AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508660 MtrunA17_Chr3g0113101 99.483 387 2 0 1 387 1 387 0.0 790
Msa0508660 MtrunA17_Chr2g0278581 31.429 280 171 9 116 379 67 341 2.03e-23 99.8
Msa0508660 MtrunA17_Chr7g0241071 28.720 289 171 9 115 371 125 410 2.11e-20 92.0
Msa0508660 MtrunA17_Chr6g0463901 28.253 269 165 8 116 364 67 327 8.84e-19 86.7
Msa0508660 MtrunA17_Chr4g0049821 27.113 284 166 14 120 378 124 391 5.60e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508660 AT3G55800.1 79.695 394 72 3 1 387 1 393 0.0 645
Msa0508660 AT1G43670.1 31.061 264 164 5 116 364 67 327 8.06e-23 98.6
Msa0508660 AT5G64380.1 26.101 318 182 14 86 368 90 389 5.86e-15 76.3

Find 127 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3_4:-56750992 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3_4:+56748664 Msa0508660:CDS
ATTTAGTTCTAGTCATAAAT+AGG 0.198228 3_4:-56751241 None:intergenic
ACACAATGTGTTAACTCTTT+TGG 0.201562 3_4:+56749057 Msa0508660:CDS
GTAAATTCCGAATTGCTTAA+TGG 0.211059 3_4:-56751318 None:intergenic
TCACTCCCTCTTCTGCCTTC+AGG 0.230507 3_4:+56748469 Msa0508660:CDS
CTTGTATTATGGTATGTATT+TGG 0.252537 3_4:-56751367 None:intergenic
GTCATAACCAAATGCGAAAT+TGG 0.262915 3_4:+56748748 Msa0508660:CDS
CAATTGATATTTCAGGAAAA+TGG 0.276601 3_4:+56750427 Msa0508660:intron
CACTTATGTACTTGCACTTA+AGG 0.290701 3_4:+56750216 Msa0508660:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3_4:+56751032 Msa0508660:CDS
GTCAAAGAGACTCATGAAAT+TGG 0.322823 3_4:+56750456 Msa0508660:CDS
CACTCCCTCTTCTGCCTTCA+GGG 0.336824 3_4:+56748470 Msa0508660:CDS
TTCACAGTAGGCACCATCTT+TGG 0.339734 3_4:+56750112 Msa0508660:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3_4:+56750067 Msa0508660:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3_4:+56751054 Msa0508660:CDS
AACGTGGCTCTCAAATTTCC+AGG 0.345781 3_4:-56750498 None:intergenic
ACTGTCGCCAATTTCGCATT+TGG 0.348976 3_4:-56748755 None:intergenic
ATCTAAGCATCTAGACATTA+AGG 0.350021 3_4:+56751288 Msa0508660:three_prime_UTR
TTGTTTGAGGTAGCTCCATT+AGG 0.352175 3_4:+56750930 Msa0508660:CDS
GAATTTACACAGGTTGAGTT+TGG 0.359303 3_4:+56751333 Msa0508660:three_prime_UTR
TTTAGTTCTAGTCATAAATA+GGG 0.364278 3_4:-56751240 None:intergenic
AGAGGGAGTGATGGAGGGTA+GGG 0.378558 3_4:-56748457 None:intergenic
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3_4:-56750903 None:intergenic
GCAACTTGCAGTGGATATTC+TGG 0.382217 3_4:+56749086 Msa0508660:CDS
AAGAGGGAGTGATGGAGGGT+AGG 0.386970 3_4:-56748458 None:intergenic
CTTCCTTCCATTAAGCAATT+CGG 0.389996 3_4:+56751311 Msa0508660:three_prime_UTR
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3_4:+56750858 Msa0508660:intron
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3_4:+56750857 Msa0508660:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3_4:-56749917 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3_4:+56750148 Msa0508660:CDS
GATGGAGGGTAGGGAGTGTT+TGG 0.409911 3_4:-56748448 None:intergenic
AGTTACAAACTAGCAAATAT+TGG 0.411486 3_4:+56748114 Msa0508660:five_prime_UTR
AAATATAATTTATGTTCAAA+TGG 0.412027 3_4:+56751260 Msa0508660:three_prime_UTR
GGCAGAAGAGGGAGTGATGG+AGG 0.413966 3_4:-56748463 None:intergenic
GCAAGTACATAAGTGGTTCT+AGG 0.415518 3_4:-56750208 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3_4:-56749941 None:intergenic
ATGCGAAATTGGCGACAGTT+TGG 0.435500 3_4:+56748759 Msa0508660:CDS
AAAATTTCAAAATGAAATGT+AGG 0.437363 3_4:-56751151 None:intergenic
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3_4:-56750910 None:intergenic
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3_4:+56748972 Msa0508660:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3_4:+56750174 Msa0508660:CDS
AGGTTTGAAGAAACATTGTA+TGG 0.459432 3_4:+56751074 Msa0508660:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3_4:+56748954 Msa0508660:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3_4:+56749929 Msa0508660:CDS
GTCTTGTATAGGAAGAGATA+TGG 0.469412 3_4:-56748154 None:intergenic
TCAAAGGCGACACCGGATAA+GGG 0.472586 3_4:+56748955 Msa0508660:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3_4:-56748967 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3_4:-56749870 None:intergenic
GAATTTCTACTTCTTGATGA+AGG 0.478553 3_4:+56750256 Msa0508660:CDS
GAAGGCAGAAGAGGGAGTGA+TGG 0.480102 3_4:-56748466 None:intergenic
TTGCATCACAAATATTTATG+TGG 0.480738 3_4:-56748187 None:intergenic
GCTTAAGCACTTGCTCCAAC+AGG 0.481475 3_4:-56751122 None:intergenic
GGACTCTTGATTGAAAATGC+TGG 0.481565 3_4:+56750951 Msa0508660:CDS
AGTAGAAATTCATGAGTGCC+GGG 0.495020 3_4:-56750244 None:intergenic
AAGTAGAAATTCATGAGTGC+CGG 0.495327 3_4:-56750245 None:intergenic
CTCAAACAACAGTCTCAACT+TGG 0.497480 3_4:-56750916 None:intergenic
AACATCCGGCACCATTCCTC+CGG 0.502390 3_4:-56750676 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3_4:+56750119 Msa0508660:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3_4:-56750215 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3_4:+56750175 Msa0508660:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3_4:+56750124 Msa0508660:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3_4:+56748965 Msa0508660:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3_4:+56750917 Msa0508660:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3_4:+56750139 Msa0508660:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3_4:-56750125 None:intergenic
GCAGAAGAGGGAGTGATGGA+GGG 0.545840 3_4:-56748462 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3_4:+56748939 Msa0508660:intron
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3_4:+56748981 Msa0508660:CDS
ATATTTATGTGGTTGTGCTA+TGG 0.554917 3_4:-56748176 None:intergenic
CTCAAGGGTGGTGTACCTGT+TGG 0.557393 3_4:+56751107 Msa0508660:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3_4:+56750226 Msa0508660:CDS
ATTCCGAATTGCTTAATGGA+AGG 0.558767 3_4:-56751314 None:intergenic
AAAAGAACCTGGTTAACATC+CGG 0.559892 3_4:-56750690 None:intergenic
GAAGGAAAACTATTCTCCCC+TGG 0.564395 3_4:+56750480 Msa0508660:CDS
AATGGTGCCGGATGTTAACC+AGG 0.565507 3_4:+56750683 Msa0508660:CDS
AAACATTGTATGGTTCATCA+AGG 0.565959 3_4:+56751084 Msa0508660:CDS
GTATGGTTCATCAAGGCTCA+AGG 0.566669 3_4:+56751091 Msa0508660:CDS
GTTGTGCTATGGTCTTGTAT+AGG 0.567533 3_4:-56748165 None:intergenic
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3_4:+56749913 Msa0508660:CDS
GCTGGAGGTTACAGCAGTGA+TGG 0.571612 3_4:+56750969 Msa0508660:CDS
ATTGAGATACACCGGAGGAA+TGG 0.572312 3_4:+56750665 Msa0508660:CDS
ATGTCTAGATGCTTAGATGT+TGG 0.572500 3_4:-56751283 None:intergenic
CCATAAATCTGTGCTAGACA+AGG 0.577457 3_4:+56750992 Msa0508660:CDS
TGACAATGCAGATTATGCTA+AGG 0.577947 3_4:+56750521 Msa0508660:CDS
ACATGCTATACTAGTTTCCA+TGG 0.581877 3_4:-56748391 None:intergenic
TATTATTGTGCATACCCTGA+AGG 0.582360 3_4:-56748484 None:intergenic
GTGGCATGTGATGAATAGAT+AGG 0.582573 3_4:-56748242 None:intergenic
TTGTATAGGAAGAGATATGG+TGG 0.585414 3_4:-56748151 None:intergenic
GTAGACACAAATTTCACAGT+AGG 0.585426 3_4:+56750100 Msa0508660:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3_4:+56749077 Msa0508660:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3_4:+56749914 Msa0508660:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3_4:+56748948 Msa0508660:CDS
ACTACGAAGAAAAGCACCAC+TGG 0.593568 3_4:-56748418 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3_4:-56749916 None:intergenic
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3_4:+56749033 Msa0508660:CDS
ATATAGCAATTATAGATATG+TGG 0.597775 3_4:-56748287 None:intergenic
CATACCCTGAAGGCAGAAGA+GGG 0.598076 3_4:-56748474 None:intergenic
GAGACTCATGAAATTGGTGA+AGG 0.599892 3_4:+56750462 Msa0508660:CDS
TGTATAGGAAGAGATATGGT+GGG 0.601117 3_4:-56748150 None:intergenic
TATGGTTCATCAAGGCTCAA+GGG 0.610673 3_4:+56751092 Msa0508660:CDS
CTCTTGATTGAAAATGCTGG+AGG 0.611258 3_4:+56750954 Msa0508660:CDS
ACGTGGCTCTCAAATTTCCA+GGG 0.611538 3_4:-56750497 None:intergenic
GCATACCCTGAAGGCAGAAG+AGG 0.613244 3_4:-56748475 None:intergenic
AAGCAATTCGGAATTTACAC+AGG 0.613950 3_4:+56751323 Msa0508660:three_prime_UTR
ATACACCGGAGGAATGGTGC+CGG 0.622946 3_4:+56750671 Msa0508660:CDS
TGCTTATGGATCAAAGAATG+AGG 0.624161 3_4:+56751046 Msa0508660:CDS
AAATACACATTGAGATACAC+CGG 0.625848 3_4:+56750657 Msa0508660:CDS
GTATAGGAAGAGATATGGTG+GGG 0.629809 3_4:-56748149 None:intergenic
ACTCCAATCAACTTATCACC+AGG 0.643314 3_4:-56750142 None:intergenic
AGTATAGCATGTTACTCCAG+TGG 0.647366 3_4:+56748402 Msa0508660:CDS
ACTATGCTTGAACCATCAAG+AGG 0.650576 3_4:-56750079 None:intergenic
TATAGGAAGAGATATGGTGG+GGG 0.657342 3_4:-56748148 None:intergenic
TCTATTCATCACATGCCACA+TGG 0.658867 3_4:+56748246 Msa0508660:five_prime_UTR
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3_4:+56748982 Msa0508660:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3_4:+56749030 Msa0508660:CDS
GTATGTATTTGGACTACACA+TGG 0.677028 3_4:-56751356 None:intergenic
ATAATCTGCATTGTCAAACG+TGG 0.681581 3_4:-56750514 None:intergenic
CTATGCTTGAACCATCAAGA+GGG 0.684004 3_4:-56750078 None:intergenic
GGTTCATCAAGGCTCAAGGG+TGG 0.686247 3_4:+56751095 Msa0508660:CDS
ATAGGAAGAGATATGGTGGG+GGG 0.687951 3_4:-56748147 None:intergenic
TAGGAAGAGATATGGTGGGG+GGG 0.691506 3_4:-56748146 None:intergenic
GTAGAAATTCATGAGTGCCG+GGG 0.695072 3_4:-56750243 None:intergenic
CGTGGCTCTCAAATTTCCAG+GGG 0.699176 3_4:-56750496 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3_4:+56749917 Msa0508660:CDS
TACACATTGAGATACACCGG+AGG 0.744654 3_4:+56750660 Msa0508660:CDS
ATTATGCATGTAGTGCCATG+TGG 0.745934 3_4:-56748261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATGATTAATTTAT+TGG + chr3_4:56748524-56748543 Msa0508660:intron 10.0%
!! AAACAATTAAAATTTATGAA+AGG + chr3_4:56749498-56749517 Msa0508660:intron 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG - chr3_4:56749594-56749613 None:intergenic 10.0%
!! AAATATAATTTATGTTCAAA+TGG + chr3_4:56751260-56751279 Msa0508660:three_prime_UTR 10.0%
!! AGAGAAAATAAAATTTAACA+AGG - chr3_4:56749457-56749476 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG + chr3_4:56749600-56749619 Msa0508660:intron 15.0%
!!! ACACAATTTAATTTTAATTG+TGG - chr3_4:56749739-56749758 None:intergenic 15.0%
!! GACCAAAAAAAAATAAAAAA+TGG + chr3_4:56749793-56749812 Msa0508660:intron 15.0%
!!! TGCCATTTTTTATTTTTTTT+TGG - chr3_4:56749798-56749817 None:intergenic 15.0%
!!! ATATATAATTTTTGAGTGTA+TGG + chr3_4:56750006-56750025 Msa0508660:intron 15.0%
!! AAAATTTCAAAATGAAATGT+AGG - chr3_4:56751154-56751173 None:intergenic 15.0%
!! TTTAAAAACTTCTTGTATTA+TGG - chr3_4:56751381-56751400 None:intergenic 15.0%
!! ATATAGCAATTATAGATATG+TGG - chr3_4:56748290-56748309 None:intergenic 20.0%
!! AATAAAATTTAACAAGGAAG+TGG - chr3_4:56749451-56749470 None:intergenic 20.0%
!!! TGTTTCTATAAATGAACTTT+AGG - chr3_4:56749483-56749502 None:intergenic 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG - chr3_4:56749970-56749989 None:intergenic 20.0%
!! AGATTTATGAGATTCTAATA+AGG + chr3_4:56750295-56750314 Msa0508660:intron 20.0%
!! AATTATCCAATTGATATTTC+AGG + chr3_4:56750420-56750439 Msa0508660:intron 20.0%
!!! AGTGAAGTAATTTTATATCA+AGG - chr3_4:56750749-56750768 None:intergenic 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG + chr3_4:56750858-56750877 Msa0508660:intron 20.0%
!!! TTTAGTTCTAGTCATAAATA+GGG - chr3_4:56751243-56751262 None:intergenic 20.0%
!!! ATTTAGTTCTAGTCATAAAT+AGG - chr3_4:56751244-56751263 None:intergenic 20.0%
! AGTTACAAACTAGCAAATAT+TGG + chr3_4:56748114-56748133 Msa0508660:five_prime_UTR 25.0%
! TTGCATCACAAATATTTATG+TGG - chr3_4:56748190-56748209 None:intergenic 25.0%
!!! TATGTTGAAAAGTTTTGATG+AGG - chr3_4:56748357-56748376 None:intergenic 25.0%
!!! ATAATTTTTTTTTGCAGCCA+TGG + chr3_4:56748374-56748393 Msa0508660:exon 25.0%
! TTGAAATCAAGCTCTTTATT+TGG + chr3_4:56748664-56748683 Msa0508660:CDS 25.0%
!! AATCAACACTTAAGTTTTCA+AGG + chr3_4:56748710-56748729 Msa0508660:CDS 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG + chr3_4:56748711-56748730 Msa0508660:CDS 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG - chr3_4:56748894-56748913 None:intergenic 25.0%
! TGTTGATGTTTGTATATTGT+AGG + chr3_4:56748921-56748940 Msa0508660:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG - chr3_4:56749171-56749190 None:intergenic 25.0%
!!! AAACATGTTTTGTTATGATG+AGG + chr3_4:56749521-56749540 Msa0508660:intron 25.0%
!! GATATTGCATTTTATATGCA+GGG + chr3_4:56749671-56749690 Msa0508660:intron 25.0%
!! ATATTGCATTTTATATGCAG+GGG + chr3_4:56749672-56749691 Msa0508660:intron 25.0%
!!! TAATTTTAATTGTGGAGAAG+TGG - chr3_4:56749731-56749750 None:intergenic 25.0%
! ATAGACCAAAAAAATGTTTG+AGG + chr3_4:56750373-56750392 Msa0508660:intron 25.0%
!!! GATTTCCTCAAACATTTTTT+TGG - chr3_4:56750381-56750400 None:intergenic 25.0%
!! CATTTTCCTGAAATATCAAT+TGG - chr3_4:56750429-56750448 None:intergenic 25.0%
! CAATTGATATTTCAGGAAAA+TGG + chr3_4:56750427-56750446 Msa0508660:intron 25.0%
! GCAGATTATTGTAAAAGAAA+AGG + chr3_4:56750857-56750876 Msa0508660:intron 25.0%
! CTTGTATTATGGTATGTATT+TGG - chr3_4:56751370-56751389 None:intergenic 25.0%
ATATTTATGTGGTTGTGCTA+TGG - chr3_4:56748179-56748198 None:intergenic 30.0%
! GCTAATGAAACTGTATTTTG+AGG - chr3_4:56748223-56748242 None:intergenic 30.0%
TGCATTGAAAAAAAGAGAGT+GGG - chr3_4:56748319-56748338 None:intergenic 30.0%
TTGCATTGAAAAAAAGAGAG+TGG - chr3_4:56748320-56748339 None:intergenic 30.0%
! ACACAATGTGTTAACTCTTT+TGG + chr3_4:56749057-56749076 Msa0508660:CDS 30.0%
! CACAATGTGTTAACTCTTTT+GGG + chr3_4:56749058-56749077 Msa0508660:CDS 30.0%
! ACAATGTGTTAACTCTTTTG+GGG + chr3_4:56749059-56749078 Msa0508660:CDS 30.0%
!! TTATGCACATAGATTAGTCT+TGG + chr3_4:56749173-56749192 Msa0508660:intron 30.0%
AAAGCCACATATTCATGTTA+TGG - chr3_4:56749220-56749239 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG + chr3_4:56749670-56749689 Msa0508660:intron 30.0%
AATTATGACATACCATCAAC+TGG - chr3_4:56749944-56749963 None:intergenic 30.0%
TCATAATATACGCATCTAAC+AGG + chr3_4:56750034-56750053 Msa0508660:intron 30.0%
GAATTTCTACTTCTTGATGA+AGG + chr3_4:56750256-56750275 Msa0508660:CDS 30.0%
AAATACACATTGAGATACAC+CGG + chr3_4:56750657-56750676 Msa0508660:CDS 30.0%
! TTTTCAATCAAGAGTCCTAA+TGG - chr3_4:56750948-56750967 None:intergenic 30.0%
AGGTTTGAAGAAACATTGTA+TGG + chr3_4:56751074-56751093 Msa0508660:CDS 30.0%
AAACATTGTATGGTTCATCA+AGG + chr3_4:56751084-56751103 Msa0508660:CDS 30.0%
ATCTAAGCATCTAGACATTA+AGG + chr3_4:56751288-56751307 Msa0508660:three_prime_UTR 30.0%
GTAAATTCCGAATTGCTTAA+TGG - chr3_4:56751321-56751340 None:intergenic 30.0%
TGTATAGGAAGAGATATGGT+GGG - chr3_4:56748153-56748172 None:intergenic 35.0%
TTGTATAGGAAGAGATATGG+TGG - chr3_4:56748154-56748173 None:intergenic 35.0%
GTCTTGTATAGGAAGAGATA+TGG - chr3_4:56748157-56748176 None:intergenic 35.0%
GAAAAAAAGAGAGTGGGAAT+GGG - chr3_4:56748313-56748332 None:intergenic 35.0%
TGAAAAAAAGAGAGTGGGAA+TGG - chr3_4:56748314-56748333 None:intergenic 35.0%
! ACATGCTATACTAGTTTCCA+TGG - chr3_4:56748394-56748413 None:intergenic 35.0%
TATTATTGTGCATACCCTGA+AGG - chr3_4:56748487-56748506 None:intergenic 35.0%
GTCATAACCAAATGCGAAAT+TGG + chr3_4:56748748-56748767 Msa0508660:CDS 35.0%
GTAGGAAGAATTCTTGTCAA+AGG + chr3_4:56748939-56748958 Msa0508660:intron 35.0%
! GGCTAACAATCTTCTTTTTG+AGG + chr3_4:56749107-56749126 Msa0508660:CDS 35.0%
ATGTTATGGATCCAATGTCT+AGG - chr3_4:56749206-56749225 None:intergenic 35.0%
GGATCCATAACATGAATATG+TGG + chr3_4:56749213-56749232 Msa0508660:intron 35.0%
! TGAATATGTGGCTTTTATGC+AGG + chr3_4:56749225-56749244 Msa0508660:intron 35.0%
AGTTCTTGTAGGAATCTCAT+TGG - chr3_4:56749295-56749314 None:intergenic 35.0%
AGCTCATGGAGATAATAAGA+TGG - chr3_4:56749635-56749654 None:intergenic 35.0%
TAATATACGCATCTAACAGG+AGG + chr3_4:56750037-56750056 Msa0508660:intron 35.0%
GTAGACACAAATTTCACAGT+AGG + chr3_4:56750100-56750119 Msa0508660:CDS 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG + chr3_4:56750148-56750167 Msa0508660:CDS 35.0%
CTTAAGTGCAAGTACATAAG+TGG - chr3_4:56750218-56750237 None:intergenic 35.0%
CACTTATGTACTTGCACTTA+AGG + chr3_4:56750216-56750235 Msa0508660:CDS 35.0%
AAGTAGAAATTCATGAGTGC+CGG - chr3_4:56750248-56750267 None:intergenic 35.0%
GTCAAAGAGACTCATGAAAT+TGG + chr3_4:56750456-56750475 Msa0508660:CDS 35.0%
ATAATCTGCATTGTCAAACG+TGG - chr3_4:56750517-56750536 None:intergenic 35.0%
TGACAATGCAGATTATGCTA+AGG + chr3_4:56750521-56750540 Msa0508660:CDS 35.0%
!! TTCGTTTTTCATCCCTTAGT+TGG + chr3_4:56750614-56750633 Msa0508660:intron 35.0%
CATAGTAATCGACCAACTAA+GGG - chr3_4:56750629-56750648 None:intergenic 35.0%
ACATAGTAATCGACCAACTA+AGG - chr3_4:56750630-56750649 None:intergenic 35.0%
AAAAGAACCTGGTTAACATC+CGG - chr3_4:56750693-56750712 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG - chr3_4:56750704-56750723 None:intergenic 35.0%
! GATAGAACTCAAGTTGCTTA+TGG + chr3_4:56751032-56751051 Msa0508660:CDS 35.0%
TGCTTATGGATCAAAGAATG+AGG + chr3_4:56751046-56751065 Msa0508660:CDS 35.0%
GATCAAAGAATGAGGTCATT+AGG + chr3_4:56751054-56751073 Msa0508660:CDS 35.0%
ATGTCTAGATGCTTAGATGT+TGG - chr3_4:56751286-56751305 None:intergenic 35.0%
CTTCCTTCCATTAAGCAATT+CGG + chr3_4:56751311-56751330 Msa0508660:three_prime_UTR 35.0%
ATTCCGAATTGCTTAATGGA+AGG - chr3_4:56751317-56751336 None:intergenic 35.0%
AAGCAATTCGGAATTTACAC+AGG + chr3_4:56751323-56751342 Msa0508660:three_prime_UTR 35.0%
! GAATTTACACAGGTTGAGTT+TGG + chr3_4:56751333-56751352 Msa0508660:three_prime_UTR 35.0%
GTATGTATTTGGACTACACA+TGG - chr3_4:56751359-56751378 None:intergenic 35.0%
TATAGGAAGAGATATGGTGG+GGG - chr3_4:56748151-56748170 None:intergenic 40.0%
GTATAGGAAGAGATATGGTG+GGG - chr3_4:56748152-56748171 None:intergenic 40.0%
!! GTTGTGCTATGGTCTTGTAT+AGG - chr3_4:56748168-56748187 None:intergenic 40.0%
GTGGCATGTGATGAATAGAT+AGG - chr3_4:56748245-56748264 None:intergenic 40.0%
TCTATTCATCACATGCCACA+TGG + chr3_4:56748246-56748265 Msa0508660:five_prime_UTR 40.0%
ATTATGCATGTAGTGCCATG+TGG - chr3_4:56748264-56748283 None:intergenic 40.0%
AGTATAGCATGTTACTCCAG+TGG + chr3_4:56748402-56748421 Msa0508660:CDS 40.0%
TGGTGAGTTACTTACATGTG+TGG + chr3_4:56748779-56748798 Msa0508660:intron 40.0%
AACCTAATCAGTCCCTTATC+CGG - chr3_4:56748970-56748989 None:intergenic 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG + chr3_4:56748972-56748991 Msa0508660:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG + chr3_4:56748982-56749001 Msa0508660:CDS 40.0%
AAAGTGAAGACAGCTTCTTG+TGG + chr3_4:56749030-56749049 Msa0508660:CDS 40.0%
TTGGTCCAATTCCTAGACAT+TGG + chr3_4:56749192-56749211 Msa0508660:intron 40.0%
TGGATCCAATGTCTAGGAAT+TGG - chr3_4:56749200-56749219 None:intergenic 40.0%
AGGTGTGGAAAAGTTCTTGT+AGG - chr3_4:56749306-56749325 None:intergenic 40.0%
CTTCGGGATAACACACTTAA+AGG + chr3_4:56749334-56749353 Msa0508660:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr3_4:56749782-56749801 None:intergenic 40.0%
GTCACCAAATTTCTATGCAC+AGG + chr3_4:56749847-56749866 Msa0508660:intron 40.0%
AAGGCCTGTGCATAGAAATT+TGG - chr3_4:56749854-56749873 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG - chr3_4:56750081-56750100 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG - chr3_4:56750082-56750101 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG - chr3_4:56750145-56750164 None:intergenic 40.0%
GCAAGTACATAAGTGGTTCT+AGG - chr3_4:56750211-56750230 None:intergenic 40.0%
AGTAGAAATTCATGAGTGCC+GGG - chr3_4:56750247-56750266 None:intergenic 40.0%
GAGACTCATGAAATTGGTGA+AGG + chr3_4:56750462-56750481 Msa0508660:CDS 40.0%
CTCAAACAACAGTCTCAACT+TGG - chr3_4:56750919-56750938 None:intergenic 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG + chr3_4:56750917-56750936 Msa0508660:CDS 40.0%
! TTGTTTGAGGTAGCTCCATT+AGG + chr3_4:56750930-56750949 Msa0508660:CDS 40.0%
GGACTCTTGATTGAAAATGC+TGG + chr3_4:56750951-56750970 Msa0508660:CDS 40.0%
CTCTTGATTGAAAATGCTGG+AGG + chr3_4:56750954-56750973 Msa0508660:CDS 40.0%
CCTTGTCTAGCACAGATTTA+TGG - chr3_4:56750995-56751014 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG + chr3_4:56750992-56751011 Msa0508660:CDS 40.0%
TATGGTTCATCAAGGCTCAA+GGG + chr3_4:56751092-56751111 Msa0508660:CDS 40.0%
! ATAGGAAGAGATATGGTGGG+GGG - chr3_4:56748150-56748169 None:intergenic 45.0%
!! ACTACGAAGAAAAGCACCAC+TGG - chr3_4:56748421-56748440 None:intergenic 45.0%
ACTGTCGCCAATTTCGCATT+TGG - chr3_4:56748758-56748777 None:intergenic 45.0%
ATGCGAAATTGGCGACAGTT+TGG + chr3_4:56748759-56748778 Msa0508660:CDS 45.0%
ATTCTTGTCAAAGGCGACAC+CGG + chr3_4:56748948-56748967 Msa0508660:CDS 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG + chr3_4:56748981-56749000 Msa0508660:CDS 45.0%
GCAACTTGCAGTGGATATTC+TGG + chr3_4:56749086-56749105 Msa0508660:CDS 45.0%
! TCCACACCTAGAATCGACTT+CGG + chr3_4:56749317-56749336 Msa0508660:intron 45.0%
! GTTATCCCGAAGTCGATTCT+AGG - chr3_4:56749326-56749345 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+TGG - chr3_4:56749649-56749668 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr3_4:56749648-56749667 Msa0508660:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr3_4:56749649-56749668 Msa0508660:intron 45.0%
! TGCATTTTATATGCAGGGGC+CGG + chr3_4:56749676-56749695 Msa0508660:intron 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG - chr3_4:56749873-56749892 None:intergenic 45.0%
AATCCCTGAGCTTCAAGACA+TGG + chr3_4:56749913-56749932 Msa0508660:CDS 45.0%
ATCCCTGAGCTTCAAGACAT+GGG + chr3_4:56749914-56749933 Msa0508660:CDS 45.0%
GTTGCATTTGACCCTCTTGA+TGG + chr3_4:56750067-56750086 Msa0508660:CDS 45.0%
TTCACAGTAGGCACCATCTT+TGG + chr3_4:56750112-56750131 Msa0508660:CDS 45.0%
! TAGGCACCATCTTTGGTGTA+TGG + chr3_4:56750119-56750138 Msa0508660:CDS 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG + chr3_4:56750139-56750158 Msa0508660:CDS 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG + chr3_4:56750174-56750193 Msa0508660:CDS 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG + chr3_4:56750175-56750194 Msa0508660:CDS 45.0%
! GTAGAAATTCATGAGTGCCG+GGG - chr3_4:56750246-56750265 None:intergenic 45.0%
GAAGGAAAACTATTCTCCCC+TGG + chr3_4:56750480-56750499 Msa0508660:CDS 45.0%
ACGTGGCTCTCAAATTTCCA+GGG - chr3_4:56750500-56750519 None:intergenic 45.0%
AACGTGGCTCTCAAATTTCC+AGG - chr3_4:56750501-56750520 None:intergenic 45.0%
TACACATTGAGATACACCGG+AGG + chr3_4:56750660-56750679 Msa0508660:CDS 45.0%
ATTGAGATACACCGGAGGAA+TGG + chr3_4:56750665-56750684 Msa0508660:CDS 45.0%
CAACAGTCTCAACTTGGCTT+TGG - chr3_4:56750913-56750932 None:intergenic 45.0%
GTATGGTTCATCAAGGCTCA+AGG + chr3_4:56751091-56751110 Msa0508660:CDS 45.0%
! TAGGAAGAGATATGGTGGGG+GGG - chr3_4:56748149-56748168 None:intergenic 50.0%
CATACCCTGAAGGCAGAAGA+GGG - chr3_4:56748477-56748496 None:intergenic 50.0%
TCAAAGGCGACACCGGATAA+GGG + chr3_4:56748955-56748974 Msa0508660:CDS 50.0%
CACCGGATAAGGGACTGATT+AGG + chr3_4:56748965-56748984 Msa0508660:CDS 50.0%
GTGAAGACAGCTTCTTGTGG+TGG + chr3_4:56749033-56749052 Msa0508660:CDS 50.0%
! CCACACCTAGAATCGACTTC+GGG + chr3_4:56749318-56749337 Msa0508660:intron 50.0%
CTCCATGAGCTTAGCTCAGT+TGG + chr3_4:56749644-56749663 Msa0508660:intron 50.0%
! GCATTTTATATGCAGGGGCC+GGG + chr3_4:56749677-56749696 Msa0508660:intron 50.0%
! CATTTTATATGCAGGGGCCG+GGG + chr3_4:56749678-56749697 Msa0508660:intron 50.0%
TGTGGAGAAGTGGAGAGAAG+TGG - chr3_4:56749721-56749740 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3_4:56749753-56749772 Msa0508660:intron 50.0%
CTCCCATGTCTTGAAGCTCA+GGG - chr3_4:56749919-56749938 None:intergenic 50.0%
! ACCATCTTTGGTGTATGGCC+TGG + chr3_4:56750124-56750143 Msa0508660:CDS 50.0%
ACCAGGCCATACACCAAAGA+TGG - chr3_4:56750128-56750147 None:intergenic 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG + chr3_4:56750184-56750203 Msa0508660:CDS 50.0%
CTTGCACTTAAGGACTTCCC+CGG + chr3_4:56750226-56750245 Msa0508660:CDS 50.0%
CGTGGCTCTCAAATTTCCAG+GGG - chr3_4:56750499-56750518 None:intergenic 50.0%
! AATGGTGCCGGATGTTAACC+AGG + chr3_4:56750683-56750702 Msa0508660:CDS 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG - chr3_4:56750906-56750925 None:intergenic 50.0%
GCTTAAGCACTTGCTCCAAC+AGG - chr3_4:56751125-56751144 None:intergenic 50.0%
!! GATGGAGGGTAGGGAGTGTT+TGG - chr3_4:56748451-56748470 None:intergenic 55.0%
! AGAGGGAGTGATGGAGGGTA+GGG - chr3_4:56748460-56748479 None:intergenic 55.0%
! AAGAGGGAGTGATGGAGGGT+AGG - chr3_4:56748461-56748480 None:intergenic 55.0%
! GCAGAAGAGGGAGTGATGGA+GGG - chr3_4:56748465-56748484 None:intergenic 55.0%
GAAGGCAGAAGAGGGAGTGA+TGG - chr3_4:56748469-56748488 None:intergenic 55.0%
TCACTCCCTCTTCTGCCTTC+AGG + chr3_4:56748469-56748488 Msa0508660:CDS 55.0%
CACTCCCTCTTCTGCCTTCA+GGG + chr3_4:56748470-56748489 Msa0508660:CDS 55.0%
GCATACCCTGAAGGCAGAAG+AGG - chr3_4:56748478-56748497 None:intergenic 55.0%
GTCAAAGGCGACACCGGATA+AGG + chr3_4:56748954-56748973 Msa0508660:CDS 55.0%
TGGGGATGAGCAACTTGCAG+TGG + chr3_4:56749077-56749096 Msa0508660:CDS 55.0%
! CCCGAAGTCGATTCTAGGTG+TGG - chr3_4:56749321-56749340 None:intergenic 55.0%
! TGGAGAGAAGTGGAGTGTCC+GGG - chr3_4:56749711-56749730 None:intergenic 55.0%
! GTGGAGAGAAGTGGAGTGTC+CGG - chr3_4:56749712-56749731 None:intergenic 55.0%
CTAGCCACTAGGCTACCACT+AGG + chr3_4:56749764-56749783 Msa0508660:intron 55.0%
GTAGCCTAGTGGTAGCCTAG+TGG - chr3_4:56749771-56749790 None:intergenic 55.0%
CCTCCCATGTCTTGAAGCTC+AGG - chr3_4:56749920-56749939 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG + chr3_4:56749917-56749936 Msa0508660:CDS 55.0%
GACATGGGAGGTCCAGTTGA+TGG + chr3_4:56749929-56749948 Msa0508660:CDS 55.0%
ATACACCGGAGGAATGGTGC+CGG + chr3_4:56750671-56750690 Msa0508660:CDS 55.0%
AACATCCGGCACCATTCCTC+CGG - chr3_4:56750679-56750698 None:intergenic 55.0%
GCTGGAGGTTACAGCAGTGA+TGG + chr3_4:56750969-56750988 Msa0508660:CDS 55.0%
GGTTCATCAAGGCTCAAGGG+TGG + chr3_4:56751095-56751114 Msa0508660:CDS 55.0%
CTCAAGGGTGGTGTACCTGT+TGG + chr3_4:56751107-56751126 Msa0508660:CDS 55.0%
GGCAGAAGAGGGAGTGATGG+AGG - chr3_4:56748466-56748485 None:intergenic 60.0%
! GGAGAGAAGTGGAGTGTCCG+GGG - chr3_4:56749710-56749729 None:intergenic 60.0%
AGTGTCCGGGGTTCGAACCC+CGG - chr3_4:56749698-56749717 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG + chr3_4:56749690-56749709 Msa0508660:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 56748097 56751404 56748097 ID=Msa0508660;Name=Msa0508660
chr3_4 mRNA 56748097 56751404 56748097 ID=Msa0508660-mRNA-1;Parent=Msa0508660;Name=Msa0508660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=296|1|1|1|1|1|8|262|387
chr3_4 exon 56748097 56748491 56748097 ID=Msa0508660-mRNA-1:exon:12840;Parent=Msa0508660-mRNA-1
chr3_4 exon 56748661 56748780 56748661 ID=Msa0508660-mRNA-1:exon:12841;Parent=Msa0508660-mRNA-1
chr3_4 exon 56748943 56749128 56748943 ID=Msa0508660-mRNA-1:exon:12842;Parent=Msa0508660-mRNA-1
chr3_4 exon 56749869 56749950 56749869 ID=Msa0508660-mRNA-1:exon:12843;Parent=Msa0508660-mRNA-1
chr3_4 exon 56750056 56750277 56750056 ID=Msa0508660-mRNA-1:exon:12844;Parent=Msa0508660-mRNA-1
chr3_4 exon 56750442 56750542 56750442 ID=Msa0508660-mRNA-1:exon:12845;Parent=Msa0508660-mRNA-1
chr3_4 exon 56750633 56750704 56750633 ID=Msa0508660-mRNA-1:exon:12846;Parent=Msa0508660-mRNA-1
chr3_4 exon 56750861 56751404 56750861 ID=Msa0508660-mRNA-1:exon:12847;Parent=Msa0508660-mRNA-1
chr3_4 five_prime_UTR 56748097 56748392 56748097 ID=Msa0508660-mRNA-1:five_prime_utr;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56748393 56748491 56748393 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56748661 56748780 56748661 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56748943 56749128 56748943 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56749869 56749950 56749869 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56750056 56750277 56750056 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56750442 56750542 56750442 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56750633 56750704 56750633 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 CDS 56750861 56751142 56750861 ID=Msa0508660-mRNA-1:cds;Parent=Msa0508660-mRNA-1
chr3_4 three_prime_UTR 56751143 56751404 56751143 ID=Msa0508660-mRNA-1:three_prime_utr;Parent=Msa0508660-mRNA-1
Gene Sequence

>Msa0508660

ATGGAAACTAGTATAGCATGTTACTCCAGTGGTGCTTTTCTTCGTAGTGTTTCTGCCAAACACTCCCTACCCTCCATCACTCCCTCTTCTGCCTTCAGGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGCAAAGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATTCTGGCTAACAATCTTCTTTTTGAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGTCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTCTACTTCTTGATGAAGGAAAATGGCAGCATGTCAAAGAGACTCATGAAATTGGTGAAGGAAAACTATTCTCCCCTGGAAATTTGAGAGCCACGTTTGACAATGCAGATTATGCTAAGTTGGTCGATTACTATGTTAGAGAAAAATACACATTGAGATACACCGGAGGAATGGTGCCGGATGTTAACCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCATTAGGACTCTTGATTGAAAATGCTGGAGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGGTTTGAAGAAACATTGTATGGTTCATCAAGGCTCAAGGGTGGTGTACCTGTTGGAGCAAGTGCTTAA

Protein sequence

>Msa0508660

METSIACYSSGAFLRSVSAKHSLPSITPSSAFRSLKSSSLFGESLRVSSKSTLKFSRAKSTSVITKCEIGDSLEEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDILANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVIRFEETLYGSSRLKGGVPVGASA*