AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002700 MtrunA17_Chr1g0173381 100.000 444 0 0 1 444 413 856 0.0 921
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002700 AT5G13630.1 90.315 444 43 0 2 445 412 855 0.0 847
Msa0002700 AT5G13630.2 90.315 444 43 0 2 445 412 855 0.0 846

Find 346 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTTGTTCAAAATTTA+AGG 0.029079 1_1:+4866893 Msa0002700:three_prime_UTR
TTTCCTGTTGGTAAAACTTT+AGG 0.150723 1_1:-4865901 None:intergenic
CCAAGCTCTTCAAGGCTTAC+AGG 0.177877 1_1:-4866171 None:intergenic
CCTATCACCTCGGTAAAATT+TGG 0.179718 1_1:-4865740 None:intergenic
CAATCTCTCTACCACTATTT+TGG 0.194233 1_1:-4865980 None:intergenic
CCACAGCATTAGAAGAAAAT+TGG 0.204481 1_1:+4864722 Msa0002700:CDS
CTCACTGGATTTGCTCTTGT+TGG 0.205906 1_1:+4862998 Msa0002700:five_prime_UTR
AATTTCTTGAAGATGATTTC+TGG 0.209710 1_1:+4862600 Msa0002700:five_prime_UTR
AGTTGATCAACTTTAGAATT+TGG 0.219361 1_1:-4861862 None:intergenic
TTAGAATTTGGTAGAGTAAA+TGG 0.219936 1_1:-4861850 None:intergenic
TTCCTGTTGGTAAAACTTTA+GGG 0.231681 1_1:-4865900 None:intergenic
TCTAGCCCTCCGGCGAAAAT+TGG 0.232885 1_1:-4862903 None:intergenic
TCCAATGAAAACGGTTTCTA+TGG 0.257552 1_1:-4861534 None:intergenic
ACAAATGGTTTCTTAGTAAT+AGG 0.269270 1_1:-4862959 None:intergenic
CAAAGGAGTCATATTGTTAC+TGG 0.270706 1_1:+4862819 Msa0002700:five_prime_UTR
ATGATGAGGGCTTGCAGATT+TGG 0.274240 1_1:-4864875 None:intergenic
AAGAAATTCTGCAAATTATC+AGG 0.274265 1_1:-4862585 None:intergenic
ATATCTTGAGTCTACAGTTT+TGG 0.275285 1_1:+4862550 Msa0002700:five_prime_UTR
TATAAAATTGGAAGATATAT+TGG 0.277815 1_1:-4867907 None:intergenic
TCTTCTTCAGATGAATCTTC+TGG 0.278031 1_1:+4866486 Msa0002700:intron
CATGTCTTTATATATAAAAT+TGG 0.280339 1_1:-4867919 None:intergenic
CTCATCCCTACCTGCTTTCC+AGG 0.282649 1_1:-4864988 None:intergenic
AAGCCAATGGACGCGGATAT+TGG 0.283143 1_1:+4867588 Msa0002700:three_prime_UTR
TCATTACGTTGCTGTGATTA+TGG 0.283792 1_1:+4862851 Msa0002700:five_prime_UTR
GCTGATGCTGTTCTTCATTT+CGG 0.304689 1_1:+4864940 Msa0002700:CDS
GCATTTGCAACTGCACAAAA+AGG 0.305978 1_1:-4867871 None:intergenic
GGACAGGATGGATGCAGTTT+TGG 0.317279 1_1:+4862314 Msa0002700:five_prime_UTR
TTGTAAGCAATGTTGAGATT+TGG 0.321057 1_1:-4864661 None:intergenic
TTTCCGATGAGTCAAGGTTT+TGG 0.325504 1_1:-4866828 None:intergenic
AACATGCCTTCATACCATTT+GGG 0.328582 1_1:-4867368 None:intergenic
GGTGATGAGGTTGAACAAAT+TGG 0.329239 1_1:+4862356 Msa0002700:five_prime_UTR
CAGTGACAAAGGAGTATTAA+AGG 0.335696 1_1:+4865552 Msa0002700:three_prime_UTR
GCTCAGGTTCTGTGGATGAT+TGG 0.337444 1_1:+4866102 Msa0002700:three_prime_UTR
AGTGGCAAAGCAACAATATA+AGG 0.338462 1_1:-4863079 None:intergenic
GTTGGATGGAGTGCAACTTC+TGG 0.339333 1_1:+4867443 Msa0002700:three_prime_UTR
AAGATGAAATCTCTATATAA+TGG 0.339641 1_1:-4867945 None:intergenic
TAACATGCCTTCATACCATT+TGG 0.343041 1_1:-4867369 None:intergenic
TATGGTTAGTGGTGAAAGTT+TGG 0.345707 1_1:-4861516 None:intergenic
CTTCTGGACAAGTTGACAAT+TGG 0.346443 1_1:+4867459 Msa0002700:three_prime_UTR
CTCATCACCTCAGGCATTGA+TGG 0.348300 1_1:-4862342 None:intergenic
ACACTCTGAGCTAGTATAGA+AGG 0.354279 1_1:-4865498 None:intergenic
CACAGCATTAGAAGAAAATT+GGG 0.354684 1_1:+4864723 Msa0002700:CDS
GAAGATGCTAATATCTTCAT+TGG 0.357021 1_1:+4862231 Msa0002700:five_prime_UTR
GTTCCTACATTTCCTTTGTC+TGG 0.357797 1_1:-4864493 None:intergenic
GAAGCTGGTGCAAACATTCT+TGG 0.362090 1_1:+4867565 Msa0002700:three_prime_UTR
TGTAAGCAATGTTGAGATTT+GGG 0.367376 1_1:-4864660 None:intergenic
CACAGCCAGGTTTATGTTTG+AGG 0.367959 1_1:-4866656 None:intergenic
GCACAAATCCCAACTCCTTC+AGG 0.369393 1_1:+4867543 Msa0002700:three_prime_UTR
ATCGGGTCGCCTCCAGGTCC+TGG 0.370873 1_1:-4865871 None:intergenic
ATATATTGGCTAAGTTTGTT+TGG 0.371388 1_1:-4867893 None:intergenic
AACCAAGTTTCAGAGAAATA+AGG 0.371756 1_1:-4867738 None:intergenic
TGCATTGCATTTCAATCTAA+AGG 0.373359 1_1:-4861965 None:intergenic
CTCTGCTGGTTCGTCTAATT+CGG 0.375638 1_1:-4866530 None:intergenic
AAATGCACCTGTTGTTGGTT+TGG 0.377667 1_1:+4862791 Msa0002700:five_prime_UTR
TGTTGGAGGGCCTGCTAGAC+AGG 0.383679 1_1:+4863015 Msa0002700:five_prime_UTR
GTTCAAAATTTAAGGAAAGA+TGG 0.385666 1_1:+4866901 Msa0002700:three_prime_UTR
GCAGCATAGTAATAGACATT+TGG 0.387540 1_1:-4865048 None:intergenic
AAACTTTAGGGTTTCTGATC+GGG 0.387766 1_1:-4865888 None:intergenic
GGAGAGAATCTGTTGGTATA+TGG 0.388264 1_1:+4864775 Msa0002700:CDS
TGAATTGGTATGGAACTAGA+AGG 0.388661 1_1:+4862742 Msa0002700:five_prime_UTR
AACAAGATCTCGCTCTTTAG+TGG 0.389853 1_1:-4865319 None:intergenic
ATAGGTGTTCAACCTACATT+TGG 0.390010 1_1:+4864820 Msa0002700:CDS
TTTCTGATCGGGTCGCCTCC+AGG 0.395290 1_1:-4865877 None:intergenic
TCAACCACTCTTCAGTTGTC+TGG 0.395716 1_1:-4863108 None:intergenic
ACTTGAAGAGCAACTTGAAT+TGG 0.395908 1_1:-4863151 None:intergenic
AGCCAATGGACGCGGATATT+GGG 0.396390 1_1:+4867589 Msa0002700:three_prime_UTR
CCTAAGAAAACCAATTACTA+TGG 0.396414 1_1:+4861928 Msa0002700:five_prime_UTR
CTGATACCTGATTGATGAAA+AGG 0.396424 1_1:-4866242 None:intergenic
CTTACATAGTTCATCTCTGC+TGG 0.399333 1_1:-4866544 None:intergenic
TTGGTATATGGTAAGCAATA+TGG 0.404856 1_1:+4864787 Msa0002700:CDS
AATTGCTCCGCGTGATGCTT+CGG 0.405221 1_1:-4865599 None:intergenic
TTATATTGTTGCTTTGCCAC+TGG 0.407521 1_1:+4863081 Msa0002700:CDS
TTACAATAAAGAGCAAGTTT+TGG 0.407523 1_1:-4861752 None:intergenic
CAGGTTTATGTTTGAGGAGT+AGG 0.410638 1_1:-4866650 None:intergenic
TTTCTTCTTGTTCTTCTATG+TGG 0.410823 1_1:-4861602 None:intergenic
ACTGGATTTGCTCTTGTTGG+AGG 0.412121 1_1:+4863001 Msa0002700:five_prime_UTR
AGTTCAAATGCACCTGTTGT+TGG 0.412786 1_1:+4862786 Msa0002700:five_prime_UTR
ATCTTTGTACCTTTCAATGC+TGG 0.413975 1_1:-4862633 None:intergenic
GAGTGGTTGAATAGTACTTT+GGG 0.415105 1_1:+4863121 Msa0002700:CDS
AAAGAGCGAGATCTTGTTGT+TGG 0.415342 1_1:+4865324 Msa0002700:CDS
CTGGATTTGCTCTTGTTGGA+GGG 0.415619 1_1:+4863002 Msa0002700:five_prime_UTR
TAAAGGATGTAGAGCTTCTT+CGG 0.416816 1_1:+4865569 Msa0002700:three_prime_UTR
CCTTGTGGACTCCATGTCAT+TGG 0.417130 1_1:+4865390 Msa0002700:CDS
AAATTTGGGTTGATGATCAA+TGG 0.418917 1_1:+4861810 Msa0002700:five_prime_UTR
CTAGTGGTTATGAGGGTGTT+CGG 0.420010 1_1:+4867393 Msa0002700:three_prime_UTR
ACCAGCTTCCTGAAGGAGTT+GGG 0.423566 1_1:-4867551 None:intergenic
AGATTGAAATGCAATGCAAT+TGG 0.427450 1_1:+4861970 Msa0002700:five_prime_UTR
AAGAAGAATACTTCTTCAGC+TGG 0.430435 1_1:+4862438 Msa0002700:five_prime_UTR
CAATATGGTAATGTATTCAT+AGG 0.430782 1_1:+4864802 Msa0002700:CDS
GCTTTCCAGGCATGAATTCA+AGG 0.431681 1_1:-4864975 None:intergenic
AAAGAGTATTTGAATTGGTA+TGG 0.436541 1_1:+4862732 Msa0002700:five_prime_UTR
GGAAGCTCCACACCCTCCTC+TGG 0.436994 1_1:-4865297 None:intergenic
AGTACAAGGGCAACTGTCTC+AGG 0.436994 1_1:-4866039 None:intergenic
GATTGTGATGCTCCTGGTGC+AGG 0.439076 1_1:+4866748 Msa0002700:three_prime_UTR
TAGGTCTTCCAAGCTCTTCA+AGG 0.440235 1_1:-4866179 None:intergenic
TGGCTGTGGAGAATTCTTCA+TGG 0.440253 1_1:+4866671 Msa0002700:three_prime_UTR
CGAAAATGCAGGACTGTACA+AGG 0.441945 1_1:+4865146 Msa0002700:CDS
CACCAGCTTCCTGAAGGAGT+TGG 0.442281 1_1:-4867552 None:intergenic
CTCTACAAATTTACCTTCCA+AGG 0.442552 1_1:-4865848 None:intergenic
TGGAGGAGTAAGATAGCTTA+TGG 0.442966 1_1:-4865121 None:intergenic
TAGTGGTTATGAGGGTGTTC+GGG 0.443943 1_1:+4867394 Msa0002700:three_prime_UTR
TTCTGCTAAGGTACATGTCT+TGG 0.445406 1_1:-4866711 None:intergenic
TTGGCTATGGTAGCCTCTGA+AGG 0.445632 1_1:-4865078 None:intergenic
GAAAATTGGGGAAAGCCTCC+TGG 0.445986 1_1:+4864736 Msa0002700:CDS
ACAGATAATATTAAGACATA+TGG 0.446503 1_1:+4866069 Msa0002700:three_prime_UTR
GCTGGTCGGGATCCCAAAAC+AGG 0.449426 1_1:+4863217 Msa0002700:CDS
AAATGCAATGCAATTGGTAA+TGG 0.450220 1_1:+4861976 Msa0002700:five_prime_UTR
ATCAAAGCTTCAATAGCCCT+TGG 0.450638 1_1:-4863043 None:intergenic
AGCAACTGCTTCCATGGCTG+TGG 0.450885 1_1:-4865421 None:intergenic
GGGAAGTTTAAAACAAGCCT+TGG 0.450982 1_1:+4865831 Msa0002700:three_prime_UTR
GCATCTTGAGCTTTATCACT+TGG 0.453125 1_1:-4862519 None:intergenic
CATGGAGTCCACAAGGCAAC+AGG 0.453384 1_1:-4865383 None:intergenic
ATTTGCGTAGCTCCTGCGTT+TGG 0.458715 1_1:-4865097 None:intergenic
GTTGCATTGCCAGAGCTAGA+TGG 0.458979 1_1:+4863172 Msa0002700:CDS
CTTACCTCCATCCTTGGATT+CGG 0.459055 1_1:+4865682 Msa0002700:three_prime_UTR
TCCCAACTCCTTCAGGAAGC+TGG 0.459347 1_1:+4867550 Msa0002700:three_prime_UTR
AGAGTGGTTGAATAGTACTT+TGG 0.460158 1_1:+4863120 Msa0002700:CDS
TTCAAAATTTAAGGAAAGAT+GGG 0.460190 1_1:+4866902 Msa0002700:three_prime_UTR
AATAAACTTACCTCCATCCT+TGG 0.461503 1_1:+4865676 Msa0002700:three_prime_UTR
TTCTGGACAAGTTGACAATT+GGG 0.462149 1_1:+4867460 Msa0002700:three_prime_UTR
ATAGTTTCTTCCAATGAAAA+CGG 0.462623 1_1:-4861543 None:intergenic
CTACATTTCCTTTGTCTGGC+GGG 0.463784 1_1:-4864489 None:intergenic
GTCTTGAATGAATGTTGTGT+TGG 0.464042 1_1:-4867495 None:intergenic
CTCTCCATTGCTGCTGTAGT+AGG 0.464264 1_1:-4865955 None:intergenic
GGTAAATACTTCAAAACCTT+AGG 0.465580 1_1:-4862498 None:intergenic
GACGTCGTCGTTAATTGCTC+TGG 0.466194 1_1:+4866207 Msa0002700:three_prime_UTR
GGTTCCCTTGAATTCATGCC+TGG 0.466716 1_1:+4864970 Msa0002700:CDS
TCTTCTAATGCTGTGGCATA+GGG 0.468263 1_1:-4864715 None:intergenic
TGAGGGAAAGATGGTATTTG+AGG 0.468383 1_1:-4861726 None:intergenic
AAATGGAGGAGAAAACGTTT+AGG 0.469039 1_1:-4864525 None:intergenic
CAATGTAGCAACTGCTTCCA+TGG 0.470298 1_1:-4865427 None:intergenic
AGTACTTGGGAGAATGTTTG+AGG 0.471779 1_1:+4865785 Msa0002700:three_prime_UTR
CATACATACAAGGTGCTAAA+GGG 0.474043 1_1:-4862701 None:intergenic
TGAGAAACACAACTCAACTT+TGG 0.474199 1_1:+4861659 Msa0002700:five_prime_UTR
TTCTTCTAATGCTGTGGCAT+AGG 0.474834 1_1:-4864716 None:intergenic
CAGCAGAGATGAACTATGTA+AGG 0.475157 1_1:+4866545 Msa0002700:three_prime_UTR
CTTGGATGATCCTGTCTAGC+AGG 0.475362 1_1:-4863025 None:intergenic
TACCTTATTTCTCTGAAACT+TGG 0.477509 1_1:+4867736 Msa0002700:three_prime_UTR
TGAATTCATGCCTGGAAAGC+AGG 0.481681 1_1:+4864978 Msa0002700:CDS
TAGGAATAGATTGTGGATCC+AGG 0.482376 1_1:-4865936 None:intergenic
AGAGCGCACTACTAATAGTA+AGG 0.482393 1_1:+4865633 Msa0002700:three_prime_UTR
AATCAATGCTTCTGAAGTCT+CGG 0.483709 1_1:-4864599 None:intergenic
GAGTGGAGCAGCTTTGCACC+AGG 0.483821 1_1:+4863731 Msa0002700:CDS
TGCAAAACCAAACCAACAAC+AGG 0.486344 1_1:-4862798 None:intergenic
CATGGAAGCAGTTGCTACAT+TGG 0.487820 1_1:+4865428 Msa0002700:CDS
TTCCCAATATCCGCGTCCAT+TGG 0.488102 1_1:-4867591 None:intergenic
TACATTAACAATGATGCCAT+TGG 0.489859 1_1:-4867785 None:intergenic
CATGTTATCTAGTGGTTATG+AGG 0.489935 1_1:+4867385 Msa0002700:three_prime_UTR
AAAACGGTTTCTATGGTTAG+TGG 0.490304 1_1:-4861527 None:intergenic
TCCATTCCTCCATCTAGCTC+TGG 0.490366 1_1:-4863181 None:intergenic
GTAGCTCCTGCGTTTGGCTA+TGG 0.491501 1_1:-4865091 None:intergenic
TATCTGTTCCCCACAGTACA+AGG 0.491790 1_1:-4866053 None:intergenic
TACCTGGGCATTGGCAGTGG+TGG 0.492165 1_1:-4866953 None:intergenic
AATCCCTTGCTCAGGTTCTG+TGG 0.492849 1_1:+4866094 Msa0002700:three_prime_UTR
CCAAGCTGTTGAACCCCAAA+TGG 0.494653 1_1:+4867354 Msa0002700:three_prime_UTR
TCATACATACAAGGTGCTAA+AGG 0.498214 1_1:-4862702 None:intergenic
AGTGATGGTTACAATGTTGA+AGG 0.498990 1_1:+4864571 Msa0002700:CDS
ACGTGGCAAAATGTAGTCAT+TGG 0.500416 1_1:-4861490 None:intergenic
CCATTTGGGGTTCAACAGCT+TGG 0.501266 1_1:-4867354 None:intergenic
AAGCTGCTGTTGAGAAAGAA+AGG 0.502411 1_1:+4862292 Msa0002700:five_prime_UTR
GATATCACAGAATTCACAAA+TGG 0.502956 1_1:-4862974 None:intergenic
TTTCCAAAACCTTGACTCAT+CGG 0.503416 1_1:+4866825 Msa0002700:three_prime_UTR
ATGAAGAATTCTCCACAGCC+AGG 0.504233 1_1:-4866669 None:intergenic
ATGTCAAAGAGTATTTGAAT+TGG 0.504263 1_1:+4862727 Msa0002700:five_prime_UTR
CTTCTCGAACTTCAACCCCT+AGG 0.505192 1_1:-4866594 None:intergenic
CTCAGCCCATCTGATTGCCC+TGG 0.505958 1_1:-4863749 None:intergenic
AAGAAAACATTGAGAAGTTG+AGG 0.507918 1_1:+4867621 Msa0002700:three_prime_UTR
TTGTTCAACCTCATCACCTC+AGG 0.508260 1_1:-4862351 None:intergenic
GGAGTAGGATCCTGAGGCAT+TGG 0.508323 1_1:-4866635 None:intergenic
TTCTCGAACTTCAACCCCTA+GGG 0.508890 1_1:-4866593 None:intergenic
ATCAATGCTTCTGAAGTCTC+GGG 0.509386 1_1:-4864598 None:intergenic
AAAACTTTAGGGTTTCTGAT+CGG 0.510451 1_1:-4865889 None:intergenic
TCAATGAAGAACTTCTCAAC+CGG 0.510611 1_1:-4862935 None:intergenic
AAATTTGTAGAGCCAGGACC+TGG 0.510710 1_1:+4865859 Msa0002700:three_prime_UTR
AAGAGCGAGATCTTGTTGTT+GGG 0.510971 1_1:+4865325 Msa0002700:CDS
CTAAAAGAACTTCAAAGTGA+TGG 0.511192 1_1:+4864556 Msa0002700:CDS
TGGTAGAGAGATTGCTTGAA+AGG 0.512014 1_1:+4865989 Msa0002700:three_prime_UTR
TGGCATAGGGAGTGAGAGCT+TGG 0.512578 1_1:-4864702 None:intergenic
AAGTCGAACTGTCTCTGAAA+GGG 0.514784 1_1:-4867321 None:intergenic
GAAGTGGAAGATAAAATTGA+AGG 0.516822 1_1:+4867656 Msa0002700:three_prime_UTR
AGGAAAGAATATTCATGCCC+TGG 0.518876 1_1:+4865918 Msa0002700:three_prime_UTR
GCTTGTGAGGACTTTGCCTA+AGG 0.519621 1_1:+4862482 Msa0002700:five_prime_UTR
AGGATCTTCTCCAATGCCTC+AGG 0.520022 1_1:+4866625 Msa0002700:three_prime_UTR
GCATGAATATTCTTTCCTGT+TGG 0.520661 1_1:-4865913 None:intergenic
CCTGTAAGCCTTGAAGAGCT+TGG 0.521389 1_1:+4866171 Msa0002700:three_prime_UTR
AGACAGTTGCCCTTGTACTG+TGG 0.524055 1_1:+4866043 Msa0002700:three_prime_UTR
AATGGAGAGTGCCAAAATAG+TGG 0.525754 1_1:+4865969 Msa0002700:three_prime_UTR
GTGATGAGGTTGAACAAATT+GGG 0.525757 1_1:+4862357 Msa0002700:five_prime_UTR
GCACTTGATCGTGTGGAAGA+AGG 0.526412 1_1:+4865462 Msa0002700:CDS
ATGGAACAAGCTGAAGCCCT+AGG 0.527755 1_1:+4866577 Msa0002700:three_prime_UTR
ATGCAATCTCGACAAGGATG+TGG 0.527790 1_1:+4865269 Msa0002700:CDS
TTTGCACCAGGGCAATCAGA+TGG 0.527982 1_1:+4863743 Msa0002700:CDS
CTTCCGAGGTTATCAGCTAT+CGG 0.530437 1_1:-4866132 None:intergenic
GAAGGTAAATTTGTAGAGCC+AGG 0.531858 1_1:+4865853 Msa0002700:three_prime_UTR
GTGATAAAGCTCAAGATGCT+AGG 0.532035 1_1:+4862523 Msa0002700:five_prime_UTR
TGGCAACAGCTATCAATTCA+AGG 0.532190 1_1:-4867765 None:intergenic
ATATGGAGAATCCCTTGCTC+AGG 0.535247 1_1:+4866086 Msa0002700:three_prime_UTR
CTGTTGAGAAAGAAAGGGAC+AGG 0.535797 1_1:+4862298 Msa0002700:five_prime_UTR
CTGAGCTAGTATAGAAGGGA+GGG 0.536608 1_1:-4865493 None:intergenic
TATTCCTACTACAGCAGCAA+TGG 0.537673 1_1:+4865951 Msa0002700:three_prime_UTR
GAGTGAGAGCTTGGTATTCA+CGG 0.538327 1_1:-4864693 None:intergenic
CCGCCAGACAAAGGAAATGT+AGG 0.538739 1_1:+4864490 Msa0002700:CDS
TCACTCAAGGACACTGGCCG+CGG 0.538856 1_1:+4865207 Msa0002700:CDS
TTGAACCCCAAATGGTATGA+AGG 0.539742 1_1:+4867362 Msa0002700:three_prime_UTR
CATATTGTTACTGGTGATGA+TGG 0.543100 1_1:+4862828 Msa0002700:five_prime_UTR
GTTCTTCATTTCGGCACACA+CGG 0.543326 1_1:+4864949 Msa0002700:CDS
ATATTCCCGATCAGACTGTC+GGG 0.544764 1_1:-4865024 None:intergenic
TGTGAGTTCAATTATTAGCA+CGG 0.546575 1_1:+4865239 Msa0002700:CDS
CAAGTCGAACTGTCTCTGAA+AGG 0.548201 1_1:-4867322 None:intergenic
ATTGTAGCTGATAATGAAGT+GGG 0.548716 1_1:+4865811 Msa0002700:three_prime_UTR
GATTCGGCATAAACGAGCCA+TGG 0.549574 1_1:+4865698 Msa0002700:three_prime_UTR
GTTATCCCGACAGTCTGATC+GGG 0.550046 1_1:+4865019 Msa0002700:CDS
TGTTATCCCGACAGTCTGAT+CGG 0.550112 1_1:+4865018 Msa0002700:CDS
TTCAGTTTCCCGCCAGACAA+AGG 0.551110 1_1:+4864481 Msa0002700:CDS
AAAATTGGGGAAAGCCTCCT+GGG 0.551960 1_1:+4864737 Msa0002700:CDS
TCTGGATAGAGCAGTGAAGA+TGG 0.553343 1_1:+4866504 Msa0002700:three_prime_UTR
CCTACATTTCCTTTGTCTGG+CGG 0.555098 1_1:-4864490 None:intergenic
CCATCCGCATTCAGATTCCC+AGG 0.556819 1_1:-4864754 None:intergenic
GAATTGGTATGGAACTAGAA+GGG 0.557064 1_1:+4862743 Msa0002700:five_prime_UTR
GAAGGTGTATGCTAAGATCA+TGG 0.558148 1_1:+4865347 Msa0002700:CDS
TCTTATGTTCCAGCATTGAA+AGG 0.558366 1_1:+4862624 Msa0002700:five_prime_UTR
TCCGACAAGTACTGAATCCA+TGG 0.559527 1_1:-4865715 None:intergenic
AGCATTGAAAGGTACAAAGA+TGG 0.560280 1_1:+4862635 Msa0002700:five_prime_UTR
TCCCGACCAGCGAAAACTAT+CGG 0.560614 1_1:-4863205 None:intergenic
ACTGCTTCCATGGCTGTGGG+TGG 0.561275 1_1:-4865417 None:intergenic
CTACTCCTCAAACATAAACC+TGG 0.561850 1_1:+4866651 Msa0002700:three_prime_UTR
AAGAGGCTTACTAACACAGT+TGG 0.562219 1_1:+4867425 Msa0002700:three_prime_UTR
ACTCCTCCAGCCGAAAATGC+AGG 0.564072 1_1:+4865135 Msa0002700:CDS
GGATGTGGATTTGCCAGAGG+AGG 0.564165 1_1:+4865284 Msa0002700:CDS
CCTGGGAATCTGAATGCGGA+TGG 0.565028 1_1:+4864754 Msa0002700:CDS
CGATAGCTGATAACCTCGGA+AGG 0.565402 1_1:+4866133 Msa0002700:three_prime_UTR
TTAACGACGACGTCAACCCT+AGG 0.565771 1_1:-4866198 None:intergenic
GCGAGATCTTGTTGTTGGGA+AGG 0.566549 1_1:+4865329 Msa0002700:CDS
AGGAATAGATTGTGGATCCA+GGG 0.566579 1_1:-4865935 None:intergenic
CACTCTGAGCTAGTATAGAA+GGG 0.566931 1_1:-4865497 None:intergenic
ATTAGTAGTGCGCTCTACAA+AGG 0.567137 1_1:-4865626 None:intergenic
TGGCTATGGTAGCCTCTGAA+GGG 0.567287 1_1:-4865077 None:intergenic
TACCACCACTGCCAATGCCC+AGG 0.567361 1_1:+4866951 Msa0002700:three_prime_UTR
ACATGCCTTCATACCATTTG+GGG 0.567611 1_1:-4867367 None:intergenic
ACTTGAGGCTAAAGGTGCTA+AGG 0.567955 1_1:+4862875 Msa0002700:five_prime_UTR
GACAGTTGCCCTTGTACTGT+GGG 0.568375 1_1:+4866044 Msa0002700:three_prime_UTR
TTCTTGGAAGCCAATGGACG+CGG 0.569693 1_1:+4867581 Msa0002700:three_prime_UTR
CTTTCCAGGCATGAATTCAA+GGG 0.570369 1_1:-4864974 None:intergenic
GAGTCCCGCCTGTTGCCTTG+TGG 0.570560 1_1:+4865375 Msa0002700:CDS
GGATTTGCCAGAGGAGGGTG+TGG 0.570930 1_1:+4865290 Msa0002700:CDS
TGGTGAGCCACCCACAGCCA+TGG 0.572051 1_1:+4865410 Msa0002700:CDS
TCATGCCTGGAAAGCAGGTA+GGG 0.572227 1_1:+4864983 Msa0002700:CDS
GCAACTGCTTCCATGGCTGT+GGG 0.573262 1_1:-4865420 None:intergenic
GCCAGAGCTAGATGGAGGAA+TGG 0.573307 1_1:+4863180 Msa0002700:CDS
AGTTTAAAACAAGCCTTGGA+AGG 0.573560 1_1:+4865835 Msa0002700:three_prime_UTR
GCCATGGATTCAGTACTTGT+CGG 0.574516 1_1:+4865714 Msa0002700:three_prime_UTR
AGCTGCTGTTGAGAAAGAAA+GGG 0.574923 1_1:+4862293 Msa0002700:five_prime_UTR
TGAAGAGCTTGGAAGACCTA+GGG 0.575077 1_1:+4866182 Msa0002700:three_prime_UTR
AATTCTGTGATATCTCTCAC+TGG 0.577320 1_1:+4862983 Msa0002700:five_prime_UTR
TTGCACCAGGGCAATCAGAT+GGG 0.578411 1_1:+4863744 Msa0002700:CDS
AATTGTAGCTGATAATGAAG+TGG 0.581181 1_1:+4865810 Msa0002700:three_prime_UTR
TTGAAGAGCTTGGAAGACCT+AGG 0.581627 1_1:+4866181 Msa0002700:three_prime_UTR
TCACCTTCGTAGCCAAATGT+AGG 0.581846 1_1:-4864832 None:intergenic
TCTATACTAGCTCAGAGTGT+AGG 0.582656 1_1:+4865501 Msa0002700:CDS
CTCAAACATAAACCTGGCTG+TGG 0.583568 1_1:+4866657 Msa0002700:three_prime_UTR
GGGAGATTTCCGATGAGTCA+AGG 0.586930 1_1:-4866834 None:intergenic
ATTGGAGAAGATCCTTGTTG+CGG 0.587479 1_1:-4866617 None:intergenic
AAGCAAAAGACTTTCTGCTA+AGG 0.588891 1_1:-4866723 None:intergenic
TGGAACAAGCTGAAGCCCTA+GGG 0.589177 1_1:+4866578 Msa0002700:three_prime_UTR
ACAAGATCTCGCTCTTTAGT+GGG 0.590525 1_1:-4865318 None:intergenic
TGAGAAAGAAAGGGACAGGA+TGG 0.590862 1_1:+4862302 Msa0002700:five_prime_UTR
CAGCTGCTGAGACTGATGAT+TGG 0.591859 1_1:-4862101 None:intergenic
GAGGCAGTTGTACTCAGAAG+TGG 0.592377 1_1:+4867640 Msa0002700:three_prime_UTR
CTATGTAAGGAAGCATGCAA+TGG 0.593996 1_1:+4866558 Msa0002700:three_prime_UTR
GCTCGTTTATGCCGAATCCA+AGG 0.594381 1_1:-4865693 None:intergenic
GGAGTCCACAAGGCAACAGG+CGG 0.595305 1_1:-4865380 None:intergenic
AAATCTGCAAGCCCTCATCA+TGG 0.595409 1_1:+4864877 Msa0002700:CDS
CAACCTACATTTGGCTACGA+AGG 0.595624 1_1:+4864829 Msa0002700:CDS
CAAACATTCTTGGAAGCCAA+TGG 0.597139 1_1:+4867575 Msa0002700:three_prime_UTR
CTGCTAGACAGGATCATCCA+AGG 0.598388 1_1:+4863026 Msa0002700:five_prime_UTR
TGCTGTGATTATGGAACTTG+AGG 0.601587 1_1:+4862860 Msa0002700:five_prime_UTR
TGTTTGCACCAGCTTCCTGA+AGG 0.602417 1_1:-4867558 None:intergenic
CAAGGCTTACAGGTTCTACA+CGG 0.603134 1_1:-4866161 None:intergenic
GTATCAGCAATATATGCACT+TGG 0.603205 1_1:-4866931 None:intergenic
TCACGCTCTTCACAAGAGAG+TGG 0.605513 1_1:+4863714 Msa0002700:CDS
AAGCAAATTTGAAAGAACAA+AGG 0.605667 1_1:+4861684 Msa0002700:five_prime_UTR
TGCTAGACAGGATCATCCAA+GGG 0.605763 1_1:+4863027 Msa0002700:five_prime_UTR
ATGTTATCTAGTGGTTATGA+GGG 0.606082 1_1:+4867386 Msa0002700:three_prime_UTR
CACAACATTCATTCAAGACG+AGG 0.607395 1_1:+4867499 Msa0002700:three_prime_UTR
GGCTTACTAACACAGTTGGA+TGG 0.608400 1_1:+4867429 Msa0002700:three_prime_UTR
ATTTATAGAAGCAGTGACAA+AGG 0.608838 1_1:+4865541 Msa0002700:exon
CATCAATGCCTGAGGTGATG+AGG 0.609334 1_1:+4862343 Msa0002700:five_prime_UTR
AACTCACAATTTGTTGACCG+CGG 0.612209 1_1:-4865224 None:intergenic
GATGTGGATTTGCCAGAGGA+GGG 0.612511 1_1:+4865285 Msa0002700:CDS
AATATTCCCGATCAGACTGT+CGG 0.612746 1_1:-4865025 None:intergenic
AACGTACGAAACATTCTGCA+AGG 0.613833 1_1:+4862203 Msa0002700:five_prime_UTR
AGCTAGTATAGAAGGGAGGG+AGG 0.614373 1_1:-4865490 None:intergenic
TCATCCACAGAACCTGAGCA+AGG 0.614478 1_1:-4866098 None:intergenic
TTCATGCCTGGAAAGCAGGT+AGG 0.615731 1_1:+4864982 Msa0002700:CDS
GTTTGAGGAGTAGGATCCTG+AGG 0.617687 1_1:-4866641 None:intergenic
CTACACGGTTGACCCTTCCG+AGG 0.618332 1_1:-4866146 None:intergenic
GTTTATGCCGAATCCAAGGA+TGG 0.618597 1_1:-4865689 None:intergenic
GGTGTTTCCATCAATGCCTG+AGG 0.619009 1_1:+4862335 Msa0002700:five_prime_UTR
ATCTGTTCCCCACAGTACAA+GGG 0.619067 1_1:-4866052 None:intergenic
GAGTCCACAAGGCAACAGGC+GGG 0.619334 1_1:-4865379 None:intergenic
AGTTGTCGGTTACTTAGTCG+AGG 0.622689 1_1:+4862164 Msa0002700:five_prime_UTR
TGGTGAAAGTTTGGCCCACG+TGG 0.626188 1_1:-4861507 None:intergenic
TTGGAGAAAAGTAACCGCAT+AGG 0.627390 1_1:-4864856 None:intergenic
CCAATGACATGGAGTCCACA+AGG 0.627709 1_1:-4865390 None:intergenic
GAGCGCACTACTAATAGTAA+GGG 0.627775 1_1:+4865634 Msa0002700:three_prime_UTR
ATGCTGCAAAACCATGATGA+GGG 0.628612 1_1:-4864888 None:intergenic
GAATTGATAGCTGTTGCCAA+TGG 0.630507 1_1:+4867769 Msa0002700:three_prime_UTR
TATGCTGCAAAACCATGATG+AGG 0.631679 1_1:-4864889 None:intergenic
ATAGCATGTTGAAGCTTGTG+AGG 0.631952 1_1:+4862469 Msa0002700:five_prime_UTR
TCTGAGCTAGTATAGAAGGG+AGG 0.635865 1_1:-4865494 None:intergenic
AAGTTCGAGAAGCCGCAACA+AGG 0.636456 1_1:+4866605 Msa0002700:three_prime_UTR
GCCTCCTGGGAATCTGAATG+CGG 0.636519 1_1:+4864750 Msa0002700:CDS
GTAATGACTGACATCAGTGA+GGG 0.638222 1_1:-4866854 None:intergenic
TGCTGCAAACAACCCTTCAG+AGG 0.638847 1_1:+4865065 Msa0002700:CDS
CATCCACAGAACCTGAGCAA+GGG 0.638930 1_1:-4866097 None:intergenic
AGTGGAGCAGCTTTGCACCA+GGG 0.638947 1_1:+4863732 Msa0002700:CDS
GTGTTCGGGAAATCGAGAAG+AGG 0.640018 1_1:+4867408 Msa0002700:three_prime_UTR
TAAACAATGCAATCTCGACA+AGG 0.641680 1_1:+4865263 Msa0002700:CDS
CATAGCTGCACTTGATCGTG+TGG 0.643552 1_1:+4865455 Msa0002700:CDS
TTGACATCATCATACATACA+AGG 0.653715 1_1:-4862711 None:intergenic
TCAGTTGTCTGGAAAACCAG+TGG 0.654285 1_1:-4863097 None:intergenic
TATGAAGGCATGTTATCTAG+TGG 0.654989 1_1:+4867377 Msa0002700:three_prime_UTR
TATCAGTCACTCAAGGACAC+TGG 0.659943 1_1:+4865201 Msa0002700:CDS
AGGCTACCATAGCCAAACGC+AGG 0.661038 1_1:+4865085 Msa0002700:CDS
TGGGTGGCTCACCAATGACA+TGG 0.661910 1_1:-4865401 None:intergenic
CAAGGATGTGGATTTGCCAG+AGG 0.666663 1_1:+4865281 Msa0002700:CDS
CTCGTCGTATCAGTCACTCA+AGG 0.667889 1_1:+4865194 Msa0002700:CDS
TTTGTAGAGCCAGGACCTGG+AGG 0.671079 1_1:+4865862 Msa0002700:three_prime_UTR
AATCCGATAGCTGATAACCT+CGG 0.674393 1_1:+4866129 Msa0002700:three_prime_UTR
CAAATAACCGAAGCATCACG+CGG 0.677542 1_1:+4865592 Msa0002700:three_prime_UTR
GCTACGAAGGTGATCCTATG+CGG 0.681192 1_1:+4864842 Msa0002700:CDS
AGTGTAGGAAGAAAACATAG+AGG 0.686839 1_1:+4865516 Msa0002700:CDS
TGCGGATGGAGAGAATCTGT+TGG 0.692344 1_1:+4864768 Msa0002700:CDS
GATAGCTGATAACCTCGGAA+GGG 0.693097 1_1:+4866134 Msa0002700:three_prime_UTR
GCATTGCCAGAGCTAGATGG+AGG 0.693777 1_1:+4863175 Msa0002700:CDS
GGAACAAGCTGAAGCCCTAG+GGG 0.694392 1_1:+4866579 Msa0002700:three_prime_UTR
ATTATGGAACTTGAGGCTAA+AGG 0.694800 1_1:+4862867 Msa0002700:five_prime_UTR
ACAGCATTAGAAGAAAATTG+GGG 0.696979 1_1:+4864724 Msa0002700:CDS
GAAAATGCAGGACTGTACAA+GGG 0.702354 1_1:+4865147 Msa0002700:CDS
AGTAATGACTGACATCAGTG+AGG 0.702723 1_1:-4866855 None:intergenic
TATGCCGAATCCAAGGATGG+AGG 0.719005 1_1:-4865686 None:intergenic
TCCGCATTCAGATTCCCAGG+AGG 0.735025 1_1:-4864751 None:intergenic
GCTGTAGTAGGAATAGATTG+TGG 0.740284 1_1:-4865943 None:intergenic
GAAAACGTTTAGGTACGCAG+CGG 0.758267 1_1:-4864515 None:intergenic
CAACAGCTATCAATTCAAGG+TGG 0.759637 1_1:-4867762 None:intergenic
ACAGTTGCCCTTGTACTGTG+GGG 0.790700 1_1:+4866045 Msa0002700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAGTCTAAAATTT+GGG + chr1_1:4861796-4861815 Msa0002700:five_prime_UTR 15.0%
!! AAATTCACTAATGTTTATTA+AGG + chr1_1:4863685-4863704 Msa0002700:intron 15.0%
!!! AATTTTTGTTTTTGTTATAG+AGG - chr1_1:4866342-4866361 None:intergenic 15.0%
!! GTTTACTTAGAAAAAAAATT+GGG + chr1_1:4867011-4867030 Msa0002700:intron 15.0%
!! TATAAAATTGGAAGATATAT+TGG - chr1_1:4867910-4867929 None:intergenic 15.0%
!! CATGTCTTTATATATAAAAT+TGG - chr1_1:4867922-4867941 None:intergenic 15.0%
!!! CAATTTTATATATAAAGACA+TGG + chr1_1:4867920-4867939 Msa0002700:three_prime_UTR 15.0%
!!! CAATTATGAATAGTTTTTTG+AGG - chr1_1:4861467-4861486 None:intergenic 20.0%
!!! CTTTTTTTCAGTCTAAAATT+TGG + chr1_1:4861795-4861814 Msa0002700:five_prime_UTR 20.0%
!!! TGTTTTTAGATAATGGAATT+TGG + chr1_1:4862676-4862695 Msa0002700:five_prime_UTR 20.0%
!! AAAAGCAACTTATAACTTAT+AGG + chr1_1:4863482-4863501 Msa0002700:intron 20.0%
!!! TCAGCTTTTAATAAAAGAAT+AGG - chr1_1:4863902-4863921 None:intergenic 20.0%
!!! TTTGTTGACATTTTATATTG+TGG + chr1_1:4864190-4864209 Msa0002700:intron 20.0%
!!! TTGTTGACATTTTATATTGT+GGG + chr1_1:4864191-4864210 Msa0002700:intron 20.0%
!!! ACAAGATGATTTTTAGATAT+TGG - chr1_1:4864286-4864305 None:intergenic 20.0%
!! ACAGATAATATTAAGACATA+TGG + chr1_1:4866069-4866088 Msa0002700:three_prime_UTR 20.0%
!! GATTCTGTTATTGTTTAAAA+AGG + chr1_1:4866283-4866302 Msa0002700:intron 20.0%
!! TTCAAAATTTAAGGAAAGAT+GGG + chr1_1:4866902-4866921 Msa0002700:three_prime_UTR 20.0%
!! CGTTTACTTAGAAAAAAAAT+TGG + chr1_1:4867010-4867029 Msa0002700:intron 20.0%
!!! TAATTTTTTGTTGACTTTCA+GGG + chr1_1:4867840-4867859 Msa0002700:three_prime_UTR 20.0%
!! AAGATGAAATCTCTATATAA+TGG - chr1_1:4867948-4867967 None:intergenic 20.0%
! ATAGTTTCTTCCAATGAAAA+CGG - chr1_1:4861546-4861565 None:intergenic 25.0%
! AAGCAAATTTGAAAGAACAA+AGG + chr1_1:4861684-4861703 Msa0002700:five_prime_UTR 25.0%
!! TTACAATAAAGAGCAAGTTT+TGG - chr1_1:4861755-4861774 None:intergenic 25.0%
! TTAGAATTTGGTAGAGTAAA+TGG - chr1_1:4861853-4861872 None:intergenic 25.0%
!!! AGTTGATCAACTTTAGAATT+TGG - chr1_1:4861865-4861884 None:intergenic 25.0%
!!! TTTTGAGTTACCATAGTAAT+TGG - chr1_1:4861941-4861960 None:intergenic 25.0%
! TTCTTGAAAAGCTGAAAAAA+AGG - chr1_1:4862420-4862439 None:intergenic 25.0%
! AAGAAATTCTGCAAATTATC+AGG - chr1_1:4862588-4862607 None:intergenic 25.0%
! AATTTCTTGAAGATGATTTC+TGG + chr1_1:4862600-4862619 Msa0002700:five_prime_UTR 25.0%
! CCATTATCTAAAAACAAAAC+AGG - chr1_1:4862672-4862691 None:intergenic 25.0%
!!! CCTGTTTTGTTTTTAGATAA+TGG + chr1_1:4862669-4862688 Msa0002700:five_prime_UTR 25.0%
!!! ATGTCAAAGAGTATTTGAAT+TGG + chr1_1:4862727-4862746 Msa0002700:five_prime_UTR 25.0%
!!! AAAGAGTATTTGAATTGGTA+TGG + chr1_1:4862732-4862751 Msa0002700:five_prime_UTR 25.0%
! ACAAATGGTTTCTTAGTAAT+AGG - chr1_1:4862962-4862981 None:intergenic 25.0%
! TTAATAGGGTATAAGGTAAA+AGG - chr1_1:4863298-4863317 None:intergenic 25.0%
!! TTTTACCTTATACCCTATTA+AGG + chr1_1:4863297-4863316 Msa0002700:intron 25.0%
!! TTAAGTTGTTTATGTGAACA+AGG + chr1_1:4863601-4863620 Msa0002700:intron 25.0%
! TAAGTTGTTTATGTGAACAA+GGG + chr1_1:4863602-4863621 Msa0002700:intron 25.0%
!! TGAGTTGAAAAGAAAAACAA+AGG + chr1_1:4863768-4863787 Msa0002700:CDS 25.0%
! TGAAGTCATATTATCTCTTA+AGG + chr1_1:4863812-4863831 Msa0002700:intron 25.0%
! ATATTATCTCTTAAGGTTGT+AGG + chr1_1:4863819-4863838 Msa0002700:intron 25.0%
! TATTATCTCTTAAGGTTGTA+GGG + chr1_1:4863820-4863839 Msa0002700:intron 25.0%
!!! ATATTTTGCTGTTCTTAATC+TGG - chr1_1:4864170-4864189 None:intergenic 25.0%
! CATCTTTCATGTAAATTCAT+AGG + chr1_1:4864251-4864270 Msa0002700:intron 25.0%
! TGTTGAAATTATCTTGATAC+AGG + chr1_1:4864432-4864451 Msa0002700:intron 25.0%
!!! TTCTTTTAGAACAGAGAAAA+TGG - chr1_1:4864545-4864564 None:intergenic 25.0%
!! CAATATGGTAATGTATTCAT+AGG + chr1_1:4864802-4864821 Msa0002700:CDS 25.0%
!!! AGAATTTTGTTTGAGTACTT+GGG + chr1_1:4865772-4865791 Msa0002700:three_prime_UTR 25.0%
! GAAAGGCAAAAAATTGATAA+TGG + chr1_1:4866006-4866025 Msa0002700:three_prime_UTR 25.0%
!! TTTGTTATAGAGGTTAAGTA+TGG - chr1_1:4866332-4866351 None:intergenic 25.0%
! AGAAACTATAATGATTGTTC+AGG + chr1_1:4866377-4866396 Msa0002700:intron 25.0%
! GAAACTATAATGATTGTTCA+GGG + chr1_1:4866378-4866397 Msa0002700:intron 25.0%
! ATGAAAATCTTGGAGTAATA+AGG - chr1_1:4866431-4866450 None:intergenic 25.0%
!! AAATTTTGAACAAGGTTAGT+GGG - chr1_1:4866892-4866911 None:intergenic 25.0%
!! TAAATTTTGAACAAGGTTAG+TGG - chr1_1:4866893-4866912 None:intergenic 25.0%
! CTAACCTTGTTCAAAATTTA+AGG + chr1_1:4866893-4866912 Msa0002700:three_prime_UTR 25.0%
!! CTTTCCTTAAATTTTGAACA+AGG - chr1_1:4866900-4866919 None:intergenic 25.0%
! GTTCAAAATTTAAGGAAAGA+TGG + chr1_1:4866901-4866920 Msa0002700:three_prime_UTR 25.0%
! GAAAGATCAAAATCCTAATA+AGG - chr1_1:4867193-4867212 None:intergenic 25.0%
! AAAATTACAACAGGGAAAAA+GGG - chr1_1:4867827-4867846 None:intergenic 25.0%
! AAAAATTACAACAGGGAAAA+AGG - chr1_1:4867828-4867847 None:intergenic 25.0%
! GTCAACAAAAAATTACAACA+GGG - chr1_1:4867835-4867854 None:intergenic 25.0%
! AGTCAACAAAAAATTACAAC+AGG - chr1_1:4867836-4867855 None:intergenic 25.0%
!!! GTAATTTTTTGTTGACTTTC+AGG + chr1_1:4867839-4867858 Msa0002700:three_prime_UTR 25.0%
!! ATATATTGGCTAAGTTTGTT+TGG - chr1_1:4867896-4867915 None:intergenic 25.0%
! TGTGGAGTTGAGTTTTTATT+TGG - chr1_1:4861587-4861606 None:intergenic 30.0%
TTTCTTCTTGTTCTTCTATG+TGG - chr1_1:4861605-4861624 None:intergenic 30.0%
!! AAATTTGGGTTGATGATCAA+TGG + chr1_1:4861810-4861829 Msa0002700:five_prime_UTR 30.0%
!!! AGTAATTGGTTTTCTTAGGA+AGG - chr1_1:4861927-4861946 None:intergenic 30.0%
!!! CCATAGTAATTGGTTTTCTT+AGG - chr1_1:4861931-4861950 None:intergenic 30.0%
CCTAAGAAAACCAATTACTA+TGG + chr1_1:4861928-4861947 Msa0002700:five_prime_UTR 30.0%
TGCATTGCATTTCAATCTAA+AGG - chr1_1:4861968-4861987 None:intergenic 30.0%
AGATTGAAATGCAATGCAAT+TGG + chr1_1:4861970-4861989 Msa0002700:five_prime_UTR 30.0%
AAATGCAATGCAATTGGTAA+TGG + chr1_1:4861976-4861995 Msa0002700:five_prime_UTR 30.0%
! ACATACACAATTTTCACTGT+TGG - chr1_1:4862063-4862082 None:intergenic 30.0%
GAAGATGCTAATATCTTCAT+TGG + chr1_1:4862231-4862250 Msa0002700:five_prime_UTR 30.0%
!!! TGGTTCATTGATTTTTGTTG+AGG + chr1_1:4862251-4862270 Msa0002700:five_prime_UTR 30.0%
! TCTTTTAGTATGTCACAACT+TGG + chr1_1:4862381-4862400 Msa0002700:five_prime_UTR 30.0%
GGTAAATACTTCAAAACCTT+AGG - chr1_1:4862501-4862520 None:intergenic 30.0%
! ATATCTTGAGTCTACAGTTT+TGG + chr1_1:4862550-4862569 Msa0002700:five_prime_UTR 30.0%
TTGACATCATCATACATACA+AGG - chr1_1:4862714-4862733 None:intergenic 30.0%
GATATCACAGAATTCACAAA+TGG - chr1_1:4862977-4862996 None:intergenic 30.0%
!! GTGATTGTTTTACCTGTTTT+GGG - chr1_1:4863232-4863251 None:intergenic 30.0%
!! AGTGATTGTTTTACCTGTTT+TGG - chr1_1:4863233-4863252 None:intergenic 30.0%
ACAATCCTTAATAGGGTATA+AGG - chr1_1:4863305-4863324 None:intergenic 30.0%
!!! GTTGCTTTTGTAAGTTATTC+AGG - chr1_1:4863471-4863490 None:intergenic 30.0%
TTGAAGCAGATATCTGATAT+TGG + chr1_1:4863860-4863879 Msa0002700:intron 30.0%
TGATACTACAAGTAATCTCT+AGG + chr1_1:4863962-4863981 Msa0002700:intron 30.0%
TTCCAATGTAGTAAAACCTT+AGG + chr1_1:4864348-4864367 Msa0002700:intron 30.0%
TCCAATGTAGTAAAACCTTA+GGG + chr1_1:4864349-4864368 Msa0002700:intron 30.0%
ACAACATAAGTGAAACTTCT+CGG - chr1_1:4864415-4864434 None:intergenic 30.0%
!!! TTTTAGAACAGAGAAAATGG+AGG - chr1_1:4864542-4864561 None:intergenic 30.0%
CTAAAAGAACTTCAAAGTGA+TGG + chr1_1:4864556-4864575 Msa0002700:CDS 30.0%
TGTAAGCAATGTTGAGATTT+GGG - chr1_1:4864663-4864682 None:intergenic 30.0%
TTGTAAGCAATGTTGAGATT+TGG - chr1_1:4864664-4864683 None:intergenic 30.0%
CACAGCATTAGAAGAAAATT+GGG + chr1_1:4864723-4864742 Msa0002700:CDS 30.0%
ACAGCATTAGAAGAAAATTG+GGG + chr1_1:4864724-4864743 Msa0002700:CDS 30.0%
TTGGTATATGGTAAGCAATA+TGG + chr1_1:4864787-4864806 Msa0002700:CDS 30.0%
TGTGAGTTCAATTATTAGCA+CGG + chr1_1:4865239-4865258 Msa0002700:CDS 30.0%
ATTTATAGAAGCAGTGACAA+AGG + chr1_1:4865541-4865560 Msa0002700:exon 30.0%
!! CAGAATTTTGTTTGAGTACT+TGG + chr1_1:4865771-4865790 Msa0002700:three_prime_UTR 30.0%
! AATTGTAGCTGATAATGAAG+TGG + chr1_1:4865810-4865829 Msa0002700:three_prime_UTR 30.0%
! ATTGTAGCTGATAATGAAGT+GGG + chr1_1:4865811-4865830 Msa0002700:three_prime_UTR 30.0%
!! AAAACTTTAGGGTTTCTGAT+CGG - chr1_1:4865892-4865911 None:intergenic 30.0%
! TTCCTGTTGGTAAAACTTTA+GGG - chr1_1:4865903-4865922 None:intergenic 30.0%
! TTTCCTGTTGGTAAAACTTT+AGG - chr1_1:4865904-4865923 None:intergenic 30.0%
!! AGGCAAAAAATTGATAATGG+AGG + chr1_1:4866009-4866028 Msa0002700:three_prime_UTR 30.0%
CAATAACAGAATCCAAACAA+CGG - chr1_1:4866276-4866295 None:intergenic 30.0%
ACAGACAGATATGAAAATCT+TGG - chr1_1:4866441-4866460 None:intergenic 30.0%
! AAAAAGACAAGTCTTTGAGA+TGG + chr1_1:4866780-4866799 Msa0002700:three_prime_UTR 30.0%
! AATTTTGAACAAGGTTAGTG+GGG - chr1_1:4866891-4866910 None:intergenic 30.0%
! TCACATAACAACTTTTACCT+GGG - chr1_1:4866971-4866990 None:intergenic 30.0%
! TTCACATAACAACTTTTACC+TGG - chr1_1:4866972-4866991 None:intergenic 30.0%
ATTGATTAAAGTGACACTGA+TGG + chr1_1:4867049-4867068 Msa0002700:intron 30.0%
TTGACATTGCAAAACCTAAA+GGG - chr1_1:4867113-4867132 None:intergenic 30.0%
TTTGACATTGCAAAACCTAA+AGG - chr1_1:4867114-4867133 None:intergenic 30.0%
!!! AGTTTTTTCGTTTGACCTTA+TGG + chr1_1:4867273-4867292 Msa0002700:intron 30.0%
AAAGGAACAATATCTCCATA+AGG - chr1_1:4867291-4867310 None:intergenic 30.0%
ATGTTATCTAGTGGTTATGA+GGG + chr1_1:4867386-4867405 Msa0002700:three_prime_UTR 30.0%
AAGAAAACATTGAGAAGTTG+AGG + chr1_1:4867621-4867640 Msa0002700:three_prime_UTR 30.0%
GAAGTGGAAGATAAAATTGA+AGG + chr1_1:4867656-4867675 Msa0002700:three_prime_UTR 30.0%
!! TACCTTATTTCTCTGAAACT+TGG + chr1_1:4867736-4867755 Msa0002700:three_prime_UTR 30.0%
AACCAAGTTTCAGAGAAATA+AGG - chr1_1:4867741-4867760 None:intergenic 30.0%
TACATTAACAATGATGCCAT+TGG - chr1_1:4867788-4867807 None:intergenic 30.0%
AAATTACAACAGGGAAAAAG+GGG - chr1_1:4867826-4867845 None:intergenic 30.0%
TATGGTTAGTGGTGAAAGTT+TGG - chr1_1:4861519-4861538 None:intergenic 35.0%
AAAACGGTTTCTATGGTTAG+TGG - chr1_1:4861530-4861549 None:intergenic 35.0%
! ACCATAGAAACCGTTTTCAT+TGG + chr1_1:4861533-4861552 Msa0002700:five_prime_UTR 35.0%
TCCAATGAAAACGGTTTCTA+TGG - chr1_1:4861537-4861556 None:intergenic 35.0%
TGAGAAACACAACTCAACTT+TGG + chr1_1:4861659-4861678 Msa0002700:five_prime_UTR 35.0%
!! TTTTGGTTATGAGGGAAAGA+TGG - chr1_1:4861738-4861757 None:intergenic 35.0%
!!! AGAGCAAGTTTTGGTTATGA+GGG - chr1_1:4861746-4861765 None:intergenic 35.0%
!!! AAGAGCAAGTTTTGGTTATG+AGG - chr1_1:4861747-4861766 None:intergenic 35.0%
!! GGTAAGTTTTGCTTGTTTTC+TGG - chr1_1:4862042-4862061 None:intergenic 35.0%
!!! GATGCTTCTTTTGAAGTTGT+CGG + chr1_1:4862150-4862169 Msa0002700:five_prime_UTR 35.0%
GTGATGAGGTTGAACAAATT+GGG + chr1_1:4862357-4862376 Msa0002700:five_prime_UTR 35.0%
AAGAAGAATACTTCTTCAGC+TGG + chr1_1:4862438-4862457 Msa0002700:five_prime_UTR 35.0%
! TCTTATGTTCCAGCATTGAA+AGG + chr1_1:4862624-4862643 Msa0002700:five_prime_UTR 35.0%
ATCTTTGTACCTTTCAATGC+TGG - chr1_1:4862636-4862655 None:intergenic 35.0%
! AGCATTGAAAGGTACAAAGA+TGG + chr1_1:4862635-4862654 Msa0002700:five_prime_UTR 35.0%
! CATACATACAAGGTGCTAAA+GGG - chr1_1:4862704-4862723 None:intergenic 35.0%
! TCATACATACAAGGTGCTAA+AGG - chr1_1:4862705-4862724 None:intergenic 35.0%
TGAATTGGTATGGAACTAGA+AGG + chr1_1:4862742-4862761 Msa0002700:five_prime_UTR 35.0%
GAATTGGTATGGAACTAGAA+GGG + chr1_1:4862743-4862762 Msa0002700:five_prime_UTR 35.0%
!!! TTGTTGGTTTGGTTTTGCAA+AGG + chr1_1:4862802-4862821 Msa0002700:five_prime_UTR 35.0%
CAAAGGAGTCATATTGTTAC+TGG + chr1_1:4862819-4862838 Msa0002700:five_prime_UTR 35.0%
! CATATTGTTACTGGTGATGA+TGG + chr1_1:4862828-4862847 Msa0002700:five_prime_UTR 35.0%
TCATTACGTTGCTGTGATTA+TGG + chr1_1:4862851-4862870 Msa0002700:five_prime_UTR 35.0%
ATTATGGAACTTGAGGCTAA+AGG + chr1_1:4862867-4862886 Msa0002700:five_prime_UTR 35.0%
! AAGGTTATTCCAATTTTCGC+CGG + chr1_1:4862894-4862913 Msa0002700:five_prime_UTR 35.0%
TCAATGAAGAACTTCTCAAC+CGG - chr1_1:4862938-4862957 None:intergenic 35.0%
AATTCTGTGATATCTCTCAC+TGG + chr1_1:4862983-4863002 Msa0002700:five_prime_UTR 35.0%
AGTGGCAAAGCAACAATATA+AGG - chr1_1:4863082-4863101 None:intergenic 35.0%
!! TTATATTGTTGCTTTGCCAC+TGG + chr1_1:4863081-4863100 Msa0002700:CDS 35.0%
AGAGTGGTTGAATAGTACTT+TGG + chr1_1:4863120-4863139 Msa0002700:CDS 35.0%
GAGTGGTTGAATAGTACTTT+GGG + chr1_1:4863121-4863140 Msa0002700:CDS 35.0%
ACTTGAAGAGCAACTTGAAT+TGG - chr1_1:4863154-4863173 None:intergenic 35.0%
TGCAAGGACAATCCTTAATA+GGG - chr1_1:4863312-4863331 None:intergenic 35.0%
TTGCAAGGACAATCCTTAAT+AGG - chr1_1:4863313-4863332 None:intergenic 35.0%
TTGTCCTTGCAAATACTCTT+AGG + chr1_1:4863321-4863340 Msa0002700:intron 35.0%
TGTCCTTGCAAATACTCTTA+GGG + chr1_1:4863322-4863341 Msa0002700:intron 35.0%
!!! TAACACTTCTGAGACTGTTT+TGG + chr1_1:4863381-4863400 Msa0002700:intron 35.0%
TGACTTCAAGAAGCGAAATA+TGG - chr1_1:4863800-4863819 None:intergenic 35.0%
!! GATATTGACTTTGAGCTGAA+TGG + chr1_1:4864069-4864088 Msa0002700:intron 35.0%
TAATCTGGACAAAAGAAACG+AGG - chr1_1:4864155-4864174 None:intergenic 35.0%
ATTGGAAAAACATGTAGTGC+AGG - chr1_1:4864335-4864354 None:intergenic 35.0%
! ACCCTAAGGTTTTACTACAT+TGG - chr1_1:4864353-4864372 None:intergenic 35.0%
AAATGGAGGAGAAAACGTTT+AGG - chr1_1:4864528-4864547 None:intergenic 35.0%
AGTGATGGTTACAATGTTGA+AGG + chr1_1:4864571-4864590 Msa0002700:CDS 35.0%
!! AATCAATGCTTCTGAAGTCT+CGG - chr1_1:4864602-4864621 None:intergenic 35.0%
! CCAATTTTCTTCTAATGCTG+TGG - chr1_1:4864725-4864744 None:intergenic 35.0%
CCACAGCATTAGAAGAAAAT+TGG + chr1_1:4864722-4864741 Msa0002700:CDS 35.0%
ATAGGTGTTCAACCTACATT+TGG + chr1_1:4864820-4864839 Msa0002700:CDS 35.0%
GCAGCATAGTAATAGACATT+TGG - chr1_1:4865051-4865070 None:intergenic 35.0%
TAAACAATGCAATCTCGACA+AGG + chr1_1:4865263-4865282 Msa0002700:CDS 35.0%
AGTGTAGGAAGAAAACATAG+AGG + chr1_1:4865516-4865535 Msa0002700:CDS 35.0%
!! CAGTGACAAAGGAGTATTAA+AGG + chr1_1:4865552-4865571 Msa0002700:three_prime_UTR 35.0%
TAAAGGATGTAGAGCTTCTT+CGG + chr1_1:4865569-4865588 Msa0002700:three_prime_UTR 35.0%
AATAAACTTACCTCCATCCT+TGG + chr1_1:4865676-4865695 Msa0002700:three_prime_UTR 35.0%
! CAAATTTTACCGAGGTGATA+GGG + chr1_1:4865741-4865760 Msa0002700:three_prime_UTR 35.0%
! AGTTTAAAACAAGCCTTGGA+AGG + chr1_1:4865835-4865854 Msa0002700:three_prime_UTR 35.0%
CTCTACAAATTTACCTTCCA+AGG - chr1_1:4865851-4865870 None:intergenic 35.0%
!! AAACTTTAGGGTTTCTGATC+GGG - chr1_1:4865891-4865910 None:intergenic 35.0%
! AACCCTAAAGTTTTACCAAC+AGG + chr1_1:4865898-4865917 Msa0002700:three_prime_UTR 35.0%
GCATGAATATTCTTTCCTGT+TGG - chr1_1:4865916-4865935 None:intergenic 35.0%
! CAATCTCTCTACCACTATTT+TGG - chr1_1:4865983-4866002 None:intergenic 35.0%
CTGATACCTGATTGATGAAA+AGG - chr1_1:4866245-4866264 None:intergenic 35.0%
TCTTCTTCAGATGAATCTTC+TGG + chr1_1:4866486-4866505 Msa0002700:intron 35.0%
AAGCAAAAGACTTTCTGCTA+AGG - chr1_1:4866726-4866745 None:intergenic 35.0%
TTTCCAAAACCTTGACTCAT+CGG + chr1_1:4866825-4866844 Msa0002700:three_prime_UTR 35.0%
GTATCAGCAATATATGCACT+TGG - chr1_1:4866934-4866953 None:intergenic 35.0%
GATTTGAATTTCACCCCTTT+AGG + chr1_1:4867096-4867115 Msa0002700:intron 35.0%
TGACATTGCAAAACCTAAAG+GGG - chr1_1:4867112-4867131 None:intergenic 35.0%
ACACAAGTGACATCCTTATT+AGG + chr1_1:4867177-4867196 Msa0002700:intron 35.0%
ATGGAGATATTGTTCCTTTC+AGG + chr1_1:4867292-4867311 Msa0002700:intron 35.0%
AACATGCCTTCATACCATTT+GGG - chr1_1:4867371-4867390 None:intergenic 35.0%
TAACATGCCTTCATACCATT+TGG - chr1_1:4867372-4867391 None:intergenic 35.0%
! TATGAAGGCATGTTATCTAG+TGG + chr1_1:4867377-4867396 Msa0002700:three_prime_UTR 35.0%
CATGTTATCTAGTGGTTATG+AGG + chr1_1:4867385-4867404 Msa0002700:three_prime_UTR 35.0%
! TTCTGGACAAGTTGACAATT+GGG + chr1_1:4867460-4867479 Msa0002700:three_prime_UTR 35.0%
GTCTTGAATGAATGTTGTGT+TGG - chr1_1:4867498-4867517 None:intergenic 35.0%
ACGTGGCAAAATGTAGTCAT+TGG - chr1_1:4861493-4861512 None:intergenic 40.0%
! AATGACTACATTTTGCCACG+TGG + chr1_1:4861492-4861511 Msa0002700:five_prime_UTR 40.0%
! ATGACTACATTTTGCCACGT+GGG + chr1_1:4861493-4861512 Msa0002700:five_prime_UTR 40.0%
TGAGGGAAAGATGGTATTTG+AGG - chr1_1:4861729-4861748 None:intergenic 40.0%
AACGTACGAAACATTCTGCA+AGG + chr1_1:4862203-4862222 Msa0002700:five_prime_UTR 40.0%
AAGCTGCTGTTGAGAAAGAA+AGG + chr1_1:4862292-4862311 Msa0002700:five_prime_UTR 40.0%
AGCTGCTGTTGAGAAAGAAA+GGG + chr1_1:4862293-4862312 Msa0002700:five_prime_UTR 40.0%
GGTGATGAGGTTGAACAAAT+TGG + chr1_1:4862356-4862375 Msa0002700:five_prime_UTR 40.0%
ATAGCATGTTGAAGCTTGTG+AGG + chr1_1:4862469-4862488 Msa0002700:five_prime_UTR 40.0%
! GCATCTTGAGCTTTATCACT+TGG - chr1_1:4862522-4862541 None:intergenic 40.0%
GTGATAAAGCTCAAGATGCT+AGG + chr1_1:4862523-4862542 Msa0002700:five_prime_UTR 40.0%
!!! TTGAGTCTACAGTTTTGGCT+TGG + chr1_1:4862555-4862574 Msa0002700:five_prime_UTR 40.0%
AGTTCAAATGCACCTGTTGT+TGG + chr1_1:4862786-4862805 Msa0002700:five_prime_UTR 40.0%
! AAATGCACCTGTTGTTGGTT+TGG + chr1_1:4862791-4862810 Msa0002700:five_prime_UTR 40.0%
TGCAAAACCAAACCAACAAC+AGG - chr1_1:4862801-4862820 None:intergenic 40.0%
TGCTGTGATTATGGAACTTG+AGG + chr1_1:4862860-4862879 Msa0002700:five_prime_UTR 40.0%
! TTATTCCAATTTTCGCCGGA+GGG + chr1_1:4862898-4862917 Msa0002700:five_prime_UTR 40.0%
ATCAAAGCTTCAATAGCCCT+TGG - chr1_1:4863046-4863065 None:intergenic 40.0%
! TTTTCCAGACAACTGAAGAG+TGG + chr1_1:4863104-4863123 Msa0002700:CDS 40.0%
!! AGACCCTAAGAGTATTTGCA+AGG - chr1_1:4863328-4863347 None:intergenic 40.0%
GAACGAAGAGGAGAGAAAAA+AGG - chr1_1:4863643-4863662 None:intergenic 40.0%
!! AGGTGTTGAACTCTGTTGTT+TGG + chr1_1:4863982-4864001 Msa0002700:intron 40.0%
GTTCCTACATTTCCTTTGTC+TGG - chr1_1:4864496-4864515 None:intergenic 40.0%
!! ATCAATGCTTCTGAAGTCTC+GGG - chr1_1:4864601-4864620 None:intergenic 40.0%
TCTTCTAATGCTGTGGCATA+GGG - chr1_1:4864718-4864737 None:intergenic 40.0%
TTCTTCTAATGCTGTGGCAT+AGG - chr1_1:4864719-4864738 None:intergenic 40.0%
GGAGAGAATCTGTTGGTATA+TGG + chr1_1:4864775-4864794 Msa0002700:CDS 40.0%
TTGGAGAAAAGTAACCGCAT+AGG - chr1_1:4864859-4864878 None:intergenic 40.0%
ATGCTGCAAAACCATGATGA+GGG - chr1_1:4864891-4864910 None:intergenic 40.0%
TATGCTGCAAAACCATGATG+AGG - chr1_1:4864892-4864911 None:intergenic 40.0%
GCTGATGCTGTTCTTCATTT+CGG + chr1_1:4864940-4864959 Msa0002700:CDS 40.0%
CTTTCCAGGCATGAATTCAA+GGG - chr1_1:4864977-4864996 None:intergenic 40.0%
AATATTCCCGATCAGACTGT+CGG - chr1_1:4865028-4865047 None:intergenic 40.0%
TGGAGGAGTAAGATAGCTTA+TGG - chr1_1:4865124-4865143 None:intergenic 40.0%
! CTTGTACAGTCCTGCATTTT+CGG - chr1_1:4865148-4865167 None:intergenic 40.0%
GAAAATGCAGGACTGTACAA+GGG + chr1_1:4865147-4865166 Msa0002700:CDS 40.0%
!! AACTCACAATTTGTTGACCG+CGG - chr1_1:4865227-4865246 None:intergenic 40.0%
ACAAGATCTCGCTCTTTAGT+GGG - chr1_1:4865321-4865340 None:intergenic 40.0%
AACAAGATCTCGCTCTTTAG+TGG - chr1_1:4865322-4865341 None:intergenic 40.0%
! AAAGAGCGAGATCTTGTTGT+TGG + chr1_1:4865324-4865343 Msa0002700:CDS 40.0%
!! AAGAGCGAGATCTTGTTGTT+GGG + chr1_1:4865325-4865344 Msa0002700:CDS 40.0%
! GAAGGTGTATGCTAAGATCA+TGG + chr1_1:4865347-4865366 Msa0002700:CDS 40.0%
CACTCTGAGCTAGTATAGAA+GGG - chr1_1:4865500-4865519 None:intergenic 40.0%
ACACTCTGAGCTAGTATAGA+AGG - chr1_1:4865501-4865520 None:intergenic 40.0%
TCTATACTAGCTCAGAGTGT+AGG + chr1_1:4865501-4865520 Msa0002700:CDS 40.0%
ATTAGTAGTGCGCTCTACAA+AGG - chr1_1:4865629-4865648 None:intergenic 40.0%
AGAGCGCACTACTAATAGTA+AGG + chr1_1:4865633-4865652 Msa0002700:three_prime_UTR 40.0%
GAGCGCACTACTAATAGTAA+GGG + chr1_1:4865634-4865653 Msa0002700:three_prime_UTR 40.0%
! TCGGATACCAAATTTTACCG+AGG + chr1_1:4865733-4865752 Msa0002700:three_prime_UTR 40.0%
CCTATCACCTCGGTAAAATT+TGG - chr1_1:4865743-4865762 None:intergenic 40.0%
! CCAAATTTTACCGAGGTGAT+AGG + chr1_1:4865740-4865759 Msa0002700:three_prime_UTR 40.0%
AGTACTTGGGAGAATGTTTG+AGG + chr1_1:4865785-4865804 Msa0002700:three_prime_UTR 40.0%
! GGGAAGTTTAAAACAAGCCT+TGG + chr1_1:4865831-4865850 Msa0002700:three_prime_UTR 40.0%
GAAGGTAAATTTGTAGAGCC+AGG + chr1_1:4865853-4865872 Msa0002700:three_prime_UTR 40.0%
AGGAAAGAATATTCATGCCC+TGG + chr1_1:4865918-4865937 Msa0002700:three_prime_UTR 40.0%
AGGAATAGATTGTGGATCCA+GGG - chr1_1:4865938-4865957 None:intergenic 40.0%
TAGGAATAGATTGTGGATCC+AGG - chr1_1:4865939-4865958 None:intergenic 40.0%
GCTGTAGTAGGAATAGATTG+TGG - chr1_1:4865946-4865965 None:intergenic 40.0%
TATTCCTACTACAGCAGCAA+TGG + chr1_1:4865951-4865970 Msa0002700:three_prime_UTR 40.0%
!! AATGGAGAGTGCCAAAATAG+TGG + chr1_1:4865969-4865988 Msa0002700:three_prime_UTR 40.0%
TGGTAGAGAGATTGCTTGAA+AGG + chr1_1:4865989-4866008 Msa0002700:three_prime_UTR 40.0%
AATCCGATAGCTGATAACCT+CGG + chr1_1:4866129-4866148 Msa0002700:three_prime_UTR 40.0%
! CAGAGACCTTTTCATCAATC+AGG + chr1_1:4866236-4866255 Msa0002700:three_prime_UTR 40.0%
TCAGTTATCACACCGTTGTT+TGG + chr1_1:4866261-4866280 Msa0002700:intron 40.0%
CTTACATAGTTCATCTCTGC+TGG - chr1_1:4866547-4866566 None:intergenic 40.0%
CAGCAGAGATGAACTATGTA+AGG + chr1_1:4866545-4866564 Msa0002700:three_prime_UTR 40.0%
! CTATGTAAGGAAGCATGCAA+TGG + chr1_1:4866558-4866577 Msa0002700:three_prime_UTR 40.0%
ATTGGAGAAGATCCTTGTTG+CGG - chr1_1:4866620-4866639 None:intergenic 40.0%
CAGGTTTATGTTTGAGGAGT+AGG - chr1_1:4866653-4866672 None:intergenic 40.0%
CTACTCCTCAAACATAAACC+TGG + chr1_1:4866651-4866670 Msa0002700:three_prime_UTR 40.0%
TTCTGCTAAGGTACATGTCT+TGG - chr1_1:4866714-4866733 None:intergenic 40.0%
!!! TGAGTCAAGGTTTTGGAAAG+TGG - chr1_1:4866824-4866843 None:intergenic 40.0%
! TTTCCGATGAGTCAAGGTTT+TGG - chr1_1:4866831-4866850 None:intergenic 40.0%
GTAATGACTGACATCAGTGA+GGG - chr1_1:4866857-4866876 None:intergenic 40.0%
AGTAATGACTGACATCAGTG+AGG - chr1_1:4866858-4866877 None:intergenic 40.0%
! AACAACTTTTACCTGGGCAT+TGG - chr1_1:4866965-4866984 None:intergenic 40.0%
! TCATTTTATAACCATCCCCG+AGG + chr1_1:4867072-4867091 Msa0002700:intron 40.0%
GTGAAATTCAAATCTCCTCG+GGG - chr1_1:4867090-4867109 None:intergenic 40.0%
GGTGAAATTCAAATCTCCTC+GGG - chr1_1:4867091-4867110 None:intergenic 40.0%
GGGTGAAATTCAAATCTCCT+CGG - chr1_1:4867092-4867111 None:intergenic 40.0%
! AAGTCGAACTGTCTCTGAAA+GGG - chr1_1:4867324-4867343 None:intergenic 40.0%
TTGAACCCCAAATGGTATGA+AGG + chr1_1:4867362-4867381 Msa0002700:three_prime_UTR 40.0%
ACATGCCTTCATACCATTTG+GGG - chr1_1:4867370-4867389 None:intergenic 40.0%
AAGAGGCTTACTAACACAGT+TGG + chr1_1:4867425-4867444 Msa0002700:three_prime_UTR 40.0%
! CTTCTGGACAAGTTGACAAT+TGG + chr1_1:4867459-4867478 Msa0002700:three_prime_UTR 40.0%
CACAACATTCATTCAAGACG+AGG + chr1_1:4867499-4867518 Msa0002700:three_prime_UTR 40.0%
CAAACATTCTTGGAAGCCAA+TGG + chr1_1:4867575-4867594 Msa0002700:three_prime_UTR 40.0%
CAACAGCTATCAATTCAAGG+TGG - chr1_1:4867765-4867784 None:intergenic 40.0%
TGGCAACAGCTATCAATTCA+AGG - chr1_1:4867768-4867787 None:intergenic 40.0%
! GAATTGATAGCTGTTGCCAA+TGG + chr1_1:4867769-4867788 Msa0002700:three_prime_UTR 40.0%
GCATTTGCAACTGCACAAAA+AGG - chr1_1:4867874-4867893 None:intergenic 40.0%
! AGTTGTCGGTTACTTAGTCG+AGG + chr1_1:4862164-4862183 Msa0002700:five_prime_UTR 45.0%
CTGTTGAGAAAGAAAGGGAC+AGG + chr1_1:4862298-4862317 Msa0002700:five_prime_UTR 45.0%
TGAGAAAGAAAGGGACAGGA+TGG + chr1_1:4862302-4862321 Msa0002700:five_prime_UTR 45.0%
TTGTTCAACCTCATCACCTC+AGG - chr1_1:4862354-4862373 None:intergenic 45.0%
!!! AGTCTACAGTTTTGGCTTGG+TGG + chr1_1:4862558-4862577 Msa0002700:five_prime_UTR 45.0%
!!! GTCTACAGTTTTGGCTTGGT+GGG + chr1_1:4862559-4862578 Msa0002700:five_prime_UTR 45.0%
!! ACTTGAGGCTAAAGGTGCTA+AGG + chr1_1:4862875-4862894 Msa0002700:five_prime_UTR 45.0%
! GTTATTCCAATTTTCGCCGG+AGG + chr1_1:4862897-4862916 Msa0002700:five_prime_UTR 45.0%
! CTCACTGGATTTGCTCTTGT+TGG + chr1_1:4862998-4863017 Msa0002700:five_prime_UTR 45.0%
! ACTGGATTTGCTCTTGTTGG+AGG + chr1_1:4863001-4863020 Msa0002700:five_prime_UTR 45.0%
! CTGGATTTGCTCTTGTTGGA+GGG + chr1_1:4863002-4863021 Msa0002700:five_prime_UTR 45.0%
TGCTAGACAGGATCATCCAA+GGG + chr1_1:4863027-4863046 Msa0002700:five_prime_UTR 45.0%
TCAGTTGTCTGGAAAACCAG+TGG - chr1_1:4863100-4863119 None:intergenic 45.0%
TCAACCACTCTTCAGTTGTC+TGG - chr1_1:4863111-4863130 None:intergenic 45.0%
GCAAGCAAGAATGAACGAAG+AGG - chr1_1:4863655-4863674 None:intergenic 45.0%
TTCACATGAAGACGACCCTA+AGG - chr1_1:4864367-4864386 None:intergenic 45.0%
CTACATTTCCTTTGTCTGGC+GGG - chr1_1:4864492-4864511 None:intergenic 45.0%
CCTACATTTCCTTTGTCTGG+CGG - chr1_1:4864493-4864512 None:intergenic 45.0%
GAAAACGTTTAGGTACGCAG+CGG - chr1_1:4864518-4864537 None:intergenic 45.0%
GAGTGAGAGCTTGGTATTCA+CGG - chr1_1:4864696-4864715 None:intergenic 45.0%
AAAATTGGGGAAAGCCTCCT+GGG + chr1_1:4864737-4864756 Msa0002700:CDS 45.0%
CAACCTACATTTGGCTACGA+AGG + chr1_1:4864829-4864848 Msa0002700:CDS 45.0%
TCACCTTCGTAGCCAAATGT+AGG - chr1_1:4864835-4864854 None:intergenic 45.0%
ATGATGAGGGCTTGCAGATT+TGG - chr1_1:4864878-4864897 None:intergenic 45.0%
AAATCTGCAAGCCCTCATCA+TGG + chr1_1:4864877-4864896 Msa0002700:CDS 45.0%
GTTCTTCATTTCGGCACACA+CGG + chr1_1:4864949-4864968 Msa0002700:CDS 45.0%
GCTTTCCAGGCATGAATTCA+AGG - chr1_1:4864978-4864997 None:intergenic 45.0%
TGAATTCATGCCTGGAAAGC+AGG + chr1_1:4864978-4864997 Msa0002700:CDS 45.0%
TGTTATCCCGACAGTCTGAT+CGG + chr1_1:4865018-4865037 Msa0002700:CDS 45.0%
ATATTCCCGATCAGACTGTC+GGG - chr1_1:4865027-4865046 None:intergenic 45.0%
CGAAAATGCAGGACTGTACA+AGG + chr1_1:4865146-4865165 Msa0002700:CDS 45.0%
TATCAGTCACTCAAGGACAC+TGG + chr1_1:4865201-4865220 Msa0002700:CDS 45.0%
ATGCAATCTCGACAAGGATG+TGG + chr1_1:4865269-4865288 Msa0002700:CDS 45.0%
CTGAGCTAGTATAGAAGGGA+GGG - chr1_1:4865496-4865515 None:intergenic 45.0%
TCTGAGCTAGTATAGAAGGG+AGG - chr1_1:4865497-4865516 None:intergenic 45.0%
! CAAATAACCGAAGCATCACG+CGG + chr1_1:4865592-4865611 Msa0002700:three_prime_UTR 45.0%
CTTACCTCCATCCTTGGATT+CGG + chr1_1:4865682-4865701 Msa0002700:three_prime_UTR 45.0%
GTTTATGCCGAATCCAAGGA+TGG - chr1_1:4865692-4865711 None:intergenic 45.0%
GCCATGGATTCAGTACTTGT+CGG + chr1_1:4865714-4865733 Msa0002700:three_prime_UTR 45.0%
!! TCCGACAAGTACTGAATCCA+TGG - chr1_1:4865718-4865737 None:intergenic 45.0%
! TGAGCTTTTCCCTATCACCT+CGG - chr1_1:4865753-4865772 None:intergenic 45.0%
AAATTTGTAGAGCCAGGACC+TGG + chr1_1:4865859-4865878 Msa0002700:three_prime_UTR 45.0%
ATCTGTTCCCCACAGTACAA+GGG - chr1_1:4866055-4866074 None:intergenic 45.0%
TATCTGTTCCCCACAGTACA+AGG - chr1_1:4866056-4866075 None:intergenic 45.0%
ATATGGAGAATCCCTTGCTC+AGG + chr1_1:4866086-4866105 Msa0002700:three_prime_UTR 45.0%
CTTCCGAGGTTATCAGCTAT+CGG - chr1_1:4866135-4866154 None:intergenic 45.0%
GATAGCTGATAACCTCGGAA+GGG + chr1_1:4866134-4866153 Msa0002700:three_prime_UTR 45.0%
CAAGGCTTACAGGTTCTACA+CGG - chr1_1:4866164-4866183 None:intergenic 45.0%
TAGGTCTTCCAAGCTCTTCA+AGG - chr1_1:4866182-4866201 None:intergenic 45.0%
TTGAAGAGCTTGGAAGACCT+AGG + chr1_1:4866181-4866200 Msa0002700:three_prime_UTR 45.0%
TGAAGAGCTTGGAAGACCTA+GGG + chr1_1:4866182-4866201 Msa0002700:three_prime_UTR 45.0%
TCTGGATAGAGCAGTGAAGA+TGG + chr1_1:4866504-4866523 Msa0002700:three_prime_UTR 45.0%
!! CTCTGCTGGTTCGTCTAATT+CGG - chr1_1:4866533-4866552 None:intergenic 45.0%
TTCTCGAACTTCAACCCCTA+GGG - chr1_1:4866596-4866615 None:intergenic 45.0%
CACAGCCAGGTTTATGTTTG+AGG - chr1_1:4866659-4866678 None:intergenic 45.0%
CTCAAACATAAACCTGGCTG+TGG + chr1_1:4866657-4866676 Msa0002700:three_prime_UTR 45.0%
ATGAAGAATTCTCCACAGCC+AGG - chr1_1:4866672-4866691 None:intergenic 45.0%
TGGCTGTGGAGAATTCTTCA+TGG + chr1_1:4866671-4866690 Msa0002700:three_prime_UTR 45.0%
!! GCTTTTGATTGTGATGCTCC+TGG + chr1_1:4866742-4866761 Msa0002700:three_prime_UTR 45.0%
AATTCAAATCTCCTCGGGGA+TGG - chr1_1:4867086-4867105 None:intergenic 45.0%
CCAGAACACAGAGTCTATGT+AGG - chr1_1:4867238-4867257 None:intergenic 45.0%
CCTACATAGACTCTGTGTTC+TGG + chr1_1:4867235-4867254 Msa0002700:intron 45.0%
CAAGTCGAACTGTCTCTGAA+AGG - chr1_1:4867325-4867344 None:intergenic 45.0%
!! CTAGTGGTTATGAGGGTGTT+CGG + chr1_1:4867393-4867412 Msa0002700:three_prime_UTR 45.0%
!! TAGTGGTTATGAGGGTGTTC+GGG + chr1_1:4867394-4867413 Msa0002700:three_prime_UTR 45.0%
GGCTTACTAACACAGTTGGA+TGG + chr1_1:4867429-4867448 Msa0002700:three_prime_UTR 45.0%
GAAGCTGGTGCAAACATTCT+TGG + chr1_1:4867565-4867584 Msa0002700:three_prime_UTR 45.0%
ACAACAGGGAAAAAGGGGAA+AGG - chr1_1:4867821-4867840 None:intergenic 45.0%
CAGCTGCTGAGACTGATGAT+TGG - chr1_1:4862104-4862123 None:intergenic 50.0%
! GGACAGGATGGATGCAGTTT+TGG + chr1_1:4862314-4862333 Msa0002700:five_prime_UTR 50.0%
GGTGTTTCCATCAATGCCTG+AGG + chr1_1:4862335-4862354 Msa0002700:five_prime_UTR 50.0%
!! CTCATCACCTCAGGCATTGA+TGG - chr1_1:4862345-4862364 None:intergenic 50.0%
CATCAATGCCTGAGGTGATG+AGG + chr1_1:4862343-4862362 Msa0002700:five_prime_UTR 50.0%
GCTTGTGAGGACTTTGCCTA+AGG + chr1_1:4862482-4862501 Msa0002700:five_prime_UTR 50.0%
CTTGGATGATCCTGTCTAGC+AGG - chr1_1:4863028-4863047 None:intergenic 50.0%
CTGCTAGACAGGATCATCCA+AGG + chr1_1:4863026-4863045 Msa0002700:five_prime_UTR 50.0%
GTTGCATTGCCAGAGCTAGA+TGG + chr1_1:4863172-4863191 Msa0002700:CDS 50.0%
! TCCATTCCTCCATCTAGCTC+TGG - chr1_1:4863184-4863203 None:intergenic 50.0%
! ATGGAGCCGATAGTTTTCGC+TGG + chr1_1:4863199-4863218 Msa0002700:CDS 50.0%
! AGCCGATAGTTTTCGCTGGT+CGG + chr1_1:4863203-4863222 Msa0002700:CDS 50.0%
TCCCGACCAGCGAAAACTAT+CGG - chr1_1:4863208-4863227 None:intergenic 50.0%
TCACGCTCTTCACAAGAGAG+TGG + chr1_1:4863714-4863733 Msa0002700:CDS 50.0%
TTTGCACCAGGGCAATCAGA+TGG + chr1_1:4863743-4863762 Msa0002700:CDS 50.0%
TTGCACCAGGGCAATCAGAT+GGG + chr1_1:4863744-4863763 Msa0002700:CDS 50.0%
TTCAGTTTCCCGCCAGACAA+AGG + chr1_1:4864481-4864500 Msa0002700:CDS 50.0%
CCGCCAGACAAAGGAAATGT+AGG + chr1_1:4864490-4864509 Msa0002700:CDS 50.0%
GAAAATTGGGGAAAGCCTCC+TGG + chr1_1:4864736-4864755 Msa0002700:CDS 50.0%
TGCGGATGGAGAGAATCTGT+TGG + chr1_1:4864768-4864787 Msa0002700:CDS 50.0%
GCTACGAAGGTGATCCTATG+CGG + chr1_1:4864842-4864861 Msa0002700:CDS 50.0%
GGTTCCCTTGAATTCATGCC+TGG + chr1_1:4864970-4864989 Msa0002700:CDS 50.0%
TTCATGCCTGGAAAGCAGGT+AGG + chr1_1:4864982-4865001 Msa0002700:CDS 50.0%
TCATGCCTGGAAAGCAGGTA+GGG + chr1_1:4864983-4865002 Msa0002700:CDS 50.0%
GTTATCCCGACAGTCTGATC+GGG + chr1_1:4865019-4865038 Msa0002700:CDS 50.0%
TGCTGCAAACAACCCTTCAG+AGG + chr1_1:4865065-4865084 Msa0002700:CDS 50.0%
TGGCTATGGTAGCCTCTGAA+GGG - chr1_1:4865080-4865099 None:intergenic 50.0%
TTGGCTATGGTAGCCTCTGA+AGG - chr1_1:4865081-4865100 None:intergenic 50.0%
ATTTGCGTAGCTCCTGCGTT+TGG - chr1_1:4865100-4865119 None:intergenic 50.0%
! TACAGTCCTGCATTTTCGGC+TGG - chr1_1:4865144-4865163 None:intergenic 50.0%
CTCGTCGTATCAGTCACTCA+AGG + chr1_1:4865194-4865213 Msa0002700:CDS 50.0%
CAAGGATGTGGATTTGCCAG+AGG + chr1_1:4865281-4865300 Msa0002700:CDS 50.0%
GATGTGGATTTGCCAGAGGA+GGG + chr1_1:4865285-4865304 Msa0002700:CDS 50.0%
!! GCGAGATCTTGTTGTTGGGA+AGG + chr1_1:4865329-4865348 Msa0002700:CDS 50.0%
CCAATGACATGGAGTCCACA+AGG - chr1_1:4865393-4865412 None:intergenic 50.0%
CCTTGTGGACTCCATGTCAT+TGG + chr1_1:4865390-4865409 Msa0002700:CDS 50.0%
CATAGCTGCACTTGATCGTG+TGG + chr1_1:4865455-4865474 Msa0002700:CDS 50.0%
GCACTTGATCGTGTGGAAGA+AGG + chr1_1:4865462-4865481 Msa0002700:CDS 50.0%
AGCTAGTATAGAAGGGAGGG+AGG - chr1_1:4865493-4865512 None:intergenic 50.0%
AATTGCTCCGCGTGATGCTT+CGG - chr1_1:4865602-4865621 None:intergenic 50.0%
TATGCCGAATCCAAGGATGG+AGG - chr1_1:4865689-4865708 None:intergenic 50.0%
GCTCGTTTATGCCGAATCCA+AGG - chr1_1:4865696-4865715 None:intergenic 50.0%
GATTCGGCATAAACGAGCCA+TGG + chr1_1:4865698-4865717 Msa0002700:three_prime_UTR 50.0%
CTCTCCATTGCTGCTGTAGT+AGG - chr1_1:4865958-4865977 None:intergenic 50.0%
AGTACAAGGGCAACTGTCTC+AGG - chr1_1:4866042-4866061 None:intergenic 50.0%
AGACAGTTGCCCTTGTACTG+TGG + chr1_1:4866043-4866062 Msa0002700:three_prime_UTR 50.0%
GACAGTTGCCCTTGTACTGT+GGG + chr1_1:4866044-4866063 Msa0002700:three_prime_UTR 50.0%
ACAGTTGCCCTTGTACTGTG+GGG + chr1_1:4866045-4866064 Msa0002700:three_prime_UTR 50.0%
AATCCCTTGCTCAGGTTCTG+TGG + chr1_1:4866094-4866113 Msa0002700:three_prime_UTR 50.0%
CATCCACAGAACCTGAGCAA+GGG - chr1_1:4866100-4866119 None:intergenic 50.0%
TCATCCACAGAACCTGAGCA+AGG - chr1_1:4866101-4866120 None:intergenic 50.0%
GCTCAGGTTCTGTGGATGAT+TGG + chr1_1:4866102-4866121 Msa0002700:three_prime_UTR 50.0%
CGATAGCTGATAACCTCGGA+AGG + chr1_1:4866133-4866152 Msa0002700:three_prime_UTR 50.0%
CCAAGCTCTTCAAGGCTTAC+AGG - chr1_1:4866174-4866193 None:intergenic 50.0%
CCTGTAAGCCTTGAAGAGCT+TGG + chr1_1:4866171-4866190 Msa0002700:three_prime_UTR 50.0%
TTAACGACGACGTCAACCCT+AGG - chr1_1:4866201-4866220 None:intergenic 50.0%
GACGTCGTCGTTAATTGCTC+TGG + chr1_1:4866207-4866226 Msa0002700:three_prime_UTR 50.0%
ATGGAACAAGCTGAAGCCCT+AGG + chr1_1:4866577-4866596 Msa0002700:three_prime_UTR 50.0%
TGGAACAAGCTGAAGCCCTA+GGG + chr1_1:4866578-4866597 Msa0002700:three_prime_UTR 50.0%
CTTCTCGAACTTCAACCCCT+AGG - chr1_1:4866597-4866616 None:intergenic 50.0%
AAGTTCGAGAAGCCGCAACA+AGG + chr1_1:4866605-4866624 Msa0002700:three_prime_UTR 50.0%
AGGATCTTCTCCAATGCCTC+AGG + chr1_1:4866625-4866644 Msa0002700:three_prime_UTR 50.0%
GTTTGAGGAGTAGGATCCTG+AGG - chr1_1:4866644-4866663 None:intergenic 50.0%
! TTTTCAGTCATGCCTGCACC+AGG - chr1_1:4866763-4866782 None:intergenic 50.0%
GGGAGATTTCCGATGAGTCA+AGG - chr1_1:4866837-4866856 None:intergenic 50.0%
!!! TTTTACCTGGGCATTGGCAG+TGG - chr1_1:4866959-4866978 None:intergenic 50.0%
! TGAAAGGGTGCGTACCTGAA+AGG - chr1_1:4867309-4867328 None:intergenic 50.0%
! CCATTTGGGGTTCAACAGCT+TGG - chr1_1:4867357-4867376 None:intergenic 50.0%
CCAAGCTGTTGAACCCCAAA+TGG + chr1_1:4867354-4867373 Msa0002700:three_prime_UTR 50.0%
GTGTTCGGGAAATCGAGAAG+AGG + chr1_1:4867408-4867427 Msa0002700:three_prime_UTR 50.0%
GTTGGATGGAGTGCAACTTC+TGG + chr1_1:4867443-4867462 Msa0002700:three_prime_UTR 50.0%
GCACAAATCCCAACTCCTTC+AGG + chr1_1:4867543-4867562 Msa0002700:three_prime_UTR 50.0%
ACCAGCTTCCTGAAGGAGTT+GGG - chr1_1:4867554-4867573 None:intergenic 50.0%
TGTTTGCACCAGCTTCCTGA+AGG - chr1_1:4867561-4867580 None:intergenic 50.0%
TTCTTGGAAGCCAATGGACG+CGG + chr1_1:4867581-4867600 Msa0002700:three_prime_UTR 50.0%
AAGCCAATGGACGCGGATAT+TGG + chr1_1:4867588-4867607 Msa0002700:three_prime_UTR 50.0%
AGCCAATGGACGCGGATATT+GGG + chr1_1:4867589-4867608 Msa0002700:three_prime_UTR 50.0%
TTCCCAATATCCGCGTCCAT+TGG - chr1_1:4867594-4867613 None:intergenic 50.0%
GAGGCAGTTGTACTCAGAAG+TGG + chr1_1:4867640-4867659 Msa0002700:three_prime_UTR 50.0%
TGGTGAAAGTTTGGCCCACG+TGG - chr1_1:4861510-4861529 None:intergenic 55.0%
TCTAGCCCTCCGGCGAAAAT+TGG - chr1_1:4862906-4862925 None:intergenic 55.0%
! CGCCGGAGGGCTAGATTTTT+CGG + chr1_1:4862911-4862930 Msa0002700:five_prime_UTR 55.0%
! GCCGGAGGGCTAGATTTTTC+GGG + chr1_1:4862912-4862931 Msa0002700:five_prime_UTR 55.0%
GCCCGAAAAATCTAGCCCTC+CGG - chr1_1:4862916-4862935 None:intergenic 55.0%
!!! GAGGGCTAGATTTTTCGGGC+CGG + chr1_1:4862916-4862935 Msa0002700:five_prime_UTR 55.0%
GCATTGCCAGAGCTAGATGG+AGG + chr1_1:4863175-4863194 Msa0002700:CDS 55.0%
GCCAGAGCTAGATGGAGGAA+TGG + chr1_1:4863180-4863199 Msa0002700:CDS 55.0%
! GCCGATAGTTTTCGCTGGTC+GGG + chr1_1:4863204-4863223 Msa0002700:CDS 55.0%
AGTGGAGCAGCTTTGCACCA+GGG + chr1_1:4863732-4863751 Msa0002700:CDS 55.0%
TGGCATAGGGAGTGAGAGCT+TGG - chr1_1:4864705-4864724 None:intergenic 55.0%
GCCTCCTGGGAATCTGAATG+CGG + chr1_1:4864750-4864769 Msa0002700:CDS 55.0%
TCCGCATTCAGATTCCCAGG+AGG - chr1_1:4864754-4864773 None:intergenic 55.0%
CCATCCGCATTCAGATTCCC+AGG - chr1_1:4864757-4864776 None:intergenic 55.0%
CCTGGGAATCTGAATGCGGA+TGG + chr1_1:4864754-4864773 Msa0002700:CDS 55.0%
CTCATCCCTACCTGCTTTCC+AGG - chr1_1:4864991-4865010 None:intergenic 55.0%
AGGCTACCATAGCCAAACGC+AGG + chr1_1:4865085-4865104 Msa0002700:CDS 55.0%
GTAGCTCCTGCGTTTGGCTA+TGG - chr1_1:4865094-4865113 None:intergenic 55.0%
ACTCCTCCAGCCGAAAATGC+AGG + chr1_1:4865135-4865154 Msa0002700:CDS 55.0%
! AGTCCTGCATTTTCGGCTGG+AGG - chr1_1:4865141-4865160 None:intergenic 55.0%
GGATGTGGATTTGCCAGAGG+AGG + chr1_1:4865284-4865303 Msa0002700:CDS 55.0%
CATGGAGTCCACAAGGCAAC+AGG - chr1_1:4865386-4865405 None:intergenic 55.0%
TGGGTGGCTCACCAATGACA+TGG - chr1_1:4865404-4865423 None:intergenic 55.0%
TTTGTAGAGCCAGGACCTGG+AGG + chr1_1:4865862-4865881 Msa0002700:three_prime_UTR 55.0%
GGAACAAGCTGAAGCCCTAG+GGG + chr1_1:4866579-4866598 Msa0002700:three_prime_UTR 55.0%
GGAGTAGGATCCTGAGGCAT+TGG - chr1_1:4866638-4866657 None:intergenic 55.0%
GATTGTGATGCTCCTGGTGC+AGG + chr1_1:4866748-4866767 Msa0002700:three_prime_UTR 55.0%
TCCCAACTCCTTCAGGAAGC+TGG + chr1_1:4867550-4867569 Msa0002700:three_prime_UTR 55.0%
CACCAGCTTCCTGAAGGAGT+TGG - chr1_1:4867555-4867574 None:intergenic 55.0%
TGTTGGAGGGCCTGCTAGAC+AGG + chr1_1:4863015-4863034 Msa0002700:five_prime_UTR 60.0%
GCTGGTCGGGATCCCAAAAC+AGG + chr1_1:4863217-4863236 Msa0002700:CDS 60.0%
GAGTGGAGCAGCTTTGCACC+AGG + chr1_1:4863731-4863750 Msa0002700:CDS 60.0%
CTCAGCCCATCTGATTGCCC+TGG - chr1_1:4863752-4863771 None:intergenic 60.0%
TCACTCAAGGACACTGGCCG+CGG + chr1_1:4865207-4865226 Msa0002700:CDS 60.0%
GGATTTGCCAGAGGAGGGTG+TGG + chr1_1:4865290-4865309 Msa0002700:CDS 60.0%
GAGTCCACAAGGCAACAGGC+GGG - chr1_1:4865382-4865401 None:intergenic 60.0%
GGAGTCCACAAGGCAACAGG+CGG - chr1_1:4865383-4865402 None:intergenic 60.0%
TTTCTGATCGGGTCGCCTCC+AGG - chr1_1:4865880-4865899 None:intergenic 60.0%
CTACACGGTTGACCCTTCCG+AGG - chr1_1:4866149-4866168 None:intergenic 60.0%
TACCACCACTGCCAATGCCC+AGG + chr1_1:4866951-4866970 Msa0002700:three_prime_UTR 60.0%
!! TACCTGGGCATTGGCAGTGG+TGG - chr1_1:4866956-4866975 None:intergenic 60.0%
GGAAGCTCCACACCCTCCTC+TGG - chr1_1:4865300-4865319 None:intergenic 65.0%
GAGTCCCGCCTGTTGCCTTG+TGG + chr1_1:4865375-4865394 Msa0002700:CDS 65.0%
ATCGGGTCGCCTCCAGGTCC+TGG - chr1_1:4865874-4865893 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4861432 4867974 4861432 ID=Msa0002700;Name=Msa0002700
chr1_1 mRNA 4861432 4867974 4861432 ID=Msa0002700-mRNA-1;Parent=Msa0002700;Name=Msa0002700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=1632|1|1|1|1|0.8|5|1847|450
chr1_1 exon 4861432 4863238 4861432 ID=Msa0002700-mRNA-1:exon:1455;Parent=Msa0002700-mRNA-1
chr1_1 exon 4863707 4863789 4863707 ID=Msa0002700-mRNA-1:exon:1456;Parent=Msa0002700-mRNA-1
chr1_1 exon 4864454 4866257 4864454 ID=Msa0002700-mRNA-1:exon:1457;Parent=Msa0002700-mRNA-1
chr1_1 exon 4866496 4866972 4866496 ID=Msa0002700-mRNA-1:exon:1458;Parent=Msa0002700-mRNA-1
chr1_1 exon 4867314 4867974 4867314 ID=Msa0002700-mRNA-1:exon:1459;Parent=Msa0002700-mRNA-1
chr1_1 five_prime_UTR 4861432 4863063 4861432 ID=Msa0002700-mRNA-1:five_prime_utr;Parent=Msa0002700-mRNA-1
chr1_1 CDS 4863064 4863238 4863064 ID=Msa0002700-mRNA-1:cds;Parent=Msa0002700-mRNA-1
chr1_1 CDS 4863707 4863789 4863707 ID=Msa0002700-mRNA-1:cds;Parent=Msa0002700-mRNA-1
chr1_1 CDS 4864454 4865548 4864454 ID=Msa0002700-mRNA-1:cds;Parent=Msa0002700-mRNA-1
chr1_1 three_prime_UTR 4865549 4866257 4865549 ID=Msa0002700-mRNA-1:three_prime_utr;Parent=Msa0002700-mRNA-1
chr1_1 three_prime_UTR 4866496 4866972 4866496 ID=Msa0002700-mRNA-1:three_prime_utr;Parent=Msa0002700-mRNA-1
chr1_1 three_prime_UTR 4867314 4867974 4867314 ID=Msa0002700-mRNA-1:three_prime_utr;Parent=Msa0002700-mRNA-1
Gene Sequence

>Msa0002700

ATGAAGCTTGATGTTCCTTATATTGTTGCTTTGCCACTGGTTTTCCAGACAACTGAAGAGTGGTTGAATAGTACTTTGGGTTTGCATCCAATTCAAGTTGCTCTTCAAGTTGCATTGCCAGAGCTAGATGGAGGAATGGAGCCGATAGTTTTCGCTGGTCGGGATCCCAAAACAGGAAAATCTCACGCTCTTCACAAGAGAGTGGAGCAGCTTTGCACCAGGGCAATCAGATGGGCTGAGTTGAAAAGAAAAACAAAGGAAGACAAGAAACTAGCAATCACTGTCTTCAGTTTCCCGCCAGACAAAGGAAATGTAGGAACCGCTGCGTACCTAAACGTTTTCTCCTCCATTTTCTCTGTTCTAAAAGAACTTCAAAGTGATGGTTACAATGTTGAAGGTCTTCCCGAGACTTCAGAAGCATTGATTGAAGATATATTACATGACAAAGAAGCACAATTCAGCAGCCCAAATCTCAACATTGCTTACAAAATGAACGTCCGTGAATACCAAGCTCTCACTCCCTATGCCACAGCATTAGAAGAAAATTGGGGAAAGCCTCCTGGGAATCTGAATGCGGATGGAGAGAATCTGTTGGTATATGGTAAGCAATATGGTAATGTATTCATAGGTGTTCAACCTACATTTGGCTACGAAGGTGATCCTATGCGGTTACTTTTCTCCAAATCTGCAAGCCCTCATCATGGTTTTGCAGCATATTACTCTTTTGTCGAGAAAATTTTCAAAGCTGATGCTGTTCTTCATTTCGGCACACACGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTAGGGATGAGTGATGTATGTTATCCCGACAGTCTGATCGGGAATATTCCAAATGTCTATTACTATGCTGCAAACAACCCTTCAGAGGCTACCATAGCCAAACGCAGGAGCTACGCAAATACCATAAGCTATCTTACTCCTCCAGCCGAAAATGCAGGACTGTACAAGGGTCTTAAGCAGTTAAGTGAACTCATCTCGTCGTATCAGTCACTCAAGGACACTGGCCGCGGTCAACAAATTGTGAGTTCAATTATTAGCACGGCTAAACAATGCAATCTCGACAAGGATGTGGATTTGCCAGAGGAGGGTGTGGAGCTTCCCACTAAAGAGCGAGATCTTGTTGTTGGGAAGGTGTATGCTAAGATCATGGAGATTGAGTCCCGCCTGTTGCCTTGTGGACTCCATGTCATTGGTGAGCCACCCACAGCCATGGAAGCAGTTGCTACATTGGTGAACATAGCTGCACTTGATCGTGTGGAAGAAGGTATTTCCTCCCTCCCTTCTATACTAGCTCAGAGTGTAGGAAGAAAACATAGAGGAAATTTATAG
Protein sequence

>Msa0002700

MKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIRWAELKRKTKEDKKLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELQSDGYNVEGLPETSEALIEDILHDKEAQFSSPNLNIAYKMNVREYQALTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGQQIVSSIISTAKQCNLDKDVDLPEEGVELPTKERDLVVGKVYAKIMEIESRLLPCGLHVIGEPPTAMEAVATLVNIAALDRVEEGISSLPSILAQSVGRKHRGNL*