25.0%
! TTTCTCTATCGCAATTAAAA+GGG + chr2_1:76837584-76837603 Msa0226330:intron 25.0%
! AAATGTTGTCAGAAAGTAAA+TGG + chr2_1:76837664-76837683 Msa0226330:intron 25.0%
! GTATGAATGTATATCTTACA+TGG + chr2_1:76837954-76837973 Msa0226330:intron 25.0%
! AAAAATTTGGAAAAGAGTTG+TGG + chr2_1:76838030-76838049 Msa0226330:intron 25.0%
! TTCTACTTCTTATCTTTATC+AGG + chr2_1:76838261-76838280 Msa0226330:intron 25.0%
! TATATTGTATACACAGTACT+TGG + chr2_1:76838290-76838309 Msa0226330:CDS 25.0%
! CGTCATCAAATAAAAAAGAT+TGG - chr2_1:76838382-76838401 None:intergenic 25.0%
!!! TTTTATTTGATGACGGTAAA+TGG + chr2_1:76838387-76838406 Msa0226330:intron 25.0%
!!! TGTCCCTATTTATTTCTAAT+AGG - chr2_1:76838591-76838610 None:intergenic 25.0%
! GTATTCTATCTTTGTAATTG+GGG - chr2_1:76838616-76838635 None:intergenic 25.0%
!! TGTTATTTAAGAGAGAATTG+GGG - chr2_1:76838678-76838697 None:intergenic 25.0%
!!! GTGTTATTTAAGAGAGAATT+GGG - chr2_1:76838679-76838698 None:intergenic 25.0%
!!! TGTGTTATTTAAGAGAGAAT+TGG - chr2_1:76838680-76838699 None:intergenic 25.0%
!!! ACGTGTTGATTATATTTTGT+TGG + chr2_1:76838893-76838912 Msa0226330:intron 25.0%
!! CTAGTTTATCATCTTTTCTA+GGG - chr2_1:76839166-76839185 None:intergenic 25.0%
! GATGATAAACTAGCTATTAA+AGG + chr2_1:76839173-76839192 Msa0226330:intron 25.0%
! TAGAATCTAACTAAACTTAG+CGG + chr2_1:76839286-76839305 Msa0226330:intron 25.0%
! TTCATATTGTGATTTGATGA+TGG + chr2_1:76839370-76839389 Msa0226330:intron 25.0%
! AAATTGTAATTTCAAACCCT+TGG - chr2_1:76839452-76839471 None:intergenic 25.0%
!! AAGGGTTTGAAATTACAATT+TGG + chr2_1:76839451-76839470 Msa0226330:intron 25.0%
! AAATTCTTCCATACTTATCA+AGG - chr2_1:76839636-76839655 None:intergenic 25.0%
!! ATCTTTTACTAAACATTGTC+CGG - chr2_1:76839701-76839720 None:intergenic 25.0%
! CTAAGGTAAGTAAAATGAAT+GGG - chr2_1:76839754-76839773 None:intergenic 25.0%
!! TCTAAGGTAAGTAAAATGAA+TGG - chr2_1:76839755-76839774 None:intergenic 25.0%
! CATAAAATGATGTTTCTCTA+AGG - chr2_1:76839771-76839790 None:intergenic 25.0%
!! AAGTTTTGCATGAAAATATG+GGG - chr2_1:76839996-76840015 None:intergenic 25.0%
!! CAAGTTTTGCATGAAAATAT+GGG - chr2_1:76839997-76840016 None:intergenic 25.0%
! ATAGAATCAAGAGATTGATA+AGG + chr2_1:76840188-76840207 Msa0226330:CDS 25.0%
! GAACAAAATATCATACAAAG+AGG - chr2_1:76840335-76840354 None:intergenic 25.0%
!!! TGATATTTTGTTCTCTAGAA+TGG + chr2_1:76840342-76840361 Msa0226330:three_prime_UTR 25.0%
! TCTTCTAAGTATATGTTTGT+TGG + chr2_1:76840504-76840523 Msa0226330:three_prime_UTR 25.0%
!! TAAAGGGTATCTCAGTAATT+TGG + chr2_1:76835953-76835972 Msa0226330:five_prime_UTR 30.0%
CCCTAAAATGAAAAGCTATT+AGG - chr2_1:76836761-76836780 None:intergenic 30.0%
! ACTTACAAAGAAGTGCAAAT+GGG - chr2_1:76837136-76837155 None:intergenic 30.0%
! AACTTACAAAGAAGTGCAAA+TGG - chr2_1:76837137-76837156 None:intergenic 30.0%
TGGAACTCTATTCTTATTCT+TGG - chr2_1:76837172-76837191 None:intergenic 30.0%
TATCTGAGAGAACTTAGATT+CGG - chr2_1:76837225-76837244 None:intergenic 30.0%
AAACATTCAAACACAAACCA+AGG + chr2_1:76837296-76837315 Msa0226330:intron 30.0%
TTCTCTTTAATCAGATTGAG+GGG + chr2_1:76837340-76837359 Msa0226330:intron 30.0%
ATGAAACACTAGAAATGAAC+GGG - chr2_1:76837371-76837390 None:intergenic 30.0%
CATGAAACACTAGAAATGAA+CGG - chr2_1:76837372-76837391 None:intergenic 30.0%
AAAAGATAGAAGCTACCTAA+GGG - chr2_1:76837567-76837586 None:intergenic 30.0%
!! TTTTGATTATCAGAACTGAG+TGG + chr2_1:76837756-76837775 Msa0226330:intron 30.0%
! TGTTATGATTGCAGTTTTCA+TGG + chr2_1:76837782-76837801 Msa0226330:intron 30.0%
AAGAGCAGTAAATTTACTTG+TGG - chr2_1:76837907-76837926 None:intergenic 30.0%
AACTTGTCCCATAAAAAATC+AGG + chr2_1:76838080-76838099 Msa0226330:intron 30.0%
TTGCCTATAAATAACAAGAG+TGG - chr2_1:76838720-76838739 None:intergenic 30.0%
CAAAATATAATCAACACGTC+AGG - chr2_1:76838892-76838911 None:intergenic 30.0%
TAACAGAGAAGAATCAAACT+TGG - chr2_1:76838927-76838946 None:intergenic 30.0%
ATTAAGGCAATAGATCGAAA+AGG - chr2_1:76839080-76839099 None:intergenic 30.0%
AGAGAAGCTTGCAAAAATTA+AGG - chr2_1:76839096-76839115 None:intergenic 30.0%
AATTCATTGCTAAACGAGAA+TGG - chr2_1:76839140-76839159 None:intergenic 30.0%
!! GCTAGTTTATCATCTTTTCT+AGG - chr2_1:76839167-76839186 None:intergenic 30.0%
!! TGCATATTGTTATTTCACCA+AGG + chr2_1:76839432-76839451 Msa0226330:intron 30.0%
!! GCATATTGTTATTTCACCAA+GGG + chr2_1:76839433-76839452 Msa0226330:intron 30.0%
TTCCATACTTATCAAGGAAA+CGG - chr2_1:76839630-76839649 None:intergenic 30.0%
TGTGTTTGGATGAAATTGTA+TGG + chr2_1:76839659-76839678 Msa0226330:CDS 30.0%
TTTGGATGAAATTGTATGGA+AGG + chr2_1:76839663-76839682 Msa0226330:CDS 30.0%
! CCAAGTTTTGCATGAAAATA+TGG - chr2_1:76839998-76840017 None:intergenic 30.0%
! CCATATTTTCATGCAAAACT+TGG + chr2_1:76839995-76840014 Msa0226330:intron 30.0%
AGATGCAAAAAGATACAGAT+TGG - chr2_1:76840060-76840079 None:intergenic 30.0%
! TTTCCCTGTATTTCTTTTGA+AGG + chr2_1:76840141-76840160 Msa0226330:intron 30.0%
! TTCCCTGTATTTCTTTTGAA+GGG + chr2_1:76840142-76840161 Msa0226330:intron 30.0%
ATCCCTTCAAAAGAAATACA+GGG - chr2_1:76840147-76840166 None:intergenic 30.0%
TATCCCTTCAAAAGAAATAC+AGG - chr2_1:76840148-76840167 None:intergenic 30.0%
!! ATTTCTTTTGAAGGGATATC+TGG + chr2_1:76840150-76840169 Msa0226330:intron 30.0%
TTTCTCATTCAAAACTCAGT+AGG - chr2_1:76840223-76840242 None:intergenic 30.0%
!! GTTTTGAATGAGAAATTCTG+AGG + chr2_1:76840228-76840247 Msa0226330:exon 30.0%
GAAAATAAACACATTGCACA+AGG - chr2_1:76840467-76840486 None:intergenic 30.0%
! GTATCTCAGTAATTTGGAAC+AGG + chr2_1:76835959-76835978 Msa0226330:five_prime_UTR 35.0%
! ACAGGTGATTTTTACAACTC+CGG + chr2_1:76835977-76835996 Msa0226330:five_prime_UTR 35.0%
AAAACGGAATATGATCCTTG+CGG + chr2_1:76836035-76836054 Msa0226330:exon 35.0%
! TTTCAGCGTTTTCTTTGATC+TGG + chr2_1:76836199-76836218 Msa0226330:intron 35.0%
TTATACATAAGCGCTTGTCA+TGG + chr2_1:76836409-76836428 Msa0226330:intron 35.0%
! TACCTAGGCTTTATCTGATA+GGG - chr2_1:76836978-76836997 None:intergenic 35.0%
! TTACCTAGGCTTTATCTGAT+AGG - chr2_1:76836979-76836998 None:intergenic 35.0%
! CTTACAAAGAAGTGCAAATG+GGG - chr2_1:76837135-76837154 None:intergenic 35.0%
GAATCTAAGTTCTCTCAGAT+AGG + chr2_1:76837224-76837243 Msa0226330:intron 35.0%
! GAATGCATTTTCAGAAACAC+TGG - chr2_1:76837543-76837562 None:intergenic 35.0%
GAAAAGATAGAAGCTACCTA+AGG - chr2_1:76837568-76837587 None:intergenic 35.0%
TTACTTTGTATGTGAGTGAC+TGG - chr2_1:76837638-76837657 None:intergenic 35.0%
! TGTCAGAAAGTAAATGGACT+TGG + chr2_1:76837670-76837689 Msa0226330:intron 35.0%
!! ACTTGGAACTTTTTCTTGTG+TGG + chr2_1:76837687-76837706 Msa0226330:intron 35.0%
ACTAGGAGCTGATAATCTTA+AGG + chr2_1:76837850-76837869 Msa0226330:CDS 35.0%
CTAGGAGCTGATAATCTTAA+GGG + chr2_1:76837851-76837870 Msa0226330:CDS 35.0%
AAGTGAGCACTCTATATTTC+AGG + chr2_1:76837993-76838012 Msa0226330:intron 35.0%
TTGGAAAAGAGTTGTGGAAA+TGG + chr2_1:76838036-76838055 Msa0226330:intron 35.0%
CAGGAATAGATACAAGATTG+TGG + chr2_1:76838099-76838118 Msa0226330:intron 35.0%
AGATGTCAGTATATACGTTG+TGG + chr2_1:76838313-76838332 Msa0226330:CDS 35.0%
GATGTCAGTATATACGTTGT+GGG + chr2_1:76838314-76838333 Msa0226330:CDS 35.0%
ATGTCAGTATATACGTTGTG+GGG + chr2_1:76838315-76838334 Msa0226330:CDS 35.0%
!! CGACCACTCTTGTTATTTAT+AGG + chr2_1:76838714-76838733 Msa0226330:intron 35.0%
! ATTGTTGATGAAAGGACTGT+TGG - chr2_1:76838791-76838810 None:intergenic 35.0%
AGTCCTTTCATCAACAATGT+AGG + chr2_1:76838793-76838812 Msa0226330:intron 35.0%
! GAACCTACATTGTTGATGAA+AGG - chr2_1:76838799-76838818 None:intergenic 35.0%
AATATAATCAACACGTCAGG+AGG - chr2_1:76838889-76838908 None:intergenic 35.0%
GCTATTAAAGGATACTCTTG+CGG + chr2_1:76839185-76839204 Msa0226330:intron 35.0%
AACAATATGCATGAGTCACT+CGG - chr2_1:76839423-76839442 None:intergenic 35.0%
TTGACAGCTTACGAACATAT+AGG - chr2_1:76839482-76839501 None:intergenic 35.0%
!!! GTTTTGTTTTTCTCCAGTGT+CGG + chr2_1:76839543-76839562 Msa0226330:intron 35.0%
TACAATAACCTCAGCTGTAA+AGG + chr2_1:76839576-76839595 Msa0226330:CDS 35.0%
! TGGAAGAATTTGCTTGTGTT+TGG + chr2_1:76839645-76839664 Msa0226330:CDS 35.0%
GAAGGGATATCTGGAAAATA+CGG + chr2_1:76840159-76840178 Msa0226330:intron 35.0%
! CAACCTTTTGCTTTGCTTAC+CGG - chr2_1:76835999-76836018 None:intergenic 40.0%
GATCAGAAAGAGAGAGAGAT+CGG - chr2_1:76836112-76836131 None:intergenic 40.0%
!! TCCTAACATGGCTTTGATTG+AGG + chr2_1:76836456-76836475 Msa0226330:intron 40.0%
TCCTCAATCAAAGCCATGTT+AGG - chr2_1:76836460-76836479 None:intergenic 40.0%
AAACAAACGCACCCATAATC+TGG - chr2_1:76836547-76836566 None:intergenic 40.0%
! ACCTAGGCTTTATCTGATAG+GGG - chr2_1:76836977-76836996 None:intergenic 40.0%
! GCTTGTTAGTCAAGCTTTGA+AGG + chr2_1:76837053-76837072 Msa0226330:intron 40.0%
CTTAGATTCGGATTCAGTTC+AGG - chr2_1:76837213-76837232 None:intergenic 40.0%
CTGAAAATGCATTCTCCCTT+AGG + chr2_1:76837549-76837568 Msa0226330:intron 40.0%
GACTGGAATGACATGTGATA+TGG - chr2_1:76837621-76837640 None:intergenic 40.0%
CCAAGTATCTTCTACAATGC+AGG - chr2_1:76837728-76837747 None:intergenic 40.0%
CCTGCATTGTAGAAGATACT+TGG + chr2_1:76837725-76837744 Msa0226330:intron 40.0%
CGTTCTTTCTTGGTCAAACT+AGG + chr2_1:76837833-76837852 Msa0226330:CDS 40.0%
CCTTTCTCAAGTCATGTGTA+CGG + chr2_1:76837928-76837947 Msa0226330:intron 40.0%
CTTTCTCAAGTCATGTGTAC+GGG + chr2_1:76837929-76837948 Msa0226330:intron 40.0%
AAGAGAGAATTGGGGACTTT+GGG - chr2_1:76838670-76838689 None:intergenic 40.0%
TAAGAGAGAATTGGGGACTT+TGG - chr2_1:76838671-76838690 None:intergenic 40.0%
AATAACAAGAGTGGTCGAGA+GGG - chr2_1:76838711-76838730 None:intergenic 40.0%
AAATAACAAGAGTGGTCGAG+AGG - chr2_1:76838712-76838731 None:intergenic 40.0%
GGTAACAAGGTTAGGTAGTT+GGG - chr2_1:76838770-76838789 None:intergenic 40.0%
TGGTAACAAGGTTAGGTAGT+TGG - chr2_1:76838771-76838790 None:intergenic 40.0%
!! TGAAAGGACTGTTGGTAACA+AGG - chr2_1:76838783-76838802 None:intergenic 40.0%
AAGAATCAGAACTGCAGACA+AGG - chr2_1:76838838-76838857 None:intergenic 40.0%
! TTGTCTGCAGTTCTGATTCT+TGG + chr2_1:76838837-76838856 Msa0226330:intron 40.0%
TTCTCCTCATGCTGTCAATT+GGG + chr2_1:76838975-76838994 Msa0226330:intron 40.0%
ATGGGAAATATTGTGCAGGA+TGG - chr2_1:76839017-76839036 None:intergenic 40.0%
TGGTATGGGAAATATTGTGC+AGG - chr2_1:76839021-76839040 None:intergenic 40.0%
!!! GGACGCTAGTTTTATGGTAT+GGG - chr2_1:76839035-76839054 None:intergenic 40.0%
!!! TGGACGCTAGTTTTATGGTA+TGG - chr2_1:76839036-76839055 None:intergenic 40.0%
!! AAACGAGAATGGTGGATTGA+GGG - chr2_1:76839129-76839148 None:intergenic 40.0%
!! TAAACGAGAATGGTGGATTG+AGG - chr2_1:76839130-76839149 None:intergenic 40.0%
TCATTGCTAAACGAGAATGG+TGG - chr2_1:76839137-76839156 None:intergenic 40.0%
! CTCTTGCGGTGTTGAAAATA+TGG + chr2_1:76839199-76839218 Msa0226330:intron 40.0%
AGTGAGAAAAGCTAGCTATC+AGG + chr2_1:76839242-76839261 Msa0226330:intron 40.0%
TAGCTATCAGGTGAACTAGT+AGG + chr2_1:76839254-76839273 Msa0226330:intron 40.0%
AGCTATCAGGTGAACTAGTA+GGG + chr2_1:76839255-76839274 Msa0226330:intron 40.0%
ACATACATCCTTTACAGCTG+AGG - chr2_1:76839587-76839606 None:intergenic 40.0%
TCAGCTGTAAAGGATGTATG+TGG + chr2_1:76839586-76839605 Msa0226330:CDS 40.0%
CAGCTGTAAAGGATGTATGT+GGG + chr2_1:76839587-76839606 Msa0226330:CDS 40.0%
AAACTCCTCTTTCGCAACAA+TGG - chr2_1:76840099-76840118 None:intergenic 40.0%
CTCATTCAAAACTCAGTAGG+AGG - chr2_1:76840220-76840239 None:intergenic 40.0%
GAGCATCTTGTGACTTAGAA+TGG + chr2_1:76840287-76840306 Msa0226330:three_prime_UTR 40.0%
ATCATACAAAGAGGTTTGCC+TGG - chr2_1:76840326-76840345 None:intergenic 40.0%
!! TTTGTTCTCTAGAATGGTGC+AGG + chr2_1:76840348-76840367 Msa0226330:three_prime_UTR 40.0%
ACTCCGGTAAGCAAAGCAAA+AGG + chr2_1:76835993-76836012 Msa0226330:five_prime_UTR 45.0%
TTCGATGAGGATATTGCCCT+CGG - chr2_1:76836076-76836095 None:intergenic 45.0%
AGGGCAATATCCTCATCGAA+CGG + chr2_1:76836076-76836095 Msa0226330:CDS 45.0%
AAGTCTAGTGCGCTTTACCT+AGG - chr2_1:76836993-76837012 None:intergenic 45.0%
TAGGTAAAGCGCACTAGACT+TGG + chr2_1:76836992-76837011 Msa0226330:intron 45.0%
GCAATGTAAGCTGCAAGCTT+AGG + chr2_1:76837083-76837102 Msa0226330:intron 45.0%
GGTTCGCAACTTAGCTAAAG+TGG - chr2_1:76837192-76837211 None:intergenic 45.0%
! TTTTCATGGAGTTCCTGCAG+AGG + chr2_1:76837796-76837815 Msa0226330:CDS 45.0%
CCGTACACATGACTTGAGAA+AGG - chr2_1:76837931-76837950 None:intergenic 45.0%
CAGTATATACGTTGTGGGGA+AGG + chr2_1:76838319-76838338 Msa0226330:CDS 45.0%
!! GGACTGTTGGTAACAAGGTT+AGG - chr2_1:76838778-76838797 None:intergenic 45.0%
CTTCTCCTCATGCTGTCAAT+TGG + chr2_1:76838974-76838993 Msa0226330:intron 45.0%
TGCAGGATGGACAAGATTCT+GGG - chr2_1:76839004-76839023 None:intergenic 45.0%
!!! GTGGATGGACGCTAGTTTTA+TGG - chr2_1:76839041-76839060 None:intergenic 45.0%
AACAGAGCAACAGTTGTGGA+TGG - chr2_1:76839056-76839075 None:intergenic 45.0%
AGGAAACAGAGCAACAGTTG+TGG - chr2_1:76839060-76839079 None:intergenic 45.0%
!! AACGAGAATGGTGGATTGAG+GGG - chr2_1:76839128-76839147 None:intergenic 45.0%
GCTATCAGGTGAACTAGTAG+GGG + chr2_1:76839256-76839275 Msa0226330:intron 45.0%
!! TTGTTTTTCTCCAGTGTCGG+AGG + chr2_1:76839546-76839565 Msa0226330:intron 45.0%
GTAAAGATAACCTCCGACAC+TGG - chr2_1:76839559-76839578 None:intergenic 45.0%
CGCCGTTTCCTTGATAAGTA+TGG + chr2_1:76839625-76839644 Msa0226330:CDS 45.0%
CTTTCGCAACAATGGAACAG+AGG - chr2_1:76840091-76840110 None:intergenic 45.0%
CTGTTCCATTGTTGCGAAAG+AGG + chr2_1:76840091-76840110 Msa0226330:intron 45.0%
AATCTGCAGTTTGAGTCGTG+TGG + chr2_1:76840263-76840282 Msa0226330:three_prime_UTR 45.0%
AATGGCATGTAACCAAAGCC+AGG + chr2_1:76840305-76840324 Msa0226330:three_prime_UTR 45.0%
AGTGTACTCACCGTTCGATG+AGG - chr2_1:76836089-76836108 None:intergenic 50.0%
TCTGATAGGGGCTACCATTG+CGG - chr2_1:76836965-76836984 None:intergenic 50.0%
GCCCCTATCAGATAAAGCCT+AGG + chr2_1:76836973-76836992 Msa0226330:intron 50.0%
TGGAGATTCGTGCATCCTCT+CGG + chr2_1:76837012-76837031 Msa0226330:intron 50.0%
CTGCAAGCTTAGGCTTTCTC+CGG + chr2_1:76837093-76837112 Msa0226330:intron 50.0%
GGGAGTCTATATCAGCTGAC+CGG - chr2_1:76837115-76837134 None:intergenic 50.0%
CCAAGAAAGAACGCCAGTGT+AGG - chr2_1:76837826-76837845 None:intergenic 50.0%
CCTACACTGGCGTTCTTTCT+TGG + chr2_1:76837823-76837842 Msa0226330:CDS 50.0%
ATTGTTGTGCCTAGCACCTG+TGG + chr2_1:76838946-76838965 Msa0226330:intron 50.0%
ATGAGGAGAAGCAAAGCCAC+AGG - chr2_1:76838965-76838984 None:intergenic 50.0%
GGAACCCAATTGACAGCATG+AGG - chr2_1:76838982-76839001 None:intergenic 50.0%
GCAGGATGGACAAGATTCTG+GGG - chr2_1:76839003-76839022 None:intergenic 50.0%
GTGCAGGATGGACAAGATTC+TGG - chr2_1:76839005-76839024 None:intergenic 50.0%
TGCATGAGTCACTCGGCAAT+TGG - chr2_1:76839416-76839435 None:intergenic 50.0%
TGGAAGGTGAGAAGACATGC+CGG + chr2_1:76839679-76839698 Msa0226330:intron 50.0%
CAAAGAGGTTTGCCTGGCTT+TGG - chr2_1:76840320-76840339 None:intergenic 50.0%
!! CGTTGGCAAAAAGCACCGCA+AGG - chr2_1:76836053-76836072 None:intergenic 55.0%
!! GTGCTTTTTGCCAACGCCGA+GGG + chr2_1:76836057-76836076 Msa0226330:CDS 55.0%
ATCTCACTCTCGACCCGCAA+TGG + chr2_1:76836948-76836967 Msa0226330:intron 55.0%
CTGATAGGGGCTACCATTGC+GGG - chr2_1:76836964-76836983 None:intergenic 55.0%
ATTCGTGCATCCTCTCGGAG+AGG + chr2_1:76837017-76837036 Msa0226330:intron 55.0%
TTCGTGCATCCTCTCGGAGA+GGG + chr2_1:76837018-76837037 Msa0226330:intron 55.0%
AGAGTTTGTCCCTCTCCGAG+AGG - chr2_1:76837030-76837049 None:intergenic 55.0%
!! GTCAAGCTTTGAAGGTGCCG+CGG + chr2_1:76837061-76837080 Msa0226330:intron 55.0%
GCTTGCAGCTTACATTGCCG+CGG - chr2_1:76837081-76837100 None:intergenic 55.0%
GAAGCAAAGCCACAGGTGCT+AGG - chr2_1:76838958-76838977 None:intergenic 55.0%
AAGGAAACGGCGCTCAGTTG+GGG - chr2_1:76839617-76839636 None:intergenic 55.0%
CAAGGAAACGGCGCTCAGTT+GGG - chr2_1:76839618-76839637 None:intergenic 55.0%
TCAAGGAAACGGCGCTCAGT+TGG - chr2_1:76839619-76839638 None:intergenic 55.0%
!! TCTCTAGAATGGTGCAGGCG+AGG + chr2_1:76840353-76840372 Msa0226330:three_prime_UTR 55.0%
! GTGCAGGCGAGGATTTTGCT+CGG + chr2_1:76840364-76840383 Msa0226330:three_prime_UTR 55.0%
!! GGTGCTTTTTGCCAACGCCG+AGG + chr2_1:76836056-76836075 Msa0226330:CDS 60.0%
GAGGATATTGCCCTCGGCGT+TGG - chr2_1:76836070-76836089 None:intergenic 60.0%
AGGAAACGGCGCTCAGTTGG+GGG - chr2_1:76839616-76839635 None:intergenic 60.0%
CAGTGTAGGCGCTCCTCTGC+AGG - chr2_1:76837812-76837831 None:intergenic 65.0%
!! CTGCAGAGGAGCGCCTACAC+TGG + chr2_1:76837810-76837829 Msa0226330:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76835877 76840565 76835877 ID=Msa0226330;Name=Msa0226330
chr2_1 mRNA 76835877 76840565 76835877 ID=Msa0226330-mRNA-1;Parent=Msa0226330;Name=Msa0226330-mRNA-1;_AED=0.12;_eAED=0.12;_QI=168|1|1|1|1|1|5|331|147
chr2_1 exon 76835877 76836097 76835877 ID=Msa0226330-mRNA-1:exon:23230;Parent=Msa0226330-mRNA-1
chr2_1 exon 76837796 76837909 76837796 ID=Msa0226330-mRNA-1:exon:23231;Parent=Msa0226330-mRNA-1
chr2_1 exon 76838283 76838362 76838283 ID=Msa0226330-mRNA-1:exon:23232;Parent=Msa0226330-mRNA-1
chr2_1 exon 76839560 76839684 76839560 ID=Msa0226330-mRNA-1:exon:23233;Parent=Msa0226330-mRNA-1
chr2_1 exon 76840163 76840565 76840163 ID=Msa0226330-mRNA-1:exon:23234;Parent=Msa0226330-mRNA-1
chr2_1 five_prime_UTR 76835877 76836044 76835877 ID=Msa0226330-mRNA-1:five_prime_utr;Parent=Msa0226330-mRNA-1
chr2_1 CDS 76836045 76836097 76836045 ID=Msa0226330-mRNA-1:cds;Parent=Msa0226330-mRNA-1
chr2_1 CDS 76837796 76837909 76837796 ID=Msa0226330-mRNA-1:cds;Parent=Msa0226330-mRNA-1
chr2_1 CDS 76838283 76838362 76838283 ID=Msa0226330-mRNA-1:cds;Parent=Msa0226330-mRNA-1
chr2_1 CDS 76839560 76839684 76839560 ID=Msa0226330-mRNA-1:cds;Parent=Msa0226330-mRNA-1
chr2_1 CDS 76840163 76840234 76840163 ID=Msa0226330-mRNA-1:cds;Parent=Msa0226330-mRNA-1
chr2_1 three_prime_UTR 76840235 76840565 76840235 ID=Msa0226330-mRNA-1:three_prime_utr;Parent=Msa0226330-mRNA-1
Gene Sequence

>Msa0226330

ATGATCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTCATCGAACGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTCTTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAGAACTTCTAGTTGCTTGCCACAAGTCAGTCTATATTGTATACACAGTACTTGGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGCTTTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTGGGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATGGAAGGGATATCTGGAAAATACGGAAAAAGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTTTTGA

Protein sequence

>Msa0226330

MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYIVYTVLGDVSIYVVGKDAYDELALSEVIFTITSAVKDVCGKPPTERRFLDKYGRICLCLDEIVWKGYLENTEKDRIKRLIRLKPPTEF*