AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028940 MtrunA17_Chr1g0185571 97.257 401 11 0 1 401 1 401 0.0 801
Msa0028940 MtrunA17_Chr7g0271591 35.733 375 209 10 42 392 5 371 7.10e-61 201
Msa0028940 MtrunA17_Chr1g0211441 66.154 65 5 1 277 341 1 48 2.26e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028940 AT3G63140.1 81.977 344 62 0 56 399 61 404 0.0 594
Msa0028940 AT1G09340.1 35.244 349 212 6 51 392 30 371 1.79e-59 198
Msa0028940 AT1G09340.2 35.530 349 210 7 52 392 31 372 1.33e-58 196

Find 105 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1_1:+54064435 None:intergenic
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1_1:-54064038 Msa0028940:CDS
AGCCTTTCCTTTCCGTAATA+TGG 0.258949 1_1:-54064406 Msa0028940:intron
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1_1:-54065471 Msa0028940:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1_1:-54064871 Msa0028940:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1_1:-54064516 Msa0028940:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1_1:+54065711 None:intergenic
ACTCCATCCCAATTTACTTT+TGG 0.315805 1_1:+54064030 None:intergenic
TCATAATGCACAATGTTAAC+AGG 0.325320 1_1:+54064459 None:intergenic
CATTATGATCCAAAAGCTAT+TGG 0.327599 1_1:-54064444 Msa0028940:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1_1:-54065126 Msa0028940:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1_1:-54065529 Msa0028940:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1_1:+54063935 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.381004 1_1:-54064651 Msa0028940:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1_1:-54063971 Msa0028940:CDS
GCTAGATGATAAGATATTAG+AGG 0.403011 1_1:-54063921 Msa0028940:CDS
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1_1:-54064645 Msa0028940:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1_1:-54064854 Msa0028940:CDS
ATGCTATGATTTGCAGCATC+CGG 0.409637 1_1:+54064555 None:intergenic
AGATTGATAGAGAGGAGGAT+TGG 0.413296 1_1:+54065964 None:intergenic
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1_1:+54065935 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1_1:+54065956 None:intergenic
AAGCATGGCCATTGTTGCTT+AGG 0.431107 1_1:+54066085 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1_1:+54065102 None:intergenic
TACTTTGCAAAAGAGCTACT+TGG 0.437164 1_1:-54065798 Msa0028940:CDS
TTCTTGTTCATCAGTAGTGC+TGG 0.442792 1_1:-54065079 Msa0028940:CDS
CCACAGTATATGATAGGGTC+TGG 0.453744 1_1:-54064848 Msa0028940:CDS
ATGTGAAAGTGGGAGAAGAT+TGG 0.454331 1_1:+54066022 None:intergenic
AGCGGTGGACATGCCGTGAT+TGG 0.454893 1_1:-54065825 Msa0028940:CDS
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1_1:-54065125 Msa0028940:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1_1:-54065528 Msa0028940:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1_1:+54063898 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1_1:-54064037 Msa0028940:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1_1:-54065497 Msa0028940:CDS
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1_1:+54065941 None:intergenic
TATCTGTAACTACCATATTA+CGG 0.470842 1_1:+54064394 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1_1:-54063970 Msa0028940:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1_1:+54065758 None:intergenic
TTAGCTTTATCTGCAACTGC+TGG 0.480698 1_1:-54066118 Msa0028940:five_prime_UTR
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1_1:-54065545 Msa0028940:intron
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1_1:-54065492 Msa0028940:CDS
TGGATATGAATGGATTAGAC+AGG 0.488013 1_1:+54063881 None:intergenic
CTTGTTACATGATTTAAATG+AGG 0.488668 1_1:-54063824 Msa0028940:three_prime_UTR
TGCTATGATTTGCAGCATCC+GGG 0.492238 1_1:+54064556 None:intergenic
TTTACATACCCCTTCAACAT+GGG 0.493986 1_1:+54065030 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1_1:+54064003 None:intergenic
AAACGTTTAGAAGCTAAAGA+AGG 0.497940 1_1:+54065921 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1_1:-54065040 Msa0028940:CDS
GCAAAAGAGCTACTTGGTGC+TGG 0.499775 1_1:-54065792 Msa0028940:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1_1:-54065112 Msa0028940:CDS
AAACTATGTGCTCAAGCTGC+AGG 0.509740 1_1:-54064486 Msa0028940:CDS
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1_1:-54065509 Msa0028940:CDS
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1_1:-54065493 Msa0028940:CDS
AAGTGGGAGAAGATTGGAAG+AGG 0.519156 1_1:+54066028 None:intergenic
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1_1:-54064574 Msa0028940:CDS
TGAATGGATTAGACAGGCAC+TGG 0.522079 1_1:+54063887 None:intergenic
ACATCTGTTGGAAATGAGAA+AGG 0.529844 1_1:-54066155 None:intergenic
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1_1:-54065494 Msa0028940:CDS
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1_1:+54065959 None:intergenic
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1_1:-54063987 Msa0028940:CDS
AAAGTAGAAGAATGTGAAAG+TGG 0.543210 1_1:+54066011 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.543714 1_1:+54066058 None:intergenic
CACGGCATGTCCACCGCTGT+TGG 0.546475 1_1:+54065830 None:intergenic
ACAACACTCCCTACATCTGC+AGG 0.549124 1_1:+54065500 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1_1:-54065039 Msa0028940:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1_1:-54064929 Msa0028940:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1_1:+54066070 None:intergenic
GGAATGAAGAAGAGAAAGAA+AGG 0.551829 1_1:+54065985 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1_1:-54065508 Msa0028940:CDS
GTTGCAGAGAAGAGCAAGGT+AGG 0.560127 1_1:+54066050 None:intergenic
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1_1:-54065542 Msa0028940:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1_1:-54065447 Msa0028940:CDS
CTCATACTCCTAAGCAACAA+TGG 0.573968 1_1:-54066093 Msa0028940:exon
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1_1:-54064920 Msa0028940:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1_1:-54065868 Msa0028940:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1_1:+54064633 None:intergenic
TCAGTCACCATTCTCACTGT+TGG 0.586480 1_1:-54065765 Msa0028940:CDS
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1_1:+54065714 None:intergenic
TGAGAAAGGAAGGAAATAAG+TGG 0.589653 1_1:-54066141 Msa0028940:five_prime_UTR
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1_1:-54064033 Msa0028940:CDS
CTGTTGGAAATGAGAAAGGA+AGG 0.593222 1_1:-54066151 None:intergenic
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1_1:-54065477 Msa0028940:CDS
AACGTTTAGAAGCTAAAGAA+GGG 0.594765 1_1:+54065922 None:intergenic
TTACATACCCCTTCAACATG+GGG 0.600415 1_1:+54065031 None:intergenic
TGCAAAGTAGAAGCCAATCA+CGG 0.603066 1_1:+54065812 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1_1:+54065118 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1_1:-54064853 Msa0028940:CDS
TACCATATTACGGAAAGGAA+AGG 0.618636 1_1:+54064404 None:intergenic
GTAACTACCATATTACGGAA+AGG 0.619320 1_1:+54064399 None:intergenic
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1_1:+54064645 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1_1:+54065034 None:intergenic
ATAATAAATACCAACAGCGG+TGG 0.623645 1_1:-54065840 Msa0028940:CDS
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1_1:-54065038 Msa0028940:intron
TGGAAACAACAAAGATTGTG+AGG 0.640779 1_1:-54064828 Msa0028940:CDS
CATAATGCACAATGTTAACA+GGG 0.646540 1_1:+54064460 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1_1:+54064514 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1_1:-54063994 Msa0028940:CDS
AGAGGTTGCAGAGAAGAGCA+AGG 0.651792 1_1:+54066046 None:intergenic
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1_1:-54065439 Msa0028940:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1_1:-54065527 Msa0028940:CDS
AAGTAGAAGAATGTGAAAGT+GGG 0.654024 1_1:+54066012 None:intergenic
ACAACAAAGATTGTGAGGAG+TGG 0.655123 1_1:-54064823 Msa0028940:CDS
CTAATAATAAATACCAACAG+CGG 0.689956 1_1:-54065843 Msa0028940:CDS
CCAGACCCTATCATATACTG+TGG 0.716866 1_1:+54064848 None:intergenic
CAGTGAGAATGGTGACTGAG+TGG 0.736853 1_1:+54065769 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAATTTGAAAAATATTC+AGG - chr1_1:54064341-54064360 Msa0028940:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_1:54064937-54064956 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_1:54065160-54065179 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_1:54066034-54066053 None:intergenic 20.0%
!! GTTGAATTTGAAAAATATTC+AGG - chr1_1:54064341-54064360 Msa0028940:intron 20.0%
!! CATCTTTAGATTACAATAAT+TGG + chr1_1:54064937-54064956 None:intergenic 20.0%
!! GTAAAAAAAAAAGCTTCATA+TGG + chr1_1:54065160-54065179 None:intergenic 20.0%
!!! TTTTACATTTTGGATATGAA+TGG + chr1_1:54066034-54066053 None:intergenic 20.0%
! CTAATAATAAATACCAACAG+CGG - chr1_1:54064059-54064078 Msa0028940:intron 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_1:54064194-54064213 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_1:54064245-54064264 None:intergenic 25.0%
! ATGAAACCTTGATGTAATAA+TGG + chr1_1:54064316-54064335 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_1:54064762-54064781 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_1:54064761-54064780 Msa0028940:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_1:54064923-54064942 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_1:54064945-54064964 Msa0028940:intron 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_1:54065152-54065171 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_1:54065218-54065237 Msa0028940:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_1:54065219-54065238 Msa0028940:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_1:54065511-54065530 None:intergenic 25.0%
!! TCTGTGATCATTTTACATTT+TGG + chr1_1:54066044-54066063 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_1:54066078-54066097 Msa0028940:exon 25.0%
! CTAATAATAAATACCAACAG+CGG - chr1_1:54064059-54064078 Msa0028940:intron 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_1:54064194-54064213 None:intergenic 25.0%
!! AGTGAAAAGAACAATTCTTT+TGG + chr1_1:54064245-54064264 None:intergenic 25.0%
! ATGAAACCTTGATGTAATAA+TGG + chr1_1:54064316-54064335 None:intergenic 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_1:54064762-54064781 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_1:54064761-54064780 Msa0028940:intron 25.0%
! AATAATTGGTATCAGCAAAA+TGG + chr1_1:54064923-54064942 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_1:54064945-54064964 Msa0028940:intron 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_1:54065152-54065171 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_1:54065218-54065237 Msa0028940:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_1:54065219-54065238 Msa0028940:intron 25.0%
! TATCTGTAACTACCATATTA+CGG + chr1_1:54065511-54065530 None:intergenic 25.0%
!! TCTGTGATCATTTTACATTT+TGG + chr1_1:54066044-54066063 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_1:54066078-54066097 Msa0028940:exon 25.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_1:54063893-54063912 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_1:54063894-54063913 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_1:54063983-54064002 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_1:54063984-54064003 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_1:54064307-54064326 Msa0028940:intron 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_1:54065019-54065038 Msa0028940:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_1:54065020-54065039 Msa0028940:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_1:54065445-54065464 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_1:54065446-54065465 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_1:54065458-54065477 Msa0028940:CDS 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_1:54065535-54065554 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_1:54065600-54065619 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_1:54065931-54065950 Msa0028940:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_1:54065932-54065951 Msa0028940:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_1:54065970-54065989 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_1:54065981-54066000 Msa0028940:CDS 30.0%
AAGTAGAAGAATGTGAAAGT+GGG + chr1_1:54063893-54063912 None:intergenic 30.0%
AAAGTAGAAGAATGTGAAAG+TGG + chr1_1:54063894-54063913 None:intergenic 30.0%
AACGTTTAGAAGCTAAAGAA+GGG + chr1_1:54063983-54064002 None:intergenic 30.0%
AAACGTTTAGAAGCTAAAGA+AGG + chr1_1:54063984-54064003 None:intergenic 30.0%
CAATCACCATTATTACATCA+AGG - chr1_1:54064307-54064326 Msa0028940:intron 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_1:54065019-54065038 Msa0028940:intron 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_1:54065020-54065039 Msa0028940:intron 30.0%
CATAATGCACAATGTTAACA+GGG + chr1_1:54065445-54065464 None:intergenic 30.0%
TCATAATGCACAATGTTAAC+AGG + chr1_1:54065446-54065465 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_1:54065458-54065477 Msa0028940:CDS 30.0%
TGTAATGCAGACTAGAATAT+AGG + chr1_1:54065535-54065554 None:intergenic 30.0%
! GTTTACAGGTTCAATACTTT+TGG + chr1_1:54065600-54065619 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_1:54065931-54065950 Msa0028940:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_1:54065932-54065951 Msa0028940:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_1:54065970-54065989 None:intergenic 30.0%
GCTAGATGATAAGATATTAG+AGG - chr1_1:54065981-54066000 Msa0028940:CDS 30.0%
TGAGAAAGGAAGGAAATAAG+TGG - chr1_1:54063761-54063780 Msa0028940:three_prime_UTR 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_1:54063920-54063939 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_1:54063970-54063989 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_1:54064062-54064081 Msa0028940:intron 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_1:54064104-54064123 Msa0028940:intron 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_1:54064191-54064210 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_1:54064543-54064562 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_1:54064621-54064640 Msa0028940:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_1:54064736-54064755 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_1:54064875-54064894 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_1:54064876-54064895 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_1:54064902-54064921 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_1:54065074-54065093 Msa0028940:CDS 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_1:54065470-54065489 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_1:54065501-54065520 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_1:54065506-54065525 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_1:54065605-54065624 Msa0028940:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_1:54065614-54065633 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_1:54065733-54065752 Msa0028940:CDS 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_1:54065734-54065753 Msa0028940:CDS 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_1:54065865-54065884 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_1:54065864-54065883 Msa0028940:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_1:54065865-54065884 Msa0028940:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_1:54065875-54065894 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_1:54065908-54065927 Msa0028940:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_1:54066024-54066043 None:intergenic 35.0%
TGAGAAAGGAAGGAAATAAG+TGG - chr1_1:54063761-54063780 Msa0028940:three_prime_UTR 35.0%
GGAATGAAGAAGAGAAAGAA+AGG + chr1_1:54063920-54063939 None:intergenic 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_1:54063970-54063989 None:intergenic 35.0%
ATAATAAATACCAACAGCGG+TGG - chr1_1:54064062-54064081 Msa0028940:intron 35.0%
TACTTTGCAAAAGAGCTACT+TGG - chr1_1:54064104-54064123 Msa0028940:intron 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_1:54064191-54064210 None:intergenic 35.0%
AACCTGTTGAGTTAACATGA+AGG + chr1_1:54064543-54064562 None:intergenic 35.0%
GTTAGTTGTCTGATATGTGT+CGG - chr1_1:54064621-54064640 Msa0028940:CDS 35.0%
!! TCTTTCTTTAAGACTGTACC+TGG + chr1_1:54064736-54064755 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_1:54064875-54064894 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_1:54064876-54064895 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_1:54064902-54064921 None:intergenic 35.0%
TGGAAACAACAAAGATTGTG+AGG - chr1_1:54065074-54065093 Msa0028940:CDS 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_1:54065470-54065489 None:intergenic 35.0%
TACCATATTACGGAAAGGAA+AGG + chr1_1:54065501-54065520 None:intergenic 35.0%
GTAACTACCATATTACGGAA+AGG + chr1_1:54065506-54065525 None:intergenic 35.0%
ATTGAACCTGTAAACAGAAC+AGG - chr1_1:54065605-54065624 Msa0028940:intron 35.0%
TACTATCCTGTTCTGTTTAC+AGG + chr1_1:54065614-54065633 None:intergenic 35.0%
AAACTCATCATGTCTCAACA+AGG - chr1_1:54065733-54065752 Msa0028940:CDS 35.0%
AACTCATCATGTCTCAACAA+GGG - chr1_1:54065734-54065753 Msa0028940:CDS 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_1:54065865-54065884 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_1:54065864-54065883 Msa0028940:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_1:54065865-54065884 Msa0028940:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_1:54065875-54065894 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_1:54065908-54065927 Msa0028940:CDS 35.0%
!! TGGATATGAATGGATTAGAC+AGG + chr1_1:54066024-54066043 None:intergenic 35.0%
!! TTAGCTTTATCTGCAACTGC+TGG - chr1_1:54063784-54063803 Msa0028940:three_prime_UTR 40.0%
CTCATACTCCTAAGCAACAA+TGG - chr1_1:54063809-54063828 Msa0028940:three_prime_UTR 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_1:54063883-54063902 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_1:54063941-54063960 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_1:54064093-54064112 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_1:54064147-54064166 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_1:54064357-54064376 Msa0028940:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_1:54064431-54064450 Msa0028940:CDS 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_1:54064441-54064460 Msa0028940:CDS 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_1:54064538-54064557 Msa0028940:CDS 40.0%
CTGTTCTAATATATGCAGCC+AGG - chr1_1:54064715-54064734 Msa0028940:intron 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_1:54064765-54064784 Msa0028940:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_1:54064823-54064842 Msa0028940:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_1:54064874-54064893 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_1:54064951-54064970 Msa0028940:intron 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_1:54065048-54065067 Msa0028940:CDS 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_1:54065049-54065068 Msa0028940:CDS 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_1:54065079-54065098 Msa0028940:CDS 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_1:54065097-54065116 Msa0028940:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_1:54065098-54065117 Msa0028940:CDS 40.0%
TCTCGAACAATCCCTACAAA+TGG + chr1_1:54065233-54065252 None:intergenic 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_1:54065350-54065369 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_1:54065391-54065410 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_1:54065496-54065515 Msa0028940:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_1:54065869-54065888 Msa0028940:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_1:54065909-54065928 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_1:54065913-54065932 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_1:54065915-54065934 Msa0028940:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_1:54065921-54065940 None:intergenic 40.0%
!! TTAGCTTTATCTGCAACTGC+TGG - chr1_1:54063784-54063803 Msa0028940:three_prime_UTR 40.0%
CTCATACTCCTAAGCAACAA+TGG - chr1_1:54063809-54063828 Msa0028940:three_prime_UTR 40.0%
ATGTGAAAGTGGGAGAAGAT+TGG + chr1_1:54063883-54063902 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_1:54063941-54063960 None:intergenic 40.0%
TGCAAAGTAGAAGCCAATCA+CGG + chr1_1:54064093-54064112 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_1:54064147-54064166 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_1:54064357-54064376 Msa0028940:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_1:54064431-54064450 Msa0028940:CDS 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_1:54064441-54064460 Msa0028940:CDS 40.0%
TGCCTTCATGTTAACTCAAC+AGG - chr1_1:54064538-54064557 Msa0028940:CDS 40.0%
CTGTTCTAATATATGCAGCC+AGG - chr1_1:54064715-54064734 Msa0028940:intron 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_1:54064765-54064784 Msa0028940:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_1:54064823-54064842 Msa0028940:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_1:54064874-54064893 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_1:54064951-54064970 Msa0028940:intron 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_1:54065048-54065067 Msa0028940:CDS 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_1:54065049-54065068 Msa0028940:CDS 40.0%
ACAACAAAGATTGTGAGGAG+TGG - chr1_1:54065079-54065098 Msa0028940:CDS 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_1:54065097-54065116 Msa0028940:CDS 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_1:54065098-54065117 Msa0028940:CDS 40.0%
TCTCGAACAATCCCTACAAA+TGG + chr1_1:54065233-54065252 None:intergenic 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_1:54065350-54065369 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_1:54065391-54065410 None:intergenic 40.0%
AGCCTTTCCTTTCCGTAATA+TGG - chr1_1:54065496-54065515 Msa0028940:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_1:54065869-54065888 Msa0028940:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_1:54065909-54065928 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_1:54065913-54065932 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_1:54065915-54065934 Msa0028940:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_1:54065921-54065940 None:intergenic 40.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_1:54063820-54063839 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_1:54063877-54063896 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_1:54063946-54063965 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_1:54063949-54063968 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_1:54063964-54063983 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_1:54064034-54064053 Msa0028940:CDS 45.0%
TCAGTCACCATTCTCACTGT+TGG - chr1_1:54064137-54064156 Msa0028940:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_1:54064409-54064428 Msa0028940:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_1:54064446-54064465 Msa0028940:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_1:54064455-54064474 Msa0028940:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_1:54064777-54064796 Msa0028940:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_1:54064863-54064882 Msa0028940:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_1:54064982-54065001 Msa0028940:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_1:54065031-54065050 Msa0028940:intron 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_1:54065057-54065076 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_1:54065054-54065073 Msa0028940:CDS 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_1:54065349-54065368 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_1:54065416-54065435 Msa0028940:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_1:54065648-54065667 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_1:54065749-54065768 Msa0028940:CDS 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_1:54065902-54065921 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_1:54066018-54066037 None:intergenic 45.0%
! AAGCATGGCCATTGTTGCTT+AGG + chr1_1:54063820-54063839 None:intergenic 45.0%
AAGTGGGAGAAGATTGGAAG+AGG + chr1_1:54063877-54063896 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_1:54063946-54063965 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_1:54063949-54063968 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_1:54063964-54063983 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_1:54064034-54064053 Msa0028940:CDS 45.0%
TCAGTCACCATTCTCACTGT+TGG - chr1_1:54064137-54064156 Msa0028940:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_1:54064409-54064428 Msa0028940:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_1:54064446-54064465 Msa0028940:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_1:54064455-54064474 Msa0028940:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_1:54064777-54064796 Msa0028940:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_1:54064863-54064882 Msa0028940:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_1:54064982-54065001 Msa0028940:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_1:54065031-54065050 Msa0028940:intron 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_1:54065057-54065076 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_1:54065054-54065073 Msa0028940:CDS 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_1:54065349-54065368 None:intergenic 45.0%
AAACTATGTGCTCAAGCTGC+AGG - chr1_1:54065416-54065435 Msa0028940:intron 45.0%
CACAAAGTCGTTCAGCAACA+TGG + chr1_1:54065648-54065667 None:intergenic 45.0%
AACAAGGGAACTCTGCATCA+TGG - chr1_1:54065749-54065768 Msa0028940:CDS 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_1:54065902-54065921 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_1:54066018-54066037 None:intergenic 45.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_1:54063835-54063854 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_1:54063847-54063866 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_1:54063855-54063874 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_1:54063859-54063878 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_1:54064110-54064129 Msa0028940:intron 50.0%
CAGTGAGAATGGTGACTGAG+TGG + chr1_1:54064136-54064155 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_1:54064360-54064379 Msa0028940:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_1:54064374-54064393 Msa0028940:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_1:54064393-54064412 Msa0028940:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_1:54064394-54064413 Msa0028940:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_1:54064405-54064424 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_1:54064405-54064424 Msa0028940:intron 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_1:54064408-54064427 Msa0028940:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_1:54064410-54064429 Msa0028940:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_1:54064425-54064444 Msa0028940:CDS 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_1:54064776-54064795 Msa0028940:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_1:54064787-54064806 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_1:54064790-54064809 Msa0028940:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_1:54064803-54064822 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_1:54064862-54064881 Msa0028940:CDS 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_1:54064864-54064883 Msa0028940:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_1:54064973-54064992 Msa0028940:intron 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_1:54065251-54065270 Msa0028940:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_1:54065260-54065279 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_1:54065257-54065276 Msa0028940:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_1:54065272-54065291 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_1:54065328-54065347 Msa0028940:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_1:54065386-54065405 Msa0028940:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_1:54066007-54066026 None:intergenic 50.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_1:54063835-54063854 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_1:54063847-54063866 None:intergenic 50.0%
GTTGCAGAGAAGAGCAAGGT+AGG + chr1_1:54063855-54063874 None:intergenic 50.0%
AGAGGTTGCAGAGAAGAGCA+AGG + chr1_1:54063859-54063878 None:intergenic 50.0%
!! GCAAAAGAGCTACTTGGTGC+TGG - chr1_1:54064110-54064129 Msa0028940:intron 50.0%
CAGTGAGAATGGTGACTGAG+TGG + chr1_1:54064136-54064155 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_1:54064360-54064379 Msa0028940:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_1:54064374-54064393 Msa0028940:intron 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_1:54064393-54064412 Msa0028940:intron 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_1:54064394-54064413 Msa0028940:intron 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_1:54064405-54064424 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_1:54064405-54064424 Msa0028940:intron 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_1:54064408-54064427 Msa0028940:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_1:54064410-54064429 Msa0028940:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_1:54064425-54064444 Msa0028940:CDS 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_1:54064776-54064795 Msa0028940:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_1:54064787-54064806 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_1:54064790-54064809 Msa0028940:intron 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_1:54064803-54064822 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_1:54064862-54064881 Msa0028940:CDS 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_1:54064864-54064883 Msa0028940:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_1:54064973-54064992 Msa0028940:intron 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_1:54065251-54065270 Msa0028940:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_1:54065260-54065279 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_1:54065257-54065276 Msa0028940:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_1:54065272-54065291 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_1:54065328-54065347 Msa0028940:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_1:54065386-54065405 Msa0028940:intron 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_1:54066007-54066026 None:intergenic 50.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_1:54064373-54064392 Msa0028940:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_1:54064375-54064394 Msa0028940:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_1:54064463-54064482 Msa0028940:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_1:54064871-54064890 None:intergenic 55.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_1:54064373-54064392 Msa0028940:intron 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_1:54064375-54064394 Msa0028940:intron 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_1:54064463-54064482 Msa0028940:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_1:54064871-54064890 None:intergenic 55.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_1:54064077-54064096 Msa0028940:intron 60.0%
AGCGGTGGACATGCCGTGAT+TGG - chr1_1:54064077-54064096 Msa0028940:intron 60.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_1:54064075-54064094 None:intergenic 65.0%
CACGGCATGTCCACCGCTGT+TGG + chr1_1:54064075-54064094 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54063761 54066163 54063761 ID=Msa0028940;Name=Msa0028940
chr1_1 mRNA 54063761 54066163 54063761 ID=Msa0028940-mRNA-1;Parent=Msa0028940;Name=Msa0028940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=67|1|1|1|1|1|6|134|401
chr1_1 exon 54063761 54064077 54063761 ID=Msa0028940-mRNA-1:exon:15962;Parent=Msa0028940-mRNA-1
chr1_1 exon 54064407 54064684 54064407 ID=Msa0028940-mRNA-1:exon:15961;Parent=Msa0028940-mRNA-1
chr1_1 exon 54064813 54064951 54064813 ID=Msa0028940-mRNA-1:exon:15960;Parent=Msa0028940-mRNA-1
chr1_1 exon 54065039 54065141 54065039 ID=Msa0028940-mRNA-1:exon:15959;Parent=Msa0028940-mRNA-1
chr1_1 exon 54065440 54065561 54065440 ID=Msa0028940-mRNA-1:exon:15958;Parent=Msa0028940-mRNA-1
chr1_1 exon 54065716 54066163 54065716 ID=Msa0028940-mRNA-1:exon:15957;Parent=Msa0028940-mRNA-1
chr1_1 five_prime_UTR 54066097 54066163 54066097 ID=Msa0028940-mRNA-1:five_prime_utr;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54065716 54066096 54065716 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54065440 54065561 54065440 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54065039 54065141 54065039 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54064813 54064951 54064813 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54064407 54064684 54064407 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 CDS 54063895 54064077 54063895 ID=Msa0028940-mRNA-1:cds;Parent=Msa0028940-mRNA-1
chr1_1 three_prime_UTR 54063761 54063894 54063761 ID=Msa0028940-mRNA-1:three_prime_utr;Parent=Msa0028940-mRNA-1
Gene Sequence

>Msa0028940

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCTCTGCAACCTCTTCCAATCTTCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCTTCATTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAGCTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATAATAAATACCAACAGCGGTGGACATGCCGTGATTGGCTTCTACTTTGCAAAAGAGCTACTTGGTGCTGGCCACTCAGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGTGAGGAGTGGTTCTTTGACAGGATTGTTCGAGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCTCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATTTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGTGCTCAAGCTGCAGGACGCCCTGTTAACATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTTCCTTTCCGTAATATGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>Msa0028940

MAMLASSSPTLLFSATSSNLLPLSHSSTLRLSFSSSFQSSSLSISSTFLSHPSLASKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*