AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008090 MtrunA17_Chr1g0147041 99.399 333 2 0 1 333 1 333 0.0 699
Msa0008090 MtrunA17_Chr3g0126851 90.390 333 23 2 1 333 1 324 0.0 606
Msa0008090 MtrunA17_Chr8g0346801 79.456 331 46 3 3 333 1 309 0.0 543
Msa0008090 MtrunA17_Chr7g0275701 78.361 305 50 4 30 333 34 323 8.40e-180 500
Msa0008090 MtrunA17_Chr3g0083571 83.333 258 43 0 62 319 47 304 2.98e-168 470
Msa0008090 MtrunA17_Chr8g0352701 76.208 269 60 1 55 319 36 304 4.14e-161 452
Msa0008090 MtrunA17_Chr7g0258941 75.281 267 66 0 52 318 43 309 4.20e-155 437
Msa0008090 MtrunA17_Chr1g0175721 70.103 291 80 1 36 319 19 309 2.60e-154 435
Msa0008090 MtrunA17_Chr4g0051351 26.695 236 158 7 45 279 76 297 5.70e-20 89.0
Msa0008090 MtrunA17_Chr5g0433631 31.928 166 107 3 69 234 34 193 1.28e-19 88.2
Msa0008090 MtrunA17_Chr7g0223111 27.273 220 149 5 58 276 26 235 2.40e-19 87.4
Msa0008090 MtrunA17_Chr5g0428191 33.094 139 91 2 68 205 11 148 8.63e-18 82.8
Msa0008090 MtrunA17_Chr5g0433541 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0008090 MtrunA17_Chr5g0433551 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0008090 MtrunA17_Chr5g0433411 25.670 261 177 7 52 311 17 261 3.17e-16 78.6
Msa0008090 MtrunA17_Chr5g0433661 31.544 149 97 2 48 193 25 171 4.80e-16 78.2
Msa0008090 MtrunA17_Chr5g0424971 29.861 144 95 4 58 200 8 146 1.39e-15 76.6
Msa0008090 MtrunA17_Chr1g0169381 35.345 116 72 2 68 183 11 123 3.60e-15 72.0
Msa0008090 MtrunA17_Chr5g0433531 32.768 177 103 5 63 234 6 171 4.86e-15 74.7
Msa0008090 MtrunA17_Chr2g0298951 33.628 113 70 2 84 193 9 119 3.56e-14 72.0
Msa0008090 MtrunA17_Chr7g0259431 37.000 100 61 1 84 183 9 106 2.44e-13 69.7
Msa0008090 MtrunA17_Chr5g0433521 30.128 156 93 5 84 234 23 167 4.47e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008090 AT3G61790.1 81.081 333 53 2 1 331 1 325 0.0 554
Msa0008090 AT4G27880.1 78.932 337 56 4 1 333 1 326 0.0 543
Msa0008090 AT3G58040.1 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0008090 AT3G58040.3 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0008090 AT2G41980.1 76.259 278 61 1 42 319 33 305 2.57e-160 450
Msa0008090 AT5G53360.1 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0008090 AT5G53360.3 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0008090 AT3G58040.2 63.889 216 60 3 10 222 14 214 1.98e-90 270
Msa0008090 AT5G53360.2 89.167 120 13 0 214 333 60 179 1.60e-78 238
Msa0008090 AT5G53360.2 57.692 52 14 1 33 84 16 59 2.08e-11 62.4
Msa0008090 AT3G13672.1 58.333 168 67 1 155 319 45 212 2.95e-71 221
Msa0008090 AT3G13672.2 50.769 195 66 2 155 319 45 239 1.16e-65 207
Msa0008090 AT5G37870.1 39.062 128 75 2 67 194 41 165 5.75e-25 102
Msa0008090 AT5G37930.1 34.595 185 111 3 11 187 45 227 1.49e-24 102
Msa0008090 AT5G37890.1 27.935 247 163 6 67 311 47 280 2.99e-22 95.1
Msa0008090 AT5G62800.1 26.667 255 159 7 67 311 39 275 6.98e-21 92.4
Msa0008090 AT5G62800.2 27.103 214 132 5 67 270 39 238 1.35e-20 90.9
Msa0008090 AT1G66660.2 40.179 112 65 1 67 178 102 211 3.68e-20 90.1
Msa0008090 AT1G66650.1 38.655 119 70 2 68 185 83 199 5.23e-20 89.7
Msa0008090 AT1G66620.1 35.878 131 80 2 55 183 26 154 5.80e-20 89.4
Msa0008090 AT1G66630.1 35.915 142 85 3 49 186 25 164 4.10e-19 86.7
Msa0008090 AT5G37910.1 35.537 121 76 1 67 187 34 152 5.04e-19 85.9
Msa0008090 AT1G66610.2 35.165 91 56 1 40 130 133 220 1.50e-13 69.7
Msa0008090 AT1G66610.2 40.299 67 40 0 67 133 52 118 2.39e-11 63.2
Msa0008090 AT1G66610.1 42.857 63 36 0 67 129 52 114 1.47e-11 65.1

Find 100 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGTATGGAAAGATTTC+TGG 0.159871 1_1:+11699747 None:intergenic
AACAATAATCATGGTGTTAT+TGG 0.169856 1_1:-11702858 Msa0008090:CDS
TGATAGGTATTTCATTGTTT+TGG 0.211856 1_1:-11699179 Msa0008090:intron
CCTCATAATTCAACGAAATA+TGG 0.309243 1_1:-11698949 Msa0008090:CDS
GTTGTGTAATAAACAAGATT+TGG 0.313626 1_1:-11698690 Msa0008090:three_prime_UTR
TGCTTCAGCTTGCTGTAGTA+TGG 0.315397 1_1:+11699735 None:intergenic
TAAGAGTCACAGGAAGAATA+TGG 0.339068 1_1:-11698887 Msa0008090:CDS
CGAAGGAATGCCATGTAAAC+TGG 0.349784 1_1:+11699110 None:intergenic
CATGGCATTCCTTCGTTTCA+TGG 0.350645 1_1:-11699102 Msa0008090:CDS
TCTCTCTCTTACCTAGTTTG+AGG 0.354784 1_1:+11703355 None:intergenic
AGCCTCGAGGTTGGGGCAAA+TGG 0.361379 1_1:-11699047 Msa0008090:CDS
ATAAAGCAAACCTGATGAAT+TGG 0.365377 1_1:+11702759 None:intergenic
CAAATGGAAGAAAACTCATT+TGG 0.371206 1_1:-11699031 Msa0008090:CDS
ACACATCAGCTGCAAAGATT+TGG 0.392931 1_1:+11698828 None:intergenic
ATACCTACAGCCTCGAGGTT+GGG 0.402306 1_1:-11699055 Msa0008090:CDS
GAAGATGAAGATTGTAATCA+TGG 0.408797 1_1:+11703246 None:intergenic
GGTTGTATTGTGAGAGAGAA+AGG 0.410368 1_1:+11703376 None:intergenic
TAATAAACAAGATTTGGAAC+TGG 0.421003 1_1:-11698684 Msa0008090:three_prime_UTR
AATGTATCCTCCAATTCATC+AGG 0.424313 1_1:-11702769 Msa0008090:intron
CCATATTTCGTTGAATTATG+AGG 0.425488 1_1:+11698949 None:intergenic
TAGGTGTCTGGCACTGGAAA+AGG 0.426106 1_1:-11699817 Msa0008090:CDS
TACATTGAATTGGTACAAAC+AGG 0.426249 1_1:+11702786 None:intergenic
CCATGCAAATACTACTCTCT+TGG 0.426909 1_1:-11699774 Msa0008090:CDS
TGTTTCTTCTTCTGATGGAA+TGG 0.427322 1_1:-11702976 Msa0008090:CDS
AGATATTAGGTGTCTGGCAC+TGG 0.427576 1_1:-11699823 Msa0008090:CDS
GGTATACAAACCCCACCATC+TGG 0.433787 1_1:+11698849 None:intergenic
GACAAGAGCTTGGAGATATT+AGG 0.446367 1_1:-11699836 Msa0008090:CDS
AATTGGAGGATACATTGAAT+TGG 0.448728 1_1:+11702776 None:intergenic
TTTCCTCGTTGCACATTTGA+GGG 0.453343 1_1:-11699637 Msa0008090:CDS
ATTTCCTCGTTGCACATTTG+AGG 0.454644 1_1:-11699638 Msa0008090:CDS
GAGTGTGTTTCTTCTTCTGA+TGG 0.455471 1_1:-11702981 Msa0008090:CDS
CAAAGTGAAGGCAGAAGTAT+TGG 0.460533 1_1:+11699156 None:intergenic
ACATTTGAGGGACGATCATA+AGG 0.461663 1_1:-11699625 Msa0008090:CDS
ATCTCCAAGCTCTTGTCTAC+AGG 0.469456 1_1:+11699842 None:intergenic
AAATGGAAGAAAACTCATTT+GGG 0.470132 1_1:-11699030 Msa0008090:CDS
CACTTTGAAGCTTTCCAGCT+AGG 0.473624 1_1:-11699140 Msa0008090:CDS
AAACTGGAGCCATGCCTAGC+TGG 0.474045 1_1:+11699126 None:intergenic
GCTTGGAGATATTAGGTGTC+TGG 0.474212 1_1:-11699829 Msa0008090:CDS
AAAATTGAAGAGAGAGGAAG+CGG 0.484028 1_1:-11703156 Msa0008090:five_prime_UTR
AAATTTCAAAGCCATCATCT+TGG 0.487024 1_1:+11698727 None:intergenic
ATGGCATTCCTTCGTTTCAT+GGG 0.491316 1_1:-11699101 Msa0008090:CDS
TACAAGTGTTCATGAGTTGT+TGG 0.494508 1_1:-11702814 Msa0008090:CDS
AAGAAGAAAATTGAAGAGAG+AGG 0.513631 1_1:-11703162 Msa0008090:five_prime_UTR
TCTTCATTGAAACCTCGTAA+TGG 0.515536 1_1:-11702885 Msa0008090:CDS
TCACAATACAACCTCAAACT+AGG 0.516991 1_1:-11703366 Msa0008090:five_prime_UTR
AATGGAGGAAACAATAATCA+TGG 0.519050 1_1:-11702867 Msa0008090:CDS
TACCTACAGCCTCGAGGTTG+GGG 0.519942 1_1:-11699054 Msa0008090:CDS
CAGTTCCTTCCTATCACCAC+CGG 0.520559 1_1:+11698914 None:intergenic
TAAAGATTAATAAAATTGAA+AGG 0.526678 1_1:+11703464 None:intergenic
CCATACACTTGTCCTTATGC+TGG 0.527298 1_1:-11699690 Msa0008090:CDS
GAACTGAAATTAAGAGTCAC+AGG 0.528820 1_1:-11698897 Msa0008090:CDS
AAGAAAATGAAAATAAGAGA+AGG 0.532624 1_1:+11703224 None:intergenic
AAGCAAACCTGATGAATTGG+AGG 0.534378 1_1:+11702762 None:intergenic
GAGCACTCTGATCCAGCATA+AGG 0.535134 1_1:+11699678 None:intergenic
AGGCATGGCTCCAGTTTACA+TGG 0.535252 1_1:-11699120 Msa0008090:CDS
CCAGCATAAGGACAAGTGTA+TGG 0.536800 1_1:+11699690 None:intergenic
AGAGTAAGACACCAAGATGA+TGG 0.543839 1_1:-11698738 Msa0008090:three_prime_UTR
TGATGATGTTGTTGATGATG+TGG 0.544739 1_1:+11702921 None:intergenic
TGAAGCTTTCCAGCTAGGCA+TGG 0.545484 1_1:-11699135 Msa0008090:CDS
TTTCTCCGGTGGTGATAGGA+AGG 0.551436 1_1:-11698919 Msa0008090:CDS
TATTACAACATACACAAAGT+TGG 0.551763 1_1:+11698760 None:intergenic
AACAACAGAATCCAGATGGT+GGG 0.552181 1_1:-11698860 Msa0008090:CDS
AATAAACAAGATTTGGAACT+GGG 0.555763 1_1:-11698683 Msa0008090:three_prime_UTR
GAGAAAGGAACAAGAACCGT+TGG 0.556027 1_1:+11703391 None:intergenic
TATACCTACAGCCTCGAGGT+TGG 0.558753 1_1:-11699056 Msa0008090:CDS
AACTCATGAACACTTGTAGC+AGG 0.562232 1_1:+11702819 None:intergenic
GGATCAGAGTGCTCTGCTGT+TGG 0.562708 1_1:-11699669 Msa0008090:CDS
CCGACCTGTAGACAAGAGCT+TGG 0.568050 1_1:-11699846 Msa0008090:CDS
GTGAAGTAGAGAATGCTACT+TGG 0.568738 1_1:-11699548 Msa0008090:CDS
TGGGAGACGAGAACGAGGCT+CGG 0.575368 1_1:-11699082 Msa0008090:CDS
TTCCATTTGCCCCAACCTCG+AGG 0.594074 1_1:+11699045 None:intergenic
AAGATGAAGATTGTAATCAT+GGG 0.595284 1_1:+11703247 None:intergenic
GTGGATGAAGAATACGATGT+TGG 0.600992 1_1:+11702940 None:intergenic
CCAAGAGAGTAGTATTTGCA+TGG 0.602573 1_1:+11699774 None:intergenic
TGGAAGAAAACTCATTTGGG+AGG 0.602668 1_1:-11699027 Msa0008090:CDS
TCATTGAAACCTCGTAATGG+AGG 0.608179 1_1:-11702882 Msa0008090:CDS
GAACAACAGAATCCAGATGG+TGG 0.613047 1_1:-11698861 Msa0008090:CDS
GCTGGAAAGCTTCAAAGTGA+AGG 0.613710 1_1:+11699144 None:intergenic
ACAACAGAATCCAGATGGTG+GGG 0.614888 1_1:-11698859 Msa0008090:CDS
GGAAGAAAACTCATTTGGGA+GGG 0.623722 1_1:-11699026 Msa0008090:CDS
CATAAGGTGGACATGCACAC+AGG 0.632218 1_1:-11699609 Msa0008090:CDS
AATAAATCATCATAATCCAA+CGG 0.635358 1_1:-11703407 Msa0008090:five_prime_UTR
TTTCATGGGAGACGAGAACG+AGG 0.636980 1_1:-11699087 Msa0008090:CDS
GATTTGACTTCACATAACGA+TGG 0.637615 1_1:+11699574 None:intergenic
TGTGTTCCACATGTAAAACA+AGG 0.639674 1_1:-11699884 Msa0008090:CDS
TGCCCCAACCTCGAGGCTGT+AGG 0.640496 1_1:+11699052 None:intergenic
AAAGAACAACAGAATCCAGA+TGG 0.642877 1_1:-11698864 Msa0008090:CDS
TTATTGTTTCCTCCATTACG+AGG 0.648247 1_1:+11702873 None:intergenic
AAAGTTCGAGATAGTCATGA+CGG 0.664593 1_1:-11698972 Msa0008090:CDS
CCAAGCTCTTGTCTACAGGT+CGG 0.665523 1_1:+11699846 None:intergenic
GCTTTCTTGCAGTGCCACAA+CGG 0.673342 1_1:-11699915 Msa0008090:intron
TCTCGTCTCCCATGAAACGA+AGG 0.676802 1_1:+11699093 None:intergenic
TGGCTATCGCGGATACTCCG+TGG 0.686071 1_1:+11698999 None:intergenic
TTTGAGGGACGATCATAAGG+TGG 0.697457 1_1:-11699622 Msa0008090:CDS
GTGTTCCACATGTAAAACAA+GGG 0.699010 1_1:-11699883 Msa0008090:CDS
GAACTATACCTACAGCCTCG+AGG 0.705784 1_1:-11699060 Msa0008090:CDS
CGTCCCTCAAATGTGCAACG+AGG 0.714067 1_1:+11699634 None:intergenic
GTAGCATTCTCTACTTCACG+CGG 0.721685 1_1:+11699552 None:intergenic
AACACAATGTGTGACCGTTG+TGG 0.724979 1_1:+11699901 None:intergenic
TCATTTGGGAGGGTACACCA+CGG 0.762771 1_1:-11699016 Msa0008090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGATTAATAAAATTGAA+AGG + chr1_1:11698660-11698679 None:intergenic 10.0%
!!! TTTTAGTTATTTTTTTAAAC+TGG - chr1_1:11701351-11701370 Msa0008090:intron 10.0%
!!! TTTAGTTATTTTTTTAAACT+GGG - chr1_1:11701352-11701371 Msa0008090:intron 10.0%
!! AATATAATAATACTAATAAG+AGG - chr1_1:11701722-11701741 Msa0008090:intron 10.0%
!!! TAATTTTTGATTTTGAAATC+TGG - chr1_1:11699057-11699076 Msa0008090:CDS 15.0%
!!! AATTTTTGATTTTGAAATCT+GGG - chr1_1:11699058-11699077 Msa0008090:CDS 15.0%
!!! TTGATTATTTTTTGTTACAA+TGG - chr1_1:11699103-11699122 Msa0008090:CDS 15.0%
!! TAATTCTATATTCATAAATC+AGG + chr1_1:11699608-11699627 None:intergenic 15.0%
!!! TTGTTTTATAGAGAAATATT+CGG - chr1_1:11699889-11699908 Msa0008090:CDS 15.0%
!! CATTACAATTCAAAATTAAT+GGG + chr1_1:11701794-11701813 None:intergenic 15.0%
!! AAAAAATAAAAAACTTTCCA+AGG + chr1_1:11701877-11701896 None:intergenic 15.0%
!! AATATTAAGTAAAATTCGAA+GGG + chr1_1:11702082-11702101 None:intergenic 15.0%
!! AAATATTAAGTAAAATTCGA+AGG + chr1_1:11702083-11702102 None:intergenic 15.0%
!! CAAAAAATCTATATTTGTAA+CGG + chr1_1:11702669-11702688 None:intergenic 15.0%
!!! TTGTCTCAAATTTTTTATTA+TGG - chr1_1:11703463-11703482 Msa0008090:five_prime_UTR 15.0%
!!! TGTCTCAAATTTTTTATTAT+GGG - chr1_1:11703464-11703483 Msa0008090:five_prime_UTR 15.0%
!! AATAAATCATCATAATCCAA+CGG - chr1_1:11698714-11698733 Msa0008090:three_prime_UTR 20.0%
!! AAGAAAATGAAAATAAGAGA+AGG + chr1_1:11698900-11698919 None:intergenic 20.0%
!!! TTTCTTCGTTTTTTTTTTCT+GGG + chr1_1:11698938-11698957 None:intergenic 20.0%
!!! TTTTCTTCGTTTTTTTTTTC+TGG + chr1_1:11698939-11698958 None:intergenic 20.0%
!!! AAATTTTCGATTTTGAAATC+TGG - chr1_1:11699026-11699045 Msa0008090:CDS 20.0%
!!! AATTTTCGATTTTGAAATCT+GGG - chr1_1:11699027-11699046 Msa0008090:CDS 20.0%
!!! ATTTTTTGTTACAATGGATT+TGG - chr1_1:11699109-11699128 Msa0008090:CDS 20.0%
!! ATGAATATAGAATTAGTGAA+AGG - chr1_1:11699613-11699632 Msa0008090:CDS 20.0%
!! TTACTTATATTTGTAAGGTT+AGG - chr1_1:11699815-11699834 Msa0008090:CDS 20.0%
!!! TGTTTTATAGAGAAATATTC+GGG - chr1_1:11699890-11699909 Msa0008090:CDS 20.0%
!!! GCTTAAAATTTTAATAGTGT+TGG - chr1_1:11700333-11700352 Msa0008090:intron 20.0%
!! AATGCAATTTATATAGAGAA+TGG - chr1_1:11701182-11701201 Msa0008090:intron 20.0%
!! TACAACAATTAATCACAAAT+TGG - chr1_1:11701270-11701289 Msa0008090:intron 20.0%
!! ACAACAATTAATCACAAATT+GGG - chr1_1:11701271-11701290 Msa0008090:intron 20.0%
!! TTATTGAATAAAGAAGGAAT+CGG + chr1_1:11701674-11701693 None:intergenic 20.0%
!! GCATTACAATTCAAAATTAA+TGG + chr1_1:11701795-11701814 None:intergenic 20.0%
!! ATTAGTTAAATAGAGACTAT+TGG + chr1_1:11701846-11701865 None:intergenic 20.0%
!! AATAGTCTCTATTTAACTAA+TGG - chr1_1:11701845-11701864 Msa0008090:intron 20.0%
!! AATACCTATCAAAGAAAAAA+TGG + chr1_1:11702933-11702952 None:intergenic 20.0%
!!! TTTTTATTATGGGATTAAAG+TGG - chr1_1:11703474-11703493 Msa0008090:five_prime_UTR 20.0%
! AAGATGAAGATTGTAATCAT+GGG + chr1_1:11698877-11698896 None:intergenic 25.0%
!!! ATTTCGACGTTTTTTTATCT+AGG + chr1_1:11699010-11699029 None:intergenic 25.0%
!!! GTATGTTCTAGTTTTTGATT+TGG - chr1_1:11699080-11699099 Msa0008090:CDS 25.0%
!!! AACAATAATCATGGTGTTAT+TGG - chr1_1:11699263-11699282 Msa0008090:intron 25.0%
!!! TAGTGTTATTGAGTTGATTT+GGG - chr1_1:11699495-11699514 Msa0008090:intron 25.0%
! TTAAGCTTCCACTAATAATT+TGG - chr1_1:11699715-11699734 Msa0008090:CDS 25.0%
! AGTCGTTACTTATATTTGTA+AGG - chr1_1:11699810-11699829 Msa0008090:CDS 25.0%
! TATATTTGTAAGGTTAGGTT+TGG - chr1_1:11699820-11699839 Msa0008090:CDS 25.0%
!! TGAACTATGTGACAAAATTT+TGG - chr1_1:11700070-11700089 Msa0008090:intron 25.0%
! ATGAAGTAATCTAATGGTAA+CGG + chr1_1:11700685-11700704 None:intergenic 25.0%
! AACAATGTGTAGTAAAATGT+GGG + chr1_1:11700889-11700908 None:intergenic 25.0%
! AAACAATGTGTAGTAAAATG+TGG + chr1_1:11700890-11700909 None:intergenic 25.0%
! CAAATTCCCTCAAATATATT+GGG + chr1_1:11701138-11701157 None:intergenic 25.0%
! ACAAATTCCCTCAAATATAT+TGG + chr1_1:11701139-11701158 None:intergenic 25.0%
! AATTTCTTGAATACTGATCT+TGG - chr1_1:11701205-11701224 Msa0008090:intron 25.0%
!! ATTATTTCGGTGAAATTTTG+TGG - chr1_1:11701317-11701336 Msa0008090:intron 25.0%
! AATGTGAAAATAAACCTTAC+TGG + chr1_1:11701946-11701965 None:intergenic 25.0%
!! TTTTATTGATCTTTTAGCGA+TGG - chr1_1:11702022-11702041 Msa0008090:intron 25.0%
!! TTTATTGATCTTTTAGCGAT+GGG - chr1_1:11702023-11702042 Msa0008090:intron 25.0%
!! TAATGTGCAACTTTGTATTT+TGG - chr1_1:11702731-11702750 Msa0008090:intron 25.0%
! ATCAAAGAAAAAATGGAAGT+TGG + chr1_1:11702926-11702945 None:intergenic 25.0%
!!! ACTTCCATTTTTTCTTTGAT+AGG - chr1_1:11702926-11702945 Msa0008090:CDS 25.0%
!! TGATAGGTATTTCATTGTTT+TGG - chr1_1:11702942-11702961 Msa0008090:CDS 25.0%
! AAATGGAAGAAAACTCATTT+GGG - chr1_1:11703091-11703110 Msa0008090:five_prime_UTR 25.0%
! TATTACAACATACACAAAGT+TGG + chr1_1:11703364-11703383 None:intergenic 25.0%
! GTTGTGTAATAAACAAGATT+TGG - chr1_1:11703431-11703450 Msa0008090:five_prime_UTR 25.0%
!! TAATAAACAAGATTTGGAAC+TGG - chr1_1:11703437-11703456 Msa0008090:five_prime_UTR 25.0%
!! AATAAACAAGATTTGGAACT+GGG - chr1_1:11703438-11703457 Msa0008090:five_prime_UTR 25.0%
GAAGATGAAGATTGTAATCA+TGG + chr1_1:11698878-11698897 None:intergenic 30.0%
AAGAAGAAAATTGAAGAGAG+AGG - chr1_1:11698959-11698978 Msa0008090:CDS 30.0%
AATGGAGGAAACAATAATCA+TGG - chr1_1:11699254-11699273 Msa0008090:intron 30.0%
TACATTGAATTGGTACAAAC+AGG + chr1_1:11699338-11699357 None:intergenic 30.0%
AATTGGAGGATACATTGAAT+TGG + chr1_1:11699348-11699367 None:intergenic 30.0%
ATAAAGCAAACCTGATGAAT+TGG + chr1_1:11699365-11699384 None:intergenic 30.0%
TATGTGATTGATTGCATGTT+AGG - chr1_1:11699422-11699441 Msa0008090:intron 30.0%
ATGTGATTGATTGCATGTTA+GGG - chr1_1:11699423-11699442 Msa0008090:intron 30.0%
!!! ATGTTAGGGTTGTTTTTGTA+TGG - chr1_1:11699437-11699456 Msa0008090:intron 30.0%
!! TATGGTTATTGTGACTTGTT+TGG - chr1_1:11699455-11699474 Msa0008090:intron 30.0%
!! GTAGTGTTATTGAGTTGATT+TGG - chr1_1:11699494-11699513 Msa0008090:intron 30.0%
!! AGTGTTATTGAGTTGATTTG+GGG - chr1_1:11699496-11699515 Msa0008090:intron 30.0%
TAAACCTCAAAACCAAATTC+AGG + chr1_1:11699541-11699560 None:intergenic 30.0%
TATTGTGTAATTAGCAAGCT+AGG - chr1_1:11699564-11699583 Msa0008090:CDS 30.0%
! TGTTCTTAGAGTTTTCGTTT+AGG - chr1_1:11699650-11699669 Msa0008090:CDS 30.0%
CGAAAAGTCCAAATTATTAG+TGG + chr1_1:11699726-11699745 None:intergenic 30.0%
ATGCTTAATCAGTGCATTTA+AGG - chr1_1:11699747-11699766 Msa0008090:CDS 30.0%
!! TTAGGTTTGGATTTTAGTCA+AGG - chr1_1:11699833-11699852 Msa0008090:CDS 30.0%
CTATAAAACAAACGTCAGTT+TGG + chr1_1:11699880-11699899 None:intergenic 30.0%
ACAATTGAAAATTGATCAGC+TGG - chr1_1:11699958-11699977 Msa0008090:intron 30.0%
AGTCTGATCTTTATTGAACT+AGG + chr1_1:11700002-11700021 None:intergenic 30.0%
GTTCAATAAAGATCAGACTT+CGG - chr1_1:11700003-11700022 Msa0008090:intron 30.0%
ACATAAGTTGTAGCTAATCT+CGG - chr1_1:11700139-11700158 Msa0008090:intron 30.0%
!! GAGCATTTTAACAAGCTATA+CGG + chr1_1:11700167-11700186 None:intergenic 30.0%
CCAAAGCAATACATCTAAAA+TGG + chr1_1:11700264-11700283 None:intergenic 30.0%
! CCATTTTAGATGTATTGCTT+TGG - chr1_1:11700261-11700280 Msa0008090:intron 30.0%
TTAGATGTATTGCTTTGGTT+TGG - chr1_1:11700266-11700285 Msa0008090:intron 30.0%
! TAGATGTATTGCTTTGGTTT+GGG - chr1_1:11700267-11700286 Msa0008090:intron 30.0%
!! TGGATAAAGGCACTAAAAAA+TGG + chr1_1:11700522-11700541 None:intergenic 30.0%
TGAAGTAATCTAATGGTAAC+GGG + chr1_1:11700684-11700703 None:intergenic 30.0%
GAATGCATGAAGTAATCTAA+TGG + chr1_1:11700691-11700710 None:intergenic 30.0%
GGTTAAAAAAAAACCAGAAG+CGG + chr1_1:11700796-11700815 None:intergenic 30.0%
TAACAAAAACAATGGCTAGA+AGG + chr1_1:11700861-11700880 None:intergenic 30.0%
TTCACCATGGTATTCAAAAT+CGG - chr1_1:11700945-11700964 Msa0008090:intron 30.0%
! CTTAGAATCGTACACTTTTA+CGG - chr1_1:11700977-11700996 Msa0008090:intron 30.0%
ACACAACCCAATATATTTGA+GGG - chr1_1:11701129-11701148 Msa0008090:intron 30.0%
TAATGTTCATTGTATTGGGA+AGG - chr1_1:11701246-11701265 Msa0008090:intron 30.0%
AAATAATTGCTGTAAATGGC+TGG + chr1_1:11701304-11701323 None:intergenic 30.0%
GCCATTTACAGCAATTATTT+CGG - chr1_1:11701304-11701323 Msa0008090:intron 30.0%
ACCGAAATAATTGCTGTAAA+TGG + chr1_1:11701308-11701327 None:intergenic 30.0%
TTACGAATTATGATTCTGCT+TGG - chr1_1:11701484-11701503 Msa0008090:intron 30.0%
TCTCCAATTTAATATCCAGT+GGG - chr1_1:11701621-11701640 Msa0008090:intron 30.0%
TTTCCCACTGGATATTAAAT+TGG + chr1_1:11701627-11701646 None:intergenic 30.0%
CGACAGTTATTGAATAAAGA+AGG + chr1_1:11701680-11701699 None:intergenic 30.0%
ATAAGAGGTCTAACAGATTT+CGG - chr1_1:11701737-11701756 Msa0008090:intron 30.0%
AAAATAACAAATCGTACGAG+AGG + chr1_1:11701770-11701789 None:intergenic 30.0%
TATTAAGGGAGTAATGTATG+TGG - chr1_1:11701896-11701915 Msa0008090:intron 30.0%
!! GCTTAGTTCTTTTCTCTAAT+TGG - chr1_1:11701974-11701993 Msa0008090:intron 30.0%
! TTATTGATCTTTTAGCGATG+GGG - chr1_1:11702024-11702043 Msa0008090:intron 30.0%
CAAATGGAAGAAAACTCATT+TGG - chr1_1:11703090-11703109 Msa0008090:five_prime_UTR 30.0%
CCATATTTCGTTGAATTATG+AGG + chr1_1:11703175-11703194 None:intergenic 30.0%
CCTCATAATTCAACGAAATA+TGG - chr1_1:11703172-11703191 Msa0008090:five_prime_UTR 30.0%
AAATTTCAAAGCCATCATCT+TGG + chr1_1:11703397-11703416 None:intergenic 30.0%
TCACAATACAACCTCAAACT+AGG - chr1_1:11698755-11698774 Msa0008090:three_prime_UTR 35.0%
AAAATTGAAGAGAGAGGAAG+CGG - chr1_1:11698965-11698984 Msa0008090:CDS 35.0%
TGTTTCTTCTTCTGATGGAA+TGG - chr1_1:11699145-11699164 Msa0008090:CDS 35.0%
!! TGATGATGTTGTTGATGATG+TGG + chr1_1:11699203-11699222 None:intergenic 35.0%
TCTTCATTGAAACCTCGTAA+TGG - chr1_1:11699236-11699255 Msa0008090:intron 35.0%
TTATTGTTTCCTCCATTACG+AGG + chr1_1:11699251-11699270 None:intergenic 35.0%
TACAAGTGTTCATGAGTTGT+TGG - chr1_1:11699307-11699326 Msa0008090:intron 35.0%
AATGTATCCTCCAATTCATC+AGG - chr1_1:11699352-11699371 Msa0008090:intron 35.0%
!!! ATGTCCTGAATTTGGTTTTG+AGG - chr1_1:11699534-11699553 Msa0008090:intron 35.0%
AATCAGTGCATTTAAGGAAC+TGG - chr1_1:11699753-11699772 Msa0008090:CDS 35.0%
! CCATTGCGAGCATTTTTATA+AGG + chr1_1:11699789-11699808 None:intergenic 35.0%
CCTTATAAAAATGCTCGCAA+TGG - chr1_1:11699786-11699805 Msa0008090:CDS 35.0%
ATAGAGAAATATTCGGGCAA+AGG - chr1_1:11699896-11699915 Msa0008090:CDS 35.0%
!! TGTGACAAAATTTTGGCAAG+TGG - chr1_1:11700077-11700096 Msa0008090:intron 35.0%
!! ATAGCTTGTTAAAATGCTCC+AGG - chr1_1:11700168-11700187 Msa0008090:intron 35.0%
!!! ACTCTAAAGCATTTTCAACC+TGG + chr1_1:11700189-11700208 None:intergenic 35.0%
AGTTGTAGCATGTCTTTAGT+AGG - chr1_1:11700206-11700225 Msa0008090:intron 35.0%
GTTGTAGCATGTCTTTAGTA+GGG - chr1_1:11700207-11700226 Msa0008090:intron 35.0%
AATGGTCATGACATGACATA+TGG + chr1_1:11700246-11700265 None:intergenic 35.0%
!! AATAGTGTTGGTTATTGACC+TGG - chr1_1:11700345-11700364 Msa0008090:intron 35.0%
! GTCAAAAAGGCTTTAATACC+AGG + chr1_1:11700366-11700385 None:intergenic 35.0%
CTGAAACATTGAGAGCAATA+AGG + chr1_1:11700409-11700428 None:intergenic 35.0%
AAAGATTGTGCTGTGGATAA+AGG + chr1_1:11700535-11700554 None:intergenic 35.0%
TGTCATAAAAGATTGTGCTG+TGG + chr1_1:11700542-11700561 None:intergenic 35.0%
! GCACAATCTTTTATGACAGT+TGG - chr1_1:11700544-11700563 Msa0008090:intron 35.0%
!! AATCTAATGGTAACGGGTTT+AGG + chr1_1:11700678-11700697 None:intergenic 35.0%
GGGAACAGTAACAAAAACAA+TGG + chr1_1:11700869-11700888 None:intergenic 35.0%
! TAACAACACACTTTTCACCA+TGG - chr1_1:11700932-11700951 Msa0008090:intron 35.0%
!! AATCGTAATTTGCTAGCAGA+CGG - chr1_1:11701035-11701054 Msa0008090:intron 35.0%
CACACAACCCAATATATTTG+AGG - chr1_1:11701128-11701147 Msa0008090:intron 35.0%
! ATCTTGGAGAAGTATGACTT+TGG - chr1_1:11701221-11701240 Msa0008090:intron 35.0%
! TCTTGGAGAAGTATGACTTT+GGG - chr1_1:11701222-11701241 Msa0008090:intron 35.0%
TGGGCTAATGTTCATTGTAT+TGG - chr1_1:11701241-11701260 Msa0008090:intron 35.0%
GGGCTAATGTTCATTGTATT+GGG - chr1_1:11701242-11701261 Msa0008090:intron 35.0%
GTTGTGTTATGTGTTGGAAT+CGG + chr1_1:11701443-11701462 None:intergenic 35.0%
CTCTCCAATTTAATATCCAG+TGG - chr1_1:11701620-11701639 Msa0008090:intron 35.0%
TGAATAAAGAAGGAATCGGA+AGG + chr1_1:11701670-11701689 None:intergenic 35.0%
!!! ATGCTTTGTTTTATGTCCTC+TGG - chr1_1:11701811-11701830 Msa0008090:intron 35.0%
TTAACTAATGGTTGCTACCT+TGG - chr1_1:11701857-11701876 Msa0008090:intron 35.0%
AACATGAAGTAGTACCAGTA+AGG - chr1_1:11701929-11701948 Msa0008090:intron 35.0%
ACTTAGGAAGATGTCAAATG+AGG + chr1_1:11702135-11702154 None:intergenic 35.0%
!! AATCATGCTAATGTCGACTT+AGG + chr1_1:11702151-11702170 None:intergenic 35.0%
TGTGTTCCACATGTAAAACA+AGG - chr1_1:11702237-11702256 Msa0008090:intron 35.0%
GTGTTCCACATGTAAAACAA+GGG - chr1_1:11702238-11702257 Msa0008090:intron 35.0%
CTGTAGTATGGAAAGATTTC+TGG + chr1_1:11702377-11702396 None:intergenic 35.0%
! GATTTGACTTCACATAACGA+TGG + chr1_1:11702550-11702569 None:intergenic 35.0%
ACTGTCAGATCAAGATCAAA+TGG + chr1_1:11702785-11702804 None:intergenic 35.0%
! CATGACTATCTCGAACTTTT+CGG + chr1_1:11703148-11703167 None:intergenic 35.0%
AAAGTTCGAGATAGTCATGA+CGG - chr1_1:11703149-11703168 Msa0008090:five_prime_UTR 35.0%
!! AATATGGCCCTATTTTTCTC+CGG - chr1_1:11703188-11703207 Msa0008090:five_prime_UTR 35.0%
GAACTGAAATTAAGAGTCAC+AGG - chr1_1:11703224-11703243 Msa0008090:five_prime_UTR 35.0%
TAAGAGTCACAGGAAGAATA+TGG - chr1_1:11703234-11703253 Msa0008090:five_prime_UTR 35.0%
AAAGAACAACAGAATCCAGA+TGG - chr1_1:11703257-11703276 Msa0008090:five_prime_UTR 35.0%
GGTTGTATTGTGAGAGAGAA+AGG + chr1_1:11698748-11698767 None:intergenic 40.0%
TCTCTCTCTTACCTAGTTTG+AGG + chr1_1:11698769-11698788 None:intergenic 40.0%
TCATGGGTCGATGAAAAAAG+TGG + chr1_1:11698861-11698880 None:intergenic 40.0%
GAGTGTGTTTCTTCTTCTGA+TGG - chr1_1:11699140-11699159 Msa0008090:CDS 40.0%
GTGGATGAAGAATACGATGT+TGG + chr1_1:11699184-11699203 None:intergenic 40.0%
TCATTGAAACCTCGTAATGG+AGG - chr1_1:11699239-11699258 Msa0008090:intron 40.0%
AACTCATGAACACTTGTAGC+AGG + chr1_1:11699305-11699324 None:intergenic 40.0%
AAGCAAACCTGATGAATTGG+AGG + chr1_1:11699362-11699381 None:intergenic 40.0%
! ATTTGGGGCTTATGATGATG+AGG - chr1_1:11699511-11699530 Msa0008090:intron 40.0%
TGATGAGGATGTCCTGAATT+TGG - chr1_1:11699526-11699545 Msa0008090:intron 40.0%
AGATCAGACTTCGGACATAT+AGG - chr1_1:11700012-11700031 Msa0008090:intron 40.0%
TGCACTTCATCTCAAGAGAT+TGG + chr1_1:11700118-11700137 None:intergenic 40.0%
! TTAAAGCCTTTTTGACCGAG+TGG - chr1_1:11700370-11700389 Msa0008090:intron 40.0%
AAGATATTTCTCAGGCAAGG+TGG + chr1_1:11700745-11700764 None:intergenic 40.0%
ACCTTGCCTGAGAAATATCT+TGG - chr1_1:11700744-11700763 Msa0008090:intron 40.0%
ACCAAGATATTTCTCAGGCA+AGG + chr1_1:11700748-11700767 None:intergenic 40.0%
!! TTTTAACCACTTTTAGCCCG+TGG - chr1_1:11700808-11700827 Msa0008090:intron 40.0%
!! TTTAACCACTTTTAGCCCGT+GGG - chr1_1:11700809-11700828 Msa0008090:intron 40.0%
!! GCAACCGATTTTGAATACCA+TGG + chr1_1:11700952-11700971 None:intergenic 40.0%
TGCCACTAAACACGGTAATA+GGG + chr1_1:11701010-11701029 None:intergenic 40.0%
TTGCCACTAAACACGGTAAT+AGG + chr1_1:11701011-11701030 None:intergenic 40.0%
ATTGTGCTTGCCACTAAACA+CGG + chr1_1:11701018-11701037 None:intergenic 40.0%
ATTCACGTTCTGCAGATTCT+AGG - chr1_1:11701090-11701109 Msa0008090:intron 40.0%
AGGGAATTTGTGACTGTATG+AGG - chr1_1:11701148-11701167 Msa0008090:intron 40.0%
ATTGCTGTAAATGGCTGGAA+CGG + chr1_1:11701299-11701318 None:intergenic 40.0%
TTCTGCAAATTCTGGGTTTC+GGG + chr1_1:11701397-11701416 None:intergenic 40.0%
GTTCTGCAAATTCTGGGTTT+CGG + chr1_1:11701398-11701417 None:intergenic 40.0%
CTACTCGTTCTGCAAATTCT+GGG + chr1_1:11701404-11701423 None:intergenic 40.0%
TCTACTCGTTCTGCAAATTC+TGG + chr1_1:11701405-11701424 None:intergenic 40.0%
CAGAACGAGTAGAATCGTAA+TGG - chr1_1:11701412-11701431 Msa0008090:intron 40.0%
GGAATCGTTGTGTTATGTGT+TGG + chr1_1:11701449-11701468 None:intergenic 40.0%
ACCAACTTGGCAGTCAAAAT+CGG + chr1_1:11701570-11701589 None:intergenic 40.0%
!! GTAGGCATTTATTTTCCCAC+TGG + chr1_1:11701639-11701658 None:intergenic 40.0%
! AATCGGAAGGAAAAGTTGGT+AGG + chr1_1:11701657-11701676 None:intergenic 40.0%
AAGGAATCGGAAGGAAAAGT+TGG + chr1_1:11701661-11701680 None:intergenic 40.0%
AAGGGCAAGAAGTAACATTC+TGG + chr1_1:11702064-11702083 None:intergenic 40.0%
TAGGAAGATGTCAAATGAGG+AGG + chr1_1:11702132-11702151 None:intergenic 40.0%
GACAAGAGCTTGGAGATATT+AGG - chr1_1:11702285-11702304 Msa0008090:intron 40.0%
CCAAGAGAGTAGTATTTGCA+TGG + chr1_1:11702350-11702369 None:intergenic 40.0%
CCATGCAAATACTACTCTCT+TGG - chr1_1:11702347-11702366 Msa0008090:intron 40.0%
ATTTCCTCGTTGCACATTTG+AGG - chr1_1:11702483-11702502 Msa0008090:intron 40.0%
TTTCCTCGTTGCACATTTGA+GGG - chr1_1:11702484-11702503 Msa0008090:intron 40.0%
ACATTTGAGGGACGATCATA+AGG - chr1_1:11702496-11702515 Msa0008090:intron 40.0%
GTGAAGTAGAGAATGCTACT+TGG - chr1_1:11702573-11702592 Msa0008090:intron 40.0%
AACGGCACATATTTGACAGA+GGG + chr1_1:11702651-11702670 None:intergenic 40.0%
TAACGGCACATATTTGACAG+AGG + chr1_1:11702652-11702671 None:intergenic 40.0%
CACAATCACCAGATCAAGAT+TGG - chr1_1:11702703-11702722 Msa0008090:intron 40.0%
ATCACCAGATCAAGATTGGA+CGG - chr1_1:11702707-11702726 Msa0008090:intron 40.0%
AATGGCTCGTGTTTCAACTT+TGG + chr1_1:11702767-11702786 None:intergenic 40.0%
! CAAAGTGAAGGCAGAAGTAT+TGG + chr1_1:11702968-11702987 None:intergenic 40.0%
ATGGCATTCCTTCGTTTCAT+GGG - chr1_1:11703020-11703039 Msa0008090:exon 40.0%
TGGAAGAAAACTCATTTGGG+AGG - chr1_1:11703094-11703113 Msa0008090:five_prime_UTR 40.0%
GGAAGAAAACTCATTTGGGA+GGG - chr1_1:11703095-11703114 Msa0008090:five_prime_UTR 40.0%
ATCACCACCGGAGAAAAATA+GGG + chr1_1:11703198-11703217 None:intergenic 40.0%
TATCACCACCGGAGAAAAAT+AGG + chr1_1:11703199-11703218 None:intergenic 40.0%
! TATTTTTCTCCGGTGGTGAT+AGG - chr1_1:11703198-11703217 Msa0008090:five_prime_UTR 40.0%
AACAACAGAATCCAGATGGT+GGG - chr1_1:11703261-11703280 Msa0008090:five_prime_UTR 40.0%
ACACATCAGCTGCAAAGATT+TGG + chr1_1:11703296-11703315 None:intergenic 40.0%
AGAGTAAGACACCAAGATGA+TGG - chr1_1:11703383-11703402 Msa0008090:five_prime_UTR 40.0%
GAGAAAGGAACAAGAACCGT+TGG + chr1_1:11698733-11698752 None:intergenic 45.0%
TCCAAACCACTCGGTCAAAA+AGG + chr1_1:11700379-11700398 None:intergenic 45.0%
GAAGCTGAGTTTCACACGTT+TGG - chr1_1:11700433-11700452 Msa0008090:intron 45.0%
CTGAGTTTCACACGTTTGGT+TGG - chr1_1:11700437-11700456 Msa0008090:intron 45.0%
! TTTCACACGTTTGGTTGGTC+TGG - chr1_1:11700442-11700461 Msa0008090:intron 45.0%
!! TTCACACGTTTGGTTGGTCT+GGG - chr1_1:11700443-11700462 Msa0008090:intron 45.0%
CTCAAAAAGATCTTGCGCGA+GGG - chr1_1:11700478-11700497 Msa0008090:intron 45.0%
TGAAACTTGCCACTCAACAG+CGG + chr1_1:11700614-11700633 None:intergenic 45.0%
GCGCAAATGTCTGAAAATCG+TGG + chr1_1:11700723-11700742 None:intergenic 45.0%
GACGCACCAAGATATTTCTC+AGG + chr1_1:11700753-11700772 None:intergenic 45.0%
! GAGAAATATCTTGGTGCGTC+TGG - chr1_1:11700753-11700772 Msa0008090:intron 45.0%
! ATTGAGCTTGTTTCCGCTTC+TGG - chr1_1:11700780-11700799 Msa0008090:intron 45.0%
!! TACCTTTTGATGGGTGTTCG+AGG - chr1_1:11700834-11700853 Msa0008090:intron 45.0%
CTCCCTATTACCGTGTTTAG+TGG - chr1_1:11701005-11701024 Msa0008090:intron 45.0%
TCTGCAGATTCTAGGTTTCC+CGG - chr1_1:11701098-11701117 Msa0008090:intron 45.0%
!! TCGTAATTTGCTAGCAGCAG+TGG + chr1_1:11701470-11701489 None:intergenic 45.0%
! ATTCTGCTTGGCACTGAACA+CGG - chr1_1:11701496-11701515 Msa0008090:intron 45.0%
CCAACTTGGCAGTCAAAATC+GGG + chr1_1:11701569-11701588 None:intergenic 45.0%
TAGGAAGAGAGAGACCAACT+TGG + chr1_1:11701583-11701602 None:intergenic 45.0%
CTTCCTAGAACTCAAGAGCT+TGG - chr1_1:11701596-11701615 Msa0008090:intron 45.0%
AGACCAAGCTCTTGAGTTCT+AGG + chr1_1:11701602-11701621 None:intergenic 45.0%
AAGGGAGTAATGTATGTGGC+AGG - chr1_1:11701900-11701919 Msa0008090:intron 45.0%
AGGGAGTAATGTATGTGGCA+GGG - chr1_1:11701901-11701920 Msa0008090:intron 45.0%
GTAATGTATGTGGCAGGGAA+TGG - chr1_1:11701906-11701925 Msa0008090:intron 45.0%
! ATCTTTTAGCGATGGGGTTC+TGG - chr1_1:11702030-11702049 Msa0008090:intron 45.0%
AACACAATGTGTGACCGTTG+TGG + chr1_1:11702223-11702242 None:intergenic 45.0%
!!! GTGCACCCTTGTTTTACATG+TGG + chr1_1:11702246-11702265 None:intergenic 45.0%
ATCTCCAAGCTCTTGTCTAC+AGG + chr1_1:11702282-11702301 None:intergenic 45.0%
GCTTGGAGATATTAGGTGTC+TGG - chr1_1:11702292-11702311 Msa0008090:intron 45.0%
AGATATTAGGTGTCTGGCAC+TGG - chr1_1:11702298-11702317 Msa0008090:intron 45.0%
!! TGCTTCAGCTTGCTGTAGTA+TGG + chr1_1:11702389-11702408 None:intergenic 45.0%
CCAGCATAAGGACAAGTGTA+TGG + chr1_1:11702434-11702453 None:intergenic 45.0%
CCATACACTTGTCCTTATGC+TGG - chr1_1:11702431-11702450 Msa0008090:intron 45.0%
TTTGAGGGACGATCATAAGG+TGG - chr1_1:11702499-11702518 Msa0008090:intron 45.0%
GTAGCATTCTCTACTTCACG+CGG + chr1_1:11702572-11702591 None:intergenic 45.0%
TTAGCCGTCCAATCTTGATC+TGG + chr1_1:11702714-11702733 None:intergenic 45.0%
ACTCGTCAGCTCGTTATTCA+CGG + chr1_1:11702821-11702840 None:intergenic 45.0%
GCTGGAAAGCTTCAAAGTGA+AGG + chr1_1:11702980-11702999 None:intergenic 45.0%
!! CACTTTGAAGCTTTCCAGCT+AGG - chr1_1:11702981-11703000 Msa0008090:CDS 45.0%
CGAAGGAATGCCATGTAAAC+TGG + chr1_1:11703014-11703033 None:intergenic 45.0%
CATGGCATTCCTTCGTTTCA+TGG - chr1_1:11703019-11703038 Msa0008090:exon 45.0%
! GACTATCTCGAACTTTTCGG+TGG + chr1_1:11703145-11703164 None:intergenic 45.0%
GAACAACAGAATCCAGATGG+TGG - chr1_1:11703260-11703279 Msa0008090:five_prime_UTR 45.0%
ACAACAGAATCCAGATGGTG+GGG - chr1_1:11703262-11703281 Msa0008090:five_prime_UTR 45.0%
!! ATTAGTATTATTATATTATT+AGG + chr1_1:11701719-11701738 None:intergenic 5.0%
!!! AAGTTTTTTATTTTTTATTA+AGG - chr1_1:11701881-11701900 Msa0008090:intron 5.0%
!!! AGTTTTTTATTTTTTATTAA+GGG - chr1_1:11701882-11701901 Msa0008090:intron 5.0%
ACTTCGGACATATAGGCTGC+AGG - chr1_1:11700019-11700038 Msa0008090:intron 50.0%
CTTCGGACATATAGGCTGCA+GGG - chr1_1:11700020-11700039 Msa0008090:intron 50.0%
! GCCTTTTTGACCGAGTGGTT+TGG - chr1_1:11700375-11700394 Msa0008090:intron 50.0%
GGATTGCACTCCAAACCACT+CGG + chr1_1:11700388-11700407 None:intergenic 50.0%
!! TCACACGTTTGGTTGGTCTG+GGG - chr1_1:11700444-11700463 Msa0008090:intron 50.0%
! CCTCGCGCAAGATCTTTTTG+AGG + chr1_1:11700480-11700499 None:intergenic 50.0%
CCTCAAAAAGATCTTGCGCG+AGG - chr1_1:11700477-11700496 Msa0008090:intron 50.0%
GCTGTTGAGTGGCAAGTTTC+AGG - chr1_1:11700613-11700632 Msa0008090:intron 50.0%
TTTCAGGCCAACAACCACAC+CGG - chr1_1:11700629-11700648 Msa0008090:intron 50.0%
GGTTTAGGCTGATCTGTGAG+TGG + chr1_1:11700663-11700682 None:intergenic 50.0%
CTGAAAATCGTGGAGCGTGT+GGG + chr1_1:11700713-11700732 None:intergenic 50.0%
TCTGAAAATCGTGGAGCGTG+TGG + chr1_1:11700714-11700733 None:intergenic 50.0%
CCATCAAAAGGTAGACCCAC+GGG + chr1_1:11700827-11700846 None:intergenic 50.0%
CCCATCAAAAGGTAGACCCA+CGG + chr1_1:11700828-11700847 None:intergenic 50.0%
! CCGTGGGTCTACCTTTTGAT+GGG - chr1_1:11700825-11700844 Msa0008090:intron 50.0%
GTCCTCGAACACCCATCAAA+AGG + chr1_1:11700839-11700858 None:intergenic 50.0%
!! CGTAATTTGCTAGCAGACGG+TGG - chr1_1:11701038-11701057 Msa0008090:intron 50.0%
CTGCAGATTCTAGGTTTCCC+GGG - chr1_1:11701099-11701118 Msa0008090:intron 50.0%
AGATTCTAGGTTTCCCGGGT+CGG - chr1_1:11701103-11701122 Msa0008090:intron 50.0%
! CAAATTCTGGGTTTCGGGTC+GGG + chr1_1:11701392-11701411 None:intergenic 50.0%
! GCAAATTCTGGGTTTCGGGT+CGG + chr1_1:11701393-11701412 None:intergenic 50.0%
! TTGGCACTGAACACGGTGAT+AGG - chr1_1:11701503-11701522 Msa0008090:intron 50.0%
! TGGCACTGAACACGGTGATA+GGG - chr1_1:11701504-11701523 Msa0008090:intron 50.0%
!!! CCCGATTTTGACTGCCAAGT+TGG - chr1_1:11701566-11701585 Msa0008090:intron 50.0%
CTATTGGTGTGCTCAACCAG+AGG + chr1_1:11701830-11701849 None:intergenic 50.0%
GCTTTCTTGCAGTGCCACAA+CGG - chr1_1:11702206-11702225 Msa0008090:intron 50.0%
CCAAGCTCTTGTCTACAGGT+CGG + chr1_1:11702278-11702297 None:intergenic 50.0%
! TAGGTGTCTGGCACTGGAAA+AGG - chr1_1:11702304-11702323 Msa0008090:intron 50.0%
GAGCACTCTGATCCAGCATA+AGG + chr1_1:11702446-11702465 None:intergenic 50.0%
CATAAGGTGGACATGCACAC+AGG - chr1_1:11702512-11702531 Msa0008090:intron 50.0%
TGAAGCTTTCCAGCTAGGCA+TGG - chr1_1:11702986-11703005 Msa0008090:CDS 50.0%
AGGCATGGCTCCAGTTTACA+TGG - chr1_1:11703001-11703020 Msa0008090:CDS 50.0%
TCTCGTCTCCCATGAAACGA+AGG + chr1_1:11703031-11703050 None:intergenic 50.0%
TTTCATGGGAGACGAGAACG+AGG - chr1_1:11703034-11703053 Msa0008090:five_prime_UTR 50.0%
GAACTATACCTACAGCCTCG+AGG - chr1_1:11703061-11703080 Msa0008090:five_prime_UTR 50.0%
TATACCTACAGCCTCGAGGT+TGG - chr1_1:11703065-11703084 Msa0008090:five_prime_UTR 50.0%
ATACCTACAGCCTCGAGGTT+GGG - chr1_1:11703066-11703085 Msa0008090:five_prime_UTR 50.0%
! TCATTTGGGAGGGTACACCA+CGG - chr1_1:11703105-11703124 Msa0008090:five_prime_UTR 50.0%
! GAACTTTTCGGTGGCTATCG+CGG + chr1_1:11703136-11703155 None:intergenic 50.0%
!! ATGGCCCTATTTTTCTCCGG+TGG - chr1_1:11703191-11703210 Msa0008090:five_prime_UTR 50.0%
TTTCTCCGGTGGTGATAGGA+AGG - chr1_1:11703202-11703221 Msa0008090:five_prime_UTR 50.0%
CAGTTCCTTCCTATCACCAC+CGG + chr1_1:11703210-11703229 None:intergenic 50.0%
GGTATACAAACCCCACCATC+TGG + chr1_1:11703275-11703294 None:intergenic 50.0%
CACTGTCTTCCGCTGTTGAG+TGG - chr1_1:11700602-11700621 Msa0008090:intron 55.0%
ATACCCTCCGGTGTGGTTGT+TGG + chr1_1:11700639-11700658 None:intergenic 55.0%
TCTGTGAGTGGCATACCCTC+CGG + chr1_1:11700651-11700670 None:intergenic 55.0%
! GTAGACCCACGGGCTAAAAG+TGG + chr1_1:11700817-11700836 None:intergenic 55.0%
! CCCGTGGGTCTACCTTTTGA+TGG - chr1_1:11700824-11700843 Msa0008090:intron 55.0%
GATTCTAGGTTTCCCGGGTC+GGG - chr1_1:11701104-11701123 Msa0008090:intron 55.0%
!! GCGATGGGGTTCTGGTTCAT+AGG - chr1_1:11702038-11702057 Msa0008090:intron 55.0%
CCGACCTGTAGACAAGAGCT+TGG - chr1_1:11702275-11702294 Msa0008090:intron 55.0%
! GGATCAGAGTGCTCTGCTGT+TGG - chr1_1:11702452-11702471 Msa0008090:intron 55.0%
CGTCCCTCAAATGTGCAACG+AGG + chr1_1:11702490-11702509 None:intergenic 55.0%
AAACTGGAGCCATGCCTAGC+TGG + chr1_1:11702998-11703017 None:intergenic 55.0%
TACCTACAGCCTCGAGGTTG+GGG - chr1_1:11703067-11703086 Msa0008090:five_prime_UTR 55.0%
TTCCATTTGCCCCAACCTCG+AGG + chr1_1:11703079-11703098 None:intergenic 55.0%
AGGCCAACAACCACACCGGA+GGG - chr1_1:11700633-11700652 Msa0008090:intron 60.0%
GACGGTGGAATCGTCGTGCT+AGG - chr1_1:11701053-11701072 Msa0008090:intron 60.0%
GGTGGAATCGTCGTGCTAGG+TGG - chr1_1:11701056-11701075 Msa0008090:intron 60.0%
GGAATCGTCGTGCTAGGTGG+TGG - chr1_1:11701059-11701078 Msa0008090:intron 60.0%
! TTGGGTTGTGTGACCCGACC+CGG + chr1_1:11701120-11701139 None:intergenic 60.0%
!! CGGGTCGGGACTGGTTTCAA+TGG + chr1_1:11701378-11701397 None:intergenic 60.0%
TGGGAGACGAGAACGAGGCT+CGG - chr1_1:11703039-11703058 Msa0008090:five_prime_UTR 60.0%
AGCCTCGAGGTTGGGGCAAA+TGG - chr1_1:11703074-11703093 Msa0008090:five_prime_UTR 60.0%
TGGCTATCGCGGATACTCCG+TGG + chr1_1:11703125-11703144 None:intergenic 60.0%
CAGGCCAACAACCACACCGG+AGG - chr1_1:11700632-11700651 Msa0008090:intron 65.0%
GAGTGGCATACCCTCCGGTG+TGG + chr1_1:11700646-11700665 None:intergenic 65.0%
TGGGTTGTGTGACCCGACCC+GGG + chr1_1:11701119-11701138 None:intergenic 65.0%
! TCTGGGTTTCGGGTCGGGAC+TGG + chr1_1:11701387-11701406 None:intergenic 65.0%
TGCCCCAACCTCGAGGCTGT+AGG + chr1_1:11703072-11703091 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 11698638 11703505 11698638 ID=Msa0008090;Name=Msa0008090
chr1_1 mRNA 11698638 11703505 11698638 ID=Msa0008090-mRNA-1;Parent=Msa0008090;Name=Msa0008090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=484|1|1|1|1|1|3|195|333
chr1_1 exon 11698638 11699195 11698638 ID=Msa0008090-mRNA-1:exon:4343;Parent=Msa0008090-mRNA-1
chr1_1 exon 11699539 11699925 11699539 ID=Msa0008090-mRNA-1:exon:4342;Parent=Msa0008090-mRNA-1
chr1_1 exon 11702770 11703505 11702770 ID=Msa0008090-mRNA-1:exon:4341;Parent=Msa0008090-mRNA-1
chr1_1 five_prime_UTR 11703022 11703505 11703022 ID=Msa0008090-mRNA-1:five_prime_utr;Parent=Msa0008090-mRNA-1
chr1_1 CDS 11702770 11703021 11702770 ID=Msa0008090-mRNA-1:cds;Parent=Msa0008090-mRNA-1
chr1_1 CDS 11699539 11699925 11699539 ID=Msa0008090-mRNA-1:cds;Parent=Msa0008090-mRNA-1
chr1_1 CDS 11698833 11699195 11698833 ID=Msa0008090-mRNA-1:cds;Parent=Msa0008090-mRNA-1
chr1_1 three_prime_UTR 11698638 11698832 11698638 ID=Msa0008090-mRNA-1:three_prime_utr;Parent=Msa0008090-mRNA-1
Gene Sequence

>Msa0008090

ATGGATTTGGATAGTATTGAGTGTGTTTCTTCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACATCATCAACAACATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACAATAATCATGGTGTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACCTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTTGCTGAATCACTCGAGTTACCATGCAAATACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTAATTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTACAGCCTCGAGGTTGGGGCAAATGGAAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGCGATAGCCACCGAAAAGTTCGAGATAGTCATGACGGCCTCATAATTCAACGAAATATGGCCCTATTTTTCTCCGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTTTGTATACCAAATCTTTGCAGCTGA
Protein sequence

>Msa0008090

MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPRNGGNNNHGVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS*