AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700870 MtrunA17_Chr8g0378721 91.871 529 43 0 1 529 1 529 0.0 1028
Msa0700870 MtrunA17_Chr8g0378671 86.742 528 67 2 1 527 1 526 0.0 964
Msa0700870 MtrunA17_Chr8g0378701 87.696 382 47 0 1 382 15 396 0.0 713
Msa0700870 MtrunA17_Chr8g0378691 90.411 146 14 0 382 527 9 154 9.69e-91 275
Msa0700870 MtrunA17_Chr4g0027961 36.000 475 255 17 78 527 89 539 1.10e-83 270
Msa0700870 MtrunA17_Chr3g0136771 28.538 431 254 12 67 465 84 492 3.80e-46 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700870 AT4G25650.1 64.316 468 158 3 69 527 67 534 0.0 668
Msa0700870 AT4G25650.2 61.303 491 158 4 69 527 67 557 0.0 655
Msa0700870 AT3G44880.1 34.733 524 275 20 43 527 39 534 9.61e-85 273
Msa0700870 AT2G24820.1 27.533 454 268 12 49 465 50 479 2.63e-46 170
Msa0700870 AT1G44446.4 21.892 370 212 15 85 431 119 434 3.25e-11 65.9
Msa0700870 AT1G44446.1 21.892 370 212 15 85 431 221 536 4.10e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGGTGCAAGTTTATT+TGG 0.156557 4_4:+72032362 None:intergenic
CATTAGGAATTCAAATTAAA+TGG 0.162683 4_4:+72030239 None:intergenic
CAACAAAGAATATAGGAATT+TGG 0.172236 4_4:+72030102 None:intergenic
TCTGAACTTGTTTCATCTTC+AGG 0.212251 4_4:+72034386 None:intergenic
CCGGAATTTGCTAATATTAC+AGG 0.252860 4_4:+72030004 None:intergenic
TTGTATTGAGGATCAGTATT+TGG 0.266413 4_4:+72033333 None:intergenic
ATATCAGATTCTTCCACTTT+TGG 0.267571 4_4:-72029941 Msa0700870:three_prime_UTR
CACCACATTGAGACTCTTAT+AGG 0.274363 4_4:+72030602 None:intergenic
CTTTGGGTTAATACCGCTTT+TGG 0.280602 4_4:-72030029 Msa0700870:three_prime_UTR
CAACGGTTTCACAGCAAATC+AGG 0.294043 4_4:-72032438 Msa0700870:CDS
CTGCTGTTGCCGGGACTAAC+AGG 0.295981 4_4:+72032193 None:intergenic
GAAGTGTTCCCACGAATTAA+TGG 0.299892 4_4:+72034488 None:intergenic
CCTGTCCATAAGTTGTTCTC+TGG 0.305227 4_4:+72031291 None:intergenic
ATCCACAGCCCAAAGTTTCT+TGG 0.314198 4_4:+72032154 None:intergenic
TCAATCCTTCCTTCAGATAA+AGG 0.315750 4_4:+72034197 None:intergenic
GGAAACAGAGATATTGCTTA+TGG 0.316235 4_4:-72033240 Msa0700870:CDS
TGTTGATATTTATTATACTT+TGG 0.320522 4_4:-72030046 Msa0700870:three_prime_UTR
CTACTACTGGAATCTGTTAA+TGG 0.328223 4_4:+72034431 None:intergenic
AACAAAGAATATAGGAATTT+GGG 0.330074 4_4:+72030103 None:intergenic
CCTGTAATATTAGCAAATTC+CGG 0.331131 4_4:-72030004 Msa0700870:three_prime_UTR
GTTGATATTTATTATACTTT+GGG 0.334427 4_4:-72030045 Msa0700870:three_prime_UTR
CAAATTCCTATATTCTTTGT+TGG 0.340214 4_4:-72030101 Msa0700870:three_prime_UTR
TGGGAATTGATGTTGTTATA+TGG 0.344667 4_4:-72034280 Msa0700870:CDS
TATAGCAAGATGTTAGCATT+AGG 0.350375 4_4:+72030223 None:intergenic
ACCTCCCAGAGAACAACTTA+TGG 0.350458 4_4:-72031296 Msa0700870:CDS
CCGTCCTTTACTAGCGTAAT+GGG 0.353585 4_4:-72033261 Msa0700870:CDS
GGGATGTATGTTGCTTTGTT+TGG 0.359314 4_4:-72030164 Msa0700870:three_prime_UTR
CCAAATCAGTCTGCTGTTGC+CGG 0.371564 4_4:+72032183 None:intergenic
GGTGCTTCCCAAGAAACTTT+GGG 0.374338 4_4:-72032162 Msa0700870:CDS
CACGTGAAGGTTACTACTAC+TGG 0.379514 4_4:+72034418 None:intergenic
ATGTTAAATGATTTAGCTTA+GGG 0.379749 4_4:+72034671 None:intergenic
GTGGAAGAATCTGATATTAC+AGG 0.386829 4_4:+72029947 None:intergenic
AATGTTAAATGATTTAGCTT+AGG 0.390329 4_4:+72034670 None:intergenic
AGAATGGTATCGTGTGGTTT+TGG 0.391412 4_4:-72033356 Msa0700870:CDS
ATCATATCAGTTGCTTCAGT+TGG 0.398957 4_4:-72030564 Msa0700870:CDS
AAGGCAGATGCTCTTGTGAT+TGG 0.399532 4_4:-72031397 Msa0700870:CDS
CTCTGGGAGGTGTAGGAGGA+AGG 0.400762 4_4:+72031308 None:intergenic
CCGGCAACAGCAGACTGATT+TGG 0.404958 4_4:-72032183 Msa0700870:CDS
AAGGACGGATCATCAATTTC+TGG 0.405521 4_4:+72033276 None:intergenic
ATTCATCCAACAAAGAATAT+AGG 0.408603 4_4:+72030095 None:intergenic
TGGTGCTTCCCAAGAAACTT+TGG 0.411359 4_4:-72032163 Msa0700870:CDS
ATACCATTCTGCACAGTACT+TGG 0.413715 4_4:+72033369 None:intergenic
TGAAGGAAGGATTGATCAAT+GGG 0.415631 4_4:-72034189 Msa0700870:CDS
ACAAGAGCATCTGCCTTTGT+TGG 0.416937 4_4:+72031403 None:intergenic
AAACATTGCCTTCTGCCAAT+TGG 0.423428 4_4:+72031429 None:intergenic
TCCACAGCCCAAAGTTTCTT+GGG 0.430795 4_4:+72032155 None:intergenic
GTAATAATATCTTTGTATTG+AGG 0.430842 4_4:+72033321 None:intergenic
AGTTCAGAAGAAATTTGCTT+TGG 0.431020 4_4:-72032230 Msa0700870:CDS
CATCAATTTCTGGTATGAAT+GGG 0.432152 4_4:+72033286 None:intergenic
AGCTACAACAAGAAATTCAA+TGG 0.435956 4_4:-72030508 Msa0700870:CDS
TCATCAATTTCTGGTATGAA+TGG 0.439816 4_4:+72033285 None:intergenic
TCCCAAGAAACTTTGGGCTG+TGG 0.443485 4_4:-72032156 Msa0700870:CDS
TGTTCCCTTCTGCAAAGTAA+TGG 0.446881 4_4:+72034620 None:intergenic
AAGAAATTCAATGGTTGTGT+TGG 0.446962 4_4:-72030499 Msa0700870:CDS
AATATGCAATTTCAGGTATG+AGG 0.448521 4_4:-72032682 Msa0700870:intron
CAATATGTGATCTTGACAAA+AGG 0.457440 4_4:-72034325 Msa0700870:CDS
CTGTCCATAAGTTGTTCTCT+GGG 0.462546 4_4:+72031292 None:intergenic
TATTCTTTGTTGGATGAATG+AGG 0.464146 4_4:-72030091 Msa0700870:three_prime_UTR
ATATGTGGTTCAAGTGCTAT+TGG 0.474819 4_4:+72034560 None:intergenic
CTGAAGGAAGGATTGATCAA+TGG 0.475748 4_4:-72034190 Msa0700870:CDS
TATCTAACTCTTCAATTGAC+AGG 0.476177 4_4:+72032462 None:intergenic
TGCTTTCATTCGCGTTGTCA+CGG 0.476403 4_4:-72030473 Msa0700870:CDS
GAAACAGAGATATTGCTTAT+GGG 0.479650 4_4:-72033239 Msa0700870:intron
GGCACCTCCTGACGGACCTC+CGG 0.480246 4_4:-72034099 Msa0700870:intron
AATATCAACATCTCTAGAAA+AGG 0.481507 4_4:+72030059 None:intergenic
TGCACCTTCTGATGAAACTA+AGG 0.483654 4_4:-72032351 Msa0700870:intron
GAATGGAGAGGAAAATATAG+TGG 0.487849 4_4:-72031334 Msa0700870:CDS
GTAGTTACCGGAGGTCCGTC+AGG 0.488978 4_4:+72034092 None:intergenic
TTGGTACTTAAGAGGAGCGT+TGG 0.490914 4_4:-72030313 Msa0700870:three_prime_UTR
GATAATGAAACTAGAGGCTC+AGG 0.491540 4_4:+72034693 None:intergenic
CAACACTTCCATTAATTCGT+GGG 0.491754 4_4:-72034496 Msa0700870:CDS
TCATATCAGTTGCTTCAGTT+GGG 0.492517 4_4:-72030563 Msa0700870:CDS
TGATTGCAAGTTCATTCCTC+AGG 0.492594 4_4:-72034120 Msa0700870:CDS
TCCGTCCTTTACTAGCGTAA+TGG 0.492928 4_4:-72033262 Msa0700870:CDS
CAAATCAGTCTGCTGTTGCC+GGG 0.495892 4_4:+72032184 None:intergenic
ATACACACACATAACAAAGT+TGG 0.497222 4_4:+72030378 None:intergenic
ATTTGTATTCCTGTTAGTCC+CGG 0.500956 4_4:-72032202 Msa0700870:CDS
TGGATGTTGGTCAAGCCAAT+TGG 0.502926 4_4:-72031444 Msa0700870:CDS
GTTACCTTAGTTTCATCAGA+AGG 0.511824 4_4:+72032347 None:intergenic
GATTGTTGCCACAATGAAGC+AGG 0.513141 4_4:-72030541 Msa0700870:CDS
GATAAAGGTGCTAATCTATG+AGG 0.517916 4_4:+72034212 None:intergenic
TTGTTCCATTACTTTGCAGA+AGG 0.519568 4_4:-72034625 Msa0700870:five_prime_UTR
TGTGCATATGTAGTATGTGC+AGG 0.520193 4_4:+72032636 None:intergenic
AATATGTGATCTTGACAAAA+GGG 0.523473 4_4:-72034324 Msa0700870:CDS
TCAACACTTCCATTAATTCG+TGG 0.523749 4_4:-72034497 Msa0700870:CDS
AAATGGTTAAAGAAGTATGC+AGG 0.524010 4_4:-72031367 Msa0700870:CDS
AGTTGTTCTCTGGGAGGTGT+AGG 0.528179 4_4:+72031301 None:intergenic
TCTGGGAGGTGTAGGAGGAA+GGG 0.530338 4_4:+72031309 None:intergenic
AGATCACATATTGGCATCAA+AGG 0.530584 4_4:+72034335 None:intergenic
TTCTGTTGTGGAACATGTGA+AGG 0.532955 4_4:-72030186 Msa0700870:three_prime_UTR
GTTTCCCATTACGCTAGTAA+AGG 0.533694 4_4:+72033257 None:intergenic
CTGGAATCTGTTAATGGAGA+AGG 0.535723 4_4:+72034437 None:intergenic
AACTCTTACAATTCACCGTA+TGG 0.536185 4_4:+72030634 None:intergenic
TAGCACCTTTATCTGAAGGA+AGG 0.536409 4_4:-72034202 Msa0700870:CDS
ATGCAGGTGATCAAGTTGAA+TGG 0.536676 4_4:-72031351 Msa0700870:CDS
GTCAAAAGAATCTGCATACA+TGG 0.537509 4_4:-72029902 Msa0700870:three_prime_UTR
GTTTCACAGCAAATCAGGGT+TGG 0.537857 4_4:-72032433 Msa0700870:CDS
CCCATCACTTTCTTAGCATG+AGG 0.538954 4_4:+72034299 None:intergenic
AACGGTTTCACAGCAAATCA+GGG 0.544637 4_4:-72032437 Msa0700870:CDS
AGATTAGCACCTTTATCTGA+AGG 0.544881 4_4:-72034206 Msa0700870:CDS
ATGAACACTCCAAAACCAAA+AGG 0.547696 4_4:-72032603 Msa0700870:intron
AGGTTACAGTGTGTGTATCA+TGG 0.551337 4_4:-72034164 Msa0700870:CDS
ATTCTTTGTTGGATGAATGA+GGG 0.551696 4_4:-72030090 Msa0700870:three_prime_UTR
TTCACATGTTCCACAACAGA+AGG 0.552489 4_4:+72030188 None:intergenic
CCAGAGAACAACTTATGGAC+AGG 0.552971 4_4:-72031291 Msa0700870:intron
TGGAGATTAATTTCAGCGAA+AGG 0.555282 4_4:+72030398 None:intergenic
GTGAAATGAGGGACCAAAAG+TGG 0.555550 4_4:+72029928 None:intergenic
CGGAATTTGCTAATATTACA+GGG 0.556602 4_4:+72030005 None:intergenic
TGCCACAATGAAGCAGGGTG+TGG 0.560699 4_4:-72030535 Msa0700870:CDS
TGTTCTCTGGGAGGTGTAGG+AGG 0.562948 4_4:+72031304 None:intergenic
ATTGAAGAGTTAGATATCAA+CGG 0.563093 4_4:-72032455 Msa0700870:CDS
ATTCCTCAGGCACCTCCTGA+CGG 0.563702 4_4:-72034107 Msa0700870:CDS
TTGACAAAATTGTACCGCGA+TGG 0.563874 4_4:-72032132 Msa0700870:CDS
ATCAATTTCTGGTATGAATG+GGG 0.563979 4_4:+72033287 None:intergenic
ACCTCATGCTAAGAAAGTGA+TGG 0.565040 4_4:-72034300 Msa0700870:CDS
TACAGTGTGTGTATCATGGT+TGG 0.568463 4_4:-72034160 Msa0700870:CDS
GAAAGGCGTGGTTGTAGTCA+TGG 0.570529 4_4:+72030415 None:intergenic
GAAGGATTGATCAATGGGGT+AGG 0.572052 4_4:-72034184 Msa0700870:CDS
GTATATGCATAAAAGATGCT+TGG 0.572412 4_4:+72032389 None:intergenic
TACCCAAGTACTGTGCAGAA+TGG 0.574247 4_4:-72033372 Msa0700870:CDS
TTGCAGAAGGGAACAAACAA+TGG 0.574838 4_4:-72034612 Msa0700870:exon
CAAGTTCAGAGAAATTTGAC+TGG 0.578841 4_4:-72034373 Msa0700870:CDS
GTGAAAGCTGATAGAGAAGG+AGG 0.578869 4_4:-72032497 Msa0700870:CDS
CCTCATGCTAAGAAAGTGAT+GGG 0.581206 4_4:-72034299 Msa0700870:CDS
CCCATTACGCTAGTAAAGGA+CGG 0.582016 4_4:+72033261 None:intergenic
AATTGATGTTGTTATATGGT+GGG 0.583888 4_4:-72034276 Msa0700870:CDS
AGTACCAATAAAACAAGTAA+CGG 0.587278 4_4:+72030328 None:intergenic
GAATTGATGTTGTTATATGG+TGG 0.587435 4_4:-72034277 Msa0700870:CDS
CATACTACATATGCACACTA+CGG 0.590698 4_4:-72032630 Msa0700870:CDS
GGCAATGTTTGTGCCAACAA+AGG 0.593457 4_4:-72031416 Msa0700870:CDS
TACCATTCTGCACAGTACTT+GGG 0.594856 4_4:+72033370 None:intergenic
CGTGGTTGTAGTCATGGTAA+CGG 0.596317 4_4:+72030421 None:intergenic
GGTTCTGATTGAAAACCTCA+TGG 0.598068 4_4:-72032661 Msa0700870:CDS
GGTCCGTCAGGAGGTGCCTG+AGG 0.603706 4_4:+72034104 None:intergenic
CAGGTTCATCATCCACGTGA+AGG 0.603801 4_4:+72034405 None:intergenic
TATGCATAAAAGATGCTTGG+TGG 0.606284 4_4:+72032392 None:intergenic
TGTTCCATTACTTTGCAGAA+GGG 0.607145 4_4:-72034624 Msa0700870:five_prime_UTR
ATTAATTTCAGCGAAAGGCG+TGG 0.609911 4_4:+72030403 None:intergenic
TCTTCAATTGACAGGTCAAG+TGG 0.615205 4_4:+72032470 None:intergenic
AATACAAAGATATTATTACA+AGG 0.616833 4_4:-72033317 Msa0700870:CDS
AATATTACAGGGACCAAAAG+CGG 0.625604 4_4:+72030016 None:intergenic
AACCACACCCTGCTTCATTG+TGG 0.629575 4_4:+72030533 None:intergenic
GGGATAGAAATGAGAATGCA+TGG 0.630522 4_4:-72034256 Msa0700870:CDS
TGGTCAAGCCAATTGGCAGA+AGG 0.632277 4_4:-72031437 Msa0700870:CDS
TCCATAAGTTGTTCTCTGGG+AGG 0.632920 4_4:+72031295 None:intergenic
TCTGTTGTGGAACATGTGAA+GGG 0.634943 4_4:-72030185 Msa0700870:three_prime_UTR
TGGAAGAATCTGATATTACA+GGG 0.635210 4_4:+72029948 None:intergenic
CTTAGGGATAATGAAACTAG+AGG 0.635581 4_4:+72034687 None:intergenic
CAGTAGTAGTAACCTTCACG+TGG 0.639581 4_4:-72034417 Msa0700870:CDS
TACGTATCTTCTCCATGTTG+AGG 0.640030 4_4:-72032071 Msa0700870:intron
GAACAGGTACTGGAGCCATA+CGG 0.641416 4_4:-72030649 Msa0700870:intron
CTATAAGAGTCTCAATGTGG+TGG 0.643278 4_4:-72030601 Msa0700870:CDS
GTGCATATGTAGTATGTGCA+GGG 0.644617 4_4:+72032637 None:intergenic
TTTCATTCGCGTTGTCACGG+TGG 0.645969 4_4:-72030470 Msa0700870:CDS
TAAAAGAAATTACCTCAACA+TGG 0.650469 4_4:+72032059 None:intergenic
TCAATTTCTGGTATGAATGG+GGG 0.651927 4_4:+72033288 None:intergenic
ACAGTGAAAGCTGATAGAGA+AGG 0.655364 4_4:-72032500 Msa0700870:intron
GGTGATCAAGTTGAATGGAG+AGG 0.656464 4_4:-72031346 Msa0700870:CDS
TAGTATGTGCAGGGTCCATG+AGG 0.657402 4_4:+72032646 None:intergenic
TCACATGTTCCACAACAGAA+GGG 0.659757 4_4:+72030189 None:intergenic
GTTACCGGAGGTCCGTCAGG+AGG 0.667806 4_4:+72034095 None:intergenic
GGAGCGTTGGAACATTTGTG+TGG 0.668212 4_4:-72030300 Msa0700870:three_prime_UTR
TGTTAATGGAGAAGGTGACA+AGG 0.682450 4_4:+72034445 None:intergenic
CTGTTGTGGAACATGTGAAG+GGG 0.699583 4_4:-72030184 Msa0700870:three_prime_UTR
AATTTGACTGGTACTCACAG+TGG 0.710936 4_4:-72034361 Msa0700870:CDS
ATTGTTGCCACAATGAAGCA+GGG 0.715859 4_4:-72030540 Msa0700870:CDS
AGCCTATAAGAGTCTCAATG+TGG 0.722672 4_4:-72030604 Msa0700870:CDS
CTGTGCAGAATGGTATCGTG+TGG 0.742797 4_4:-72033362 Msa0700870:CDS
GAAGGAAGGATTGATCAATG+GGG 0.799393 4_4:-72034188 Msa0700870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTGATTTTTGAAAT+GGG + chr4_4:72030069-72030088 None:intergenic 10.0%
!!! AAAAATATTGATTTTTGAAA+TGG + chr4_4:72030070-72030089 None:intergenic 10.0%
!! AAAACAAATAAAAATTCAAA+GGG + chr4_4:72031715-72031734 None:intergenic 10.0%
!! TAAAACAAATAAAAATTCAA+AGG + chr4_4:72031716-72031735 None:intergenic 10.0%
!! TAAAAATACCTTTATATAAA+AGG - chr4_4:72031770-72031789 Msa0700870:intron 10.0%
!!! TAAATGAATAATTTTTTAAC+AGG - chr4_4:72031800-72031819 Msa0700870:intron 10.0%
!!! TTTTATAATATACAAATCAT+TGG - chr4_4:72032562-72032581 Msa0700870:intron 10.0%
!!! TTTTATATTTGACAAATTTT+AGG + chr4_4:72033887-72033906 None:intergenic 10.0%
!! AAAAAATTATTAATTGCATT+TGG - chr4_4:72033926-72033945 Msa0700870:intron 10.0%
!!! AAATCTAATTTTTTTTTACA+GGG + chr4_4:72034632-72034651 None:intergenic 10.0%
!!! AAAATCTAATTTTTTTTTAC+AGG + chr4_4:72034633-72034652 None:intergenic 10.0%
!! TCCATATATTCAATTATTAT+CGG + chr4_4:72030918-72030937 None:intergenic 15.0%
!! AATACAAAGATATTATTACA+AGG - chr4_4:72031286-72031305 Msa0700870:intron 15.0%
!!! CATTTTTCATAATATAAGTA+AGG + chr4_4:72032300-72032319 None:intergenic 15.0%
!! TTGATAGGAAAAAAAAATAA+TGG - chr4_4:72033139-72033158 Msa0700870:intron 15.0%
!!! AAACATTTTAAAGTAAAAAC+AGG + chr4_4:72033734-72033753 None:intergenic 15.0%
!!! TTAAAATGTTTTAGTTTTGT+CGG - chr4_4:72033743-72033762 Msa0700870:intron 15.0%
!! TGTTGATATTTATTATACTT+TGG - chr4_4:72034557-72034576 Msa0700870:CDS 15.0%
!! GTTGATATTTATTATACTTT+GGG - chr4_4:72034558-72034577 Msa0700870:CDS 15.0%
!!! ATGTTAAATGATTTAGCTTA+GGG + chr4_4:72029935-72029954 None:intergenic 20.0%
!!! AATGTTAAATGATTTAGCTT+AGG + chr4_4:72029936-72029955 None:intergenic 20.0%
!! ACCGATAATAATTGAATATA+TGG - chr4_4:72030914-72030933 Msa0700870:intron 20.0%
!! GTAATAATATCTTTGTATTG+AGG + chr4_4:72031285-72031304 None:intergenic 20.0%
!! ATTTAACTCGTAATTTCTTA+GGG + chr4_4:72031650-72031669 None:intergenic 20.0%
!! TATTTAACTCGTAATTTCTT+AGG + chr4_4:72031651-72031670 None:intergenic 20.0%
!! AAATACCTTTATATAAAAGG+TGG - chr4_4:72031773-72031792 Msa0700870:intron 20.0%
!!! TAAAAGATCTGTGATTTTAT+AGG - chr4_4:72031832-72031851 Msa0700870:intron 20.0%
!!! AAAAGATCTGTGATTTTATA+GGG - chr4_4:72031833-72031852 Msa0700870:intron 20.0%
!! GTGTCATATATAAAACAAAT+AGG + chr4_4:72032063-72032082 None:intergenic 20.0%
!!! TGGATAATATTTTTCTTCAA+CGG + chr4_4:72032632-72032651 None:intergenic 20.0%
!! GATATAATTACTAAAATGCT+TGG - chr4_4:72032773-72032792 Msa0700870:intron 20.0%
!!! GAAAAAAAAATAATGGATGT+TGG - chr4_4:72033146-72033165 Msa0700870:intron 20.0%
!! CTTAAAACTTCACATATTAA+AGG + chr4_4:72033409-72033428 None:intergenic 20.0%
!!! AATATGTGAAGTTTTAAGTA+TGG - chr4_4:72033411-72033430 Msa0700870:intron 20.0%
!! CATTAGGAATTCAAATTAAA+TGG + chr4_4:72034367-72034386 None:intergenic 20.0%
!! AACAAAGAATATAGGAATTT+GGG + chr4_4:72034503-72034522 None:intergenic 20.0%
! AATATGTGATCTTGACAAAA+GGG - chr4_4:72030279-72030298 Msa0700870:three_prime_UTR 25.0%
! AATTGATGTTGTTATATGGT+GGG - chr4_4:72030327-72030346 Msa0700870:three_prime_UTR 25.0%
! ATAACTTAACAATTGAATGC+AGG - chr4_4:72030610-72030629 Msa0700870:CDS 25.0%
! AATGCAGGAATATAATTAGA+TGG - chr4_4:72030625-72030644 Msa0700870:CDS 25.0%
! AATGAGATAACAAATAACTC+AGG - chr4_4:72030648-72030667 Msa0700870:intron 25.0%
! ATGAGATAACAAATAACTCA+GGG - chr4_4:72030649-72030668 Msa0700870:intron 25.0%
!!! TTGTTTTGATGCATTTACTT+TGG - chr4_4:72031157-72031176 Msa0700870:intron 25.0%
!! TTTCTTTTGTAGAACTCTAA+TGG - chr4_4:72031417-72031436 Msa0700870:CDS 25.0%
!! TTCTTTTGTAGAACTCTAAT+GGG - chr4_4:72031418-72031437 Msa0700870:CDS 25.0%
!! GTCATTGATAATTGATTGAT+AGG - chr4_4:72031538-72031557 Msa0700870:intron 25.0%
!!! AAGCAAATACTATGGTTTTT+TGG + chr4_4:72031877-72031896 None:intergenic 25.0%
! AAAAAACCATAGTATTTGCT+TGG - chr4_4:72031876-72031895 Msa0700870:intron 25.0%
! AATATACCAAGCAAATACTA+TGG + chr4_4:72031885-72031904 None:intergenic 25.0%
! TTTGTTGAATATGCAATTTC+AGG - chr4_4:72031914-72031933 Msa0700870:intron 25.0%
!! TATCATATATGCATACCTTT+TGG + chr4_4:72032018-72032037 None:intergenic 25.0%
! ATTGAAGAGTTAGATATCAA+CGG - chr4_4:72032148-72032167 Msa0700870:CDS 25.0%
!! AATGTGCAACAAATTTTATG+TGG - chr4_4:72032316-72032335 Msa0700870:intron 25.0%
!! ATGTGCAACAAATTTTATGT+GGG - chr4_4:72032317-72032336 Msa0700870:intron 25.0%
!! TTTTCATGTTAGACAAAACT+TGG - chr4_4:72032496-72032515 Msa0700870:CDS 25.0%
! TAAAAGAAATTACCTCAACA+TGG + chr4_4:72032547-72032566 None:intergenic 25.0%
! ATATTGTTATGTAACAGTAC+TGG + chr4_4:72032652-72032671 None:intergenic 25.0%
! TTTCTTCTGCTTACTTTATT+CGG - chr4_4:72032711-72032730 Msa0700870:intron 25.0%
! CTTCTTGAATTATGAAAGAT+TGG - chr4_4:72032888-72032907 Msa0700870:intron 25.0%
!!! TTGTGATTGGTTTTAGAAAA+TGG - chr4_4:72033219-72033238 Msa0700870:intron 25.0%
! GTCAATTCAAATAAGAAAAG+TGG + chr4_4:72033640-72033659 None:intergenic 25.0%
!!! CTTTTGACTTGAATTTTGAA+TGG - chr4_4:72033659-72033678 Msa0700870:intron 25.0%
! AAATTCTTCACTTCAAATCA+CGG + chr4_4:72033845-72033864 None:intergenic 25.0%
! AGTACCAATAAAACAAGTAA+CGG + chr4_4:72034278-72034297 None:intergenic 25.0%
!!! TTGTTTTATTGGTACTTAAG+AGG - chr4_4:72034282-72034301 Msa0700870:CDS 25.0%
! CAACAAAGAATATAGGAATT+TGG + chr4_4:72034504-72034523 None:intergenic 25.0%
! CAAATTCCTATATTCTTTGT+TGG - chr4_4:72034502-72034521 Msa0700870:CDS 25.0%
! ATTCATCCAACAAAGAATAT+AGG + chr4_4:72034511-72034530 None:intergenic 25.0%
!! AATATCAACATCTCTAGAAA+AGG + chr4_4:72034547-72034566 None:intergenic 25.0%
AATGGAACAAGAGAAAAAAG+TGG + chr4_4:72029968-72029987 None:intergenic 30.0%
!!! GATTTTTGAAATGGGATATG+TGG + chr4_4:72030061-72030080 None:intergenic 30.0%
! CTTTTGTCAAGATCACATAT+TGG + chr4_4:72030280-72030299 None:intergenic 30.0%
CAATATGTGATCTTGACAAA+AGG - chr4_4:72030278-72030297 Msa0700870:three_prime_UTR 30.0%
TGGGAATTGATGTTGTTATA+TGG - chr4_4:72030323-72030342 Msa0700870:three_prime_UTR 30.0%
GAATTGATGTTGTTATATGG+TGG - chr4_4:72030326-72030345 Msa0700870:three_prime_UTR 30.0%
!! TATCATGGTTGGTGTTTTAA+TGG - chr4_4:72030454-72030473 Msa0700870:CDS 30.0%
!! GATGTTTTATTGCTATTACG+TGG - chr4_4:72030783-72030802 Msa0700870:intron 30.0%
ATTGGATTTGATGTTTGTGT+CGG + chr4_4:72030874-72030893 None:intergenic 30.0%
!! GTTTTCCATATTTGAAGTGT+CGG - chr4_4:72030989-72031008 Msa0700870:intron 30.0%
TACAAATCTAAACGTGTTCT+CGG + chr4_4:72031025-72031044 None:intergenic 30.0%
TTGTATTGAGGATCAGTATT+TGG + chr4_4:72031273-72031292 None:intergenic 30.0%
!! ATCAATTTCTGGTATGAATG+GGG + chr4_4:72031319-72031338 None:intergenic 30.0%
!! CATCAATTTCTGGTATGAAT+GGG + chr4_4:72031320-72031339 None:intergenic 30.0%
!! TCATCAATTTCTGGTATGAA+TGG + chr4_4:72031321-72031340 None:intergenic 30.0%
GAAACAGAGATATTGCTTAT+GGG - chr4_4:72031364-72031383 Msa0700870:CDS 30.0%
AACTCAAACACATCTGTATA+TGG - chr4_4:72031490-72031509 Msa0700870:intron 30.0%
! AGTCTCCACCTTTTATATAA+AGG + chr4_4:72031781-72031800 None:intergenic 30.0%
! AATATGCAATTTCAGGTATG+AGG - chr4_4:72031921-72031940 Msa0700870:intron 30.0%
!!! ATATGCATACCTTTTGGTTT+TGG + chr4_4:72032012-72032031 None:intergenic 30.0%
TATCTAACTCTTCAATTGAC+AGG + chr4_4:72032144-72032163 None:intergenic 30.0%
GTATATGCATAAAAGATGCT+TGG + chr4_4:72032217-72032236 None:intergenic 30.0%
! AGTTCAGAAGAAATTTGCTT+TGG - chr4_4:72032373-72032392 Msa0700870:CDS 30.0%
!! GCGTAATTGATTTTTCATAC+CGG - chr4_4:72032865-72032884 Msa0700870:intron 30.0%
TCTTTCATAATTCAAGAAGC+CGG + chr4_4:72032887-72032906 None:intergenic 30.0%
!! CATCCATTTTTCTTAGTCTT+GGG - chr4_4:72032955-72032974 Msa0700870:intron 30.0%
TCAACAATTCGACCAAAATA+AGG + chr4_4:72033034-72033053 None:intergenic 30.0%
! AAATGGTTAAAGAAGTATGC+AGG - chr4_4:72033236-72033255 Msa0700870:intron 30.0%
CATGTGATTGCATTTAAACA+TGG - chr4_4:72033342-72033361 Msa0700870:CDS 30.0%
ATACGATTCACATGTATAGT+AGG + chr4_4:72033447-72033466 None:intergenic 30.0%
ATTGCATTTGGTATTTGAAC+AGG - chr4_4:72033938-72033957 Msa0700870:intron 30.0%
AGCTACAACAAGAAATTCAA+TGG - chr4_4:72034095-72034114 Msa0700870:intron 30.0%
AAGAAATTCAATGGTTGTGT+TGG - chr4_4:72034104-72034123 Msa0700870:CDS 30.0%
ATACACACACATAACAAAGT+TGG + chr4_4:72034228-72034247 None:intergenic 30.0%
!!! AAAGCCGTTACTTGTTTTAT+TGG - chr4_4:72034271-72034290 Msa0700870:CDS 30.0%
TATAGCAAGATGTTAGCATT+AGG + chr4_4:72034383-72034402 None:intergenic 30.0%
TATTCTTTGTTGGATGAATG+AGG - chr4_4:72034512-72034531 Msa0700870:CDS 30.0%
ATTCTTTGTTGGATGAATGA+GGG - chr4_4:72034513-72034532 Msa0700870:CDS 30.0%
!! CGGAATTTGCTAATATTACA+GGG + chr4_4:72034601-72034620 None:intergenic 30.0%
CCTGTAATATTAGCAAATTC+CGG - chr4_4:72034599-72034618 Msa0700870:exon 30.0%
!!! TTTTTTACAGGGACTAAAAC+CGG + chr4_4:72034621-72034640 None:intergenic 30.0%
TGGAAGAATCTGATATTACA+GGG + chr4_4:72034658-72034677 None:intergenic 30.0%
! ATATCAGATTCTTCCACTTT+TGG - chr4_4:72034662-72034681 Msa0700870:five_prime_UTR 30.0%
CTTAGGGATAATGAAACTAG+AGG + chr4_4:72029919-72029938 None:intergenic 35.0%
TTGTTCCATTACTTTGCAGA+AGG - chr4_4:72029978-72029997 Msa0700870:three_prime_UTR 35.0%
TGTTCCATTACTTTGCAGAA+GGG - chr4_4:72029979-72029998 Msa0700870:three_prime_UTR 35.0%
ATATGTGGTTCAAGTGCTAT+TGG + chr4_4:72030046-72030065 None:intergenic 35.0%
TCAACACTTCCATTAATTCG+TGG - chr4_4:72030106-72030125 Msa0700870:three_prime_UTR 35.0%
CAACACTTCCATTAATTCGT+GGG - chr4_4:72030107-72030126 Msa0700870:three_prime_UTR 35.0%
CTACTACTGGAATCTGTTAA+TGG + chr4_4:72030175-72030194 None:intergenic 35.0%
! TCTGAACTTGTTTCATCTTC+AGG + chr4_4:72030220-72030239 None:intergenic 35.0%
CAAGTTCAGAGAAATTTGAC+TGG - chr4_4:72030230-72030249 Msa0700870:three_prime_UTR 35.0%
AGATCACATATTGGCATCAA+AGG + chr4_4:72030271-72030290 None:intergenic 35.0%
!! GATAAAGGTGCTAATCTATG+AGG + chr4_4:72030394-72030413 None:intergenic 35.0%
AGATTAGCACCTTTATCTGA+AGG - chr4_4:72030397-72030416 Msa0700870:exon 35.0%
TCAATCCTTCCTTCAGATAA+AGG + chr4_4:72030409-72030428 None:intergenic 35.0%
TGAAGGAAGGATTGATCAAT+GGG - chr4_4:72030414-72030433 Msa0700870:CDS 35.0%
!! CAAATAACTCAGGGTATTGT+AGG - chr4_4:72030658-72030677 Msa0700870:intron 35.0%
TTCTTTCCTTGTGTAGCTAA+TGG - chr4_4:72030831-72030850 Msa0700870:intron 35.0%
CTGAATGTAACTACATGTGT+CGG - chr4_4:72030942-72030961 Msa0700870:intron 35.0%
GCAACTAGACGAAATTTAGT+TGG + chr4_4:72031055-72031074 None:intergenic 35.0%
!! TCAATTTCTGGTATGAATGG+GGG + chr4_4:72031318-72031337 None:intergenic 35.0%
GGAAACAGAGATATTGCTTA+TGG - chr4_4:72031363-72031382 Msa0700870:CDS 35.0%
AACATGCAAGTTACGATCAT+GGG + chr4_4:72031624-72031643 None:intergenic 35.0%
TAACATGCAAGTTACGATCA+TGG + chr4_4:72031625-72031644 None:intergenic 35.0%
CATACTACATATGCACACTA+CGG - chr4_4:72031973-72031992 Msa0700870:intron 35.0%
ATGAACACTCCAAAACCAAA+AGG - chr4_4:72032000-72032019 Msa0700870:intron 35.0%
TATGCATAAAAGATGCTTGG+TGG + chr4_4:72032214-72032233 None:intergenic 35.0%
! TCAGAAGGTGCAAGTTTATT+TGG + chr4_4:72032244-72032263 None:intergenic 35.0%
GTTACCTTAGTTTCATCAGA+AGG + chr4_4:72032259-72032278 None:intergenic 35.0%
ATTTGTATTCCTGTTAGTCC+CGG - chr4_4:72032401-72032420 Msa0700870:CDS 35.0%
CTAACATGAAAAATCCATCG+CGG + chr4_4:72032488-72032507 None:intergenic 35.0%
GATTGAACCAACAAATCAAC+AGG + chr4_4:72032589-72032608 None:intergenic 35.0%
CCAAGACTAAGAAAAATGGA+TGG + chr4_4:72032957-72032976 None:intergenic 35.0%
!! CCATCCATTTTTCTTAGTCT+TGG - chr4_4:72032954-72032973 Msa0700870:intron 35.0%
TCACCCAAGACTAAGAAAAA+TGG + chr4_4:72032961-72032980 None:intergenic 35.0%
!!! GTGAGCAATAGTACTTTTTC+AGG - chr4_4:72032977-72032996 Msa0700870:intron 35.0%
!! TCGTGTTTCCTACCTTATTT+TGG - chr4_4:72033019-72033038 Msa0700870:intron 35.0%
CAATTCGACCAAAATAAGGT+AGG + chr4_4:72033030-72033049 None:intergenic 35.0%
GAATGGAGAGGAAAATATAG+TGG - chr4_4:72033269-72033288 Msa0700870:CDS 35.0%
! TCGCTAGTGCATATCTATTT+TGG - chr4_4:72033504-72033523 Msa0700870:intron 35.0%
! TGTCGTCAATTTTGTATAGC+TGG - chr4_4:72033614-72033633 Msa0700870:intron 35.0%
TTTGGTATTTGAACAGGTAC+TGG - chr4_4:72033944-72033963 Msa0700870:intron 35.0%
AACTCTTACAATTCACCGTA+TGG + chr4_4:72033972-72033991 None:intergenic 35.0%
ATCATATCAGTTGCTTCAGT+TGG - chr4_4:72034039-72034058 Msa0700870:intron 35.0%
TCATATCAGTTGCTTCAGTT+GGG - chr4_4:72034040-72034059 Msa0700870:intron 35.0%
TGGAGATTAATTTCAGCGAA+AGG + chr4_4:72034208-72034227 None:intergenic 35.0%
! AATTGTTTTCCCTTCTGTTG+TGG - chr4_4:72034405-72034424 Msa0700870:CDS 35.0%
TTGGAAAAATCATGCAGATG+AGG - chr4_4:72034458-72034477 Msa0700870:CDS 35.0%
AATATTACAGGGACCAAAAG+CGG + chr4_4:72034590-72034609 None:intergenic 35.0%
!! CCGGAATTTGCTAATATTAC+AGG + chr4_4:72034602-72034621 None:intergenic 35.0%
GTGGAAGAATCTGATATTAC+AGG + chr4_4:72034659-72034678 None:intergenic 35.0%
GTCAAAAGAATCTGCATACA+TGG - chr4_4:72034701-72034720 Msa0700870:five_prime_UTR 35.0%
GATAATGAAACTAGAGGCTC+AGG + chr4_4:72029913-72029932 None:intergenic 40.0%
TGTTCCCTTCTGCAAAGTAA+TGG + chr4_4:72029986-72030005 None:intergenic 40.0%
TTGCAGAAGGGAACAAACAA+TGG - chr4_4:72029991-72030010 Msa0700870:three_prime_UTR 40.0%
! GAAGTGTTCCCACGAATTAA+TGG + chr4_4:72030118-72030137 None:intergenic 40.0%
TGTTAATGGAGAAGGTGACA+AGG + chr4_4:72030161-72030180 None:intergenic 40.0%
CTGGAATCTGTTAATGGAGA+AGG + chr4_4:72030169-72030188 None:intergenic 40.0%
AATTTGACTGGTACTCACAG+TGG - chr4_4:72030242-72030261 Msa0700870:three_prime_UTR 40.0%
ACCTCATGCTAAGAAAGTGA+TGG - chr4_4:72030303-72030322 Msa0700870:three_prime_UTR 40.0%
CCTCATGCTAAGAAAGTGAT+GGG - chr4_4:72030304-72030323 Msa0700870:three_prime_UTR 40.0%
GGGATAGAAATGAGAATGCA+TGG - chr4_4:72030347-72030366 Msa0700870:three_prime_UTR 40.0%
TAGCACCTTTATCTGAAGGA+AGG - chr4_4:72030401-72030420 Msa0700870:exon 40.0%
CTGAAGGAAGGATTGATCAA+TGG - chr4_4:72030413-72030432 Msa0700870:CDS 40.0%
GAAGGAAGGATTGATCAATG+GGG - chr4_4:72030415-72030434 Msa0700870:CDS 40.0%
AGGTTACAGTGTGTGTATCA+TGG - chr4_4:72030439-72030458 Msa0700870:CDS 40.0%
TACAGTGTGTGTATCATGGT+TGG - chr4_4:72030443-72030462 Msa0700870:CDS 40.0%
!!! GGTTGGTGTTTTAATGGATC+AGG - chr4_4:72030460-72030479 Msa0700870:CDS 40.0%
TGATTGCAAGTTCATTCCTC+AGG - chr4_4:72030483-72030502 Msa0700870:CDS 40.0%
TTCTGTCCATTAGCTACACA+AGG + chr4_4:72030840-72030859 None:intergenic 40.0%
CAGCATGTAAGTGTCAGTAT+TGG + chr4_4:72030892-72030911 None:intergenic 40.0%
!! TAGCACCGACACTTCAAATA+TGG + chr4_4:72030997-72031016 None:intergenic 40.0%
!!! AGCAGCTACACATGCTTTTT+TGG + chr4_4:72031211-72031230 None:intergenic 40.0%
TACCATTCTGCACAGTACTT+GGG + chr4_4:72031236-72031255 None:intergenic 40.0%
ATACCATTCTGCACAGTACT+TGG + chr4_4:72031237-72031256 None:intergenic 40.0%
! AGAATGGTATCGTGTGGTTT+TGG - chr4_4:72031247-72031266 Msa0700870:intron 40.0%
AAGGACGGATCATCAATTTC+TGG + chr4_4:72031330-72031349 None:intergenic 40.0%
GTTTCCCATTACGCTAGTAA+AGG + chr4_4:72031349-72031368 None:intergenic 40.0%
CTCCACATTTGACAAAAGCA+TGG - chr4_4:72031738-72031757 Msa0700870:intron 40.0%
! CACCATGCTTTTGTCAAATG+TGG + chr4_4:72031743-72031762 None:intergenic 40.0%
! GGTTCTGATTGAAAACCTCA+TGG - chr4_4:72031942-72031961 Msa0700870:intron 40.0%
GTGCATATGTAGTATGTGCA+GGG + chr4_4:72031969-72031988 None:intergenic 40.0%
TGTGCATATGTAGTATGTGC+AGG + chr4_4:72031970-72031989 None:intergenic 40.0%
ACAGTGAAAGCTGATAGAGA+AGG - chr4_4:72032103-72032122 Msa0700870:CDS 40.0%
TCTTCAATTGACAGGTCAAG+TGG + chr4_4:72032136-72032155 None:intergenic 40.0%
AACGGTTTCACAGCAAATCA+GGG - chr4_4:72032166-72032185 Msa0700870:CDS 40.0%
TGCACCTTCTGATGAAACTA+AGG - chr4_4:72032252-72032271 Msa0700870:intron 40.0%
TTGACAAAATTGTACCGCGA+TGG - chr4_4:72032471-72032490 Msa0700870:CDS 40.0%
TACGTATCTTCTCCATGTTG+AGG - chr4_4:72032532-72032551 Msa0700870:intron 40.0%
!! CATTGGTCCTGTTGATTTGT+TGG - chr4_4:72032579-72032598 Msa0700870:intron 40.0%
TTATGTGCACAATAGCTGCT+CGG - chr4_4:72032799-72032818 Msa0700870:intron 40.0%
AAACATTGCCTTCTGCCAAT+TGG + chr4_4:72033177-72033196 None:intergenic 40.0%
!! ATGCAGGTGATCAAGTTGAA+TGG - chr4_4:72033252-72033271 Msa0700870:CDS 40.0%
CTGTCCATAAGTTGTTCTCT+GGG + chr4_4:72033314-72033333 None:intergenic 40.0%
GAATCACTACCTAGTGTAGT+CGG - chr4_4:72033583-72033602 Msa0700870:intron 40.0%
AAAAAGAAGCCGACTACACT+AGG + chr4_4:72033595-72033614 None:intergenic 40.0%
AGCCTATAAGAGTCTCAATG+TGG - chr4_4:72033999-72034018 Msa0700870:intron 40.0%
CACCACATTGAGACTCTTAT+AGG + chr4_4:72034004-72034023 None:intergenic 40.0%
CTATAAGAGTCTCAATGTGG+TGG - chr4_4:72034002-72034021 Msa0700870:intron 40.0%
ATTGTTGCCACAATGAAGCA+GGG - chr4_4:72034063-72034082 Msa0700870:intron 40.0%
ATTAATTTCAGCGAAAGGCG+TGG + chr4_4:72034203-72034222 None:intergenic 40.0%
TCACATGTTCCACAACAGAA+GGG + chr4_4:72034417-72034436 None:intergenic 40.0%
TTCACATGTTCCACAACAGA+AGG + chr4_4:72034418-72034437 None:intergenic 40.0%
TTCTGTTGTGGAACATGTGA+AGG - chr4_4:72034417-72034436 Msa0700870:CDS 40.0%
TCTGTTGTGGAACATGTGAA+GGG - chr4_4:72034418-72034437 Msa0700870:CDS 40.0%
!! GGGATGTATGTTGCTTTGTT+TGG - chr4_4:72034439-72034458 Msa0700870:CDS 40.0%
!! CTTTGGGTTAATACCGCTTT+TGG - chr4_4:72034574-72034593 Msa0700870:CDS 40.0%
! CTTTTGACGTGGTGAAATGA+GGG + chr4_4:72034689-72034708 None:intergenic 40.0%
! TCTTTTGACGTGGTGAAATG+AGG + chr4_4:72034690-72034709 None:intergenic 40.0%
! GTATGCAGATTCTTTTGACG+TGG + chr4_4:72034700-72034719 None:intergenic 40.0%
CACGTGAAGGTTACTACTAC+TGG + chr4_4:72030188-72030207 None:intergenic 45.0%
CAGTAGTAGTAACCTTCACG+TGG - chr4_4:72030186-72030205 Msa0700870:three_prime_UTR 45.0%
CCCATCACTTTCTTAGCATG+AGG + chr4_4:72030307-72030326 None:intergenic 45.0%
GAAGGATTGATCAATGGGGT+AGG - chr4_4:72030419-72030438 Msa0700870:CDS 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG + chr4_4:72030863-72030882 None:intergenic 45.0%
! TACCCAAGTACTGTGCAGAA+TGG - chr4_4:72031231-72031250 Msa0700870:intron 45.0%
TCCGTCCTTTACTAGCGTAA+TGG - chr4_4:72031341-72031360 Msa0700870:CDS 45.0%
CCCATTACGCTAGTAAAGGA+CGG + chr4_4:72031345-72031364 None:intergenic 45.0%
CCGTCCTTTACTAGCGTAAT+GGG - chr4_4:72031342-72031361 Msa0700870:CDS 45.0%
GTGAAAGCTGATAGAGAAGG+AGG - chr4_4:72032106-72032125 Msa0700870:CDS 45.0%
CAACGGTTTCACAGCAAATC+AGG - chr4_4:72032165-72032184 Msa0700870:CDS 45.0%
GTTTCACAGCAAATCAGGGT+TGG - chr4_4:72032170-72032189 Msa0700870:CDS 45.0%
TGGTGCTTCCCAAGAAACTT+TGG - chr4_4:72032440-72032459 Msa0700870:CDS 45.0%
GGTGCTTCCCAAGAAACTTT+GGG - chr4_4:72032441-72032460 Msa0700870:CDS 45.0%
TCCACAGCCCAAAGTTTCTT+GGG + chr4_4:72032451-72032470 None:intergenic 45.0%
ATCCACAGCCCAAAGTTTCT+TGG + chr4_4:72032452-72032471 None:intergenic 45.0%
TGGATGTTGGTCAAGCCAAT+TGG - chr4_4:72033159-72033178 Msa0700870:intron 45.0%
GGCAATGTTTGTGCCAACAA+AGG - chr4_4:72033187-72033206 Msa0700870:intron 45.0%
!! ACAAGAGCATCTGCCTTTGT+TGG + chr4_4:72033203-72033222 None:intergenic 45.0%
AAGGCAGATGCTCTTGTGAT+TGG - chr4_4:72033206-72033225 Msa0700870:intron 45.0%
!! GGTGATCAAGTTGAATGGAG+AGG - chr4_4:72033257-72033276 Msa0700870:CDS 45.0%
ACCTCCCAGAGAACAACTTA+TGG - chr4_4:72033307-72033326 Msa0700870:CDS 45.0%
TCCATAAGTTGTTCTCTGGG+AGG + chr4_4:72033311-72033330 None:intergenic 45.0%
CCTGTCCATAAGTTGTTCTC+TGG + chr4_4:72033315-72033334 None:intergenic 45.0%
CCAGAGAACAACTTATGGAC+AGG - chr4_4:72033312-72033331 Msa0700870:CDS 45.0%
GATTGTTGCCACAATGAAGC+AGG - chr4_4:72034062-72034081 Msa0700870:intron 45.0%
TGCTTTCATTCGCGTTGTCA+CGG - chr4_4:72034130-72034149 Msa0700870:CDS 45.0%
CGTGGTTGTAGTCATGGTAA+CGG + chr4_4:72034185-72034204 None:intergenic 45.0%
! TTGGTACTTAAGAGGAGCGT+TGG - chr4_4:72034290-72034309 Msa0700870:CDS 45.0%
CTGTTGTGGAACATGTGAAG+GGG - chr4_4:72034419-72034438 Msa0700870:CDS 45.0%
GTGAAATGAGGGACCAAAAG+TGG + chr4_4:72034678-72034697 None:intergenic 45.0%
!!! AAAGTTTTTTTTTTAATAAA+AGG + chr4_4:72032926-72032945 None:intergenic 5.0%
!! ATTAAAAAAAAAACTTTAAT+AGG - chr4_4:72032929-72032948 Msa0700870:intron 5.0%
!!! TTTTAATTATTTATTTTGAT+AGG - chr4_4:72033124-72033143 Msa0700870:intron 5.0%
CAGGTTCATCATCCACGTGA+AGG + chr4_4:72030201-72030220 None:intergenic 50.0%
GACTCGAAGGGAGTAGTTAC+CGG + chr4_4:72030526-72030545 None:intergenic 50.0%
GTCTTCGAAAGCGACTCGAA+GGG + chr4_4:72030538-72030557 None:intergenic 50.0%
TGTCTTCGAAAGCGACTCGA+AGG + chr4_4:72030539-72030558 None:intergenic 50.0%
CTGTGCAGAATGGTATCGTG+TGG - chr4_4:72031241-72031260 Msa0700870:intron 50.0%
TAGTATGTGCAGGGTCCATG+AGG + chr4_4:72031960-72031979 None:intergenic 50.0%
CAAATCAGTCTGCTGTTGCC+GGG + chr4_4:72032422-72032441 None:intergenic 50.0%
CCAAATCAGTCTGCTGTTGC+CGG + chr4_4:72032423-72032442 None:intergenic 50.0%
TCCCAAGAAACTTTGGGCTG+TGG - chr4_4:72032447-72032466 Msa0700870:CDS 50.0%
TGGTCAAGCCAATTGGCAGA+AGG - chr4_4:72033166-72033185 Msa0700870:intron 50.0%
! AGTTGTTCTCTGGGAGGTGT+AGG + chr4_4:72033305-72033324 None:intergenic 50.0%
!! GAACAGGTACTGGAGCCATA+CGG - chr4_4:72033954-72033973 Msa0700870:intron 50.0%
AACCACACCCTGCTTCATTG+TGG + chr4_4:72034073-72034092 None:intergenic 50.0%
TTTCATTCGCGTTGTCACGG+TGG - chr4_4:72034133-72034152 Msa0700870:CDS 50.0%
! GAAAGGCGTGGTTGTAGTCA+TGG + chr4_4:72034191-72034210 None:intergenic 50.0%
!! GGAGCGTTGGAACATTTGTG+TGG - chr4_4:72034303-72034322 Msa0700870:CDS 50.0%
ATTCCTCAGGCACCTCCTGA+CGG - chr4_4:72030496-72030515 Msa0700870:CDS 55.0%
TCGAAGGGAGTAGTTACCGG+AGG + chr4_4:72030523-72030542 None:intergenic 55.0%
CCGGCAACAGCAGACTGATT+TGG - chr4_4:72032420-72032439 Msa0700870:CDS 55.0%
GTGCACAATAGCTGCTCGGT+TGG - chr4_4:72032803-72032822 Msa0700870:intron 55.0%
! TCTGGGAGGTGTAGGAGGAA+GGG + chr4_4:72033297-72033316 None:intergenic 55.0%
! TGTTCTCTGGGAGGTGTAGG+AGG + chr4_4:72033302-72033321 None:intergenic 55.0%
TGCCACAATGAAGCAGGGTG+TGG - chr4_4:72034068-72034087 Msa0700870:intron 55.0%
GTAGTTACCGGAGGTCCGTC+AGG + chr4_4:72030514-72030533 None:intergenic 60.0%
CTGCTGTTGCCGGGACTAAC+AGG + chr4_4:72032413-72032432 None:intergenic 60.0%
! CTCTGGGAGGTGTAGGAGGA+AGG + chr4_4:72033298-72033317 None:intergenic 60.0%
GTTACCGGAGGTCCGTCAGG+AGG + chr4_4:72030511-72030530 None:intergenic 65.0%
!! GGTCCGTCAGGAGGTGCCTG+AGG + chr4_4:72030502-72030521 None:intergenic 70.0%
! GGCACCTCCTGACGGACCTC+CGG - chr4_4:72030504-72030523 Msa0700870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72029897 72034728 72029897 ID=Msa0700870;Name=Msa0700870
chr4_4 mRNA 72029897 72034728 72029897 ID=Msa0700870-mRNA-1;Parent=Msa0700870;Name=Msa0700870-mRNA-1;_AED=0.32;_eAED=0.32;_QI=113|1|1|1|1|1|7|513|529
chr4_4 exon 72029897 72030665 72029897 ID=Msa0700870-mRNA-1:exon:21980;Parent=Msa0700870-mRNA-1
chr4_4 exon 72031292 72031479 72031292 ID=Msa0700870-mRNA-1:exon:21979;Parent=Msa0700870-mRNA-1
chr4_4 exon 72032072 72032260 72032072 ID=Msa0700870-mRNA-1:exon:21978;Parent=Msa0700870-mRNA-1
chr4_4 exon 72032352 72032518 72032352 ID=Msa0700870-mRNA-1:exon:21977;Parent=Msa0700870-mRNA-1
chr4_4 exon 72032604 72032689 72032604 ID=Msa0700870-mRNA-1:exon:21976;Parent=Msa0700870-mRNA-1
chr4_4 exon 72033240 72033427 72033240 ID=Msa0700870-mRNA-1:exon:21975;Parent=Msa0700870-mRNA-1
chr4_4 exon 72034100 72034728 72034100 ID=Msa0700870-mRNA-1:exon:21974;Parent=Msa0700870-mRNA-1
chr4_4 five_prime_UTR 72034616 72034728 72034616 ID=Msa0700870-mRNA-1:five_prime_utr;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72034100 72034615 72034100 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72033240 72033427 72033240 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72032604 72032689 72032604 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72032352 72032518 72032352 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72032072 72032260 72032072 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72031292 72031479 72031292 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 CDS 72030410 72030665 72030410 ID=Msa0700870-mRNA-1:cds;Parent=Msa0700870-mRNA-1
chr4_4 three_prime_UTR 72029897 72030409 72029897 ID=Msa0700870-mRNA-1:three_prime_utr;Parent=Msa0700870-mRNA-1
Gene Sequence

>Msa0700870

ATGGAAGCTTTTTCTGTTAGTTCACTTCACATACCAATAGCACTTGAACCACATATCCCATTTCAAAAATCAATATTTTTGAACTCACAATTGCATTCAACACTTCCATTAATTCGTGGGAACACTTCAAAATTCAAGCTTTTCACTGCCTTGTCACCTTCTCCATTAACAGATTCCAGTAGTAGTAACCTTCACGTGGATGATGAACCTGAAGATGAAACAAGTTCAGAGAAATTTGACTGGTACTCACAGTGGTATCCTTTGATGCCAATATGTGATCTTGACAAAAGGGCACCTCATGCTAAGAAAGTGATGGGAATTGATGTTGTTATATGGTGGGATAGAAATGAGAATGCATGGCAAGTTTTTGATGATGCTTGTCCTCATAGATTAGCACCTTTATCTGAAGGAAGGATTGATCAATGGGGTAGGTTACAGTGTGTGTATCATGGTTGGTGTTTTAATGGATCAGGTGATTGCAAGTTCATTCCTCAGGCACCTCCTGACGGACCTCCGATTCATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGGTATCGTGTGGTTTTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGGAAAACACCCCCATTCATACCAGAAATTGATGATCCGTCCTTTACTAGCGTAATGGGAAACAGAGATATTGCTTATGGGTATGAGGTTCTGATTGAAAACCTCATGGACCCTGCACATACTACATATGCACACTACGGAATAATGAACACTCCAAAACCAAAAGTGAAAGCTGATAGAGAAGGAGGAAGACCACTTGACCTGTCAATTGAAGAGTTAGATATCAACGGTTTCACAGCAAATCAGGGTTGGAGCAAAAGCAAGTTTATGCCACCAAGCATCTTTTATGCATATACTGATCCAAATAAACTTGCACCTTCTGATGAAACTAAGAATTCATCAGTTCAGAAGAAATTTGCTTTGGTCTTTATTTGTATTCCTGTTAGTCCCGGCAACAGCAGACTGATTTGGTGCTTCCCAAGAAACTTTGGGCTGTGGATTGACAAAATTGTACCGCGATGGATTTTTCATGTTAGACAAAACTTGGTTCTAGATTCAGATACGTATCTTCTCCATGTTGAGGAAAAAAAAATAATGGATGTTGGTCAAGCCAATTGGCAGAAGGCAATGTTTGTGCCAACAAAGGCAGATGCTCTTGTGATTGGTTTTAGAAAATGGTTAAAGAAGTATGCAGGTGATCAAGTTGAATGGAGAGGAAAATATAGTGGAGCCCTTCCTCCTACACCTCCCAGAGAACAACTTATGGACAGGTACTGGAGCCATACGGTGAATTGTAAGAGTTGCAATTTAGCCTATAAGAGTCTCAATGTGGTGGAAGTGATGCTGCAGATCATATCAGTTGCTTCAGTTGGGATTGTTGCCACAATGAAGCAGGGTGTGGTTTCAGCTACAACAAGAAATTCAATGGTTGTGTTGGCAGTGCTTTCATTCGCGTTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTACCATGACTACAACCACGCCTTTCGCTGA

Protein sequence

>Msa0700870

MEAFSVSSLHIPIALEPHIPFQKSIFLNSQLHSTLPLIRGNTSKFKLFTALSPSPLTDSSSSNLHVDDEPEDETSSEKFDWYSQWYPLMPICDLDKRAPHAKKVMGIDVVIWWDRNENAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPIHTSKKACVAAYPSTVQNGIVWFWPNTDPQYKDIITRKTPPFIPEIDDPSFTSVMGNRDIAYGYEVLIENLMDPAHTTYAHYGIMNTPKPKVKADREGGRPLDLSIEELDINGFTANQGWSKSKFMPPSIFYAYTDPNKLAPSDETKNSSVQKKFALVFICIPVSPGNSRLIWCFPRNFGLWIDKIVPRWIFHVRQNLVLDSDTYLLHVEEKKIMDVGQANWQKAMFVPTKADALVIGFRKWLKKYAGDQVEWRGKYSGALPPTPPREQLMDRYWSHTVNCKSCNLAYKSLNVVEVMLQIISVASVGIVATMKQGVVSATTRNSMVVLAVLSFALSRWLAHFIYKNFRYHDYNHAFR*