AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508620 MtrunA17_Chr3g0113101 99.483 387 2 0 1 387 1 387 0.0 790
Msa0508620 MtrunA17_Chr2g0278581 31.429 280 171 9 116 379 67 341 2.03e-23 99.8
Msa0508620 MtrunA17_Chr7g0241071 28.720 289 171 9 115 371 125 410 2.11e-20 92.0
Msa0508620 MtrunA17_Chr6g0463901 28.253 269 165 8 116 364 67 327 8.84e-19 86.7
Msa0508620 MtrunA17_Chr4g0049821 27.113 284 166 14 120 378 124 391 5.60e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508620 AT3G55800.1 79.695 394 72 3 1 387 1 393 0.0 645
Msa0508620 AT1G43670.1 31.061 264 164 5 116 364 67 327 8.06e-23 98.6
Msa0508620 AT5G64380.1 26.101 318 182 14 86 368 90 389 5.86e-15 76.3

Find 127 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3_4:-56713286 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3_4:+56710959 Msa0508620:CDS
ATTTAGTTCTAGTCATAAAT+AGG 0.198228 3_4:-56713535 None:intergenic
ACACAATGTGTTAACTCTTT+TGG 0.201562 3_4:+56711352 Msa0508620:CDS
GTAAATTCCGAATTGCTTAA+TGG 0.211059 3_4:-56713612 None:intergenic
TCACTCCCTCTTCTGCCTTC+AGG 0.230507 3_4:+56710764 Msa0508620:CDS
CTTGTATTATGGTATGTATT+TGG 0.252537 3_4:-56713661 None:intergenic
GTCATAACCAAATGCGAAAT+TGG 0.262915 3_4:+56711043 Msa0508620:CDS
CAATTGATATTTCAGGAAAA+TGG 0.276601 3_4:+56712721 Msa0508620:intron
CACTTATGTACTTGCACTTA+AGG 0.290701 3_4:+56712510 Msa0508620:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3_4:+56713326 Msa0508620:CDS
GTCAAAGAGACTCATGAAAT+TGG 0.322823 3_4:+56712750 Msa0508620:CDS
CACTCCCTCTTCTGCCTTCA+GGG 0.336824 3_4:+56710765 Msa0508620:CDS
TTCACAGTAGGCACCATCTT+TGG 0.339734 3_4:+56712406 Msa0508620:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3_4:+56712361 Msa0508620:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3_4:+56713348 Msa0508620:CDS
AACGTGGCTCTCAAATTTCC+AGG 0.345781 3_4:-56712792 None:intergenic
ACTGTCGCCAATTTCGCATT+TGG 0.348976 3_4:-56711050 None:intergenic
ATCTAAGCATCTAGACATTA+AGG 0.350021 3_4:+56713582 Msa0508620:three_prime_UTR
TTGTTTGAGGTAGCTCCATT+AGG 0.352175 3_4:+56713224 Msa0508620:CDS
GAATTTACACAGGTTGAGTT+TGG 0.359303 3_4:+56713627 Msa0508620:three_prime_UTR
TTTAGTTCTAGTCATAAATA+GGG 0.364278 3_4:-56713534 None:intergenic
AGAGGGAGTGATGGAGGGTA+GGG 0.378558 3_4:-56710752 None:intergenic
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3_4:-56713197 None:intergenic
GCAACTTGCAGTGGATATTC+TGG 0.382217 3_4:+56711381 Msa0508620:CDS
AAGAGGGAGTGATGGAGGGT+AGG 0.386970 3_4:-56710753 None:intergenic
CTTCCTTCCATTAAGCAATT+CGG 0.389996 3_4:+56713605 Msa0508620:three_prime_UTR
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3_4:+56713152 Msa0508620:intron
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3_4:+56713151 Msa0508620:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3_4:-56712211 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3_4:+56712442 Msa0508620:CDS
GATGGAGGGTAGGGAGTGTT+TGG 0.409911 3_4:-56710743 None:intergenic
AGTTACAAACTAGCAAATAT+TGG 0.411486 3_4:+56710409 Msa0508620:five_prime_UTR
AAATATAATTTATGTTCAAA+TGG 0.412027 3_4:+56713554 Msa0508620:three_prime_UTR
GGCAGAAGAGGGAGTGATGG+AGG 0.413966 3_4:-56710758 None:intergenic
GCAAGTACATAAGTGGTTCT+AGG 0.415518 3_4:-56712502 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3_4:-56712235 None:intergenic
ATGCGAAATTGGCGACAGTT+TGG 0.435500 3_4:+56711054 Msa0508620:CDS
AAAATTTCAAAATGAAATGT+AGG 0.437363 3_4:-56713445 None:intergenic
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3_4:-56713204 None:intergenic
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3_4:+56711267 Msa0508620:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3_4:+56712468 Msa0508620:CDS
AGGTTTGAAGAAACATTGTA+TGG 0.459432 3_4:+56713368 Msa0508620:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3_4:+56711249 Msa0508620:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3_4:+56712223 Msa0508620:CDS
GTCTTGTATAGGAAGAGATA+TGG 0.469412 3_4:-56710449 None:intergenic
TCAAAGGCGACACCGGATAA+GGG 0.472586 3_4:+56711250 Msa0508620:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3_4:-56711262 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3_4:-56712164 None:intergenic
GAATTTCTACTTCTTGATGA+AGG 0.478553 3_4:+56712550 Msa0508620:CDS
GAAGGCAGAAGAGGGAGTGA+TGG 0.480102 3_4:-56710761 None:intergenic
TTGCATCACAAATATTTATG+TGG 0.480738 3_4:-56710482 None:intergenic
GCTTAAGCACTTGCTCCAAC+AGG 0.481475 3_4:-56713416 None:intergenic
GGACTCTTGATTGAAAATGC+TGG 0.481565 3_4:+56713245 Msa0508620:CDS
AGTAGAAATTCATGAGTGCC+GGG 0.495020 3_4:-56712538 None:intergenic
AAGTAGAAATTCATGAGTGC+CGG 0.495327 3_4:-56712539 None:intergenic
CTCAAACAACAGTCTCAACT+TGG 0.497480 3_4:-56713210 None:intergenic
AACATCCGGCACCATTCCTC+CGG 0.502390 3_4:-56712970 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3_4:+56712413 Msa0508620:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3_4:-56712509 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3_4:+56712469 Msa0508620:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3_4:+56712418 Msa0508620:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3_4:+56711260 Msa0508620:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3_4:+56713211 Msa0508620:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3_4:+56712433 Msa0508620:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3_4:-56712419 None:intergenic
GCAGAAGAGGGAGTGATGGA+GGG 0.545840 3_4:-56710757 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3_4:+56711234 Msa0508620:intron
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3_4:+56711276 Msa0508620:CDS
ATATTTATGTGGTTGTGCTA+TGG 0.554917 3_4:-56710471 None:intergenic
CTCAAGGGTGGTGTACCTGT+TGG 0.557393 3_4:+56713401 Msa0508620:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3_4:+56712520 Msa0508620:CDS
ATTCCGAATTGCTTAATGGA+AGG 0.558767 3_4:-56713608 None:intergenic
AAAAGAACCTGGTTAACATC+CGG 0.559892 3_4:-56712984 None:intergenic
GAAGGAAAACTATTCTCCCC+TGG 0.564395 3_4:+56712774 Msa0508620:CDS
AATGGTGCCGGATGTTAACC+AGG 0.565507 3_4:+56712977 Msa0508620:CDS
AAACATTGTATGGTTCATCA+AGG 0.565959 3_4:+56713378 Msa0508620:CDS
GTATGGTTCATCAAGGCTCA+AGG 0.566669 3_4:+56713385 Msa0508620:CDS
GTTGTGCTATGGTCTTGTAT+AGG 0.567533 3_4:-56710460 None:intergenic
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3_4:+56712207 Msa0508620:CDS
GCTGGAGGTTACAGCAGTGA+TGG 0.571612 3_4:+56713263 Msa0508620:CDS
ATTGAGATACACCGGAGGAA+TGG 0.572312 3_4:+56712959 Msa0508620:CDS
ATGTCTAGATGCTTAGATGT+TGG 0.572500 3_4:-56713577 None:intergenic
CCATAAATCTGTGCTAGACA+AGG 0.577457 3_4:+56713286 Msa0508620:CDS
TGACAATGCAGATTATGCTA+AGG 0.577947 3_4:+56712815 Msa0508620:CDS
ACATGCTATACTAGTTTCCA+TGG 0.581877 3_4:-56710686 None:intergenic
TATTATTGTGCATACCCTGA+AGG 0.582360 3_4:-56710779 None:intergenic
GTGGCATGTGATGAATAGAT+AGG 0.582573 3_4:-56710537 None:intergenic
TTGTATAGGAAGAGATATGG+TGG 0.585414 3_4:-56710446 None:intergenic
GTAGACACAAATTTCACAGT+AGG 0.585426 3_4:+56712394 Msa0508620:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3_4:+56711372 Msa0508620:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3_4:+56712208 Msa0508620:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3_4:+56711243 Msa0508620:CDS
ACTACGAAGAAAAGCACCAC+TGG 0.593568 3_4:-56710713 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3_4:-56712210 None:intergenic
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3_4:+56711328 Msa0508620:CDS
ATATAGCAATTATAGATATG+TGG 0.597775 3_4:-56710582 None:intergenic
CATACCCTGAAGGCAGAAGA+GGG 0.598076 3_4:-56710769 None:intergenic
GAGACTCATGAAATTGGTGA+AGG 0.599892 3_4:+56712756 Msa0508620:CDS
TGTATAGGAAGAGATATGGT+GGG 0.601117 3_4:-56710445 None:intergenic
TATGGTTCATCAAGGCTCAA+GGG 0.610673 3_4:+56713386 Msa0508620:CDS
CTCTTGATTGAAAATGCTGG+AGG 0.611258 3_4:+56713248 Msa0508620:CDS
ACGTGGCTCTCAAATTTCCA+GGG 0.611538 3_4:-56712791 None:intergenic
GCATACCCTGAAGGCAGAAG+AGG 0.613244 3_4:-56710770 None:intergenic
AAGCAATTCGGAATTTACAC+AGG 0.613950 3_4:+56713617 Msa0508620:three_prime_UTR
ATACACCGGAGGAATGGTGC+CGG 0.622946 3_4:+56712965 Msa0508620:CDS
TGCTTATGGATCAAAGAATG+AGG 0.624161 3_4:+56713340 Msa0508620:CDS
AAATACACATTGAGATACAC+CGG 0.625848 3_4:+56712951 Msa0508620:CDS
GTATAGGAAGAGATATGGTG+GGG 0.629809 3_4:-56710444 None:intergenic
ACTCCAATCAACTTATCACC+AGG 0.643314 3_4:-56712436 None:intergenic
AGTATAGCATGTTACTCCAG+TGG 0.647366 3_4:+56710697 Msa0508620:CDS
ACTATGCTTGAACCATCAAG+AGG 0.650576 3_4:-56712373 None:intergenic
TATAGGAAGAGATATGGTGG+GGG 0.657342 3_4:-56710443 None:intergenic
TCTATTCATCACATGCCACA+TGG 0.658867 3_4:+56710541 Msa0508620:five_prime_UTR
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3_4:+56711277 Msa0508620:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3_4:+56711325 Msa0508620:CDS
GTATGTATTTGGACTACACA+TGG 0.677028 3_4:-56713650 None:intergenic
ATAATCTGCATTGTCAAACG+TGG 0.681581 3_4:-56712808 None:intergenic
CTATGCTTGAACCATCAAGA+GGG 0.684004 3_4:-56712372 None:intergenic
GGTTCATCAAGGCTCAAGGG+TGG 0.686247 3_4:+56713389 Msa0508620:CDS
ATAGGAAGAGATATGGTGGG+GGG 0.687951 3_4:-56710442 None:intergenic
TAGGAAGAGATATGGTGGGG+GGG 0.691506 3_4:-56710441 None:intergenic
GTAGAAATTCATGAGTGCCG+GGG 0.695072 3_4:-56712537 None:intergenic
CGTGGCTCTCAAATTTCCAG+GGG 0.699176 3_4:-56712790 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3_4:+56712211 Msa0508620:CDS
TACACATTGAGATACACCGG+AGG 0.744654 3_4:+56712954 Msa0508620:CDS
ATTATGCATGTAGTGCCATG+TGG 0.745934 3_4:-56710556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATGATTAATTTAT+TGG + chr3_4:56710819-56710838 Msa0508620:intron 10.0%
!! AAACAATTAAAATTTATGAA+AGG + chr3_4:56711793-56711812 Msa0508620:intron 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG - chr3_4:56711889-56711908 None:intergenic 10.0%
!! AAATATAATTTATGTTCAAA+TGG + chr3_4:56713554-56713573 Msa0508620:three_prime_UTR 10.0%
!! AGAGAAAATAAAATTTAACA+AGG - chr3_4:56711752-56711771 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG + chr3_4:56711895-56711914 Msa0508620:intron 15.0%
!!! ACACAATTTAATTTTAATTG+TGG - chr3_4:56712033-56712052 None:intergenic 15.0%
!! GACCAAAAAAAAATAAAAAA+TGG + chr3_4:56712087-56712106 Msa0508620:intron 15.0%
!!! TGCCATTTTTTATTTTTTTT+TGG - chr3_4:56712092-56712111 None:intergenic 15.0%
!!! ATATATAATTTTTGAGTGTA+TGG + chr3_4:56712300-56712319 Msa0508620:intron 15.0%
!! AAAATTTCAAAATGAAATGT+AGG - chr3_4:56713448-56713467 None:intergenic 15.0%
!! TTTAAAAACTTCTTGTATTA+TGG - chr3_4:56713675-56713694 None:intergenic 15.0%
!! ATATAGCAATTATAGATATG+TGG - chr3_4:56710585-56710604 None:intergenic 20.0%
!! AATAAAATTTAACAAGGAAG+TGG - chr3_4:56711746-56711765 None:intergenic 20.0%
!!! TGTTTCTATAAATGAACTTT+AGG - chr3_4:56711778-56711797 None:intergenic 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG - chr3_4:56712264-56712283 None:intergenic 20.0%
!! AGATTTATGAGATTCTAATA+AGG + chr3_4:56712589-56712608 Msa0508620:intron 20.0%
!! AATTATCCAATTGATATTTC+AGG + chr3_4:56712714-56712733 Msa0508620:intron 20.0%
!!! AGTGAAGTAATTTTATATCA+AGG - chr3_4:56713043-56713062 None:intergenic 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG + chr3_4:56713152-56713171 Msa0508620:intron 20.0%
!!! TTTAGTTCTAGTCATAAATA+GGG - chr3_4:56713537-56713556 None:intergenic 20.0%
!!! ATTTAGTTCTAGTCATAAAT+AGG - chr3_4:56713538-56713557 None:intergenic 20.0%
! AGTTACAAACTAGCAAATAT+TGG + chr3_4:56710409-56710428 Msa0508620:five_prime_UTR 25.0%
! TTGCATCACAAATATTTATG+TGG - chr3_4:56710485-56710504 None:intergenic 25.0%
!!! TATGTTGAAAAGTTTTGATG+AGG - chr3_4:56710652-56710671 None:intergenic 25.0%
!!! ATAATTTTTTTTTGCAGCCA+TGG + chr3_4:56710669-56710688 Msa0508620:exon 25.0%
! TTGAAATCAAGCTCTTTATT+TGG + chr3_4:56710959-56710978 Msa0508620:CDS 25.0%
!! AATCAACACTTAAGTTTTCA+AGG + chr3_4:56711005-56711024 Msa0508620:CDS 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG + chr3_4:56711006-56711025 Msa0508620:CDS 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG - chr3_4:56711189-56711208 None:intergenic 25.0%
! TGTTGATGTTTGTATATTGT+AGG + chr3_4:56711216-56711235 Msa0508620:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG - chr3_4:56711466-56711485 None:intergenic 25.0%
!!! AAACATGTTTTGTTATGATG+AGG + chr3_4:56711816-56711835 Msa0508620:intron 25.0%
!! GATATTGCATTTTATATGCA+GGG + chr3_4:56711966-56711985 Msa0508620:intron 25.0%
!! ATATTGCATTTTATATGCAG+GGG + chr3_4:56711967-56711986 Msa0508620:intron 25.0%
!!! TAATTTTAATTGTGGAGAAG+TGG - chr3_4:56712025-56712044 None:intergenic 25.0%
! ATAGACCAAAAAAATGTTTG+AGG + chr3_4:56712667-56712686 Msa0508620:intron 25.0%
!!! GATTTCCTCAAACATTTTTT+TGG - chr3_4:56712675-56712694 None:intergenic 25.0%
!! CATTTTCCTGAAATATCAAT+TGG - chr3_4:56712723-56712742 None:intergenic 25.0%
! CAATTGATATTTCAGGAAAA+TGG + chr3_4:56712721-56712740 Msa0508620:intron 25.0%
! GCAGATTATTGTAAAAGAAA+AGG + chr3_4:56713151-56713170 Msa0508620:intron 25.0%
! CTTGTATTATGGTATGTATT+TGG - chr3_4:56713664-56713683 None:intergenic 25.0%
ATATTTATGTGGTTGTGCTA+TGG - chr3_4:56710474-56710493 None:intergenic 30.0%
! GCTAATGAAACTGTATTTTG+AGG - chr3_4:56710518-56710537 None:intergenic 30.0%
TGCATTGAAAAAAAGAGAGT+GGG - chr3_4:56710614-56710633 None:intergenic 30.0%
TTGCATTGAAAAAAAGAGAG+TGG - chr3_4:56710615-56710634 None:intergenic 30.0%
! ACACAATGTGTTAACTCTTT+TGG + chr3_4:56711352-56711371 Msa0508620:CDS 30.0%
! CACAATGTGTTAACTCTTTT+GGG + chr3_4:56711353-56711372 Msa0508620:CDS 30.0%
! ACAATGTGTTAACTCTTTTG+GGG + chr3_4:56711354-56711373 Msa0508620:CDS 30.0%
!! TTATGCACATAGATTAGTCT+TGG + chr3_4:56711468-56711487 Msa0508620:intron 30.0%
AAAGCCACATATTCATGTTA+TGG - chr3_4:56711515-56711534 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG + chr3_4:56711965-56711984 Msa0508620:intron 30.0%
AATTATGACATACCATCAAC+TGG - chr3_4:56712238-56712257 None:intergenic 30.0%
TCATAATATACGCATCTAAC+AGG + chr3_4:56712328-56712347 Msa0508620:intron 30.0%
GAATTTCTACTTCTTGATGA+AGG + chr3_4:56712550-56712569 Msa0508620:CDS 30.0%
AAATACACATTGAGATACAC+CGG + chr3_4:56712951-56712970 Msa0508620:CDS 30.0%
! TTTTCAATCAAGAGTCCTAA+TGG - chr3_4:56713242-56713261 None:intergenic 30.0%
AGGTTTGAAGAAACATTGTA+TGG + chr3_4:56713368-56713387 Msa0508620:CDS 30.0%
AAACATTGTATGGTTCATCA+AGG + chr3_4:56713378-56713397 Msa0508620:CDS 30.0%
ATCTAAGCATCTAGACATTA+AGG + chr3_4:56713582-56713601 Msa0508620:three_prime_UTR 30.0%
GTAAATTCCGAATTGCTTAA+TGG - chr3_4:56713615-56713634 None:intergenic 30.0%
TGTATAGGAAGAGATATGGT+GGG - chr3_4:56710448-56710467 None:intergenic 35.0%
TTGTATAGGAAGAGATATGG+TGG - chr3_4:56710449-56710468 None:intergenic 35.0%
GTCTTGTATAGGAAGAGATA+TGG - chr3_4:56710452-56710471 None:intergenic 35.0%
GAAAAAAAGAGAGTGGGAAT+GGG - chr3_4:56710608-56710627 None:intergenic 35.0%
TGAAAAAAAGAGAGTGGGAA+TGG - chr3_4:56710609-56710628 None:intergenic 35.0%
! ACATGCTATACTAGTTTCCA+TGG - chr3_4:56710689-56710708 None:intergenic 35.0%
TATTATTGTGCATACCCTGA+AGG - chr3_4:56710782-56710801 None:intergenic 35.0%
GTCATAACCAAATGCGAAAT+TGG + chr3_4:56711043-56711062 Msa0508620:CDS 35.0%
GTAGGAAGAATTCTTGTCAA+AGG + chr3_4:56711234-56711253 Msa0508620:intron 35.0%
! GGCTAACAATCTTCTTTTTG+AGG + chr3_4:56711402-56711421 Msa0508620:CDS 35.0%
ATGTTATGGATCCAATGTCT+AGG - chr3_4:56711501-56711520 None:intergenic 35.0%
GGATCCATAACATGAATATG+TGG + chr3_4:56711508-56711527 Msa0508620:intron 35.0%
! TGAATATGTGGCTTTTATGC+AGG + chr3_4:56711520-56711539 Msa0508620:intron 35.0%
AGTTCTTGTAGGAATCTCAT+TGG - chr3_4:56711590-56711609 None:intergenic 35.0%
AGCTCATGGAGATAATAAGA+TGG - chr3_4:56711930-56711949 None:intergenic 35.0%
TAATATACGCATCTAACAGG+AGG + chr3_4:56712331-56712350 Msa0508620:intron 35.0%
GTAGACACAAATTTCACAGT+AGG + chr3_4:56712394-56712413 Msa0508620:CDS 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG + chr3_4:56712442-56712461 Msa0508620:CDS 35.0%
CTTAAGTGCAAGTACATAAG+TGG - chr3_4:56712512-56712531 None:intergenic 35.0%
CACTTATGTACTTGCACTTA+AGG + chr3_4:56712510-56712529 Msa0508620:CDS 35.0%
AAGTAGAAATTCATGAGTGC+CGG - chr3_4:56712542-56712561 None:intergenic 35.0%
GTCAAAGAGACTCATGAAAT+TGG + chr3_4:56712750-56712769 Msa0508620:CDS 35.0%
ATAATCTGCATTGTCAAACG+TGG - chr3_4:56712811-56712830 None:intergenic 35.0%
TGACAATGCAGATTATGCTA+AGG + chr3_4:56712815-56712834 Msa0508620:CDS 35.0%
!! TTCGTTTTTCATCCCTTAGT+TGG + chr3_4:56712908-56712927 Msa0508620:intron 35.0%
CATAGTAATCGACCAACTAA+GGG - chr3_4:56712923-56712942 None:intergenic 35.0%
ACATAGTAATCGACCAACTA+AGG - chr3_4:56712924-56712943 None:intergenic 35.0%
AAAAGAACCTGGTTAACATC+CGG - chr3_4:56712987-56713006 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG - chr3_4:56712998-56713017 None:intergenic 35.0%
! GATAGAACTCAAGTTGCTTA+TGG + chr3_4:56713326-56713345 Msa0508620:CDS 35.0%
TGCTTATGGATCAAAGAATG+AGG + chr3_4:56713340-56713359 Msa0508620:CDS 35.0%
GATCAAAGAATGAGGTCATT+AGG + chr3_4:56713348-56713367 Msa0508620:CDS 35.0%
ATGTCTAGATGCTTAGATGT+TGG - chr3_4:56713580-56713599 None:intergenic 35.0%
CTTCCTTCCATTAAGCAATT+CGG + chr3_4:56713605-56713624 Msa0508620:three_prime_UTR 35.0%
ATTCCGAATTGCTTAATGGA+AGG - chr3_4:56713611-56713630 None:intergenic 35.0%
AAGCAATTCGGAATTTACAC+AGG + chr3_4:56713617-56713636 Msa0508620:three_prime_UTR 35.0%
! GAATTTACACAGGTTGAGTT+TGG + chr3_4:56713627-56713646 Msa0508620:three_prime_UTR 35.0%
GTATGTATTTGGACTACACA+TGG - chr3_4:56713653-56713672 None:intergenic 35.0%
TATAGGAAGAGATATGGTGG+GGG - chr3_4:56710446-56710465 None:intergenic 40.0%
GTATAGGAAGAGATATGGTG+GGG - chr3_4:56710447-56710466 None:intergenic 40.0%
!! GTTGTGCTATGGTCTTGTAT+AGG - chr3_4:56710463-56710482 None:intergenic 40.0%
GTGGCATGTGATGAATAGAT+AGG - chr3_4:56710540-56710559 None:intergenic 40.0%
TCTATTCATCACATGCCACA+TGG + chr3_4:56710541-56710560 Msa0508620:five_prime_UTR 40.0%
ATTATGCATGTAGTGCCATG+TGG - chr3_4:56710559-56710578 None:intergenic 40.0%
AGTATAGCATGTTACTCCAG+TGG + chr3_4:56710697-56710716 Msa0508620:CDS 40.0%
TGGTGAGTTACTTACATGTG+TGG + chr3_4:56711074-56711093 Msa0508620:intron 40.0%
AACCTAATCAGTCCCTTATC+CGG - chr3_4:56711265-56711284 None:intergenic 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG + chr3_4:56711267-56711286 Msa0508620:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG + chr3_4:56711277-56711296 Msa0508620:CDS 40.0%
AAAGTGAAGACAGCTTCTTG+TGG + chr3_4:56711325-56711344 Msa0508620:CDS 40.0%
TTGGTCCAATTCCTAGACAT+TGG + chr3_4:56711487-56711506 Msa0508620:intron 40.0%
TGGATCCAATGTCTAGGAAT+TGG - chr3_4:56711495-56711514 None:intergenic 40.0%
AGGTGTGGAAAAGTTCTTGT+AGG - chr3_4:56711601-56711620 None:intergenic 40.0%
CTTCGGGATAACACACTTAA+AGG + chr3_4:56711629-56711648 Msa0508620:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr3_4:56712076-56712095 None:intergenic 40.0%
GTCACCAAATTTCTATGCAC+AGG + chr3_4:56712141-56712160 Msa0508620:intron 40.0%
AAGGCCTGTGCATAGAAATT+TGG - chr3_4:56712148-56712167 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG - chr3_4:56712375-56712394 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG - chr3_4:56712376-56712395 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG - chr3_4:56712439-56712458 None:intergenic 40.0%
GCAAGTACATAAGTGGTTCT+AGG - chr3_4:56712505-56712524 None:intergenic 40.0%
AGTAGAAATTCATGAGTGCC+GGG - chr3_4:56712541-56712560 None:intergenic 40.0%
GAGACTCATGAAATTGGTGA+AGG + chr3_4:56712756-56712775 Msa0508620:CDS 40.0%
CTCAAACAACAGTCTCAACT+TGG - chr3_4:56713213-56713232 None:intergenic 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG + chr3_4:56713211-56713230 Msa0508620:CDS 40.0%
! TTGTTTGAGGTAGCTCCATT+AGG + chr3_4:56713224-56713243 Msa0508620:CDS 40.0%
GGACTCTTGATTGAAAATGC+TGG + chr3_4:56713245-56713264 Msa0508620:CDS 40.0%
CTCTTGATTGAAAATGCTGG+AGG + chr3_4:56713248-56713267 Msa0508620:CDS 40.0%
CCTTGTCTAGCACAGATTTA+TGG - chr3_4:56713289-56713308 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG + chr3_4:56713286-56713305 Msa0508620:CDS 40.0%
TATGGTTCATCAAGGCTCAA+GGG + chr3_4:56713386-56713405 Msa0508620:CDS 40.0%
! ATAGGAAGAGATATGGTGGG+GGG - chr3_4:56710445-56710464 None:intergenic 45.0%
!! ACTACGAAGAAAAGCACCAC+TGG - chr3_4:56710716-56710735 None:intergenic 45.0%
ACTGTCGCCAATTTCGCATT+TGG - chr3_4:56711053-56711072 None:intergenic 45.0%
ATGCGAAATTGGCGACAGTT+TGG + chr3_4:56711054-56711073 Msa0508620:CDS 45.0%
ATTCTTGTCAAAGGCGACAC+CGG + chr3_4:56711243-56711262 Msa0508620:CDS 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG + chr3_4:56711276-56711295 Msa0508620:CDS 45.0%
GCAACTTGCAGTGGATATTC+TGG + chr3_4:56711381-56711400 Msa0508620:CDS 45.0%
! TCCACACCTAGAATCGACTT+CGG + chr3_4:56711612-56711631 Msa0508620:intron 45.0%
! GTTATCCCGAAGTCGATTCT+AGG - chr3_4:56711621-56711640 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+TGG - chr3_4:56711944-56711963 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr3_4:56711943-56711962 Msa0508620:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr3_4:56711944-56711963 Msa0508620:intron 45.0%
! TGCATTTTATATGCAGGGGC+CGG + chr3_4:56711971-56711990 Msa0508620:intron 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG - chr3_4:56712167-56712186 None:intergenic 45.0%
AATCCCTGAGCTTCAAGACA+TGG + chr3_4:56712207-56712226 Msa0508620:CDS 45.0%
ATCCCTGAGCTTCAAGACAT+GGG + chr3_4:56712208-56712227 Msa0508620:CDS 45.0%
GTTGCATTTGACCCTCTTGA+TGG + chr3_4:56712361-56712380 Msa0508620:CDS 45.0%
TTCACAGTAGGCACCATCTT+TGG + chr3_4:56712406-56712425 Msa0508620:CDS 45.0%
! TAGGCACCATCTTTGGTGTA+TGG + chr3_4:56712413-56712432 Msa0508620:CDS 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG + chr3_4:56712433-56712452 Msa0508620:CDS 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG + chr3_4:56712468-56712487 Msa0508620:CDS 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG + chr3_4:56712469-56712488 Msa0508620:CDS 45.0%
! GTAGAAATTCATGAGTGCCG+GGG - chr3_4:56712540-56712559 None:intergenic 45.0%
GAAGGAAAACTATTCTCCCC+TGG + chr3_4:56712774-56712793 Msa0508620:CDS 45.0%
ACGTGGCTCTCAAATTTCCA+GGG - chr3_4:56712794-56712813 None:intergenic 45.0%
AACGTGGCTCTCAAATTTCC+AGG - chr3_4:56712795-56712814 None:intergenic 45.0%
TACACATTGAGATACACCGG+AGG + chr3_4:56712954-56712973 Msa0508620:CDS 45.0%
ATTGAGATACACCGGAGGAA+TGG + chr3_4:56712959-56712978 Msa0508620:CDS 45.0%
CAACAGTCTCAACTTGGCTT+TGG - chr3_4:56713207-56713226 None:intergenic 45.0%
GTATGGTTCATCAAGGCTCA+AGG + chr3_4:56713385-56713404 Msa0508620:CDS 45.0%
! TAGGAAGAGATATGGTGGGG+GGG - chr3_4:56710444-56710463 None:intergenic 50.0%
CATACCCTGAAGGCAGAAGA+GGG - chr3_4:56710772-56710791 None:intergenic 50.0%
TCAAAGGCGACACCGGATAA+GGG + chr3_4:56711250-56711269 Msa0508620:CDS 50.0%
CACCGGATAAGGGACTGATT+AGG + chr3_4:56711260-56711279 Msa0508620:CDS 50.0%
GTGAAGACAGCTTCTTGTGG+TGG + chr3_4:56711328-56711347 Msa0508620:CDS 50.0%
! CCACACCTAGAATCGACTTC+GGG + chr3_4:56711613-56711632 Msa0508620:intron 50.0%
CTCCATGAGCTTAGCTCAGT+TGG + chr3_4:56711939-56711958 Msa0508620:intron 50.0%
! GCATTTTATATGCAGGGGCC+GGG + chr3_4:56711972-56711991 Msa0508620:intron 50.0%
! CATTTTATATGCAGGGGCCG+GGG + chr3_4:56711973-56711992 Msa0508620:intron 50.0%
TGTGGAGAAGTGGAGAGAAG+TGG - chr3_4:56712015-56712034 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3_4:56712047-56712066 Msa0508620:intron 50.0%
CTCCCATGTCTTGAAGCTCA+GGG - chr3_4:56712213-56712232 None:intergenic 50.0%
! ACCATCTTTGGTGTATGGCC+TGG + chr3_4:56712418-56712437 Msa0508620:CDS 50.0%
ACCAGGCCATACACCAAAGA+TGG - chr3_4:56712422-56712441 None:intergenic 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG + chr3_4:56712478-56712497 Msa0508620:CDS 50.0%
CTTGCACTTAAGGACTTCCC+CGG + chr3_4:56712520-56712539 Msa0508620:CDS 50.0%
CGTGGCTCTCAAATTTCCAG+GGG - chr3_4:56712793-56712812 None:intergenic 50.0%
! AATGGTGCCGGATGTTAACC+AGG + chr3_4:56712977-56712996 Msa0508620:CDS 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG - chr3_4:56713200-56713219 None:intergenic 50.0%
GCTTAAGCACTTGCTCCAAC+AGG - chr3_4:56713419-56713438 None:intergenic 50.0%
!! GATGGAGGGTAGGGAGTGTT+TGG - chr3_4:56710746-56710765 None:intergenic 55.0%
! AGAGGGAGTGATGGAGGGTA+GGG - chr3_4:56710755-56710774 None:intergenic 55.0%
! AAGAGGGAGTGATGGAGGGT+AGG - chr3_4:56710756-56710775 None:intergenic 55.0%
! GCAGAAGAGGGAGTGATGGA+GGG - chr3_4:56710760-56710779 None:intergenic 55.0%
GAAGGCAGAAGAGGGAGTGA+TGG - chr3_4:56710764-56710783 None:intergenic 55.0%
TCACTCCCTCTTCTGCCTTC+AGG + chr3_4:56710764-56710783 Msa0508620:CDS 55.0%
CACTCCCTCTTCTGCCTTCA+GGG + chr3_4:56710765-56710784 Msa0508620:CDS 55.0%
GCATACCCTGAAGGCAGAAG+AGG - chr3_4:56710773-56710792 None:intergenic 55.0%
GTCAAAGGCGACACCGGATA+AGG + chr3_4:56711249-56711268 Msa0508620:CDS 55.0%
TGGGGATGAGCAACTTGCAG+TGG + chr3_4:56711372-56711391 Msa0508620:CDS 55.0%
! CCCGAAGTCGATTCTAGGTG+TGG - chr3_4:56711616-56711635 None:intergenic 55.0%
! TGGAGAGAAGTGGAGTGTCC+GGG - chr3_4:56712005-56712024 None:intergenic 55.0%
! GTGGAGAGAAGTGGAGTGTC+CGG - chr3_4:56712006-56712025 None:intergenic 55.0%
CTAGCCACTAGGCTACCACT+AGG + chr3_4:56712058-56712077 Msa0508620:intron 55.0%
GTAGCCTAGTGGTAGCCTAG+TGG - chr3_4:56712065-56712084 None:intergenic 55.0%
CCTCCCATGTCTTGAAGCTC+AGG - chr3_4:56712214-56712233 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG + chr3_4:56712211-56712230 Msa0508620:CDS 55.0%
GACATGGGAGGTCCAGTTGA+TGG + chr3_4:56712223-56712242 Msa0508620:CDS 55.0%
ATACACCGGAGGAATGGTGC+CGG + chr3_4:56712965-56712984 Msa0508620:CDS 55.0%
AACATCCGGCACCATTCCTC+CGG - chr3_4:56712973-56712992 None:intergenic 55.0%
GCTGGAGGTTACAGCAGTGA+TGG + chr3_4:56713263-56713282 Msa0508620:CDS 55.0%
GGTTCATCAAGGCTCAAGGG+TGG + chr3_4:56713389-56713408 Msa0508620:CDS 55.0%
CTCAAGGGTGGTGTACCTGT+TGG + chr3_4:56713401-56713420 Msa0508620:CDS 55.0%
GGCAGAAGAGGGAGTGATGG+AGG - chr3_4:56710761-56710780 None:intergenic 60.0%
GAGTGTCCGGGTTCGAACCC+CGG - chr3_4:56711993-56712012 None:intergenic 65.0%
CAGGGGCCGGGGTTCGAACC+CGG + chr3_4:56711984-56712003 Msa0508620:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 56710392 56713698 56710392 ID=Msa0508620;Name=Msa0508620
chr3_4 mRNA 56710392 56713698 56710392 ID=Msa0508620-mRNA-1;Parent=Msa0508620;Name=Msa0508620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=296|1|1|1|1|1|8|262|387
chr3_4 exon 56710392 56710786 56710392 ID=Msa0508620-mRNA-1:exon:12832;Parent=Msa0508620-mRNA-1
chr3_4 exon 56710956 56711075 56710956 ID=Msa0508620-mRNA-1:exon:12833;Parent=Msa0508620-mRNA-1
chr3_4 exon 56711238 56711423 56711238 ID=Msa0508620-mRNA-1:exon:12834;Parent=Msa0508620-mRNA-1
chr3_4 exon 56712163 56712244 56712163 ID=Msa0508620-mRNA-1:exon:12835;Parent=Msa0508620-mRNA-1
chr3_4 exon 56712350 56712571 56712350 ID=Msa0508620-mRNA-1:exon:12836;Parent=Msa0508620-mRNA-1
chr3_4 exon 56712736 56712836 56712736 ID=Msa0508620-mRNA-1:exon:12837;Parent=Msa0508620-mRNA-1
chr3_4 exon 56712927 56712998 56712927 ID=Msa0508620-mRNA-1:exon:12838;Parent=Msa0508620-mRNA-1
chr3_4 exon 56713155 56713698 56713155 ID=Msa0508620-mRNA-1:exon:12839;Parent=Msa0508620-mRNA-1
chr3_4 five_prime_UTR 56710392 56710687 56710392 ID=Msa0508620-mRNA-1:five_prime_utr;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56710688 56710786 56710688 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56710956 56711075 56710956 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56711238 56711423 56711238 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56712163 56712244 56712163 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56712350 56712571 56712350 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56712736 56712836 56712736 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56712927 56712998 56712927 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 CDS 56713155 56713436 56713155 ID=Msa0508620-mRNA-1:cds;Parent=Msa0508620-mRNA-1
chr3_4 three_prime_UTR 56713437 56713698 56713437 ID=Msa0508620-mRNA-1:three_prime_utr;Parent=Msa0508620-mRNA-1
Gene Sequence

>Msa0508620

ATGGAAACTAGTATAGCATGTTACTCCAGTGGTGCTTTTCTTCGTAGTGTTTCTGCCAAACACTCCCTACCCTCCATCACTCCCTCTTCTGCCTTCAGGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGCAAAGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATTCTGGCTAACAATCTTCTTTTTGAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGTCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTCTACTTCTTGATGAAGGAAAATGGCAGCATGTCAAAGAGACTCATGAAATTGGTGAAGGAAAACTATTCTCCCCTGGAAATTTGAGAGCCACGTTTGACAATGCAGATTATGCTAAGTTGGTCGATTACTATGTTAGAGAAAAATACACATTGAGATACACCGGAGGAATGGTGCCGGATGTTAACCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCATTAGGACTCTTGATTGAAAATGCTGGAGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGGTTTGAAGAAACATTGTATGGTTCATCAAGGCTCAAGGGTGGTGTACCTGTTGGAGCAAGTGCTTAA

Protein sequence

>Msa0508620

METSIACYSSGAFLRSVSAKHSLPSITPSSAFRSLKSSSLFGESLRVSSKSTLKFSRAKSTSVITKCEIGDSLEEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDILANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVIRFEETLYGSSRLKGGVPVGASA*