AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365380 MtrunA17_Chr3g0124471 95.053 283 14 0 1 283 16 298 0.0 565
Msa0365380 MtrunA17_Chr3g0124481 87.279 283 36 0 1 283 1 283 0.0 499
Msa0365380 MtrunA17_Chr4g0054341 46.241 266 140 2 15 278 6 270 8.45e-84 253
Msa0365380 MtrunA17_Chr4g0028911 34.518 197 114 7 15 198 15 209 1.98e-21 91.3
Msa0365380 MtrunA17_Chr4g0028921 34.518 197 114 7 15 198 15 209 4.28e-21 90.1
Msa0365380 MtrunA17_Chr3g0122901 31.551 187 121 3 15 195 79 264 4.93e-19 85.5
Msa0365380 MtrunA17_Chr8g0386201 30.315 254 150 10 15 254 49 289 9.71e-19 84.7
Msa0365380 MtrunA17_Chr3g0123251 30.412 194 119 5 17 197 57 247 1.10e-17 81.6
Msa0365380 MtrunA17_Chr7g0267011 30.769 182 120 4 15 191 12 192 3.13e-17 78.2
Msa0365380 MtrunA17_Chr1g0171831 32.161 199 115 7 15 195 18 214 3.48e-17 79.3
Msa0365380 MtrunA17_Chr7g0249571 26.592 267 158 7 15 270 42 281 3.03e-16 77.4
Msa0365380 MtrunA17_Chr7g0272961 31.795 195 110 7 13 191 43 230 6.78e-16 76.3
Msa0365380 MtrunA17_Chr7g0268591 30.811 185 119 4 15 193 37 218 4.13e-15 73.9
Msa0365380 MtrunA17_Chr1g0191751 31.282 195 108 7 15 191 105 291 1.25e-14 73.2
Msa0365380 MtrunA17_Chr3g0123231 29.126 206 130 6 17 208 50 253 3.10e-14 71.6
Msa0365380 MtrunA17_Chr4g0026001 30.481 187 108 5 15 188 18 195 8.20e-14 70.1
Msa0365380 MtrunA17_Chr4g0025971 29.444 180 119 4 15 188 18 195 1.18e-13 69.3
Msa0365380 MtrunA17_Chr4g0044131 28.022 182 125 3 15 191 12 192 3.07e-13 68.2
Msa0365380 MtrunA17_Chr4g0025981 27.807 187 127 4 15 195 45 229 3.65e-13 68.6
Msa0365380 MtrunA17_Chr7g0270451 31.343 201 125 7 15 208 10 204 9.93e-13 66.6
Msa0365380 MtrunA17_Chr4g0033091 27.642 246 156 9 9 242 22 257 4.32e-12 64.7
Msa0365380 MtrunA17_Chr2g0287951 31.868 182 110 5 16 188 38 214 1.75e-11 63.5
Msa0365380 MtrunA17_Chr7g0239511 31.967 122 82 1 71 191 80 201 1.90e-11 63.2
Msa0365380 MtrunA17_Chr2g0324021 29.630 189 117 6 15 193 10 192 4.39e-11 62.0
Msa0365380 MtrunA17_Chr7g0239491 26.866 201 138 5 3 195 5 204 6.49e-11 61.6
Msa0365380 MtrunA17_Chr3g0123201 30.247 162 95 7 17 163 49 207 9.63e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365380 AT5G10050.1 64.338 272 97 0 11 282 5 276 1.18e-138 392
Msa0365380 AT5G65205.1 64.576 271 96 0 11 281 6 276 2.63e-136 386
Msa0365380 AT3G03330.1 27.239 268 161 7 15 270 45 290 2.69e-21 92.0
Msa0365380 AT5G50700.1 31.915 188 118 5 15 195 49 233 5.08e-21 91.7
Msa0365380 AT5G50600.1 31.915 188 118 5 15 195 49 233 5.08e-21 91.7
Msa0365380 AT3G47350.1 31.053 190 117 6 15 195 48 232 4.93e-19 85.5
Msa0365380 AT3G47350.2 31.053 190 117 6 15 195 48 232 1.26e-18 84.7
Msa0365380 AT1G10310.1 31.553 206 128 6 16 211 20 222 1.10e-17 80.5
Msa0365380 AT1G67730.1 30.208 192 118 5 17 195 55 243 2.53e-17 80.9
Msa0365380 AT2G17845.1 33.166 199 111 8 15 195 51 245 3.52e-17 80.5
Msa0365380 AT1G54870.1 32.353 204 117 6 5 191 73 272 5.90e-17 80.1
Msa0365380 AT1G54870.2 32.353 204 117 6 5 191 75 274 5.94e-17 80.1
Msa0365380 AT3G05260.1 30.542 203 121 5 5 191 28 226 2.33e-16 77.8
Msa0365380 AT3G55310.1 31.606 193 119 6 15 195 21 212 8.05e-16 76.3
Msa0365380 AT1G52340.1 29.767 215 136 6 15 217 22 233 1.03e-15 75.9
Msa0365380 AT5G50590.1 28.700 223 140 8 2 217 43 253 4.26e-15 74.3
Msa0365380 AT5G50690.1 28.700 223 140 8 2 217 43 253 4.26e-15 74.3
Msa0365380 AT4G03140.1 29.947 187 122 4 15 195 82 265 5.09e-15 74.7
Msa0365380 AT5G50590.2 30.049 203 125 7 2 197 43 235 7.07e-15 73.2
Msa0365380 AT5G50690.2 30.049 203 125 7 2 197 43 235 7.07e-15 73.2
Msa0365380 AT1G24360.1 32.620 187 119 4 15 195 78 263 2.21e-14 72.4
Msa0365380 AT3G29260.1 31.122 196 126 5 6 195 2 194 3.03e-13 68.6
Msa0365380 AT5G50770.1 30.851 188 120 5 15 195 49 233 3.88e-13 68.9
Msa0365380 AT3G03350.1 40.476 84 50 0 110 193 183 266 4.27e-13 68.6
Msa0365380 AT3G03350.2 39.773 88 53 0 109 196 268 355 5.78e-13 68.9
Msa0365380 AT3G29250.1 30.890 191 123 5 11 195 45 232 7.29e-13 67.8
Msa0365380 AT3G29250.3 30.890 191 123 5 11 195 43 230 7.82e-13 67.8
Msa0365380 AT3G29250.2 30.890 191 123 5 11 195 7 194 1.28e-12 66.6
Msa0365380 AT4G10020.1 27.099 262 160 11 6 254 44 287 7.39e-12 65.5
Msa0365380 AT1G24470.1 27.000 200 126 6 17 202 56 249 1.39e-11 64.3
Msa0365380 AT4G20760.1 26.587 252 151 11 15 238 45 290 2.32e-11 63.5
Msa0365380 AT2G47130.1 29.630 189 124 5 11 193 7 192 2.55e-11 63.2
Msa0365380 AT4G20760.2 26.587 252 151 11 15 238 65 310 2.83e-11 63.5
Msa0365380 AT3G46170.1 27.979 193 126 7 15 195 30 221 3.31e-11 63.2
Msa0365380 AT3G26760.1 23.881 201 128 6 5 191 31 220 9.32e-11 61.6

Find 157 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTGGAACTTGGAAATTT+TGG 0.076726 3_1:+59428256 Msa0365380:intron
AGATTAGAACTTGGACATTT+TGG 0.143636 3_1:+59431378 Msa0365380:intron
AGTTCTTGAAGAAAGAATTT+AGG 0.187004 3_1:-59425668 None:intergenic
ATGCAGGTGGTTTCTTTCTT+AGG 0.197151 3_1:-59431596 None:intergenic
ACGTTTGATACTAACGTATT+TGG 0.203077 3_1:+59425833 Msa0365380:five_prime_UTR
AATAATGTTCTAGATAAATT+TGG 0.248184 3_1:+59425728 Msa0365380:five_prime_UTR
CGTTAGTATCAAACGTGTTT+TGG 0.252956 3_1:-59425826 None:intergenic
CGTTAGTATCAAACGTGTTT+TGG 0.275941 3_1:-59430475 None:intergenic
TGCGTTAGCCTCTGGACCTT+GGG 0.276610 3_1:+59431092 Msa0365380:CDS
ATGCTTTGACAGATACATTA+AGG 0.281542 3_1:+59426558 Msa0365380:five_prime_UTR
GTTCTTGAAGAAAGAATTTA+GGG 0.282188 3_1:-59425667 None:intergenic
GATCTTCTCCATTGTGTATA+GGG 0.297309 3_1:-59425486 None:intergenic
TGGAGCTGTGAAGTCAAATA+TGG 0.307037 3_1:+59431425 Msa0365380:CDS
ACGTTCAACCATGGCGGATT+TGG 0.307727 3_1:+59425637 Msa0365380:five_prime_UTR
TGATCTTCTCCATTGTGTAT+AGG 0.311318 3_1:-59425487 None:intergenic
ACGTTCTACAATGGCGGATT+TGG 0.318601 3_1:+59430286 Msa0365380:CDS
ACGTTTGATACTAACGTCTT+TGG 0.327209 3_1:+59430482 Msa0365380:CDS
AAGTCAAATATTGGAAATTC+CGG 0.338697 3_1:+59428313 Msa0365380:five_prime_UTR
CCACCTGCATGGTTCTCTTA+TGG 0.348092 3_1:+59431609 Msa0365380:CDS
TCACATGGCAACTAGGAAAC+AGG 0.363828 3_1:+59426478 Msa0365380:five_prime_UTR
TCACATGGCAACTAGGAAAC+AGG 0.363828 3_1:+59431041 Msa0365380:CDS
GCAGTTCTTGAAGAAGCTTC+TGG 0.369512 3_1:-59429729 None:intergenic
CTCTGGCATGCGGTTGTAGA+TGG 0.375038 3_1:-59431463 None:intergenic
CTCCGGCATGCGGTTGTAGA+TGG 0.385536 3_1:-59428341 None:intergenic
TCTCGGATTGCTGCTTCAAA+TGG 0.389909 3_1:-59428379 None:intergenic
CTGCGTTAGCCTCTGGACCT+TGG 0.392453 3_1:+59431091 Msa0365380:CDS
AAGTCAAATATGGGAAATTC+CGG 0.392829 3_1:+59431435 Msa0365380:CDS
CCAGGATAGATTAGTATAGA+TGG 0.394046 3_1:-59429798 None:intergenic
GGAGCTGTGAAGTCAAATAT+TGG 0.400907 3_1:+59428304 Msa0365380:five_prime_UTR
CTCCATTGTGTAGATGTTGT+TGG 0.407234 3_1:-59430129 None:intergenic
GAAAGATTGTTAACAGTGCT+TGG 0.411279 3_1:+59426501 Msa0365380:five_prime_UTR
TAACGCTGGTGTTCCTTGTA+CGG 0.415470 3_1:+59430421 Msa0365380:CDS
AGTTCTTGAAGGAAGAATCT+AGG 0.420814 3_1:-59430317 None:intergenic
GGTTGCAGCGGAGGAGGTAT+AGG 0.425422 3_1:+59425554 Msa0365380:five_prime_UTR
ATATTTGACTTCACAGCTCC+AGG 0.429584 3_1:-59428301 None:intergenic
CGTTTAGCAAACTCGTCTGT+AGG 0.435097 3_1:-59428436 None:intergenic
GGTTGCAGTGGAGGAGGTAT+TGG 0.435778 3_1:+59430203 Msa0365380:CDS
ATTGCAGCTGTTGGCTGCGA+AGG 0.447096 3_1:-59430243 None:intergenic
ATATTTGACTTCACAGCTCC+AGG 0.451839 3_1:-59431423 None:intergenic
AGTGTTACTGCGTTAGCCTC+TGG 0.452738 3_1:+59431084 Msa0365380:CDS
TGTTTAGCAAACTCGTCTGT+AGG 0.453270 3_1:-59431558 None:intergenic
CCATGTGAGGAACCACAGCC+TGG 0.464735 3_1:-59431026 None:intergenic
GTTTAGCAAACTCGTCTGTA+GGG 0.465184 3_1:-59431557 None:intergenic
GCACCGTAGCTGCTGTCCTT+AGG 0.465314 3_1:+59428458 Msa0365380:five_prime_UTR
AACTCTGTTCACGCTTTCAT+CGG 0.468082 3_1:-59425702 None:intergenic
ACTGAACATTGAGTTCTTGA+AGG 0.470500 3_1:-59430328 None:intergenic
GTTTAGCAAACTCGTCTGTA+GGG 0.475638 3_1:-59428435 None:intergenic
AGGTTCCATGAGAATGATCC+AGG 0.481555 3_1:+59431008 Msa0365380:intron
TCAACAAACAGATTGGAACT+TGG 0.486654 3_1:+59428247 Msa0365380:intron
TGATCAAGAAGACTCAAAAC+TGG 0.489269 3_1:+59430166 Msa0365380:CDS
ATGCAGGTGGTTTCTTCCTA+AGG 0.489801 3_1:-59428474 None:intergenic
AAACCAGTGGTTCTCATCAC+AGG 0.491991 3_1:+59425533 Msa0365380:five_prime_UTR
TTCTTCAAGAACTGCCGTAC+GGG 0.494533 3_1:+59429737 Msa0365380:five_prime_UTR
AACTCTGCTCACGCTTTCAT+CGG 0.498955 3_1:-59430351 None:intergenic
GTTGTTTGTGAATGTAACAA+TGG 0.501868 3_1:-59425459 None:intergenic
ATCACAGGTTGCAGCGGAGG+AGG 0.503558 3_1:+59425548 Msa0365380:five_prime_UTR
AGGAACCATGAGAATGGTCC+AGG 0.505024 3_1:+59426445 Msa0365380:intron
CTCATCACAGGTTGCAGTGG+AGG 0.505784 3_1:+59430194 Msa0365380:CDS
TGCAACCACATTGCAGCTGT+TGG 0.505823 3_1:-59430252 None:intergenic
CCAGGCTGTGGTTCCTCACA+TGG 0.506294 3_1:+59431026 Msa0365380:CDS
TTTGCAGCTGTTAGCTGCGA+AGG 0.507590 3_1:-59425594 None:intergenic
CTTTCTTAGGATAGCAGCTA+CGG 0.512577 3_1:-59431583 None:intergenic
AAACTGGTGGTTCTCATCAC+AGG 0.512865 3_1:+59430182 Msa0365380:CDS
TAGTTCCTCACATGGCAACT+AGG 0.516282 3_1:+59426471 Msa0365380:five_prime_UTR
GCAAAGTGGTTGCAACCAGC+AGG 0.517343 3_1:+59425612 Msa0365380:five_prime_UTR
GATGTTCTTGTTAATAACGC+TGG 0.518173 3_1:+59430407 Msa0365380:CDS
CTTCCTAAGGACAGCAGCTA+CGG 0.519587 3_1:-59428461 None:intergenic
GCGGTTGTAGATGGCTATGC+CGG 0.519784 3_1:-59428332 None:intergenic
GCGGTTGTAGATGGCTATGC+CGG 0.519784 3_1:-59431454 None:intergenic
TTGTTTGTGAATGTAACAAT+GGG 0.519832 3_1:-59425458 None:intergenic
TGGTTCCTCACATGGCAACT+AGG 0.522562 3_1:+59431034 Msa0365380:CDS
GATGTTGTGAGTGTTGTCCC+TGG 0.523404 3_1:+59431405 Msa0365380:CDS
CATTCAAGTAGGCGATGACC+AGG 0.524954 3_1:-59429816 None:intergenic
CTAGCTATGGTACACTTGAA+TGG 0.525940 3_1:+59429760 Msa0365380:five_prime_UTR
ATCACAGGTTGCAGTGGAGG+AGG 0.526896 3_1:+59430197 Msa0365380:CDS
CTATGCTAGCTAGACTTGGC+TGG 0.527735 3_1:+59425412 Msa0365380:five_prime_UTR
CTCATCACAGGTTGCAGCGG+AGG 0.528829 3_1:+59425545 Msa0365380:five_prime_UTR
GTACACTTGAATGGTCGCTC+TGG 0.530162 3_1:+59429769 Msa0365380:five_prime_UTR
CAGGCTATGCTAGCTAGACT+TGG 0.531268 3_1:+59425408 None:intergenic
CCATCTATACTAATCTATCC+TGG 0.531321 3_1:+59429798 Msa0365380:five_prime_UTR
GCAATGTGGTTGCAACCAGC+AGG 0.532348 3_1:+59430261 Msa0365380:CDS
GGAGCTGTGAAGTCAAATAT+GGG 0.538147 3_1:+59431426 Msa0365380:CDS
TGGCGTGGAGTTGTTATCAA+TGG 0.539062 3_1:-59429709 None:intergenic
CCATGTGAGGAACTACAGCC+TGG 0.541278 3_1:-59426463 None:intergenic
ATGCTTTGACAGATACATTG+AGG 0.541960 3_1:+59431148 Msa0365380:CDS
AACGCTGGTGTTCCTTGTAC+GGG 0.542007 3_1:+59430422 Msa0365380:CDS
TGGCAATTATTCTACTGTCA+TGG 0.543525 3_1:+59431629 Msa0365380:CDS
CACAGCCTGGATCATTCTCA+TGG 0.550562 3_1:-59431013 None:intergenic
GTTCTCATCACAGGTTGCAG+TGG 0.550811 3_1:+59430191 Msa0365380:CDS
TTGTACGGGCCCACTTGCTG+AGG 0.553648 3_1:+59430436 Msa0365380:CDS
AACGCTGGTGTTCTTTGTGT+GGG 0.556188 3_1:+59425773 Msa0365380:five_prime_UTR
TCAGCAAGTGGGCCCGTACA+AGG 0.556211 3_1:-59430434 None:intergenic
CATGGTTGAACGTGACCTGC+TGG 0.557065 3_1:-59425627 None:intergenic
TCAACATACAGATTAGAACT+TGG 0.558737 3_1:+59431369 Msa0365380:intron
GATTTGAACAGTTTCCACTC+TGG 0.560594 3_1:-59431480 None:intergenic
TAACGCTGGTGTTCTTTGTG+TGG 0.562477 3_1:+59425772 Msa0365380:five_prime_UTR
CAACCTGTGATGAGAACCAC+TGG 0.563963 3_1:-59425536 None:intergenic
GAGAGAGGAACCTCAGCAAG+TGG 0.564453 3_1:-59430446 None:intergenic
CTTCTTCAAGAACTGCCGTA+CGG 0.564605 3_1:+59429736 Msa0365380:five_prime_UTR
CACTTGAATGGTCGCTCTGG+AGG 0.565243 3_1:+59429772 Msa0365380:five_prime_UTR
TGTTTCCTAGTTGCCATGTG+AGG 0.571163 3_1:-59426476 None:intergenic
TGTTTCCTAGTTGCCATGTG+AGG 0.571163 3_1:-59431039 None:intergenic
CATGAGAATGATCCAGGCTG+TGG 0.572883 3_1:+59431014 Msa0365380:CDS
GAGAGAGGAACTTCAGCAAG+TGG 0.573540 3_1:-59425797 None:intergenic
CATTGTAGAACGTGACCTGC+TGG 0.575467 3_1:-59430276 None:intergenic
TGAAAGCGTGAGCAGAGTTG+TGG 0.579399 3_1:+59430355 Msa0365380:CDS
TGGCCATACGAGAACCATGC+AGG 0.580164 3_1:-59428490 None:intergenic
CCAGGCTGTAGTTCCTCACA+TGG 0.580243 3_1:+59426463 Msa0365380:five_prime_UTR
GAGAAAATAGAGCTCTCTCT+CGG 0.580696 3_1:-59428396 None:intergenic
CGCAGCTAACAGCTGCAAAG+TGG 0.582001 3_1:+59425598 Msa0365380:five_prime_UTR
GAGAGAGAGCTCTACTGTCT+CGG 0.584024 3_1:+59431520 Msa0365380:CDS
CACATGGCAACTAGGAAACA+GGG 0.588117 3_1:+59426479 Msa0365380:five_prime_UTR
CACATGGCAACTAGGAAACA+GGG 0.588117 3_1:+59431042 Msa0365380:CDS
TTTAGCAAACTCGTCTGTAG+GGG 0.590181 3_1:-59431556 None:intergenic
GATGTTGTGAATGTTCTCCC+TGG 0.591417 3_1:+59428283 Msa0365380:five_prime_UTR
ATGTGCAGGAACCATGAGAA+TGG 0.591626 3_1:+59426439 Msa0365380:intron
CAGGGAAAGATTGTTAACGT+TGG 0.595293 3_1:+59431060 Msa0365380:CDS
TTAGCCTCTGGACCTTGGGG+CGG 0.599080 3_1:+59431096 Msa0365380:CDS
TCTTGAAGAAGCTTCTGGCG+TGG 0.599516 3_1:-59429724 None:intergenic
TTTAGCAAACTCGTCTGTAG+GGG 0.599552 3_1:-59428434 None:intergenic
TTGCCATAAGAGAACCATGC+AGG 0.601420 3_1:-59431612 None:intergenic
TATTTGACTTCACAGCTCCA+GGG 0.603014 3_1:-59428300 None:intergenic
ACTGCCGTACGGGCTAGCTA+TGG 0.607875 3_1:+59429747 Msa0365380:five_prime_UTR
GATGTTCTTGTAAATAACGC+TGG 0.609735 3_1:+59425758 Msa0365380:five_prime_UTR
TATTTGACTTCACAGCTCCA+GGG 0.611695 3_1:-59431422 None:intergenic
TAAGAAAGAAACCACCTGCA+TGG 0.614484 3_1:+59431598 Msa0365380:CDS
TACAGCCTGGACCATTCTCA+TGG 0.615109 3_1:-59426450 None:intergenic
ACAGTTTCCACTCTGGCATG+CGG 0.615919 3_1:-59431473 None:intergenic
GCGTTAGCCTCTGGACCTTG+GGG 0.617062 3_1:+59431093 Msa0365380:CDS
AGCCATCTACAACCGCATGC+CGG 0.618672 3_1:+59428339 Msa0365380:five_prime_UTR
GGTTTGAATAGTTTCCACTC+CGG 0.618933 3_1:-59428358 None:intergenic
ATAGTTTCCACTCCGGCATG+CGG 0.621048 3_1:-59428351 None:intergenic
GAGACAGTAGAGCTCTCTCT+CGG 0.621667 3_1:-59431518 None:intergenic
TGTACCATAGCTAGCCCGTA+CGG 0.623059 3_1:-59429751 None:intergenic
TTAGGAAGAAACCACCTGCA+TGG 0.623601 3_1:+59428476 Msa0365380:five_prime_UTR
TCAAGAAGATTCAAAACCAG+TGG 0.624130 3_1:+59425520 Msa0365380:five_prime_UTR
GTCTTGATCCAAATCCGCCA+TGG 0.629951 3_1:-59425645 None:intergenic
CAGCAGGTCACGTTCTACAA+TGG 0.634429 3_1:+59430277 Msa0365380:CDS
CAACAACACCCTATACACAA+TGG 0.636258 3_1:+59425478 Msa0365380:five_prime_UTR
GTTCTCATCACAGGTTGCAG+CGG 0.636969 3_1:+59425542 Msa0365380:five_prime_UTR
AGAGAGGAACTTCAGCAAGT+GGG 0.639603 3_1:-59425796 None:intergenic
GCACTATAAGTACCGCCCCA+AGG 0.642162 3_1:-59431108 None:intergenic
CGCAGCCAACAGCTGCAATG+TGG 0.642199 3_1:+59430247 Msa0365380:CDS
CAGGTCACGTTCTACAATGG+CGG 0.644489 3_1:+59430280 Msa0365380:CDS
TCTACAACCGCATGCCGGAG+TGG 0.644601 3_1:+59428344 Msa0365380:five_prime_UTR
ATTGTTAACAGTGCTTGGAA+TGG 0.647246 3_1:+59426506 Msa0365380:five_prime_UTR
AGAGAGGAACCTCAGCAAGT+GGG 0.648959 3_1:-59430445 None:intergenic
CAGCAGGTCACGTTCAACCA+TGG 0.654260 3_1:+59425628 Msa0365380:five_prime_UTR
TCAAGAAGACTCAAAACTGG+TGG 0.662392 3_1:+59430169 Msa0365380:CDS
AGTACCGCCCCAAGGTCCAG+AGG 0.667983 3_1:-59431100 None:intergenic
TACCAACAACATCTACACAA+TGG 0.669764 3_1:+59430127 Msa0365380:exon
CCATAAGAGAACCATGCAGG+TGG 0.674106 3_1:-59431609 None:intergenic
AGAAAGTCTCTAACACAGAG+AGG 0.683130 3_1:-59431669 None:intergenic
TCTACAACCGCATGCCAGAG+TGG 0.686871 3_1:+59431466 Msa0365380:CDS
CAGGTCACGTTCAACCATGG+CGG 0.709328 3_1:+59425631 Msa0365380:five_prime_UTR
CCATACGAGAACCATGCAGG+TGG 0.716141 3_1:-59428487 None:intergenic
AGAGAGCTCTACTGTCTCGG+AGG 0.716254 3_1:+59431523 Msa0365380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCTCAAAATTTAAT+CGG + chr3_1:59426148-59426167 Msa0365380:intron 10.0%
!!! TTATTTTAATTTTTGATATG+CGG + chr3_1:59431193-59431212 Msa0365380:intron 10.0%
!!! AATAATGTTCTAGATAAATT+TGG + chr3_1:59425728-59425747 Msa0365380:five_prime_UTR 15.0%
!! TATTTATCAATGTTGTTAAT+AGG + chr3_1:59426376-59426395 Msa0365380:intron 15.0%
!!! TTTCAAACTTGTTTTAATTT+TGG + chr3_1:59426593-59426612 Msa0365380:intron 15.0%
!! AAGTTAATTGAGTTTATTAA+CGG + chr3_1:59427629-59427648 Msa0365380:intron 15.0%
!! ACTATATTCATATTCATATT+AGG + chr3_1:59428082-59428101 Msa0365380:intron 15.0%
!!! TATTATTTTATTTTGTGCAT+TGG + chr3_1:59428785-59428804 Msa0365380:intron 15.0%
!!! TTTAAAATGAAATTAACAAG+TGG - chr3_1:59429295-59429314 None:intergenic 15.0%
!! AAATGATAAAAATTTGATGA+AGG - chr3_1:59429666-59429685 None:intergenic 15.0%
!! ATAATTCAAAGTAATAATGT+CGG - chr3_1:59430617-59430636 None:intergenic 15.0%
!! TATTTATCAATGTTGTTAAT+AGG + chr3_1:59426376-59426395 Msa0365380:intron 15.0%
!! ATTAAAATAAGTTTGAAGAT+AGG - chr3_1:59431183-59431202 None:intergenic 15.0%
!!! TTAATTCTAGTTTTGTTTGT+TGG + chr3_1:59425928-59425947 Msa0365380:intron 20.0%
!!! ATTGAAGTTTCTTTTGTTTT+GGG - chr3_1:59426272-59426291 None:intergenic 20.0%
!! AAGAACCAAAAAATACATTT+CGG - chr3_1:59426939-59426958 None:intergenic 20.0%
!! TCATGCAATTACATTAAAAA+AGG - chr3_1:59426988-59427007 None:intergenic 20.0%
!!! TTTTTTTATGCAGTATACTT+TGG - chr3_1:59427414-59427433 None:intergenic 20.0%
!! GCAACTACAAAATTAAATAA+TGG - chr3_1:59428179-59428198 None:intergenic 20.0%
!! ATAAAGGAAAAAAGTCAATT+TGG - chr3_1:59428205-59428224 None:intergenic 20.0%
!! GTACAAAGAATGATAAATTT+AGG - chr3_1:59428755-59428774 None:intergenic 20.0%
!!! TCAATTATTATTTCTTCAGT+AGG + chr3_1:59428819-59428838 Msa0365380:intron 20.0%
!! AAAAATATAGATCAAATGTG+AGG - chr3_1:59429347-59429366 None:intergenic 20.0%
!! TTAAGAAAGTAAAAACTAGA+AGG - chr3_1:59429371-59429390 None:intergenic 20.0%
!!! CATAATTGTTTTATGTACAA+AGG - chr3_1:59429860-59429879 None:intergenic 20.0%
!!! GATACTGTTTTGAATAAATT+TGG + chr3_1:59430377-59430396 Msa0365380:CDS 20.0%
!!! ATTGTTTTTTTATGTCTGTA+AGG + chr3_1:59430540-59430559 Msa0365380:intron 20.0%
!! TTCTCAACAAACAAAAATAT+TGG + chr3_1:59430643-59430662 Msa0365380:intron 20.0%
!!! TAGAATTTTTATGTTAGACT+TGG + chr3_1:59430716-59430735 Msa0365380:intron 20.0%
!!! TGTTAATAGGTTTTAGTTTT+TGG + chr3_1:59430902-59430921 Msa0365380:intron 20.0%
!! ACAACAATTATAAGCTATAA+AGG - chr3_1:59431344-59431363 None:intergenic 20.0%
!!! GTTTTAAACTTCTTCATTTG+TGG - chr3_1:59425439-59425458 None:intergenic 25.0%
! TTGTTTGTGAATGTAACAAT+GGG - chr3_1:59425461-59425480 None:intergenic 25.0%
! GTTCTTGAAGAAAGAATTTA+GGG - chr3_1:59425670-59425689 None:intergenic 25.0%
! AGTTCTTGAAGAAAGAATTT+AGG - chr3_1:59425671-59425690 None:intergenic 25.0%
!!! TTCTTTTGAAGAATGAGAAT+GGG + chr3_1:59426010-59426029 Msa0365380:intron 25.0%
! TGTATTCAGTTCATTTATGT+TGG + chr3_1:59426241-59426260 Msa0365380:intron 25.0%
!!! CATTGAAGTTTCTTTTGTTT+TGG - chr3_1:59426273-59426292 None:intergenic 25.0%
! TTTGAATCAAATGAACCATA+TGG + chr3_1:59426630-59426649 Msa0365380:intron 25.0%
! AGATTTCTATAACTTCCATA+TGG - chr3_1:59426648-59426667 None:intergenic 25.0%
!! TCGGTTCAAAATATTGTTTT+TGG - chr3_1:59426920-59426939 None:intergenic 25.0%
!!! TTGAACCGAAATGTATTTTT+TGG + chr3_1:59426931-59426950 Msa0365380:intron 25.0%
! TTGGAGTTCTTAATCTATAT+TGG + chr3_1:59427068-59427087 Msa0365380:intron 25.0%
! TGGAGTTCTTAATCTATATT+GGG + chr3_1:59427069-59427088 Msa0365380:intron 25.0%
!! TACCTGTTTTCATGTTTAAT+TGG + chr3_1:59427126-59427145 Msa0365380:intron 25.0%
! ATAGATTTCTACCTATTGAT+TGG + chr3_1:59427171-59427190 Msa0365380:intron 25.0%
!!! TTCTTTTTTAGCCAATCAAT+AGG - chr3_1:59427185-59427204 None:intergenic 25.0%
!! TTGGCTAAAAAAGAAGTATA+TGG + chr3_1:59427190-59427209 Msa0365380:intron 25.0%
!! TTTTCTTTTCTCTTCTTCAT+AGG - chr3_1:59427252-59427271 None:intergenic 25.0%
! TATGAAGAAGAGAAAAGAAA+AGG + chr3_1:59427251-59427270 Msa0365380:intron 25.0%
! ATGAAGAAGAGAAAAGAAAA+GGG + chr3_1:59427252-59427271 Msa0365380:intron 25.0%
! AATTGAGTTTATTAACGGTT+CGG + chr3_1:59427634-59427653 Msa0365380:intron 25.0%
! GTTAACCGTTATCAAAATAA+TGG + chr3_1:59427665-59427684 Msa0365380:intron 25.0%
!!! CCAATCCATTATTTTGATAA+CGG - chr3_1:59427673-59427692 None:intergenic 25.0%
! ATCAAATTAACACATTGATC+CGG - chr3_1:59427861-59427880 None:intergenic 25.0%
! TGAAATGAAATAGTTCATGA+TGG + chr3_1:59427965-59427984 Msa0365380:intron 25.0%
!!! TTCAAAAAAGTATCAGATTG+AGG + chr3_1:59428049-59428068 Msa0365380:intron 25.0%
! TATTAGGTATTACAGTACTA+AGG + chr3_1:59428098-59428117 Msa0365380:intron 25.0%
!!! GTTATTTTCAACAAACAGAT+TGG + chr3_1:59428240-59428259 Msa0365380:intron 25.0%
! AAGTCAAATATTGGAAATTC+CGG + chr3_1:59428313-59428332 Msa0365380:five_prime_UTR 25.0%
! ACTTTGATAGGAGATAATAT+CGG + chr3_1:59428649-59428668 Msa0365380:intron 25.0%
! CAAAGAATGATAAATTTAGG+AGG - chr3_1:59428752-59428771 None:intergenic 25.0%
! ATATTATCCAGTTTGTGAAT+TGG - chr3_1:59428895-59428914 None:intergenic 25.0%
!! AATATAACATGTACGGATTA+AGG + chr3_1:59428922-59428941 Msa0365380:intron 25.0%
! ACTAAAACATTAAGAACTAG+AGG - chr3_1:59429556-59429575 None:intergenic 25.0%
!! TTTTAACCATACATTCAAGT+AGG - chr3_1:59429830-59429849 None:intergenic 25.0%
!!! ATTGTTTTATGTACAAAGGA+TGG - chr3_1:59429856-59429875 None:intergenic 25.0%
! TTGTTAATGTTATGCATGAT+TGG + chr3_1:59429903-59429922 Msa0365380:intron 25.0%
!!! CAATAACATCTGGTTTTTAA+CGG + chr3_1:59430024-59430043 Msa0365380:intron 25.0%
!!! AATAACATCTGGTTTTTAAC+GGG + chr3_1:59430025-59430044 Msa0365380:intron 25.0%
! ATCAAATCAAATCAACAAGA+TGG + chr3_1:59431227-59431246 Msa0365380:intron 25.0%
! CAATTATAAGCTATAAAGGT+CGG - chr3_1:59431340-59431359 None:intergenic 25.0%
GTTGTTTGTGAATGTAACAA+TGG - chr3_1:59425462-59425481 None:intergenic 30.0%
ACGTTTGATACTAACGTATT+TGG + chr3_1:59425833-59425852 Msa0365380:five_prime_UTR 30.0%
TTGATACTAACGTATTTGGT+TGG + chr3_1:59425837-59425856 Msa0365380:intron 30.0%
! TTGTTTGTTGGATTGATGTT+TGG + chr3_1:59425940-59425959 Msa0365380:intron 30.0%
!! GTTCTTTTGAAGAATGAGAA+TGG + chr3_1:59426009-59426028 Msa0365380:intron 30.0%
TCAGTTCATTTATGTTGGTA+TGG + chr3_1:59426246-59426265 Msa0365380:intron 30.0%
TTACTAGTACCAAGTACAAT+TGG + chr3_1:59426334-59426353 Msa0365380:intron 30.0%
TACTAGTACCAAGTACAATT+GGG + chr3_1:59426335-59426354 Msa0365380:intron 30.0%
ATGCTTTGACAGATACATTA+AGG + chr3_1:59426558-59426577 Msa0365380:five_prime_UTR 30.0%
!! TAGAGATTTTTGCTTTGTTG+TGG + chr3_1:59426679-59426698 Msa0365380:intron 30.0%
CATGTCAATAGAAATCACTA+GGG + chr3_1:59426748-59426767 Msa0365380:intron 30.0%
ATGTCAATAGAAATCACTAG+GGG + chr3_1:59426749-59426768 Msa0365380:intron 30.0%
ACTATTTCAACAATTCGGTT+CGG - chr3_1:59426802-59426821 None:intergenic 30.0%
ACCGAATTGTTGAAATAGTT+TGG + chr3_1:59426803-59426822 Msa0365380:intron 30.0%
CCCAAACTATTTCAACAATT+CGG - chr3_1:59426807-59426826 None:intergenic 30.0%
CCGAATTGTTGAAATAGTTT+GGG + chr3_1:59426804-59426823 Msa0365380:intron 30.0%
TCAGTTCGTAGGTAATAAAA+TGG - chr3_1:59426896-59426915 None:intergenic 30.0%
GTTGTTTACAAATGTTGTGA+TGG + chr3_1:59427033-59427052 Msa0365380:intron 30.0%
! AAATGTTGTGATGGAATTTG+AGG + chr3_1:59427042-59427061 Msa0365380:intron 30.0%
ATCTATATTGGGCACAATAT+AGG + chr3_1:59427080-59427099 Msa0365380:intron 30.0%
GTCCAATTAAACATGAAAAC+AGG - chr3_1:59427131-59427150 None:intergenic 30.0%
!!! TACTTTTTCTCTTTCAGACT+TGG + chr3_1:59427336-59427355 Msa0365380:intron 30.0%
!! ACTTTTTCTCTTTCAGACTT+GGG + chr3_1:59427337-59427356 Msa0365380:intron 30.0%
! ACACACGTTATGTTCATTTT+AGG - chr3_1:59427567-59427586 None:intergenic 30.0%
TAGAAACATGGTTAATGGTT+CGG + chr3_1:59427599-59427618 Msa0365380:intron 30.0%
!! CCGTTATCAAAATAATGGAT+TGG + chr3_1:59427670-59427689 Msa0365380:intron 30.0%
!! TAATGGATTGGTTCAAGAAT+TGG + chr3_1:59427682-59427701 Msa0365380:intron 30.0%
!!! TGAAATGGTTCGGTTAATTT+TGG + chr3_1:59427705-59427724 Msa0365380:intron 30.0%
ACTTAAACCAGTGATTTCTA+GGG - chr3_1:59427767-59427786 None:intergenic 30.0%
AACTTAAACCAGTGATTTCT+AGG - chr3_1:59427768-59427787 None:intergenic 30.0%
! TTGATGAAAGTGTAATCTAG+CGG + chr3_1:59427876-59427895 Msa0365380:intron 30.0%
!! TACTCATAAAGTACTGTGTA+GGG - chr3_1:59427913-59427932 None:intergenic 30.0%
!! TTACTCATAAAGTACTGTGT+AGG - chr3_1:59427914-59427933 None:intergenic 30.0%
!!! TGTTTTTTGCAATGTTCACT+TGG - chr3_1:59427940-59427959 None:intergenic 30.0%
CAACAACATGTAAGACATAA+AGG - chr3_1:59428221-59428240 None:intergenic 30.0%
! AGATTGGAACTTGGAAATTT+TGG + chr3_1:59428256-59428275 Msa0365380:intron 30.0%
AAATTGTACTCCACTTTGAT+AGG + chr3_1:59428637-59428656 Msa0365380:intron 30.0%
GATATTATCTCCTATCAAAG+TGG - chr3_1:59428650-59428669 None:intergenic 30.0%
CTTTGATAGGAGATAATATC+GGG + chr3_1:59428650-59428669 Msa0365380:intron 30.0%
TTTGATAGGAGATAATATCG+GGG + chr3_1:59428651-59428670 Msa0365380:intron 30.0%
CACAAACTGGATAATATTGA+TGG + chr3_1:59428898-59428917 Msa0365380:intron 30.0%
TGATGGCAATATAACATGTA+CGG + chr3_1:59428915-59428934 Msa0365380:intron 30.0%
!!! TCCTAGATTTTAACTGTGTT+TGG - chr3_1:59429016-59429035 None:intergenic 30.0%
TATAACGTGGAGAAAAACAT+AGG + chr3_1:59429081-59429100 Msa0365380:intron 30.0%
TATAACGTGGAGAAAAACAT+AGG + chr3_1:59429081-59429100 Msa0365380:intron 30.0%
! AAGCATGGTACAATCTTTTT+AGG + chr3_1:59429218-59429237 Msa0365380:intron 30.0%
AAGTCCTATTAGATTCAATC+TGG - chr3_1:59429245-59429264 None:intergenic 30.0%
GATTGAATCTAATAGGACTT+AGG + chr3_1:59429245-59429264 Msa0365380:intron 30.0%
AGAAATAATAAGCGTGACAA+AGG - chr3_1:59429631-59429650 None:intergenic 30.0%
TATCAATGGTGAATCTAGTT+GGG - chr3_1:59429698-59429717 None:intergenic 30.0%
TTATCAATGGTGAATCTAGT+TGG - chr3_1:59429699-59429718 None:intergenic 30.0%
ATAGGAATAATGACTTGACT+AGG - chr3_1:59429947-59429966 None:intergenic 30.0%
!! CCATGTAATCGCATTTTAAT+AGG - chr3_1:59429965-59429984 None:intergenic 30.0%
CCTATTAAAATGCGATTACA+TGG + chr3_1:59429962-59429981 Msa0365380:intron 30.0%
CGTTAAAAACCAGATGTTAT+TGG - chr3_1:59430026-59430045 None:intergenic 30.0%
AAGCTTCTTCATATCATATG+TGG - chr3_1:59430089-59430108 None:intergenic 30.0%
!! TTGTTGGTAACTGTAACAAT+GGG - chr3_1:59430116-59430135 None:intergenic 30.0%
!!! TTTTTTTATGTCTGTAAGGC+AGG + chr3_1:59430544-59430563 Msa0365380:intron 30.0%
TCAGTGCATTTATGTTTGTA+TGG + chr3_1:59430752-59430771 Msa0365380:intron 30.0%
TCCAAAACAAAAGAACTTCA+AGG + chr3_1:59430775-59430794 Msa0365380:intron 30.0%
!! ACCTTGAAGTTCTTTTGTTT+TGG - chr3_1:59430779-59430798 None:intergenic 30.0%
!!! GGTTTTAGTTTTTGGTTTTG+TGG + chr3_1:59430910-59430929 Msa0365380:intron 30.0%
TCAACATACAGATTAGAACT+TGG + chr3_1:59431369-59431388 Msa0365380:intron 30.0%
! AGATTAGAACTTGGACATTT+TGG + chr3_1:59431378-59431397 Msa0365380:intron 30.0%
AAGTCAAATATGGGAAATTC+CGG + chr3_1:59431435-59431454 Msa0365380:CDS 30.0%
GATCTTCTCCATTGTGTATA+GGG - chr3_1:59425489-59425508 None:intergenic 35.0%
TGATCTTCTCCATTGTGTAT+AGG - chr3_1:59425490-59425509 None:intergenic 35.0%
TCAAGAAGATTCAAAACCAG+TGG + chr3_1:59425520-59425539 Msa0365380:five_prime_UTR 35.0%
GATGTTCTTGTAAATAACGC+TGG + chr3_1:59425758-59425777 Msa0365380:five_prime_UTR 35.0%
! CGTTAGTATCAAACGTGTTT+TGG - chr3_1:59425829-59425848 None:intergenic 35.0%
GAAGTTGAAAAGTAGTTGTC+TGG + chr3_1:59425966-59425985 Msa0365380:intron 35.0%
!!! AAAGTAGTTGTCTGGCTTTT+TGG + chr3_1:59425974-59425993 Msa0365380:intron 35.0%
! AATGGGTTTGATGCTCAAAA+AGG + chr3_1:59426027-59426046 Msa0365380:intron 35.0%
ATGGGTTTGATGCTCAAAAA+GGG + chr3_1:59426028-59426047 Msa0365380:intron 35.0%
TGTTTACACCCAATTGTACT+TGG - chr3_1:59426346-59426365 None:intergenic 35.0%
GTACAATTGGGTGTAAACAA+AGG + chr3_1:59426347-59426366 Msa0365380:intron 35.0%
GAAAGATTGTTAACAGTGCT+TGG + chr3_1:59426501-59426520 Msa0365380:five_prime_UTR 35.0%
ATTGTTAACAGTGCTTGGAA+TGG + chr3_1:59426506-59426525 Msa0365380:five_prime_UTR 35.0%
TGAAGGAAACCTTGGTTTAA+CGG + chr3_1:59426708-59426727 Msa0365380:intron 35.0%
CCTAGTGATTTCTATTGACA+TGG - chr3_1:59426750-59426769 None:intergenic 35.0%
CCATGTCAATAGAAATCACT+AGG + chr3_1:59426747-59426766 Msa0365380:intron 35.0%
! ACCATAAGTTTGGTTCAGTT+CGG - chr3_1:59426865-59426884 None:intergenic 35.0%
ACTGAACCAAACTTATGGTT+CGG + chr3_1:59426866-59426885 Msa0365380:intron 35.0%
!!! TTGTTTTTGGTTCAGTTCGT+AGG - chr3_1:59426907-59426926 None:intergenic 35.0%
! TCGAAGATTTTTGCAACACT+TGG + chr3_1:59427011-59427030 Msa0365380:intron 35.0%
TTAATTGGACTGTGCTTAGT+CGG + chr3_1:59427141-59427160 Msa0365380:intron 35.0%
AGTACATGTTTAGTCCAGTT+CGG - chr3_1:59427480-59427499 None:intergenic 35.0%
TATCAAACTGCCTAGAAACA+TGG + chr3_1:59427587-59427606 Msa0365380:intron 35.0%
GAACCATTAACCATGTTTCT+AGG - chr3_1:59427600-59427619 None:intergenic 35.0%
!! AGTTTATTAACGGTTCGGTT+CGG + chr3_1:59427639-59427658 Msa0365380:intron 35.0%
TGGTTCAAGAATTGGTGAAA+TGG + chr3_1:59427690-59427709 Msa0365380:intron 35.0%
CAAGAATTGGTGAAATGGTT+CGG + chr3_1:59427695-59427714 Msa0365380:intron 35.0%
!! CGGTTAATTTTGGTCCAATT+CGG + chr3_1:59427715-59427734 Msa0365380:intron 35.0%
!! AATTTTGGTCCAATTCGGTT+TGG + chr3_1:59427720-59427739 Msa0365380:intron 35.0%
! CTTAAACCAGTGATTTCTAG+GGG - chr3_1:59427766-59427785 None:intergenic 35.0%
!! CTTTTAGAGATAGTCTGATC+CGG + chr3_1:59427839-59427858 Msa0365380:intron 35.0%
GATGCAACAATACACCATTT+GGG + chr3_1:59428134-59428153 Msa0365380:intron 35.0%
! ACAATACACCATTTGGGATT+TGG + chr3_1:59428140-59428159 Msa0365380:intron 35.0%
TCAACAAACAGATTGGAACT+TGG + chr3_1:59428247-59428266 Msa0365380:intron 35.0%
CAATGAAGTTGCAACATCAT+GGG - chr3_1:59428728-59428747 None:intergenic 35.0%
ACAATGAAGTTGCAACATCA+TGG - chr3_1:59428729-59428748 None:intergenic 35.0%
TCTTTCAGAGACTTTGATGA+TGG + chr3_1:59428847-59428866 Msa0365380:intron 35.0%
! ATAACATGTACGGATTAAGG+AGG + chr3_1:59428925-59428944 Msa0365380:intron 35.0%
! TAACATGTACGGATTAAGGA+GGG + chr3_1:59428926-59428945 Msa0365380:intron 35.0%
! AGTTATGGTGATGAAAGTGA+AGG + chr3_1:59428982-59429001 Msa0365380:intron 35.0%
GCCAAACACAGTTAAAATCT+AGG + chr3_1:59429012-59429031 Msa0365380:intron 35.0%
CTAGGAAGCTTATCAAAAAG+AGG + chr3_1:59429030-59429049 Msa0365380:intron 35.0%
ACATAACGAGTTGTATAACG+TGG + chr3_1:59429120-59429139 Msa0365380:intron 35.0%
AGGTCCAGATTGAATCTAAT+AGG + chr3_1:59429238-59429257 Msa0365380:intron 35.0%
CCAGGATAGATTAGTATAGA+TGG - chr3_1:59429801-59429820 None:intergenic 35.0%
CCATCTATACTAATCTATCC+TGG + chr3_1:59429798-59429817 Msa0365380:five_prime_UTR 35.0%
!! GTTGTTGGTAACTGTAACAA+TGG - chr3_1:59430117-59430136 None:intergenic 35.0%
TACCAACAACATCTACACAA+TGG + chr3_1:59430127-59430146 Msa0365380:exon 35.0%
TGATCAAGAAGACTCAAAAC+TGG + chr3_1:59430166-59430185 Msa0365380:CDS 35.0%
AGTTCTTGAAGGAAGAATCT+AGG - chr3_1:59430320-59430339 None:intergenic 35.0%
ACTGAACATTGAGTTCTTGA+AGG - chr3_1:59430331-59430350 None:intergenic 35.0%
GATGTTCTTGTTAATAACGC+TGG + chr3_1:59430407-59430426 Msa0365380:CDS 35.0%
! CGTTAGTATCAAACGTGTTT+TGG - chr3_1:59425829-59425848 None:intergenic 35.0%
ACGTTTGATACTAACGTCTT+TGG + chr3_1:59430482-59430501 Msa0365380:CDS 35.0%
TTGATACTAACGTCTTTGGT+TGG + chr3_1:59430486-59430505 Msa0365380:intron 35.0%
TGTCTATATTCGTGCTTCAT+AGG + chr3_1:59430687-59430706 Msa0365380:intron 35.0%
GTCTATATTCGTGCTTCATA+GGG + chr3_1:59430688-59430707 Msa0365380:intron 35.0%
TGTTAGTAGTACACTAGTAC+CGG + chr3_1:59430838-59430857 Msa0365380:intron 35.0%
TTGTTTACACCCAATTGTAC+CGG - chr3_1:59426347-59426366 None:intergenic 35.0%
GTACAATTGGGTGTAAACAA+AGG + chr3_1:59426347-59426366 Msa0365380:intron 35.0%
ATGCTTTGACAGATACATTG+AGG + chr3_1:59431148-59431167 Msa0365380:CDS 35.0%
! ATACGCCATTTAGAATCTAG+TGG + chr3_1:59431299-59431318 Msa0365380:intron 35.0%
ATAAGCTATAAAGGTCGGAT+TGG - chr3_1:59431335-59431354 None:intergenic 35.0%
TGGCAATTATTCTACTGTCA+TGG + chr3_1:59431629-59431648 Msa0365380:CDS 35.0%
CAACAACACCCTATACACAA+TGG + chr3_1:59425478-59425497 Msa0365380:five_prime_UTR 40.0%
AACTCTGTTCACGCTTTCAT+CGG - chr3_1:59425705-59425724 None:intergenic 40.0%
TTCGAACACTGACACATGTT+GGG - chr3_1:59426105-59426124 None:intergenic 40.0%
AAGCACAAACACTCGGATAT+TGG - chr3_1:59426179-59426198 None:intergenic 40.0%
ATATCACTCCATACATGTGC+AGG + chr3_1:59426425-59426444 Msa0365380:intron 40.0%
ACTGTAACACCGTTAAACCA+AGG - chr3_1:59426720-59426739 None:intergenic 40.0%
TCAATAGAAATCACTAGGGG+TGG + chr3_1:59426752-59426771 Msa0365380:intron 40.0%
CAATAGAAATCACTAGGGGT+GGG + chr3_1:59426753-59426772 Msa0365380:intron 40.0%
! AAACCGAACCGTTTAAGGTT+TGG + chr3_1:59426828-59426847 Msa0365380:intron 40.0%
GTTCCAAACCTTAAACGGTT+CGG - chr3_1:59426834-59426853 None:intergenic 40.0%
GGTTCGTTCCAAACCTTAAA+CGG - chr3_1:59426839-59426858 None:intergenic 40.0%
! AAGTTTGGTTCAGTTCGGTT+CGG - chr3_1:59426860-59426879 None:intergenic 40.0%
ACCGAACTGAACCAAACTTA+TGG + chr3_1:59426861-59426880 Msa0365380:intron 40.0%
GGTTAACCGAACCATAAGTT+TGG - chr3_1:59426875-59426894 None:intergenic 40.0%
TTGTTATGCTTACACCGAAC+TGG + chr3_1:59427463-59427482 Msa0365380:intron 40.0%
CTGCCTAGAAACATGGTTAA+TGG + chr3_1:59427594-59427613 Msa0365380:intron 40.0%
AACCAAGAACCAAACCGAAT+TGG - chr3_1:59427732-59427751 None:intergenic 40.0%
AAGTGTAATCTAGCGGAGTT+TGG + chr3_1:59427883-59427902 Msa0365380:intron 40.0%
! ACAGTACTAAGGCCAAGTTT+TGG + chr3_1:59428109-59428128 Msa0365380:intron 40.0%
TTGTTGCATCCACCAAAACT+TGG - chr3_1:59428124-59428143 None:intergenic 40.0%
GGATGCAACAATACACCATT+TGG + chr3_1:59428133-59428152 Msa0365380:intron 40.0%
! ATACACCATTTGGGATTTGG+TGG + chr3_1:59428143-59428162 Msa0365380:intron 40.0%
! TATTTGACTTCACAGCTCCA+GGG - chr3_1:59428303-59428322 None:intergenic 40.0%
! ATATTTGACTTCACAGCTCC+AGG - chr3_1:59428304-59428323 None:intergenic 40.0%
GGAGCTGTGAAGTCAAATAT+TGG + chr3_1:59428304-59428323 Msa0365380:five_prime_UTR 40.0%
GGTTTGAATAGTTTCCACTC+CGG - chr3_1:59428361-59428380 None:intergenic 40.0%
GAGAAAATAGAGCTCTCTCT+CGG - chr3_1:59428399-59428418 None:intergenic 40.0%
! AGAGAGAGCTCTATTTTCTC+AGG + chr3_1:59428399-59428418 Msa0365380:five_prime_UTR 40.0%
! GAGAGAGCTCTATTTTCTCA+GGG + chr3_1:59428400-59428419 Msa0365380:five_prime_UTR 40.0%
! AGAGAGCTCTATTTTCTCAG+GGG + chr3_1:59428401-59428420 Msa0365380:five_prime_UTR 40.0%
TTTAGCAAACTCGTCTGTAG+GGG - chr3_1:59428437-59428456 None:intergenic 40.0%
GTTTAGCAAACTCGTCTGTA+GGG - chr3_1:59428438-59428457 None:intergenic 40.0%
TGGCCATTATTCTACTGTCA+TGG + chr3_1:59428507-59428526 Msa0365380:intron 40.0%
CAGCCATGACAGTAGAATAA+TGG - chr3_1:59428513-59428532 None:intergenic 40.0%
CTCTAACACAGAGAGGTAAA+TGG - chr3_1:59428543-59428562 None:intergenic 40.0%
AGAAAGTCTCTAACACAGAG+AGG - chr3_1:59428550-59428569 None:intergenic 40.0%
TCCATAAAGATAGACAGCAC+GGG - chr3_1:59428604-59428623 None:intergenic 40.0%
CTCCATAAAGATAGACAGCA+CGG - chr3_1:59428605-59428624 None:intergenic 40.0%
! ATATCGGGGAATGTCTTGTT+AGG + chr3_1:59428665-59428684 Msa0365380:intron 40.0%
! TATCGGGGAATGTCTTGTTA+GGG + chr3_1:59428666-59428685 Msa0365380:intron 40.0%
CAGTTTGTGAATTGGAAGAC+TGG - chr3_1:59428887-59428906 None:intergenic 40.0%
CAGTCTTCCAATTCACAAAC+TGG + chr3_1:59428885-59428904 Msa0365380:intron 40.0%
GCTGAGTACGTAATCAGTTA+TGG + chr3_1:59428967-59428986 Msa0365380:intron 40.0%
! GCTTATCAAAAAGAGGTGTG+TGG + chr3_1:59429037-59429056 Msa0365380:intron 40.0%
ACATAACGAGTCGTATAACG+TGG + chr3_1:59429068-59429087 Msa0365380:intron 40.0%
GTACCATGCTTGACGTTATT+CGG - chr3_1:59429209-59429228 None:intergenic 40.0%
TTCTCAACGTGATTACCTTG+AGG - chr3_1:59429473-59429492 None:intergenic 40.0%
CTAGCTATGGTACACTTGAA+TGG + chr3_1:59429760-59429779 Msa0365380:five_prime_UTR 40.0%
TCATCGCCTACTTGAATGTA+TGG + chr3_1:59429821-59429840 Msa0365380:intron 40.0%
! TGGTGACCATCACCTATTTT+CGG + chr3_1:59429982-59430001 Msa0365380:intron 40.0%
!! AGCTATGAAGCACCGAAAAT+AGG - chr3_1:59429997-59430016 None:intergenic 40.0%
!!! TATTTTCGGTGCTTCATAGC+TGG + chr3_1:59429996-59430015 Msa0365380:intron 40.0%
AGCAATGCAATGCTACACTT+TGG + chr3_1:59430058-59430077 Msa0365380:intron 40.0%
CTCCATTGTGTAGATGTTGT+TGG - chr3_1:59430132-59430151 None:intergenic 40.0%
TCAAGAAGACTCAAAACTGG+TGG + chr3_1:59430169-59430188 Msa0365380:CDS 40.0%
!! TAATAATGTCGGTGTCGTGA+GGG - chr3_1:59430606-59430625 None:intergenic 40.0%
!! TACACTAGTACCGGTACAAT+TGG + chr3_1:59430847-59430866 Msa0365380:intron 40.0%
!! ACACTAGTACCGGTACAATT+GGG + chr3_1:59430848-59430867 Msa0365380:intron 40.0%
CAGGGAAAGATTGTTAACGT+TGG + chr3_1:59431060-59431079 Msa0365380:CDS 40.0%
AACCAAAGCAACGAAACAAG+CGG - chr3_1:59431266-59431285 None:intergenic 40.0%
TCCAGCCACTAGATTCTAAA+TGG - chr3_1:59431307-59431326 None:intergenic 40.0%
! TATTTGACTTCACAGCTCCA+GGG - chr3_1:59428303-59428322 None:intergenic 40.0%
! ATATTTGACTTCACAGCTCC+AGG - chr3_1:59428304-59428323 None:intergenic 40.0%
TGGAGCTGTGAAGTCAAATA+TGG + chr3_1:59428303-59428322 Msa0365380:five_prime_UTR 40.0%
GGAGCTGTGAAGTCAAATAT+GGG + chr3_1:59428304-59428323 Msa0365380:five_prime_UTR 40.0%
GATTTGAACAGTTTCCACTC+TGG - chr3_1:59431483-59431502 None:intergenic 40.0%
TTTAGCAAACTCGTCTGTAG+GGG - chr3_1:59428437-59428456 None:intergenic 40.0%
GTTTAGCAAACTCGTCTGTA+GGG - chr3_1:59428438-59428457 None:intergenic 40.0%
TGTTTAGCAAACTCGTCTGT+AGG - chr3_1:59431561-59431580 None:intergenic 40.0%
CTTTCTTAGGATAGCAGCTA+CGG - chr3_1:59431586-59431605 None:intergenic 40.0%
ATGCAGGTGGTTTCTTTCTT+AGG - chr3_1:59431599-59431618 None:intergenic 40.0%
TAAGAAAGAAACCACCTGCA+TGG + chr3_1:59431598-59431617 Msa0365380:CDS 40.0%
AGAAAGTCTCTAACACAGAG+AGG - chr3_1:59428550-59428569 None:intergenic 40.0%
AAACCAGTGGTTCTCATCAC+AGG + chr3_1:59425533-59425552 Msa0365380:five_prime_UTR 45.0%
TAACGCTGGTGTTCTTTGTG+TGG + chr3_1:59425772-59425791 Msa0365380:five_prime_UTR 45.0%
AACGCTGGTGTTCTTTGTGT+GGG + chr3_1:59425773-59425792 Msa0365380:five_prime_UTR 45.0%
AGAGAGGAACTTCAGCAAGT+GGG - chr3_1:59425799-59425818 None:intergenic 45.0%
!! GTGTTTTGGATTGCAGAGAG+AGG - chr3_1:59425815-59425834 None:intergenic 45.0%
GCGCAGACAATTCTGTTTGA+AGG + chr3_1:59426067-59426086 Msa0365380:intron 45.0%
GTTCGAACACTGACACATGT+TGG - chr3_1:59426106-59426125 None:intergenic 45.0%
TCCGAGTGTTTGTGCTTCAT+AGG + chr3_1:59426182-59426201 Msa0365380:intron 45.0%
CCCTATGAAGCACAAACACT+CGG - chr3_1:59426186-59426205 None:intergenic 45.0%
CCGAGTGTTTGTGCTTCATA+GGG + chr3_1:59426183-59426202 Msa0365380:intron 45.0%
TCATGGTTCCTGCACATGTA+TGG - chr3_1:59426436-59426455 None:intergenic 45.0%
ATGTGCAGGAACCATGAGAA+TGG + chr3_1:59426439-59426458 Msa0365380:intron 45.0%
TAGTTCCTCACATGGCAACT+AGG + chr3_1:59426471-59426490 Msa0365380:five_prime_UTR 45.0%
TGTTTCCTAGTTGCCATGTG+AGG - chr3_1:59426479-59426498 None:intergenic 45.0%
TCACATGGCAACTAGGAAAC+AGG + chr3_1:59426478-59426497 Msa0365380:five_prime_UTR 45.0%
CACATGGCAACTAGGAAACA+GGG + chr3_1:59426479-59426498 Msa0365380:five_prime_UTR 45.0%
! CTTTGTTGTGGTGTACGTGA+AGG + chr3_1:59426691-59426710 Msa0365380:intron 45.0%
TGGGAAAACCGAACCGTTTA+AGG + chr3_1:59426823-59426842 Msa0365380:intron 45.0%
! GTGATGGAATTTGAGGCACT+TGG + chr3_1:59427049-59427068 Msa0365380:intron 45.0%
!! GTCCAATTCGGTTTGGTTCT+TGG + chr3_1:59427727-59427746 Msa0365380:intron 45.0%
! AACCAGTGATTTCTAGGGGT+GGG - chr3_1:59427762-59427781 None:intergenic 45.0%
! AAACCAGTGATTTCTAGGGG+TGG - chr3_1:59427763-59427782 None:intergenic 45.0%
!! GTACTAAGGCCAAGTTTTGG+TGG + chr3_1:59428112-59428131 Msa0365380:intron 45.0%
GATGTTGTGAATGTTCTCCC+TGG + chr3_1:59428283-59428302 Msa0365380:five_prime_UTR 45.0%
! TCTCGGATTGCTGCTTCAAA+TGG - chr3_1:59428382-59428401 None:intergenic 45.0%
CGTTTAGCAAACTCGTCTGT+AGG - chr3_1:59428439-59428458 None:intergenic 45.0%
ATGCAGGTGGTTTCTTCCTA+AGG - chr3_1:59428477-59428496 None:intergenic 45.0%
TTAGGAAGAAACCACCTGCA+TGG + chr3_1:59428476-59428495 Msa0365380:five_prime_UTR 45.0%
ACCCGTGCTGTCTATCTTTA+TGG + chr3_1:59428600-59428619 Msa0365380:intron 45.0%
TAGCCGAATAACGTCAAGCA+TGG + chr3_1:59429203-59429222 Msa0365380:intron 45.0%
AGAGAAACTCTCGCAAGTGA+AGG + chr3_1:59429434-59429453 Msa0365380:intron 45.0%
GGACGATAGTTCATTCCTCA+AGG + chr3_1:59429455-59429474 Msa0365380:intron 45.0%
TGGCGTGGAGTTGTTATCAA+TGG - chr3_1:59429712-59429731 None:intergenic 45.0%
GCAGTTCTTGAAGAAGCTTC+TGG - chr3_1:59429732-59429751 None:intergenic 45.0%
CTTCTTCAAGAACTGCCGTA+CGG + chr3_1:59429736-59429755 Msa0365380:five_prime_UTR 45.0%
TTCTTCAAGAACTGCCGTAC+GGG + chr3_1:59429737-59429756 Msa0365380:five_prime_UTR 45.0%
!! GAAGCACCGAAAATAGGTGA+TGG - chr3_1:59429991-59430010 None:intergenic 45.0%
GCTGGTGAACCAATAACATC+TGG + chr3_1:59430014-59430033 Msa0365380:intron 45.0%
ATGCAATGCTACACTTTGGC+TGG + chr3_1:59430062-59430081 Msa0365380:intron 45.0%
AAACTGGTGGTTCTCATCAC+AGG + chr3_1:59430182-59430201 Msa0365380:CDS 45.0%
!! ACGTTCTACAATGGCGGATT+TGG + chr3_1:59430286-59430305 Msa0365380:CDS 45.0%
AACTCTGCTCACGCTTTCAT+CGG - chr3_1:59430354-59430373 None:intergenic 45.0%
TAACGCTGGTGTTCCTTGTA+CGG + chr3_1:59430421-59430440 Msa0365380:CDS 45.0%
!! GTGTTTTGGATTGCAGAGAG+AGG - chr3_1:59425815-59425834 None:intergenic 45.0%
!! GTAATAATGTCGGTGTCGTG+AGG - chr3_1:59430607-59430626 None:intergenic 45.0%
CTATCACTGCATACATGTGC+AGG + chr3_1:59430988-59431007 Msa0365380:intron 45.0%
AGGTTCCATGAGAATGATCC+AGG + chr3_1:59431008-59431027 Msa0365380:intron 45.0%
TGTTTCCTAGTTGCCATGTG+AGG - chr3_1:59426479-59426498 None:intergenic 45.0%
TCACATGGCAACTAGGAAAC+AGG + chr3_1:59426478-59426497 Msa0365380:five_prime_UTR 45.0%
CACATGGCAACTAGGAAACA+GGG + chr3_1:59426479-59426498 Msa0365380:five_prime_UTR 45.0%
ATCCGCTTGTTTCGTTGCTT+TGG + chr3_1:59431261-59431280 Msa0365380:intron 45.0%
! GCCATTTAGAATCTAGTGGC+TGG + chr3_1:59431303-59431322 Msa0365380:intron 45.0%
TTGCCATAAGAGAACCATGC+AGG - chr3_1:59431615-59431634 None:intergenic 45.0%
CTATGCTAGCTAGACTTGGC+TGG + chr3_1:59425412-59425431 Msa0365380:five_prime_UTR 50.0%
CAACCTGTGATGAGAACCAC+TGG - chr3_1:59425539-59425558 None:intergenic 50.0%
GTTCTCATCACAGGTTGCAG+CGG + chr3_1:59425542-59425561 Msa0365380:five_prime_UTR 50.0%
TTTGCAGCTGTTAGCTGCGA+AGG - chr3_1:59425597-59425616 None:intergenic 50.0%
!! ACGTTCAACCATGGCGGATT+TGG + chr3_1:59425637-59425656 Msa0365380:five_prime_UTR 50.0%
GTCTTGATCCAAATCCGCCA+TGG - chr3_1:59425648-59425667 None:intergenic 50.0%
GAGAGAGGAACTTCAGCAAG+TGG - chr3_1:59425800-59425819 None:intergenic 50.0%
! TTCTGTTTGAAGGCGTGTCC+CGG + chr3_1:59426077-59426096 Msa0365380:intron 50.0%
AGGAACCATGAGAATGGTCC+AGG + chr3_1:59426445-59426464 Msa0365380:intron 50.0%
TACAGCCTGGACCATTCTCA+TGG - chr3_1:59426453-59426472 None:intergenic 50.0%
GGTGTACGTGAAGGAAACCT+TGG + chr3_1:59426700-59426719 Msa0365380:intron 50.0%
! GAAATCACTAGGGGTGGGTT+TGG + chr3_1:59426758-59426777 Msa0365380:intron 50.0%
!! ACCATTTGGGATTTGGTGGC+TGG + chr3_1:59428147-59428166 Msa0365380:intron 50.0%
TCCAGCCACCAAATCCCAAA+TGG - chr3_1:59428151-59428170 None:intergenic 50.0%
ATAGTTTCCACTCCGGCATG+CGG - chr3_1:59428354-59428373 None:intergenic 50.0%
CTTCCTAAGGACAGCAGCTA+CGG - chr3_1:59428464-59428483 None:intergenic 50.0%
TCTTGAAGAAGCTTCTGGCG+TGG - chr3_1:59429727-59429746 None:intergenic 50.0%
TGTACCATAGCTAGCCCGTA+CGG - chr3_1:59429754-59429773 None:intergenic 50.0%
GTACACTTGAATGGTCGCTC+TGG + chr3_1:59429769-59429788 Msa0365380:five_prime_UTR 50.0%
CATTCAAGTAGGCGATGACC+AGG - chr3_1:59429819-59429838 None:intergenic 50.0%
GTTCTCATCACAGGTTGCAG+TGG + chr3_1:59425542-59425561 Msa0365380:five_prime_UTR 50.0%
TGCAACCACATTGCAGCTGT+TGG - chr3_1:59430255-59430274 None:intergenic 50.0%
CATTGTAGAACGTGACCTGC+TGG - chr3_1:59430279-59430298 None:intergenic 50.0%
CAGCAGGTCACGTTCTACAA+TGG + chr3_1:59430277-59430296 Msa0365380:CDS 50.0%
CAGGTCACGTTCTACAATGG+CGG + chr3_1:59430280-59430299 Msa0365380:CDS 50.0%
! TGAAAGCGTGAGCAGAGTTG+TGG + chr3_1:59430355-59430374 Msa0365380:CDS 50.0%
AACGCTGGTGTTCCTTGTAC+GGG + chr3_1:59430422-59430441 Msa0365380:CDS 50.0%
AGAGAGGAACCTCAGCAAGT+GGG - chr3_1:59430448-59430467 None:intergenic 50.0%
CACAGCCTGGATCATTCTCA+TGG - chr3_1:59431016-59431035 None:intergenic 50.0%
CATGAGAATGATCCAGGCTG+TGG + chr3_1:59431014-59431033 Msa0365380:CDS 50.0%
TGGTTCCTCACATGGCAACT+AGG + chr3_1:59431034-59431053 Msa0365380:CDS 50.0%
! AGTGTTACTGCGTTAGCCTC+TGG + chr3_1:59431084-59431103 Msa0365380:CDS 50.0%
! GATGTTGTGAGTGTTGTCCC+TGG + chr3_1:59431405-59431424 Msa0365380:CDS 50.0%
ACAGTTTCCACTCTGGCATG+CGG - chr3_1:59431476-59431495 None:intergenic 50.0%
GAGACAGTAGAGCTCTCTCT+CGG - chr3_1:59431521-59431540 None:intergenic 50.0%
GAGAGAGAGCTCTACTGTCT+CGG + chr3_1:59431520-59431539 Msa0365380:CDS 50.0%
CCATAAGAGAACCATGCAGG+TGG - chr3_1:59431612-59431631 None:intergenic 50.0%
CCACCTGCATGGTTCTCTTA+TGG + chr3_1:59431609-59431628 Msa0365380:CDS 50.0%
CGCAGCTAACAGCTGCAAAG+TGG + chr3_1:59425598-59425617 Msa0365380:five_prime_UTR 55.0%
GCAAAGTGGTTGCAACCAGC+AGG + chr3_1:59425612-59425631 Msa0365380:five_prime_UTR 55.0%
CATGGTTGAACGTGACCTGC+TGG - chr3_1:59425630-59425649 None:intergenic 55.0%
CAGCAGGTCACGTTCAACCA+TGG + chr3_1:59425628-59425647 Msa0365380:five_prime_UTR 55.0%
CAGGTCACGTTCAACCATGG+CGG + chr3_1:59425631-59425650 Msa0365380:five_prime_UTR 55.0%
ACTGACACATGTTGGGCACC+GGG - chr3_1:59426098-59426117 None:intergenic 55.0%
CACTGACACATGTTGGGCAC+CGG - chr3_1:59426099-59426118 None:intergenic 55.0%
CCATGTGAGGAACTACAGCC+TGG - chr3_1:59426466-59426485 None:intergenic 55.0%
CCAGGCTGTAGTTCCTCACA+TGG + chr3_1:59426463-59426482 Msa0365380:five_prime_UTR 55.0%
TGCCCACCCCTAGAAATCAC+TGG + chr3_1:59427757-59427776 Msa0365380:intron 55.0%
GCGGTTGTAGATGGCTATGC+CGG - chr3_1:59428335-59428354 None:intergenic 55.0%
AGCCATCTACAACCGCATGC+CGG + chr3_1:59428339-59428358 Msa0365380:five_prime_UTR 55.0%
CCATACGAGAACCATGCAGG+TGG - chr3_1:59428490-59428509 None:intergenic 55.0%
CCACCTGCATGGTTCTCGTA+TGG + chr3_1:59428487-59428506 Msa0365380:intron 55.0%
TGGCCATACGAGAACCATGC+AGG - chr3_1:59428493-59428512 None:intergenic 55.0%
CACTTGAATGGTCGCTCTGG+AGG + chr3_1:59429772-59429791 Msa0365380:five_prime_UTR 55.0%
CTCATCACAGGTTGCAGTGG+AGG + chr3_1:59430194-59430213 Msa0365380:CDS 55.0%
ATCACAGGTTGCAGTGGAGG+AGG + chr3_1:59430197-59430216 Msa0365380:CDS 55.0%
! GGTTGCAGTGGAGGAGGTAT+TGG + chr3_1:59430203-59430222 Msa0365380:CDS 55.0%
! ATTGCAGCTGTTGGCTGCGA+AGG - chr3_1:59430246-59430265 None:intergenic 55.0%
GCAATGTGGTTGCAACCAGC+AGG + chr3_1:59430261-59430280 Msa0365380:CDS 55.0%
GAGAGAGGAACCTCAGCAAG+TGG - chr3_1:59430449-59430468 None:intergenic 55.0%
ACTGACACGTCTCTGACACC+GGG - chr3_1:59430575-59430594 None:intergenic 55.0%
CACTGACACGTCTCTGACAC+CGG - chr3_1:59430576-59430595 None:intergenic 55.0%
! TGCGTTAGCCTCTGGACCTT+GGG + chr3_1:59431092-59431111 Msa0365380:CDS 55.0%
! GCACTATAAGTACCGCCCCA+AGG - chr3_1:59431111-59431130 None:intergenic 55.0%
GCGGTTGTAGATGGCTATGC+CGG - chr3_1:59428335-59428354 None:intergenic 55.0%
CTCTGGCATGCGGTTGTAGA+TGG - chr3_1:59431466-59431485 None:intergenic 55.0%
TCTACAACCGCATGCCAGAG+TGG + chr3_1:59431466-59431485 Msa0365380:CDS 55.0%
AGAGAGCTCTACTGTCTCGG+AGG + chr3_1:59431523-59431542 Msa0365380:CDS 55.0%
CTCATCACAGGTTGCAGCGG+AGG + chr3_1:59425545-59425564 Msa0365380:five_prime_UTR 60.0%
ATCACAGGTTGCAGCGGAGG+AGG + chr3_1:59425548-59425567 Msa0365380:five_prime_UTR 60.0%
! GGTTGCAGCGGAGGAGGTAT+AGG + chr3_1:59425554-59425573 Msa0365380:five_prime_UTR 60.0%
CTCCGGCATGCGGTTGTAGA+TGG - chr3_1:59428344-59428363 None:intergenic 60.0%
TCTACAACCGCATGCCGGAG+TGG + chr3_1:59428344-59428363 Msa0365380:five_prime_UTR 60.0%
GCACCGTAGCTGCTGTCCTT+AGG + chr3_1:59428458-59428477 Msa0365380:five_prime_UTR 60.0%
!! ACTGCCGTACGGGCTAGCTA+TGG + chr3_1:59429747-59429766 Msa0365380:five_prime_UTR 60.0%
CGCAGCCAACAGCTGCAATG+TGG + chr3_1:59430247-59430266 Msa0365380:CDS 60.0%
TCAGCAAGTGGGCCCGTACA+AGG - chr3_1:59430437-59430456 None:intergenic 60.0%
! TTGTACGGGCCCACTTGCTG+AGG + chr3_1:59430436-59430455 Msa0365380:CDS 60.0%
TCTGTAAGGCAGGCGTGTCC+CGG + chr3_1:59430554-59430573 Msa0365380:intron 60.0%
CCATGTGAGGAACCACAGCC+TGG - chr3_1:59431029-59431048 None:intergenic 60.0%
CCAGGCTGTGGTTCCTCACA+TGG + chr3_1:59431026-59431045 Msa0365380:CDS 60.0%
! CTGCGTTAGCCTCTGGACCT+TGG + chr3_1:59431091-59431110 Msa0365380:CDS 60.0%
! GCGTTAGCCTCTGGACCTTG+GGG + chr3_1:59431093-59431112 Msa0365380:CDS 60.0%
TTAGCCTCTGGACCTTGGGG+CGG + chr3_1:59431096-59431115 Msa0365380:CDS 60.0%
AGTACCGCCCCAAGGTCCAG+AGG - chr3_1:59431103-59431122 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 59425410 59431713 59425410 ID=Msa0365380;Name=Msa0365380
chr3_1 mRNA 59425410 59431713 59425410 ID=Msa0365380-mRNA-1;Parent=Msa0365380;Name=Msa0365380-mRNA-1;_AED=0.25;_eAED=0.26;_QI=972|0.33|0.28|0.85|1|1|7|0|283
chr3_1 exon 59425410 59425854 59425410 ID=Msa0365380-mRNA-1:exon:11350;Parent=Msa0365380-mRNA-1
chr3_1 exon 59426447 59426579 59426447 ID=Msa0365380-mRNA-1:exon:11351;Parent=Msa0365380-mRNA-1
chr3_1 exon 59428258 59428497 59428258 ID=Msa0365380-mRNA-1:exon:11352;Parent=Msa0365380-mRNA-1
chr3_1 exon 59429704 59429837 59429704 ID=Msa0365380-mRNA-1:exon:11353;Parent=Msa0365380-mRNA-1
chr3_1 exon 59430126 59430503 59430126 ID=Msa0365380-mRNA-1:exon:11354;Parent=Msa0365380-mRNA-1
chr3_1 exon 59431010 59431169 59431010 ID=Msa0365380-mRNA-1:exon:11355;Parent=Msa0365380-mRNA-1
chr3_1 exon 59431380 59431713 59431380 ID=Msa0365380-mRNA-1:exon:11356;Parent=Msa0365380-mRNA-1
chr3_1 five_prime_UTR 59425410 59425854 59425410 ID=Msa0365380-mRNA-1:five_prime_utr;Parent=Msa0365380-mRNA-1
chr3_1 five_prime_UTR 59426447 59426579 59426447 ID=Msa0365380-mRNA-1:five_prime_utr;Parent=Msa0365380-mRNA-1
chr3_1 five_prime_UTR 59428258 59428497 59428258 ID=Msa0365380-mRNA-1:five_prime_utr;Parent=Msa0365380-mRNA-1
chr3_1 five_prime_UTR 59429704 59429837 59429704 ID=Msa0365380-mRNA-1:five_prime_utr;Parent=Msa0365380-mRNA-1
chr3_1 five_prime_UTR 59430126 59430145 59430126 ID=Msa0365380-mRNA-1:five_prime_utr;Parent=Msa0365380-mRNA-1
chr3_1 CDS 59430146 59430503 59430146 ID=Msa0365380-mRNA-1:cds;Parent=Msa0365380-mRNA-1
chr3_1 CDS 59431010 59431169 59431010 ID=Msa0365380-mRNA-1:cds;Parent=Msa0365380-mRNA-1
chr3_1 CDS 59431380 59431713 59431380 ID=Msa0365380-mRNA-1:cds;Parent=Msa0365380-mRNA-1
Gene Sequence

>Msa0365380

ATGGAGAAGATCAACAGCAATGATCAAGAAGACTCAAAACTGGTGGTTCTCATCACAGGTTGCAGTGGAGGAGGTATTGGTAACGCGCTTGCACGCTCCTTCGCAGCCAACAGCTGCAATGTGGTTGCAACCAGCAGGTCACGTTCTACAATGGCGGATTTGGATCAAGATCCTAGATTCTTCCTTCAAGAACTCAATGTTCAGTCCGATGAAAGCGTGAGCAGAGTTGTGGATACTGTTTTGAATAAATTTGGTCGCATAGATGTTCTTGTTAATAACGCTGGTGTTCCTTGTACGGGCCCACTTGCTGAGGTTCCTCTCTCTGCAATCCAAAACACGTTTGATACTAACGTCTTTGGTTCCATGAGAATGATCCAGGCTGTGGTTCCTCACATGGCAACTAGGAAACAGGGAAAGATTGTTAACGTTGGAAGTGTTACTGCGTTAGCCTCTGGACCTTGGGGCGGTACTTATAGTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTGAGATTAGAACTTGGACATTTTGGAATTGATGTTGTGAGTGTTGTCCCTGGAGCTGTGAAGTCAAATATGGGAAATTCCGGCATAGCCATCTACAACCGCATGCCAGAGTGGAAACTGTTCAAATCATTTGAAGCAGTAATCCGAGAGAGAGCTCTACTGTCTCGGAGGTTAAAACAAACCCCTACAGACGAGTTTGCTAAACACACCGTAGCTGCTATCCTAAGAAAGAAACCACCTGCATGGTTCTCTTATGGCAATTATTCTACTGTCATGGCTATTATGTACTATTTACCTCTCTGTGTTAGAGACTTTCTTTTGAAGAAAGCAATGAAATAA
Protein sequence

>Msa0365380

MEKINSNDQEDSKLVVLITGCSGGGIGNALARSFAANSCNVVATSRSRSTMADLDQDPRFFLQELNVQSDESVSRVVDTVLNKFGRIDVLVNNAGVPCTGPLAEVPLSAIQNTFDTNVFGSMRMIQAVVPHMATRKQGKIVNVGSVTALASGPWGGTYSASKAALHALTDTLRLELGHFGIDVVSVVPGAVKSNMGNSGIAIYNRMPEWKLFKSFEAVIRERALLSRRLKQTPTDEFAKHTVAAILRKKPPAWFSYGNYSTVMAIMYYLPLCVRDFLLKKAMK*