AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002690 MtrunA17_Chr1g0173381 100.000 1383 0 0 1 1383 1 1383 0.0 2855
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002690 AT5G13630.1 85.177 1383 203 1 1 1383 1 1381 0.0 2480
Msa0002690 AT5G13630.2 84.841 1260 189 1 1 1260 1 1258 0.0 2247

Find 346 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTTGTTCAAAATTTA+AGG 0.029079 1_1:-4832805 Msa0002690:CDS
TTTCCTGTTGGTAAAACTTT+AGG 0.150723 1_1:+4833797 None:intergenic
CCAAGCTCTTCAAGGCTTAC+AGG 0.177877 1_1:+4833527 None:intergenic
CCTATCACCTCGGTAAAATT+TGG 0.179718 1_1:+4833958 None:intergenic
CAATCTCTCTACCACTATTT+TGG 0.194233 1_1:+4833718 None:intergenic
CCACAGCATTAGAAGAAAAT+TGG 0.204481 1_1:-4834975 Msa0002690:CDS
CTCACTGGATTTGCTCTTGT+TGG 0.205906 1_1:-4836701 Msa0002690:CDS
AATTTCTTGAAGATGATTTC+TGG 0.209710 1_1:-4837100 Msa0002690:CDS
AGTTGATCAACTTTAGAATT+TGG 0.219361 1_1:+4837838 None:intergenic
TTAGAATTTGGTAGAGTAAA+TGG 0.219936 1_1:+4837850 None:intergenic
TTCCTGTTGGTAAAACTTTA+GGG 0.231681 1_1:+4833798 None:intergenic
TCTAGCCCTCCGGCGAAAAT+TGG 0.232885 1_1:+4836797 None:intergenic
TCCAATGAAAACGGTTTCTA+TGG 0.257552 1_1:+4838166 None:intergenic
ACAAATGGTTTCTTAGTAAT+AGG 0.269270 1_1:+4836740 None:intergenic
CAAAGGAGTCATATTGTTAC+TGG 0.270706 1_1:-4836881 Msa0002690:CDS
ATGATGAGGGCTTGCAGATT+TGG 0.274240 1_1:+4834822 None:intergenic
AAGAAATTCTGCAAATTATC+AGG 0.274265 1_1:+4837115 None:intergenic
ATATCTTGAGTCTACAGTTT+TGG 0.275285 1_1:-4837150 Msa0002690:CDS
TATAAAATTGGAAGATATAT+TGG 0.277815 1_1:+4831792 None:intergenic
TCTTCTTCAGATGAATCTTC+TGG 0.278031 1_1:-4833212 Msa0002690:intron
CATGTCTTTATATATAAAAT+TGG 0.280339 1_1:+4831780 None:intergenic
CTCATCCCTACCTGCTTTCC+AGG 0.282649 1_1:+4834709 None:intergenic
AAGCCAATGGACGCGGATAT+TGG 0.283143 1_1:-4832110 Msa0002690:CDS
TCATTACGTTGCTGTGATTA+TGG 0.283792 1_1:-4836849 Msa0002690:CDS
GCTGATGCTGTTCTTCATTT+CGG 0.304689 1_1:-4834757 Msa0002690:CDS
GCATTTGCAACTGCACAAAA+AGG 0.305978 1_1:+4831828 None:intergenic
GGACAGGATGGATGCAGTTT+TGG 0.317279 1_1:-4837386 Msa0002690:CDS
TTGTAAGCAATGTTGAGATT+TGG 0.321057 1_1:+4835036 None:intergenic
TTTCCGATGAGTCAAGGTTT+TGG 0.325504 1_1:+4832870 None:intergenic
AACATGCCTTCATACCATTT+GGG 0.328582 1_1:+4832330 None:intergenic
GGTGATGAGGTTGAACAAAT+TGG 0.329239 1_1:-4837344 Msa0002690:CDS
CAGTGACAAAGGAGTATTAA+AGG 0.335696 1_1:-4834146 Msa0002690:CDS
GCTCAGGTTCTGTGGATGAT+TGG 0.337444 1_1:-4833596 Msa0002690:CDS
AGTGGCAAAGCAACAATATA+AGG 0.338462 1_1:+4836620 None:intergenic
GTTGGATGGAGTGCAACTTC+TGG 0.339333 1_1:-4832255 Msa0002690:CDS
AAGATGAAATCTCTATATAA+TGG 0.339641 1_1:+4831754 None:intergenic
TAACATGCCTTCATACCATT+TGG 0.343041 1_1:+4832329 None:intergenic
TATGGTTAGTGGTGAAAGTT+TGG 0.345707 1_1:+4838184 None:intergenic
CTTCTGGACAAGTTGACAAT+TGG 0.346443 1_1:-4832239 Msa0002690:CDS
CTCATCACCTCAGGCATTGA+TGG 0.348300 1_1:+4837358 None:intergenic
ACACTCTGAGCTAGTATAGA+AGG 0.354279 1_1:+4834199 None:intergenic
CACAGCATTAGAAGAAAATT+GGG 0.354684 1_1:-4834974 Msa0002690:CDS
GAAGATGCTAATATCTTCAT+TGG 0.357021 1_1:-4837469 Msa0002690:CDS
GTTCCTACATTTCCTTTGTC+TGG 0.357797 1_1:+4835204 None:intergenic
GAAGCTGGTGCAAACATTCT+TGG 0.362090 1_1:-4832133 Msa0002690:CDS
TGTAAGCAATGTTGAGATTT+GGG 0.367376 1_1:+4835037 None:intergenic
CACAGCCAGGTTTATGTTTG+AGG 0.367959 1_1:+4833042 None:intergenic
GCACAAATCCCAACTCCTTC+AGG 0.369393 1_1:-4832155 Msa0002690:CDS
ATCGGGTCGCCTCCAGGTCC+TGG 0.370873 1_1:+4833827 None:intergenic
ATATATTGGCTAAGTTTGTT+TGG 0.371388 1_1:+4831806 None:intergenic
AACCAAGTTTCAGAGAAATA+AGG 0.371756 1_1:+4831960 None:intergenic
TGCATTGCATTTCAATCTAA+AGG 0.373359 1_1:+4837735 None:intergenic
CTCTGCTGGTTCGTCTAATT+CGG 0.375638 1_1:+4833168 None:intergenic
AAATGCACCTGTTGTTGGTT+TGG 0.377667 1_1:-4836909 Msa0002690:CDS
TGTTGGAGGGCCTGCTAGAC+AGG 0.383679 1_1:-4836684 Msa0002690:CDS
GTTCAAAATTTAAGGAAAGA+TGG 0.385666 1_1:-4832797 Msa0002690:CDS
GCAGCATAGTAATAGACATT+TGG 0.387540 1_1:+4834649 None:intergenic
AAACTTTAGGGTTTCTGATC+GGG 0.387766 1_1:+4833810 None:intergenic
GGAGAGAATCTGTTGGTATA+TGG 0.388264 1_1:-4834922 Msa0002690:CDS
TGAATTGGTATGGAACTAGA+AGG 0.388661 1_1:-4836958 Msa0002690:CDS
AACAAGATCTCGCTCTTTAG+TGG 0.389853 1_1:+4834378 None:intergenic
ATAGGTGTTCAACCTACATT+TGG 0.390010 1_1:-4834877 Msa0002690:CDS
TTTCTGATCGGGTCGCCTCC+AGG 0.395290 1_1:+4833821 None:intergenic
TCAACCACTCTTCAGTTGTC+TGG 0.395716 1_1:+4836591 None:intergenic
ACTTGAAGAGCAACTTGAAT+TGG 0.395908 1_1:+4836548 None:intergenic
AGCCAATGGACGCGGATATT+GGG 0.396390 1_1:-4832109 Msa0002690:CDS
CCTAAGAAAACCAATTACTA+TGG 0.396414 1_1:-4837772 Msa0002690:CDS
CTGATACCTGATTGATGAAA+AGG 0.396424 1_1:+4833456 None:intergenic
CTTACATAGTTCATCTCTGC+TGG 0.399333 1_1:+4833154 None:intergenic
TTGGTATATGGTAAGCAATA+TGG 0.404856 1_1:-4834910 Msa0002690:CDS
AATTGCTCCGCGTGATGCTT+CGG 0.405221 1_1:+4834099 None:intergenic
TTATATTGTTGCTTTGCCAC+TGG 0.407521 1_1:-4836618 Msa0002690:CDS
TTACAATAAAGAGCAAGTTT+TGG 0.407523 1_1:+4837948 None:intergenic
CAGGTTTATGTTTGAGGAGT+AGG 0.410638 1_1:+4833048 None:intergenic
TTTCTTCTTGTTCTTCTATG+TGG 0.410823 1_1:+4838098 None:intergenic
ACTGGATTTGCTCTTGTTGG+AGG 0.412121 1_1:-4836698 Msa0002690:CDS
AGTTCAAATGCACCTGTTGT+TGG 0.412786 1_1:-4836914 Msa0002690:CDS
ATCTTTGTACCTTTCAATGC+TGG 0.413975 1_1:+4837067 None:intergenic
GAGTGGTTGAATAGTACTTT+GGG 0.415105 1_1:-4836578 Msa0002690:CDS
AAAGAGCGAGATCTTGTTGT+TGG 0.415342 1_1:-4834373 Msa0002690:CDS
CTGGATTTGCTCTTGTTGGA+GGG 0.415619 1_1:-4836697 Msa0002690:CDS
TAAAGGATGTAGAGCTTCTT+CGG 0.416816 1_1:-4834129 Msa0002690:CDS
CCTTGTGGACTCCATGTCAT+TGG 0.417130 1_1:-4834307 Msa0002690:CDS
AAATTTGGGTTGATGATCAA+TGG 0.418917 1_1:-4837890 Msa0002690:exon
CTAGTGGTTATGAGGGTGTT+CGG 0.420010 1_1:-4832305 Msa0002690:CDS
ACCAGCTTCCTGAAGGAGTT+GGG 0.423566 1_1:+4832147 None:intergenic
AGATTGAAATGCAATGCAAT+TGG 0.427450 1_1:-4837730 Msa0002690:CDS
AAGAAGAATACTTCTTCAGC+TGG 0.430435 1_1:-4837262 Msa0002690:CDS
CAATATGGTAATGTATTCAT+AGG 0.430782 1_1:-4834895 Msa0002690:CDS
GCTTTCCAGGCATGAATTCA+AGG 0.431681 1_1:+4834722 None:intergenic
AAAGAGTATTTGAATTGGTA+TGG 0.436541 1_1:-4836968 Msa0002690:CDS
AGTACAAGGGCAACTGTCTC+AGG 0.436994 1_1:+4833659 None:intergenic
GGAAGCTCCACACCCTCCTC+TGG 0.436994 1_1:+4834400 None:intergenic
GATTGTGATGCTCCTGGTGC+AGG 0.439076 1_1:-4832950 Msa0002690:CDS
TAGGTCTTCCAAGCTCTTCA+AGG 0.440235 1_1:+4833519 None:intergenic
TGGCTGTGGAGAATTCTTCA+TGG 0.440253 1_1:-4833027 Msa0002690:CDS
CGAAAATGCAGGACTGTACA+AGG 0.441945 1_1:-4834551 Msa0002690:CDS
CACCAGCTTCCTGAAGGAGT+TGG 0.442281 1_1:+4832146 None:intergenic
CTCTACAAATTTACCTTCCA+AGG 0.442552 1_1:+4833850 None:intergenic
TGGAGGAGTAAGATAGCTTA+TGG 0.442966 1_1:+4834576 None:intergenic
TAGTGGTTATGAGGGTGTTC+GGG 0.443943 1_1:-4832304 Msa0002690:CDS
TTCTGCTAAGGTACATGTCT+TGG 0.445406 1_1:+4832987 None:intergenic
TTGGCTATGGTAGCCTCTGA+AGG 0.445632 1_1:+4834619 None:intergenic
GAAAATTGGGGAAAGCCTCC+TGG 0.445986 1_1:-4834961 Msa0002690:CDS
ACAGATAATATTAAGACATA+TGG 0.446503 1_1:-4833629 Msa0002690:CDS
GCTGGTCGGGATCCCAAAAC+AGG 0.449426 1_1:-4836482 Msa0002690:intron
AAATGCAATGCAATTGGTAA+TGG 0.450220 1_1:-4837724 Msa0002690:CDS
ATCAAAGCTTCAATAGCCCT+TGG 0.450638 1_1:+4836656 None:intergenic
AGCAACTGCTTCCATGGCTG+TGG 0.450885 1_1:+4834276 None:intergenic
GGGAAGTTTAAAACAAGCCT+TGG 0.450982 1_1:-4833867 Msa0002690:CDS
GCATCTTGAGCTTTATCACT+TGG 0.453125 1_1:+4837181 None:intergenic
CATGGAGTCCACAAGGCAAC+AGG 0.453384 1_1:+4834314 None:intergenic
ATTTGCGTAGCTCCTGCGTT+TGG 0.458715 1_1:+4834600 None:intergenic
GTTGCATTGCCAGAGCTAGA+TGG 0.458979 1_1:-4836527 Msa0002690:CDS
CTTACCTCCATCCTTGGATT+CGG 0.459055 1_1:-4834016 Msa0002690:CDS
TCCCAACTCCTTCAGGAAGC+TGG 0.459347 1_1:-4832148 Msa0002690:CDS
AGAGTGGTTGAATAGTACTT+TGG 0.460158 1_1:-4836579 Msa0002690:CDS
TTCAAAATTTAAGGAAAGAT+GGG 0.460190 1_1:-4832796 Msa0002690:CDS
AATAAACTTACCTCCATCCT+TGG 0.461503 1_1:-4834022 Msa0002690:CDS
TTCTGGACAAGTTGACAATT+GGG 0.462149 1_1:-4832238 Msa0002690:CDS
ATAGTTTCTTCCAATGAAAA+CGG 0.462623 1_1:+4838157 None:intergenic
CTACATTTCCTTTGTCTGGC+GGG 0.463784 1_1:+4835208 None:intergenic
GTCTTGAATGAATGTTGTGT+TGG 0.464042 1_1:+4832203 None:intergenic
CTCTCCATTGCTGCTGTAGT+AGG 0.464264 1_1:+4833743 None:intergenic
GGTAAATACTTCAAAACCTT+AGG 0.465580 1_1:+4837202 None:intergenic
GACGTCGTCGTTAATTGCTC+TGG 0.466194 1_1:-4833491 Msa0002690:CDS
GGTTCCCTTGAATTCATGCC+TGG 0.466716 1_1:-4834727 Msa0002690:CDS
TCTTCTAATGCTGTGGCATA+GGG 0.468263 1_1:+4834982 None:intergenic
TGAGGGAAAGATGGTATTTG+AGG 0.468383 1_1:+4837974 None:intergenic
AAATGGAGGAGAAAACGTTT+AGG 0.469039 1_1:+4835172 None:intergenic
CAATGTAGCAACTGCTTCCA+TGG 0.470298 1_1:+4834270 None:intergenic
AGTACTTGGGAGAATGTTTG+AGG 0.471779 1_1:-4833913 Msa0002690:CDS
CATACATACAAGGTGCTAAA+GGG 0.474043 1_1:+4836999 None:intergenic
TGAGAAACACAACTCAACTT+TGG 0.474199 1_1:-4838041 Msa0002690:five_prime_UTR
TTCTTCTAATGCTGTGGCAT+AGG 0.474834 1_1:+4834981 None:intergenic
CAGCAGAGATGAACTATGTA+AGG 0.475157 1_1:-4833153 Msa0002690:CDS
CTTGGATGATCCTGTCTAGC+AGG 0.475362 1_1:+4836674 None:intergenic
TACCTTATTTCTCTGAAACT+TGG 0.477509 1_1:-4831962 Msa0002690:three_prime_UTR
TGAATTCATGCCTGGAAAGC+AGG 0.481681 1_1:-4834719 Msa0002690:CDS
TAGGAATAGATTGTGGATCC+AGG 0.482376 1_1:+4833762 None:intergenic
AGAGCGCACTACTAATAGTA+AGG 0.482393 1_1:-4834065 Msa0002690:CDS
AATCAATGCTTCTGAAGTCT+CGG 0.483709 1_1:+4835098 None:intergenic
GAGTGGAGCAGCTTTGCACC+AGG 0.483821 1_1:-4835968 Msa0002690:CDS
TGCAAAACCAAACCAACAAC+AGG 0.486344 1_1:+4836902 None:intergenic
CATGGAAGCAGTTGCTACAT+TGG 0.487820 1_1:-4834269 Msa0002690:CDS
TTCCCAATATCCGCGTCCAT+TGG 0.488102 1_1:+4832107 None:intergenic
TACATTAACAATGATGCCAT+TGG 0.489859 1_1:+4831913 None:intergenic
CATGTTATCTAGTGGTTATG+AGG 0.489935 1_1:-4832313 Msa0002690:CDS
AAAACGGTTTCTATGGTTAG+TGG 0.490304 1_1:+4838173 None:intergenic
TCCATTCCTCCATCTAGCTC+TGG 0.490366 1_1:+4836518 None:intergenic
GTAGCTCCTGCGTTTGGCTA+TGG 0.491501 1_1:+4834606 None:intergenic
TATCTGTTCCCCACAGTACA+AGG 0.491790 1_1:+4833645 None:intergenic
TACCTGGGCATTGGCAGTGG+TGG 0.492165 1_1:+4832745 None:intergenic
AATCCCTTGCTCAGGTTCTG+TGG 0.492849 1_1:-4833604 Msa0002690:CDS
CCAAGCTGTTGAACCCCAAA+TGG 0.494653 1_1:-4832344 Msa0002690:CDS
TCATACATACAAGGTGCTAA+AGG 0.498214 1_1:+4836998 None:intergenic
AGTGATGGTTACAATGTTGA+AGG 0.498990 1_1:-4835126 Msa0002690:CDS
ACGTGGCAAAATGTAGTCAT+TGG 0.500416 1_1:+4838210 None:intergenic
CCATTTGGGGTTCAACAGCT+TGG 0.501266 1_1:+4832344 None:intergenic
AAGCTGCTGTTGAGAAAGAA+AGG 0.502411 1_1:-4837408 Msa0002690:CDS
GATATCACAGAATTCACAAA+TGG 0.502956 1_1:+4836725 None:intergenic
TTTCCAAAACCTTGACTCAT+CGG 0.503416 1_1:-4832873 Msa0002690:CDS
ATGAAGAATTCTCCACAGCC+AGG 0.504233 1_1:+4833029 None:intergenic
ATGTCAAAGAGTATTTGAAT+TGG 0.504263 1_1:-4836973 Msa0002690:CDS
CTTCTCGAACTTCAACCCCT+AGG 0.505192 1_1:+4833104 None:intergenic
CTCAGCCCATCTGATTGCCC+TGG 0.505958 1_1:+4835950 None:intergenic
AAGAAAACATTGAGAAGTTG+AGG 0.507918 1_1:-4832077 Msa0002690:CDS
TTGTTCAACCTCATCACCTC+AGG 0.508260 1_1:+4837349 None:intergenic
GGAGTAGGATCCTGAGGCAT+TGG 0.508323 1_1:+4833063 None:intergenic
TTCTCGAACTTCAACCCCTA+GGG 0.508890 1_1:+4833105 None:intergenic
ATCAATGCTTCTGAAGTCTC+GGG 0.509386 1_1:+4835099 None:intergenic
AAAACTTTAGGGTTTCTGAT+CGG 0.510451 1_1:+4833809 None:intergenic
TCAATGAAGAACTTCTCAAC+CGG 0.510611 1_1:+4836764 None:intergenic
AAATTTGTAGAGCCAGGACC+TGG 0.510710 1_1:-4833839 Msa0002690:CDS
AAGAGCGAGATCTTGTTGTT+GGG 0.510971 1_1:-4834372 Msa0002690:CDS
CTAAAAGAACTTCAAAGTGA+TGG 0.511192 1_1:-4835141 Msa0002690:CDS
TGGTAGAGAGATTGCTTGAA+AGG 0.512014 1_1:-4833709 Msa0002690:CDS
TGGCATAGGGAGTGAGAGCT+TGG 0.512578 1_1:+4834995 None:intergenic
AAGTCGAACTGTCTCTGAAA+GGG 0.514784 1_1:+4832377 None:intergenic
GAAGTGGAAGATAAAATTGA+AGG 0.516822 1_1:-4832042 Msa0002690:CDS
AGGAAAGAATATTCATGCCC+TGG 0.518876 1_1:-4833780 Msa0002690:CDS
GCTTGTGAGGACTTTGCCTA+AGG 0.519621 1_1:-4837218 Msa0002690:CDS
AGGATCTTCTCCAATGCCTC+AGG 0.520022 1_1:-4833073 Msa0002690:CDS
GCATGAATATTCTTTCCTGT+TGG 0.520661 1_1:+4833785 None:intergenic
CCTGTAAGCCTTGAAGAGCT+TGG 0.521389 1_1:-4833527 Msa0002690:CDS
AGACAGTTGCCCTTGTACTG+TGG 0.524055 1_1:-4833655 Msa0002690:CDS
AATGGAGAGTGCCAAAATAG+TGG 0.525754 1_1:-4833729 Msa0002690:CDS
GTGATGAGGTTGAACAAATT+GGG 0.525757 1_1:-4837343 Msa0002690:CDS
GCACTTGATCGTGTGGAAGA+AGG 0.526412 1_1:-4834235 Msa0002690:CDS
ATGGAACAAGCTGAAGCCCT+AGG 0.527755 1_1:-4833121 Msa0002690:CDS
ATGCAATCTCGACAAGGATG+TGG 0.527790 1_1:-4834428 Msa0002690:CDS
TTTGCACCAGGGCAATCAGA+TGG 0.527982 1_1:-4835956 Msa0002690:CDS
CTTCCGAGGTTATCAGCTAT+CGG 0.530437 1_1:+4833566 None:intergenic
GAAGGTAAATTTGTAGAGCC+AGG 0.531858 1_1:-4833845 Msa0002690:CDS
GTGATAAAGCTCAAGATGCT+AGG 0.532035 1_1:-4837177 Msa0002690:CDS
TGGCAACAGCTATCAATTCA+AGG 0.532190 1_1:+4831933 None:intergenic
ATATGGAGAATCCCTTGCTC+AGG 0.535247 1_1:-4833612 Msa0002690:CDS
CTGTTGAGAAAGAAAGGGAC+AGG 0.535797 1_1:-4837402 Msa0002690:CDS
CTGAGCTAGTATAGAAGGGA+GGG 0.536608 1_1:+4834204 None:intergenic
TATTCCTACTACAGCAGCAA+TGG 0.537673 1_1:-4833747 Msa0002690:CDS
GAGTGAGAGCTTGGTATTCA+CGG 0.538327 1_1:+4835004 None:intergenic
CCGCCAGACAAAGGAAATGT+AGG 0.538739 1_1:-4835207 Msa0002690:CDS
TCACTCAAGGACACTGGCCG+CGG 0.538856 1_1:-4834490 Msa0002690:CDS
TTGAACCCCAAATGGTATGA+AGG 0.539742 1_1:-4832336 Msa0002690:CDS
CATATTGTTACTGGTGATGA+TGG 0.543100 1_1:-4836872 Msa0002690:CDS
GTTCTTCATTTCGGCACACA+CGG 0.543326 1_1:-4834748 Msa0002690:CDS
ATATTCCCGATCAGACTGTC+GGG 0.544764 1_1:+4834673 None:intergenic
TGTGAGTTCAATTATTAGCA+CGG 0.546575 1_1:-4834458 Msa0002690:CDS
CAAGTCGAACTGTCTCTGAA+AGG 0.548201 1_1:+4832376 None:intergenic
ATTGTAGCTGATAATGAAGT+GGG 0.548716 1_1:-4833887 Msa0002690:CDS
GATTCGGCATAAACGAGCCA+TGG 0.549574 1_1:-4834000 Msa0002690:CDS
GTTATCCCGACAGTCTGATC+GGG 0.550046 1_1:-4834678 Msa0002690:CDS
TGTTATCCCGACAGTCTGAT+CGG 0.550112 1_1:-4834679 Msa0002690:CDS
TTCAGTTTCCCGCCAGACAA+AGG 0.551110 1_1:-4835216 Msa0002690:CDS
AAAATTGGGGAAAGCCTCCT+GGG 0.551960 1_1:-4834960 Msa0002690:CDS
TCTGGATAGAGCAGTGAAGA+TGG 0.553343 1_1:-4833194 Msa0002690:CDS
CCTACATTTCCTTTGTCTGG+CGG 0.555098 1_1:+4835207 None:intergenic
CCATCCGCATTCAGATTCCC+AGG 0.556819 1_1:+4834943 None:intergenic
GAATTGGTATGGAACTAGAA+GGG 0.557064 1_1:-4836957 Msa0002690:CDS
GAAGGTGTATGCTAAGATCA+TGG 0.558148 1_1:-4834350 Msa0002690:CDS
TCTTATGTTCCAGCATTGAA+AGG 0.558366 1_1:-4837076 Msa0002690:CDS
TCCGACAAGTACTGAATCCA+TGG 0.559527 1_1:+4833983 None:intergenic
AGCATTGAAAGGTACAAAGA+TGG 0.560280 1_1:-4837065 Msa0002690:CDS
TCCCGACCAGCGAAAACTAT+CGG 0.560614 1_1:+4836494 None:intergenic
ACTGCTTCCATGGCTGTGGG+TGG 0.561275 1_1:+4834280 None:intergenic
CTACTCCTCAAACATAAACC+TGG 0.561850 1_1:-4833047 Msa0002690:CDS
AAGAGGCTTACTAACACAGT+TGG 0.562219 1_1:-4832273 Msa0002690:CDS
ACTCCTCCAGCCGAAAATGC+AGG 0.564072 1_1:-4834562 Msa0002690:CDS
GGATGTGGATTTGCCAGAGG+AGG 0.564165 1_1:-4834413 Msa0002690:CDS
CCTGGGAATCTGAATGCGGA+TGG 0.565028 1_1:-4834943 Msa0002690:CDS
CGATAGCTGATAACCTCGGA+AGG 0.565402 1_1:-4833565 Msa0002690:CDS
TTAACGACGACGTCAACCCT+AGG 0.565771 1_1:+4833500 None:intergenic
GCGAGATCTTGTTGTTGGGA+AGG 0.566549 1_1:-4834368 Msa0002690:CDS
AGGAATAGATTGTGGATCCA+GGG 0.566579 1_1:+4833763 None:intergenic
CACTCTGAGCTAGTATAGAA+GGG 0.566931 1_1:+4834200 None:intergenic
ATTAGTAGTGCGCTCTACAA+AGG 0.567137 1_1:+4834072 None:intergenic
TGGCTATGGTAGCCTCTGAA+GGG 0.567287 1_1:+4834620 None:intergenic
TACCACCACTGCCAATGCCC+AGG 0.567361 1_1:-4832747 Msa0002690:intron
ACATGCCTTCATACCATTTG+GGG 0.567611 1_1:+4832331 None:intergenic
ACTTGAGGCTAAAGGTGCTA+AGG 0.567955 1_1:-4836825 Msa0002690:CDS
GACAGTTGCCCTTGTACTGT+GGG 0.568375 1_1:-4833654 Msa0002690:CDS
TTCTTGGAAGCCAATGGACG+CGG 0.569693 1_1:-4832117 Msa0002690:CDS
CTTTCCAGGCATGAATTCAA+GGG 0.570369 1_1:+4834723 None:intergenic
GAGTCCCGCCTGTTGCCTTG+TGG 0.570560 1_1:-4834322 Msa0002690:CDS
GGATTTGCCAGAGGAGGGTG+TGG 0.570930 1_1:-4834407 Msa0002690:CDS
TGGTGAGCCACCCACAGCCA+TGG 0.572051 1_1:-4834287 Msa0002690:CDS
TCATGCCTGGAAAGCAGGTA+GGG 0.572227 1_1:-4834714 Msa0002690:CDS
GCAACTGCTTCCATGGCTGT+GGG 0.573262 1_1:+4834277 None:intergenic
GCCAGAGCTAGATGGAGGAA+TGG 0.573307 1_1:-4836519 Msa0002690:CDS
AGTTTAAAACAAGCCTTGGA+AGG 0.573560 1_1:-4833863 Msa0002690:CDS
GCCATGGATTCAGTACTTGT+CGG 0.574516 1_1:-4833984 Msa0002690:CDS
AGCTGCTGTTGAGAAAGAAA+GGG 0.574923 1_1:-4837407 Msa0002690:CDS
TGAAGAGCTTGGAAGACCTA+GGG 0.575077 1_1:-4833516 Msa0002690:CDS
AATTCTGTGATATCTCTCAC+TGG 0.577320 1_1:-4836716 Msa0002690:CDS
TTGCACCAGGGCAATCAGAT+GGG 0.578411 1_1:-4835955 Msa0002690:CDS
AATTGTAGCTGATAATGAAG+TGG 0.581181 1_1:-4833888 Msa0002690:CDS
TTGAAGAGCTTGGAAGACCT+AGG 0.581627 1_1:-4833517 Msa0002690:CDS
TCACCTTCGTAGCCAAATGT+AGG 0.581846 1_1:+4834865 None:intergenic
TCTATACTAGCTCAGAGTGT+AGG 0.582656 1_1:-4834196 Msa0002690:CDS
CTCAAACATAAACCTGGCTG+TGG 0.583568 1_1:-4833041 Msa0002690:CDS
GGGAGATTTCCGATGAGTCA+AGG 0.586930 1_1:+4832864 None:intergenic
ATTGGAGAAGATCCTTGTTG+CGG 0.587479 1_1:+4833081 None:intergenic
AAGCAAAAGACTTTCTGCTA+AGG 0.588891 1_1:+4832975 None:intergenic
TGGAACAAGCTGAAGCCCTA+GGG 0.589177 1_1:-4833120 Msa0002690:CDS
ACAAGATCTCGCTCTTTAGT+GGG 0.590525 1_1:+4834379 None:intergenic
TGAGAAAGAAAGGGACAGGA+TGG 0.590862 1_1:-4837398 Msa0002690:CDS
CAGCTGCTGAGACTGATGAT+TGG 0.591859 1_1:+4837599 None:intergenic
GAGGCAGTTGTACTCAGAAG+TGG 0.592377 1_1:-4832058 Msa0002690:CDS
CTATGTAAGGAAGCATGCAA+TGG 0.593996 1_1:-4833140 Msa0002690:CDS
GCTCGTTTATGCCGAATCCA+AGG 0.594381 1_1:+4834005 None:intergenic
GGAGTCCACAAGGCAACAGG+CGG 0.595305 1_1:+4834317 None:intergenic
AAATCTGCAAGCCCTCATCA+TGG 0.595409 1_1:-4834820 Msa0002690:CDS
CAACCTACATTTGGCTACGA+AGG 0.595624 1_1:-4834868 Msa0002690:CDS
CAAACATTCTTGGAAGCCAA+TGG 0.597139 1_1:-4832123 Msa0002690:CDS
CTGCTAGACAGGATCATCCA+AGG 0.598388 1_1:-4836673 Msa0002690:CDS
TGCTGTGATTATGGAACTTG+AGG 0.601587 1_1:-4836840 Msa0002690:CDS
TGTTTGCACCAGCTTCCTGA+AGG 0.602417 1_1:+4832140 None:intergenic
CAAGGCTTACAGGTTCTACA+CGG 0.603134 1_1:+4833537 None:intergenic
GTATCAGCAATATATGCACT+TGG 0.603205 1_1:+4832767 None:intergenic
TCACGCTCTTCACAAGAGAG+TGG 0.605513 1_1:-4835985 Msa0002690:CDS
AAGCAAATTTGAAAGAACAA+AGG 0.605667 1_1:-4838016 Msa0002690:five_prime_UTR
TGCTAGACAGGATCATCCAA+GGG 0.605763 1_1:-4836672 Msa0002690:CDS
ATGTTATCTAGTGGTTATGA+GGG 0.606082 1_1:-4832312 Msa0002690:CDS
CACAACATTCATTCAAGACG+AGG 0.607395 1_1:-4832199 Msa0002690:CDS
GGCTTACTAACACAGTTGGA+TGG 0.608400 1_1:-4832269 Msa0002690:CDS
ATTTATAGAAGCAGTGACAA+AGG 0.608838 1_1:-4834157 Msa0002690:CDS
CATCAATGCCTGAGGTGATG+AGG 0.609334 1_1:-4837357 Msa0002690:CDS
AACTCACAATTTGTTGACCG+CGG 0.612209 1_1:+4834473 None:intergenic
GATGTGGATTTGCCAGAGGA+GGG 0.612511 1_1:-4834412 Msa0002690:CDS
AATATTCCCGATCAGACTGT+CGG 0.612746 1_1:+4834672 None:intergenic
AACGTACGAAACATTCTGCA+AGG 0.613833 1_1:-4837497 Msa0002690:CDS
AGCTAGTATAGAAGGGAGGG+AGG 0.614373 1_1:+4834207 None:intergenic
TCATCCACAGAACCTGAGCA+AGG 0.614478 1_1:+4833600 None:intergenic
GAGTGTAGGAAGAAACATAG+AGG 0.615313 1_1:-4834182 Msa0002690:CDS
TTCATGCCTGGAAAGCAGGT+AGG 0.615731 1_1:-4834715 Msa0002690:CDS
GTTTGAGGAGTAGGATCCTG+AGG 0.617687 1_1:+4833057 None:intergenic
CTACACGGTTGACCCTTCCG+AGG 0.618332 1_1:+4833552 None:intergenic
GTTTATGCCGAATCCAAGGA+TGG 0.618597 1_1:+4834009 None:intergenic
GGTGTTTCCATCAATGCCTG+AGG 0.619009 1_1:-4837365 Msa0002690:CDS
ATCTGTTCCCCACAGTACAA+GGG 0.619067 1_1:+4833646 None:intergenic
GAGTCCACAAGGCAACAGGC+GGG 0.619334 1_1:+4834318 None:intergenic
AGTTGTCGGTTACTTAGTCG+AGG 0.622689 1_1:-4837536 Msa0002690:CDS
TGGTGAAAGTTTGGCCCACG+TGG 0.626188 1_1:+4838193 None:intergenic
TTGGAGAAAAGTAACCGCAT+AGG 0.627390 1_1:+4834841 None:intergenic
CCAATGACATGGAGTCCACA+AGG 0.627709 1_1:+4834307 None:intergenic
GAGCGCACTACTAATAGTAA+GGG 0.627775 1_1:-4834064 Msa0002690:CDS
ATGCTGCAAAACCATGATGA+GGG 0.628612 1_1:+4834809 None:intergenic
GAATTGATAGCTGTTGCCAA+TGG 0.630507 1_1:-4831929 Msa0002690:three_prime_UTR
TATGCTGCAAAACCATGATG+AGG 0.631679 1_1:+4834808 None:intergenic
ATAGCATGTTGAAGCTTGTG+AGG 0.631952 1_1:-4837231 Msa0002690:CDS
TCTGAGCTAGTATAGAAGGG+AGG 0.635865 1_1:+4834203 None:intergenic
AAGTTCGAGAAGCCGCAACA+AGG 0.636456 1_1:-4833093 Msa0002690:CDS
GCCTCCTGGGAATCTGAATG+CGG 0.636519 1_1:-4834947 Msa0002690:CDS
GTAATGACTGACATCAGTGA+GGG 0.638222 1_1:+4832844 None:intergenic
TGCTGCAAACAACCCTTCAG+AGG 0.638847 1_1:-4834632 Msa0002690:CDS
CATCCACAGAACCTGAGCAA+GGG 0.638930 1_1:+4833601 None:intergenic
AGTGGAGCAGCTTTGCACCA+GGG 0.638947 1_1:-4835967 Msa0002690:CDS
GTGTTCGGGAAATCGAGAAG+AGG 0.640018 1_1:-4832290 Msa0002690:CDS
TAAACAATGCAATCTCGACA+AGG 0.641680 1_1:-4834434 Msa0002690:CDS
CATAGCTGCACTTGATCGTG+TGG 0.643552 1_1:-4834242 Msa0002690:CDS
TTGACATCATCATACATACA+AGG 0.653715 1_1:+4836989 None:intergenic
TCAGTTGTCTGGAAAACCAG+TGG 0.654285 1_1:+4836602 None:intergenic
TATGAAGGCATGTTATCTAG+TGG 0.654989 1_1:-4832321 Msa0002690:CDS
TATCAGTCACTCAAGGACAC+TGG 0.659943 1_1:-4834496 Msa0002690:CDS
AGGCTACCATAGCCAAACGC+AGG 0.661038 1_1:-4834612 Msa0002690:CDS
TGGGTGGCTCACCAATGACA+TGG 0.661910 1_1:+4834296 None:intergenic
CAAGGATGTGGATTTGCCAG+AGG 0.666663 1_1:-4834416 Msa0002690:CDS
CTCGTCGTATCAGTCACTCA+AGG 0.667889 1_1:-4834503 Msa0002690:CDS
TTTGTAGAGCCAGGACCTGG+AGG 0.671079 1_1:-4833836 Msa0002690:CDS
AATCCGATAGCTGATAACCT+CGG 0.674393 1_1:-4833569 Msa0002690:CDS
CAAATAACCGAAGCATCACG+CGG 0.677542 1_1:-4834106 Msa0002690:CDS
GCTACGAAGGTGATCCTATG+CGG 0.681192 1_1:-4834855 Msa0002690:CDS
TGCGGATGGAGAGAATCTGT+TGG 0.692344 1_1:-4834929 Msa0002690:CDS
GATAGCTGATAACCTCGGAA+GGG 0.693097 1_1:-4833564 Msa0002690:CDS
GCATTGCCAGAGCTAGATGG+AGG 0.693777 1_1:-4836524 Msa0002690:CDS
GGAACAAGCTGAAGCCCTAG+GGG 0.694392 1_1:-4833119 Msa0002690:CDS
ATTATGGAACTTGAGGCTAA+AGG 0.694800 1_1:-4836833 Msa0002690:CDS
ACAGCATTAGAAGAAAATTG+GGG 0.696979 1_1:-4834973 Msa0002690:CDS
GAAAATGCAGGACTGTACAA+GGG 0.702354 1_1:-4834550 Msa0002690:CDS
AGTAATGACTGACATCAGTG+AGG 0.702723 1_1:+4832843 None:intergenic
TATGCCGAATCCAAGGATGG+AGG 0.719005 1_1:+4834012 None:intergenic
TCCGCATTCAGATTCCCAGG+AGG 0.735025 1_1:+4834946 None:intergenic
GCTGTAGTAGGAATAGATTG+TGG 0.740284 1_1:+4833755 None:intergenic
GAAAACGTTTAGGTACGCAG+CGG 0.758267 1_1:+4835182 None:intergenic
CAACAGCTATCAATTCAAGG+TGG 0.759637 1_1:+4831936 None:intergenic
ACAGTTGCCCTTGTACTGTG+GGG 0.790700 1_1:-4833653 Msa0002690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAGTCTAAAATTT+GGG - chr1_1:4832106-4832125 Msa0002690:CDS 15.0%
!! AAATTCACTAATGTTTATTA+AGG - chr1_1:4833996-4834015 Msa0002690:CDS 15.0%
!!! AATTTTTGTTTTTGTTATAG+AGG + chr1_1:4836654-4836673 None:intergenic 15.0%
!! GTTTACTTAGAAAAAAAATT+GGG - chr1_1:4837323-4837342 Msa0002690:CDS 15.0%
!! TATAAAATTGGAAGATATAT+TGG + chr1_1:4838221-4838240 None:intergenic 15.0%
!! CATGTCTTTATATATAAAAT+TGG + chr1_1:4838233-4838252 None:intergenic 15.0%
!!! CAATTTTATATATAAAGACA+TGG - chr1_1:4838231-4838250 Msa0002690:five_prime_UTR 15.0%
!!! CAATTATGAATAGTTTTTTG+AGG + chr1_1:4831777-4831796 None:intergenic 20.0%
!!! CTTTTTTTCAGTCTAAAATT+TGG - chr1_1:4832105-4832124 Msa0002690:CDS 20.0%
!!! TGTTTTTAGATAATGGAATT+TGG - chr1_1:4832986-4833005 Msa0002690:CDS 20.0%
!! AAAAGCAACTTATAACTTAT+AGG - chr1_1:4833793-4833812 Msa0002690:CDS 20.0%
!!! TCAGCTTTTAATAAAAGAAT+AGG + chr1_1:4834213-4834232 None:intergenic 20.0%
!!! TTTGTTGACATTTTATATTG+TGG - chr1_1:4834503-4834522 Msa0002690:CDS 20.0%
!!! TTGTTGACATTTTATATTGT+GGG - chr1_1:4834504-4834523 Msa0002690:CDS 20.0%
!!! ACAAGATGATTTTTAGATAT+TGG + chr1_1:4834599-4834618 None:intergenic 20.0%
!! ACAGATAATATTAAGACATA+TGG - chr1_1:4836381-4836400 Msa0002690:intron 20.0%
!! GATTCTGTTATTGTTTAAAA+AGG - chr1_1:4836595-4836614 Msa0002690:CDS 20.0%
!! TTCAAAATTTAAGGAAAGAT+GGG - chr1_1:4837214-4837233 Msa0002690:CDS 20.0%
!! CGTTTACTTAGAAAAAAAAT+TGG - chr1_1:4837322-4837341 Msa0002690:CDS 20.0%
!! AAGATGAAATCTCTATATAA+TGG + chr1_1:4838259-4838278 None:intergenic 20.0%
! ATAGTTTCTTCCAATGAAAA+CGG + chr1_1:4831856-4831875 None:intergenic 25.0%
! AAGCAAATTTGAAAGAACAA+AGG - chr1_1:4831994-4832013 Msa0002690:three_prime_UTR 25.0%
!! TTACAATAAAGAGCAAGTTT+TGG + chr1_1:4832065-4832084 None:intergenic 25.0%
! TTAGAATTTGGTAGAGTAAA+TGG + chr1_1:4832163-4832182 None:intergenic 25.0%
!!! AGTTGATCAACTTTAGAATT+TGG + chr1_1:4832175-4832194 None:intergenic 25.0%
!!! TTTTGAGTTACCATAGTAAT+TGG + chr1_1:4832251-4832270 None:intergenic 25.0%
! TTCTTGAAAAGCTGAAAAAA+AGG + chr1_1:4832730-4832749 None:intergenic 25.0%
! AAGAAATTCTGCAAATTATC+AGG + chr1_1:4832898-4832917 None:intergenic 25.0%
! AATTTCTTGAAGATGATTTC+TGG - chr1_1:4832910-4832929 Msa0002690:CDS 25.0%
! CCATTATCTAAAAACAAAAC+AGG + chr1_1:4832982-4833001 None:intergenic 25.0%
!!! CCTGTTTTGTTTTTAGATAA+TGG - chr1_1:4832979-4832998 Msa0002690:CDS 25.0%
!!! ATGTCAAAGAGTATTTGAAT+TGG - chr1_1:4833037-4833056 Msa0002690:CDS 25.0%
!!! AAAGAGTATTTGAATTGGTA+TGG - chr1_1:4833042-4833061 Msa0002690:CDS 25.0%
! ACAAATGGTTTCTTAGTAAT+AGG + chr1_1:4833273-4833292 None:intergenic 25.0%
! TTAATAGGGTATAAGGTAAA+AGG + chr1_1:4833609-4833628 None:intergenic 25.0%
!! TTTTACCTTATACCCTATTA+AGG - chr1_1:4833608-4833627 Msa0002690:CDS 25.0%
!! TTAAGTTGTTTATGTGAACA+AGG - chr1_1:4833912-4833931 Msa0002690:CDS 25.0%
! TAAGTTGTTTATGTGAACAA+GGG - chr1_1:4833913-4833932 Msa0002690:CDS 25.0%
!! TGAGTTGAAAAGAAAAACAA+AGG - chr1_1:4834079-4834098 Msa0002690:CDS 25.0%
! TGAAGTCATATTATCTCTTA+AGG - chr1_1:4834123-4834142 Msa0002690:CDS 25.0%
! ATATTATCTCTTAAGGTTGT+AGG - chr1_1:4834130-4834149 Msa0002690:CDS 25.0%
! TATTATCTCTTAAGGTTGTA+GGG - chr1_1:4834131-4834150 Msa0002690:CDS 25.0%
!!! ATATTTTGCTGTTCTTAATC+TGG + chr1_1:4834483-4834502 None:intergenic 25.0%
! CATCTTTCATGTAAATTCAT+AGG - chr1_1:4834564-4834583 Msa0002690:CDS 25.0%
! TGTTGAAATTATCTTGATAC+AGG - chr1_1:4834745-4834764 Msa0002690:CDS 25.0%
!!! TTCTTTTAGAACAGAGAAAA+TGG + chr1_1:4834858-4834877 None:intergenic 25.0%
!! CAATATGGTAATGTATTCAT+AGG - chr1_1:4835115-4835134 Msa0002690:CDS 25.0%
!!! AGAATTTTGTTTGAGTACTT+GGG - chr1_1:4836084-4836103 Msa0002690:intron 25.0%
! GAAAGGCAAAAAATTGATAA+TGG - chr1_1:4836318-4836337 Msa0002690:intron 25.0%
!! TTTGTTATAGAGGTTAAGTA+TGG + chr1_1:4836644-4836663 None:intergenic 25.0%
! AGAAACTATAATGATTGTTC+AGG - chr1_1:4836689-4836708 Msa0002690:CDS 25.0%
! GAAACTATAATGATTGTTCA+GGG - chr1_1:4836690-4836709 Msa0002690:CDS 25.0%
! ATGAAAATCTTGGAGTAATA+AGG + chr1_1:4836743-4836762 None:intergenic 25.0%
!! AAATTTTGAACAAGGTTAGT+GGG + chr1_1:4837204-4837223 None:intergenic 25.0%
!! TAAATTTTGAACAAGGTTAG+TGG + chr1_1:4837205-4837224 None:intergenic 25.0%
! CTAACCTTGTTCAAAATTTA+AGG - chr1_1:4837205-4837224 Msa0002690:CDS 25.0%
!! CTTTCCTTAAATTTTGAACA+AGG + chr1_1:4837212-4837231 None:intergenic 25.0%
! GTTCAAAATTTAAGGAAAGA+TGG - chr1_1:4837213-4837232 Msa0002690:CDS 25.0%
! GAAAGATCAAAATCCTAATA+AGG + chr1_1:4837505-4837524 None:intergenic 25.0%
! AAAATTACAACAGGGAAAAA+GGG + chr1_1:4838139-4838158 None:intergenic 25.0%
! AAAAATTACAACAGGGAAAA+AGG + chr1_1:4838140-4838159 None:intergenic 25.0%
! AGTCAACAAAAATTACAACA+GGG + chr1_1:4838147-4838166 None:intergenic 25.0%
! AAGTCAACAAAAATTACAAC+AGG + chr1_1:4838148-4838167 None:intergenic 25.0%
!!! TGTAATTTTTGTTGACTTTC+AGG - chr1_1:4838150-4838169 Msa0002690:five_prime_UTR 25.0%
!!! GTAATTTTTGTTGACTTTCA+GGG - chr1_1:4838151-4838170 Msa0002690:five_prime_UTR 25.0%
!! ATATATTGGCTAAGTTTGTT+TGG + chr1_1:4838207-4838226 None:intergenic 25.0%
! TGTGGAGTTGAGTTTTTATT+TGG + chr1_1:4831897-4831916 None:intergenic 30.0%
TTTCTTCTTGTTCTTCTATG+TGG + chr1_1:4831915-4831934 None:intergenic 30.0%
!! AAATTTGGGTTGATGATCAA+TGG - chr1_1:4832120-4832139 Msa0002690:CDS 30.0%
!!! AGTAATTGGTTTTCTTAGGA+AGG + chr1_1:4832237-4832256 None:intergenic 30.0%
!!! CCATAGTAATTGGTTTTCTT+AGG + chr1_1:4832241-4832260 None:intergenic 30.0%
CCTAAGAAAACCAATTACTA+TGG - chr1_1:4832238-4832257 Msa0002690:CDS 30.0%
TGCATTGCATTTCAATCTAA+AGG + chr1_1:4832278-4832297 None:intergenic 30.0%
AGATTGAAATGCAATGCAAT+TGG - chr1_1:4832280-4832299 Msa0002690:CDS 30.0%
AAATGCAATGCAATTGGTAA+TGG - chr1_1:4832286-4832305 Msa0002690:CDS 30.0%
! ACATACACAATTTTCACTGT+TGG + chr1_1:4832373-4832392 None:intergenic 30.0%
GAAGATGCTAATATCTTCAT+TGG - chr1_1:4832541-4832560 Msa0002690:intron 30.0%
!!! TGGTTCATTGATTTTTGTTG+AGG - chr1_1:4832561-4832580 Msa0002690:intron 30.0%
! TCTTTTAGTATGTCACAACT+TGG - chr1_1:4832691-4832710 Msa0002690:intron 30.0%
GGTAAATACTTCAAAACCTT+AGG + chr1_1:4832811-4832830 None:intergenic 30.0%
! ATATCTTGAGTCTACAGTTT+TGG - chr1_1:4832860-4832879 Msa0002690:CDS 30.0%
TTGACATCATCATACATACA+AGG + chr1_1:4833024-4833043 None:intergenic 30.0%
GATATCACAGAATTCACAAA+TGG + chr1_1:4833288-4833307 None:intergenic 30.0%
!! GTGATTGTTTTACCTGTTTT+GGG + chr1_1:4833543-4833562 None:intergenic 30.0%
!! AGTGATTGTTTTACCTGTTT+TGG + chr1_1:4833544-4833563 None:intergenic 30.0%
ACAATCCTTAATAGGGTATA+AGG + chr1_1:4833616-4833635 None:intergenic 30.0%
!!! GTTGCTTTTGTAAGTTATTC+AGG + chr1_1:4833782-4833801 None:intergenic 30.0%
TTGAAGCAGATATCTGATAT+TGG - chr1_1:4834171-4834190 Msa0002690:CDS 30.0%
TGATACTACAAGTAATCTCT+AGG - chr1_1:4834275-4834294 Msa0002690:CDS 30.0%
TTCCAATGTAGTAAAACCTT+AGG - chr1_1:4834661-4834680 Msa0002690:CDS 30.0%
TCCAATGTAGTAAAACCTTA+GGG - chr1_1:4834662-4834681 Msa0002690:CDS 30.0%
ACAACATAAGTGAAACTTCT+CGG + chr1_1:4834728-4834747 None:intergenic 30.0%
!!! TTTTAGAACAGAGAAAATGG+AGG + chr1_1:4834855-4834874 None:intergenic 30.0%
CTAAAAGAACTTCAAAGTGA+TGG - chr1_1:4834869-4834888 Msa0002690:CDS 30.0%
TGTAAGCAATGTTGAGATTT+GGG + chr1_1:4834976-4834995 None:intergenic 30.0%
TTGTAAGCAATGTTGAGATT+TGG + chr1_1:4834977-4834996 None:intergenic 30.0%
CACAGCATTAGAAGAAAATT+GGG - chr1_1:4835036-4835055 Msa0002690:CDS 30.0%
ACAGCATTAGAAGAAAATTG+GGG - chr1_1:4835037-4835056 Msa0002690:CDS 30.0%
TTGGTATATGGTAAGCAATA+TGG - chr1_1:4835100-4835119 Msa0002690:CDS 30.0%
TGTGAGTTCAATTATTAGCA+CGG - chr1_1:4835552-4835571 Msa0002690:intron 30.0%
ATTTATAGAAGCAGTGACAA+AGG - chr1_1:4835853-4835872 Msa0002690:intron 30.0%
!! CAGAATTTTGTTTGAGTACT+TGG - chr1_1:4836083-4836102 Msa0002690:intron 30.0%
! AATTGTAGCTGATAATGAAG+TGG - chr1_1:4836122-4836141 Msa0002690:intron 30.0%
! ATTGTAGCTGATAATGAAGT+GGG - chr1_1:4836123-4836142 Msa0002690:intron 30.0%
!! AAAACTTTAGGGTTTCTGAT+CGG + chr1_1:4836204-4836223 None:intergenic 30.0%
! TTCCTGTTGGTAAAACTTTA+GGG + chr1_1:4836215-4836234 None:intergenic 30.0%
! TTTCCTGTTGGTAAAACTTT+AGG + chr1_1:4836216-4836235 None:intergenic 30.0%
!! AGGCAAAAAATTGATAATGG+AGG - chr1_1:4836321-4836340 Msa0002690:intron 30.0%
CAATAACAGAATCCAAACAA+CGG + chr1_1:4836588-4836607 None:intergenic 30.0%
ACAGACAGATATGAAAATCT+TGG + chr1_1:4836753-4836772 None:intergenic 30.0%
! AAAAAGACAAGTCTTTGAGA+TGG - chr1_1:4837092-4837111 Msa0002690:CDS 30.0%
! AATTTTGAACAAGGTTAGTG+GGG + chr1_1:4837203-4837222 None:intergenic 30.0%
! TCACATAACAACTTTTACCT+GGG + chr1_1:4837283-4837302 None:intergenic 30.0%
! TTCACATAACAACTTTTACC+TGG + chr1_1:4837284-4837303 None:intergenic 30.0%
ATTGATTAAAGTGACACTGA+TGG - chr1_1:4837361-4837380 Msa0002690:CDS 30.0%
TTGACATTGCAAAACCTAAA+GGG + chr1_1:4837425-4837444 None:intergenic 30.0%
TTTGACATTGCAAAACCTAA+AGG + chr1_1:4837426-4837445 None:intergenic 30.0%
!!! AGTTTTTTCGTTTGACCTTA+TGG - chr1_1:4837585-4837604 Msa0002690:CDS 30.0%
AAAGGAACAATATCTCCATA+AGG + chr1_1:4837603-4837622 None:intergenic 30.0%
ATGTTATCTAGTGGTTATGA+GGG - chr1_1:4837698-4837717 Msa0002690:CDS 30.0%
AAGAAAACATTGAGAAGTTG+AGG - chr1_1:4837933-4837952 Msa0002690:five_prime_UTR 30.0%
GAAGTGGAAGATAAAATTGA+AGG - chr1_1:4837968-4837987 Msa0002690:five_prime_UTR 30.0%
!! TACCTTATTTCTCTGAAACT+TGG - chr1_1:4838048-4838067 Msa0002690:five_prime_UTR 30.0%
AACCAAGTTTCAGAGAAATA+AGG + chr1_1:4838053-4838072 None:intergenic 30.0%
TACATTAACAATGATGCCAT+TGG + chr1_1:4838100-4838119 None:intergenic 30.0%
AAATTACAACAGGGAAAAAG+GGG + chr1_1:4838138-4838157 None:intergenic 30.0%
TATGGTTAGTGGTGAAAGTT+TGG + chr1_1:4831829-4831848 None:intergenic 35.0%
AAAACGGTTTCTATGGTTAG+TGG + chr1_1:4831840-4831859 None:intergenic 35.0%
! ACCATAGAAACCGTTTTCAT+TGG - chr1_1:4831843-4831862 Msa0002690:three_prime_UTR 35.0%
TCCAATGAAAACGGTTTCTA+TGG + chr1_1:4831847-4831866 None:intergenic 35.0%
TGAGAAACACAACTCAACTT+TGG - chr1_1:4831969-4831988 Msa0002690:three_prime_UTR 35.0%
!! TTTTGGTTATGAGGGAAAGA+TGG + chr1_1:4832048-4832067 None:intergenic 35.0%
!!! AGAGCAAGTTTTGGTTATGA+GGG + chr1_1:4832056-4832075 None:intergenic 35.0%
!!! AAGAGCAAGTTTTGGTTATG+AGG + chr1_1:4832057-4832076 None:intergenic 35.0%
!! GGTAAGTTTTGCTTGTTTTC+TGG + chr1_1:4832352-4832371 None:intergenic 35.0%
!!! GATGCTTCTTTTGAAGTTGT+CGG - chr1_1:4832460-4832479 Msa0002690:intron 35.0%
GTGATGAGGTTGAACAAATT+GGG - chr1_1:4832667-4832686 Msa0002690:intron 35.0%
AAGAAGAATACTTCTTCAGC+TGG - chr1_1:4832748-4832767 Msa0002690:CDS 35.0%
! TCTTATGTTCCAGCATTGAA+AGG - chr1_1:4832934-4832953 Msa0002690:CDS 35.0%
ATCTTTGTACCTTTCAATGC+TGG + chr1_1:4832946-4832965 None:intergenic 35.0%
! AGCATTGAAAGGTACAAAGA+TGG - chr1_1:4832945-4832964 Msa0002690:CDS 35.0%
! CATACATACAAGGTGCTAAA+GGG + chr1_1:4833014-4833033 None:intergenic 35.0%
! TCATACATACAAGGTGCTAA+AGG + chr1_1:4833015-4833034 None:intergenic 35.0%
TGAATTGGTATGGAACTAGA+AGG - chr1_1:4833052-4833071 Msa0002690:CDS 35.0%
GAATTGGTATGGAACTAGAA+GGG - chr1_1:4833053-4833072 Msa0002690:CDS 35.0%
!!! TTGTTGGTTTGGTTTTGCAA+AGG - chr1_1:4833112-4833131 Msa0002690:CDS 35.0%
CAAAGGAGTCATATTGTTAC+TGG - chr1_1:4833129-4833148 Msa0002690:CDS 35.0%
! CATATTGTTACTGGTGATGA+TGG - chr1_1:4833138-4833157 Msa0002690:CDS 35.0%
TCATTACGTTGCTGTGATTA+TGG - chr1_1:4833161-4833180 Msa0002690:CDS 35.0%
ATTATGGAACTTGAGGCTAA+AGG - chr1_1:4833177-4833196 Msa0002690:CDS 35.0%
! AAGGTTATTCCAATTTTCGC+CGG - chr1_1:4833204-4833223 Msa0002690:CDS 35.0%
TCAATGAAGAACTTCTCAAC+CGG + chr1_1:4833249-4833268 None:intergenic 35.0%
AATTCTGTGATATCTCTCAC+TGG - chr1_1:4833294-4833313 Msa0002690:intron 35.0%
AGTGGCAAAGCAACAATATA+AGG + chr1_1:4833393-4833412 None:intergenic 35.0%
!! TTATATTGTTGCTTTGCCAC+TGG - chr1_1:4833392-4833411 Msa0002690:intron 35.0%
AGAGTGGTTGAATAGTACTT+TGG - chr1_1:4833431-4833450 Msa0002690:intron 35.0%
GAGTGGTTGAATAGTACTTT+GGG - chr1_1:4833432-4833451 Msa0002690:intron 35.0%
ACTTGAAGAGCAACTTGAAT+TGG + chr1_1:4833465-4833484 None:intergenic 35.0%
TGCAAGGACAATCCTTAATA+GGG + chr1_1:4833623-4833642 None:intergenic 35.0%
TTGCAAGGACAATCCTTAAT+AGG + chr1_1:4833624-4833643 None:intergenic 35.0%
TTGTCCTTGCAAATACTCTT+AGG - chr1_1:4833632-4833651 Msa0002690:CDS 35.0%
TGTCCTTGCAAATACTCTTA+GGG - chr1_1:4833633-4833652 Msa0002690:CDS 35.0%
!!! TAACACTTCTGAGACTGTTT+TGG - chr1_1:4833692-4833711 Msa0002690:CDS 35.0%
TGACTTCAAGAAGCGAAATA+TGG + chr1_1:4834111-4834130 None:intergenic 35.0%
!! GATATTGACTTTGAGCTGAA+TGG - chr1_1:4834382-4834401 Msa0002690:CDS 35.0%
TAATCTGGACAAAAGAAACG+AGG + chr1_1:4834468-4834487 None:intergenic 35.0%
ATTGGAAAAACATGTAGTGC+AGG + chr1_1:4834648-4834667 None:intergenic 35.0%
! ACCCTAAGGTTTTACTACAT+TGG + chr1_1:4834666-4834685 None:intergenic 35.0%
AAATGGAGGAGAAAACGTTT+AGG + chr1_1:4834841-4834860 None:intergenic 35.0%
AGTGATGGTTACAATGTTGA+AGG - chr1_1:4834884-4834903 Msa0002690:CDS 35.0%
!! AATCAATGCTTCTGAAGTCT+CGG + chr1_1:4834915-4834934 None:intergenic 35.0%
! CCAATTTTCTTCTAATGCTG+TGG + chr1_1:4835038-4835057 None:intergenic 35.0%
CCACAGCATTAGAAGAAAAT+TGG - chr1_1:4835035-4835054 Msa0002690:CDS 35.0%
ATAGGTGTTCAACCTACATT+TGG - chr1_1:4835133-4835152 Msa0002690:CDS 35.0%
GCAGCATAGTAATAGACATT+TGG + chr1_1:4835364-4835383 None:intergenic 35.0%
TAAACAATGCAATCTCGACA+AGG - chr1_1:4835576-4835595 Msa0002690:intron 35.0%
!! CAGTGACAAAGGAGTATTAA+AGG - chr1_1:4835864-4835883 Msa0002690:intron 35.0%
TAAAGGATGTAGAGCTTCTT+CGG - chr1_1:4835881-4835900 Msa0002690:intron 35.0%
AATAAACTTACCTCCATCCT+TGG - chr1_1:4835988-4836007 Msa0002690:CDS 35.0%
! CAAATTTTACCGAGGTGATA+GGG - chr1_1:4836053-4836072 Msa0002690:intron 35.0%
! AGTTTAAAACAAGCCTTGGA+AGG - chr1_1:4836147-4836166 Msa0002690:intron 35.0%
CTCTACAAATTTACCTTCCA+AGG + chr1_1:4836163-4836182 None:intergenic 35.0%
!! AAACTTTAGGGTTTCTGATC+GGG + chr1_1:4836203-4836222 None:intergenic 35.0%
! AACCCTAAAGTTTTACCAAC+AGG - chr1_1:4836210-4836229 Msa0002690:intron 35.0%
GCATGAATATTCTTTCCTGT+TGG + chr1_1:4836228-4836247 None:intergenic 35.0%
! CAATCTCTCTACCACTATTT+TGG + chr1_1:4836295-4836314 None:intergenic 35.0%
CTGATACCTGATTGATGAAA+AGG + chr1_1:4836557-4836576 None:intergenic 35.0%
TCTTCTTCAGATGAATCTTC+TGG - chr1_1:4836798-4836817 Msa0002690:CDS 35.0%
AAGCAAAAGACTTTCTGCTA+AGG + chr1_1:4837038-4837057 None:intergenic 35.0%
TTTCCAAAACCTTGACTCAT+CGG - chr1_1:4837137-4837156 Msa0002690:CDS 35.0%
GTATCAGCAATATATGCACT+TGG + chr1_1:4837246-4837265 None:intergenic 35.0%
GATTTGAATTTCACCCCTTT+AGG - chr1_1:4837408-4837427 Msa0002690:CDS 35.0%
TGACATTGCAAAACCTAAAG+GGG + chr1_1:4837424-4837443 None:intergenic 35.0%
ACACAAGTGACATCCTTATT+AGG - chr1_1:4837489-4837508 Msa0002690:CDS 35.0%
ATGGAGATATTGTTCCTTTC+AGG - chr1_1:4837604-4837623 Msa0002690:CDS 35.0%
AACATGCCTTCATACCATTT+GGG + chr1_1:4837683-4837702 None:intergenic 35.0%
TAACATGCCTTCATACCATT+TGG + chr1_1:4837684-4837703 None:intergenic 35.0%
! TATGAAGGCATGTTATCTAG+TGG - chr1_1:4837689-4837708 Msa0002690:CDS 35.0%
CATGTTATCTAGTGGTTATG+AGG - chr1_1:4837697-4837716 Msa0002690:CDS 35.0%
! TTCTGGACAAGTTGACAATT+GGG - chr1_1:4837772-4837791 Msa0002690:CDS 35.0%
GTCTTGAATGAATGTTGTGT+TGG + chr1_1:4837810-4837829 None:intergenic 35.0%
ACGTGGCAAAATGTAGTCAT+TGG + chr1_1:4831803-4831822 None:intergenic 40.0%
! AATGACTACATTTTGCCACG+TGG - chr1_1:4831802-4831821 Msa0002690:three_prime_UTR 40.0%
! ATGACTACATTTTGCCACGT+GGG - chr1_1:4831803-4831822 Msa0002690:three_prime_UTR 40.0%
TGAGGGAAAGATGGTATTTG+AGG + chr1_1:4832039-4832058 None:intergenic 40.0%
AACGTACGAAACATTCTGCA+AGG - chr1_1:4832513-4832532 Msa0002690:intron 40.0%
AAGCTGCTGTTGAGAAAGAA+AGG - chr1_1:4832602-4832621 Msa0002690:intron 40.0%
AGCTGCTGTTGAGAAAGAAA+GGG - chr1_1:4832603-4832622 Msa0002690:intron 40.0%
GGTGATGAGGTTGAACAAAT+TGG - chr1_1:4832666-4832685 Msa0002690:intron 40.0%
ATAGCATGTTGAAGCTTGTG+AGG - chr1_1:4832779-4832798 Msa0002690:CDS 40.0%
! GCATCTTGAGCTTTATCACT+TGG + chr1_1:4832832-4832851 None:intergenic 40.0%
GTGATAAAGCTCAAGATGCT+AGG - chr1_1:4832833-4832852 Msa0002690:CDS 40.0%
!!! TTGAGTCTACAGTTTTGGCT+TGG - chr1_1:4832865-4832884 Msa0002690:CDS 40.0%
AGTTCAAATGCACCTGTTGT+TGG - chr1_1:4833096-4833115 Msa0002690:CDS 40.0%
! AAATGCACCTGTTGTTGGTT+TGG - chr1_1:4833101-4833120 Msa0002690:CDS 40.0%
TGCAAAACCAAACCAACAAC+AGG + chr1_1:4833111-4833130 None:intergenic 40.0%
TGCTGTGATTATGGAACTTG+AGG - chr1_1:4833170-4833189 Msa0002690:CDS 40.0%
! TTATTCCAATTTTCGCCGGA+GGG - chr1_1:4833208-4833227 Msa0002690:intron 40.0%
ATCAAAGCTTCAATAGCCCT+TGG + chr1_1:4833357-4833376 None:intergenic 40.0%
! TTTTCCAGACAACTGAAGAG+TGG - chr1_1:4833415-4833434 Msa0002690:intron 40.0%
!! AGACCCTAAGAGTATTTGCA+AGG + chr1_1:4833639-4833658 None:intergenic 40.0%
GAACGAAGAGGAGAGAAAAA+AGG + chr1_1:4833954-4833973 None:intergenic 40.0%
!! AGGTGTTGAACTCTGTTGTT+TGG - chr1_1:4834295-4834314 Msa0002690:CDS 40.0%
GTTCCTACATTTCCTTTGTC+TGG + chr1_1:4834809-4834828 None:intergenic 40.0%
!! ATCAATGCTTCTGAAGTCTC+GGG + chr1_1:4834914-4834933 None:intergenic 40.0%
TCTTCTAATGCTGTGGCATA+GGG + chr1_1:4835031-4835050 None:intergenic 40.0%
TTCTTCTAATGCTGTGGCAT+AGG + chr1_1:4835032-4835051 None:intergenic 40.0%
GGAGAGAATCTGTTGGTATA+TGG - chr1_1:4835088-4835107 Msa0002690:CDS 40.0%
TTGGAGAAAAGTAACCGCAT+AGG + chr1_1:4835172-4835191 None:intergenic 40.0%
ATGCTGCAAAACCATGATGA+GGG + chr1_1:4835204-4835223 None:intergenic 40.0%
TATGCTGCAAAACCATGATG+AGG + chr1_1:4835205-4835224 None:intergenic 40.0%
GCTGATGCTGTTCTTCATTT+CGG - chr1_1:4835253-4835272 Msa0002690:intron 40.0%
CTTTCCAGGCATGAATTCAA+GGG + chr1_1:4835290-4835309 None:intergenic 40.0%
AATATTCCCGATCAGACTGT+CGG + chr1_1:4835341-4835360 None:intergenic 40.0%
TGGAGGAGTAAGATAGCTTA+TGG + chr1_1:4835437-4835456 None:intergenic 40.0%
! CTTGTACAGTCCTGCATTTT+CGG + chr1_1:4835461-4835480 None:intergenic 40.0%
GAAAATGCAGGACTGTACAA+GGG - chr1_1:4835460-4835479 Msa0002690:intron 40.0%
!! AACTCACAATTTGTTGACCG+CGG + chr1_1:4835540-4835559 None:intergenic 40.0%
ACAAGATCTCGCTCTTTAGT+GGG + chr1_1:4835634-4835653 None:intergenic 40.0%
AACAAGATCTCGCTCTTTAG+TGG + chr1_1:4835635-4835654 None:intergenic 40.0%
! AAAGAGCGAGATCTTGTTGT+TGG - chr1_1:4835637-4835656 Msa0002690:intron 40.0%
!! AAGAGCGAGATCTTGTTGTT+GGG - chr1_1:4835638-4835657 Msa0002690:intron 40.0%
! GAAGGTGTATGCTAAGATCA+TGG - chr1_1:4835660-4835679 Msa0002690:intron 40.0%
CACTCTGAGCTAGTATAGAA+GGG + chr1_1:4835813-4835832 None:intergenic 40.0%
ACACTCTGAGCTAGTATAGA+AGG + chr1_1:4835814-4835833 None:intergenic 40.0%
TCTATACTAGCTCAGAGTGT+AGG - chr1_1:4835814-4835833 Msa0002690:intron 40.0%
GAGTGTAGGAAGAAACATAG+AGG - chr1_1:4835828-4835847 Msa0002690:intron 40.0%
ATTAGTAGTGCGCTCTACAA+AGG + chr1_1:4835941-4835960 None:intergenic 40.0%
AGAGCGCACTACTAATAGTA+AGG - chr1_1:4835945-4835964 Msa0002690:CDS 40.0%
GAGCGCACTACTAATAGTAA+GGG - chr1_1:4835946-4835965 Msa0002690:CDS 40.0%
! TCGGATACCAAATTTTACCG+AGG - chr1_1:4836045-4836064 Msa0002690:intron 40.0%
CCTATCACCTCGGTAAAATT+TGG + chr1_1:4836055-4836074 None:intergenic 40.0%
! CCAAATTTTACCGAGGTGAT+AGG - chr1_1:4836052-4836071 Msa0002690:intron 40.0%
AGTACTTGGGAGAATGTTTG+AGG - chr1_1:4836097-4836116 Msa0002690:intron 40.0%
! GGGAAGTTTAAAACAAGCCT+TGG - chr1_1:4836143-4836162 Msa0002690:intron 40.0%
GAAGGTAAATTTGTAGAGCC+AGG - chr1_1:4836165-4836184 Msa0002690:intron 40.0%
AGGAAAGAATATTCATGCCC+TGG - chr1_1:4836230-4836249 Msa0002690:intron 40.0%
AGGAATAGATTGTGGATCCA+GGG + chr1_1:4836250-4836269 None:intergenic 40.0%
TAGGAATAGATTGTGGATCC+AGG + chr1_1:4836251-4836270 None:intergenic 40.0%
GCTGTAGTAGGAATAGATTG+TGG + chr1_1:4836258-4836277 None:intergenic 40.0%
TATTCCTACTACAGCAGCAA+TGG - chr1_1:4836263-4836282 Msa0002690:intron 40.0%
!! AATGGAGAGTGCCAAAATAG+TGG - chr1_1:4836281-4836300 Msa0002690:intron 40.0%
TGGTAGAGAGATTGCTTGAA+AGG - chr1_1:4836301-4836320 Msa0002690:intron 40.0%
AATCCGATAGCTGATAACCT+CGG - chr1_1:4836441-4836460 Msa0002690:intron 40.0%
! CAGAGACCTTTTCATCAATC+AGG - chr1_1:4836548-4836567 Msa0002690:CDS 40.0%
TCAGTTATCACACCGTTGTT+TGG - chr1_1:4836573-4836592 Msa0002690:CDS 40.0%
CTTACATAGTTCATCTCTGC+TGG + chr1_1:4836859-4836878 None:intergenic 40.0%
CAGCAGAGATGAACTATGTA+AGG - chr1_1:4836857-4836876 Msa0002690:CDS 40.0%
! CTATGTAAGGAAGCATGCAA+TGG - chr1_1:4836870-4836889 Msa0002690:CDS 40.0%
ATTGGAGAAGATCCTTGTTG+CGG + chr1_1:4836932-4836951 None:intergenic 40.0%
CAGGTTTATGTTTGAGGAGT+AGG + chr1_1:4836965-4836984 None:intergenic 40.0%
CTACTCCTCAAACATAAACC+TGG - chr1_1:4836963-4836982 Msa0002690:CDS 40.0%
TTCTGCTAAGGTACATGTCT+TGG + chr1_1:4837026-4837045 None:intergenic 40.0%
!!! TGAGTCAAGGTTTTGGAAAG+TGG + chr1_1:4837136-4837155 None:intergenic 40.0%
! TTTCCGATGAGTCAAGGTTT+TGG + chr1_1:4837143-4837162 None:intergenic 40.0%
GTAATGACTGACATCAGTGA+GGG + chr1_1:4837169-4837188 None:intergenic 40.0%
AGTAATGACTGACATCAGTG+AGG + chr1_1:4837170-4837189 None:intergenic 40.0%
! AACAACTTTTACCTGGGCAT+TGG + chr1_1:4837277-4837296 None:intergenic 40.0%
! TCATTTTATAACCATCCCCG+AGG - chr1_1:4837384-4837403 Msa0002690:CDS 40.0%
GTGAAATTCAAATCTCCTCG+GGG + chr1_1:4837402-4837421 None:intergenic 40.0%
GGTGAAATTCAAATCTCCTC+GGG + chr1_1:4837403-4837422 None:intergenic 40.0%
GGGTGAAATTCAAATCTCCT+CGG + chr1_1:4837404-4837423 None:intergenic 40.0%
! AAGTCGAACTGTCTCTGAAA+GGG + chr1_1:4837636-4837655 None:intergenic 40.0%
TTGAACCCCAAATGGTATGA+AGG - chr1_1:4837674-4837693 Msa0002690:CDS 40.0%
ACATGCCTTCATACCATTTG+GGG + chr1_1:4837682-4837701 None:intergenic 40.0%
AAGAGGCTTACTAACACAGT+TGG - chr1_1:4837737-4837756 Msa0002690:CDS 40.0%
! CTTCTGGACAAGTTGACAAT+TGG - chr1_1:4837771-4837790 Msa0002690:CDS 40.0%
CACAACATTCATTCAAGACG+AGG - chr1_1:4837811-4837830 Msa0002690:CDS 40.0%
CAAACATTCTTGGAAGCCAA+TGG - chr1_1:4837887-4837906 Msa0002690:exon 40.0%
CAACAGCTATCAATTCAAGG+TGG + chr1_1:4838077-4838096 None:intergenic 40.0%
TGGCAACAGCTATCAATTCA+AGG + chr1_1:4838080-4838099 None:intergenic 40.0%
! GAATTGATAGCTGTTGCCAA+TGG - chr1_1:4838081-4838100 Msa0002690:five_prime_UTR 40.0%
GCATTTGCAACTGCACAAAA+AGG + chr1_1:4838185-4838204 None:intergenic 40.0%
! AGTTGTCGGTTACTTAGTCG+AGG - chr1_1:4832474-4832493 Msa0002690:intron 45.0%
CTGTTGAGAAAGAAAGGGAC+AGG - chr1_1:4832608-4832627 Msa0002690:intron 45.0%
TGAGAAAGAAAGGGACAGGA+TGG - chr1_1:4832612-4832631 Msa0002690:intron 45.0%
TTGTTCAACCTCATCACCTC+AGG + chr1_1:4832664-4832683 None:intergenic 45.0%
!!! AGTCTACAGTTTTGGCTTGG+TGG - chr1_1:4832868-4832887 Msa0002690:CDS 45.0%
!!! GTCTACAGTTTTGGCTTGGT+GGG - chr1_1:4832869-4832888 Msa0002690:CDS 45.0%
!! ACTTGAGGCTAAAGGTGCTA+AGG - chr1_1:4833185-4833204 Msa0002690:CDS 45.0%
! GTTATTCCAATTTTCGCCGG+AGG - chr1_1:4833207-4833226 Msa0002690:intron 45.0%
! CTCACTGGATTTGCTCTTGT+TGG - chr1_1:4833309-4833328 Msa0002690:intron 45.0%
! ACTGGATTTGCTCTTGTTGG+AGG - chr1_1:4833312-4833331 Msa0002690:intron 45.0%
! CTGGATTTGCTCTTGTTGGA+GGG - chr1_1:4833313-4833332 Msa0002690:intron 45.0%
TGCTAGACAGGATCATCCAA+GGG - chr1_1:4833338-4833357 Msa0002690:intron 45.0%
TCAGTTGTCTGGAAAACCAG+TGG + chr1_1:4833411-4833430 None:intergenic 45.0%
TCAACCACTCTTCAGTTGTC+TGG + chr1_1:4833422-4833441 None:intergenic 45.0%
GCAAGCAAGAATGAACGAAG+AGG + chr1_1:4833966-4833985 None:intergenic 45.0%
TTCACATGAAGACGACCCTA+AGG + chr1_1:4834680-4834699 None:intergenic 45.0%
CTACATTTCCTTTGTCTGGC+GGG + chr1_1:4834805-4834824 None:intergenic 45.0%
CCTACATTTCCTTTGTCTGG+CGG + chr1_1:4834806-4834825 None:intergenic 45.0%
GAAAACGTTTAGGTACGCAG+CGG + chr1_1:4834831-4834850 None:intergenic 45.0%
GAGTGAGAGCTTGGTATTCA+CGG + chr1_1:4835009-4835028 None:intergenic 45.0%
AAAATTGGGGAAAGCCTCCT+GGG - chr1_1:4835050-4835069 Msa0002690:CDS 45.0%
CAACCTACATTTGGCTACGA+AGG - chr1_1:4835142-4835161 Msa0002690:CDS 45.0%
TCACCTTCGTAGCCAAATGT+AGG + chr1_1:4835148-4835167 None:intergenic 45.0%
ATGATGAGGGCTTGCAGATT+TGG + chr1_1:4835191-4835210 None:intergenic 45.0%
AAATCTGCAAGCCCTCATCA+TGG - chr1_1:4835190-4835209 Msa0002690:CDS 45.0%
GTTCTTCATTTCGGCACACA+CGG - chr1_1:4835262-4835281 Msa0002690:intron 45.0%
GCTTTCCAGGCATGAATTCA+AGG + chr1_1:4835291-4835310 None:intergenic 45.0%
TGAATTCATGCCTGGAAAGC+AGG - chr1_1:4835291-4835310 Msa0002690:intron 45.0%
TGTTATCCCGACAGTCTGAT+CGG - chr1_1:4835331-4835350 Msa0002690:intron 45.0%
ATATTCCCGATCAGACTGTC+GGG + chr1_1:4835340-4835359 None:intergenic 45.0%
CGAAAATGCAGGACTGTACA+AGG - chr1_1:4835459-4835478 Msa0002690:intron 45.0%
TATCAGTCACTCAAGGACAC+TGG - chr1_1:4835514-4835533 Msa0002690:intron 45.0%
ATGCAATCTCGACAAGGATG+TGG - chr1_1:4835582-4835601 Msa0002690:intron 45.0%
CTGAGCTAGTATAGAAGGGA+GGG + chr1_1:4835809-4835828 None:intergenic 45.0%
TCTGAGCTAGTATAGAAGGG+AGG + chr1_1:4835810-4835829 None:intergenic 45.0%
! CAAATAACCGAAGCATCACG+CGG - chr1_1:4835904-4835923 Msa0002690:intron 45.0%
CTTACCTCCATCCTTGGATT+CGG - chr1_1:4835994-4836013 Msa0002690:CDS 45.0%
GTTTATGCCGAATCCAAGGA+TGG + chr1_1:4836004-4836023 None:intergenic 45.0%
GCCATGGATTCAGTACTTGT+CGG - chr1_1:4836026-4836045 Msa0002690:intron 45.0%
!! TCCGACAAGTACTGAATCCA+TGG + chr1_1:4836030-4836049 None:intergenic 45.0%
! TGAGCTTTTCCCTATCACCT+CGG + chr1_1:4836065-4836084 None:intergenic 45.0%
AAATTTGTAGAGCCAGGACC+TGG - chr1_1:4836171-4836190 Msa0002690:intron 45.0%
ATCTGTTCCCCACAGTACAA+GGG + chr1_1:4836367-4836386 None:intergenic 45.0%
TATCTGTTCCCCACAGTACA+AGG + chr1_1:4836368-4836387 None:intergenic 45.0%
ATATGGAGAATCCCTTGCTC+AGG - chr1_1:4836398-4836417 Msa0002690:intron 45.0%
CTTCCGAGGTTATCAGCTAT+CGG + chr1_1:4836447-4836466 None:intergenic 45.0%
GATAGCTGATAACCTCGGAA+GGG - chr1_1:4836446-4836465 Msa0002690:intron 45.0%
CAAGGCTTACAGGTTCTACA+CGG + chr1_1:4836476-4836495 None:intergenic 45.0%
TAGGTCTTCCAAGCTCTTCA+AGG + chr1_1:4836494-4836513 None:intergenic 45.0%
TTGAAGAGCTTGGAAGACCT+AGG - chr1_1:4836493-4836512 Msa0002690:CDS 45.0%
TGAAGAGCTTGGAAGACCTA+GGG - chr1_1:4836494-4836513 Msa0002690:CDS 45.0%
TCTGGATAGAGCAGTGAAGA+TGG - chr1_1:4836816-4836835 Msa0002690:CDS 45.0%
!! CTCTGCTGGTTCGTCTAATT+CGG + chr1_1:4836845-4836864 None:intergenic 45.0%
TTCTCGAACTTCAACCCCTA+GGG + chr1_1:4836908-4836927 None:intergenic 45.0%
CACAGCCAGGTTTATGTTTG+AGG + chr1_1:4836971-4836990 None:intergenic 45.0%
CTCAAACATAAACCTGGCTG+TGG - chr1_1:4836969-4836988 Msa0002690:CDS 45.0%
ATGAAGAATTCTCCACAGCC+AGG + chr1_1:4836984-4837003 None:intergenic 45.0%
TGGCTGTGGAGAATTCTTCA+TGG - chr1_1:4836983-4837002 Msa0002690:CDS 45.0%
!! GCTTTTGATTGTGATGCTCC+TGG - chr1_1:4837054-4837073 Msa0002690:CDS 45.0%
AATTCAAATCTCCTCGGGGA+TGG + chr1_1:4837398-4837417 None:intergenic 45.0%
CCAGAACACAGAGTCTATGT+AGG + chr1_1:4837550-4837569 None:intergenic 45.0%
CCTACATAGACTCTGTGTTC+TGG - chr1_1:4837547-4837566 Msa0002690:CDS 45.0%
CAAGTCGAACTGTCTCTGAA+AGG + chr1_1:4837637-4837656 None:intergenic 45.0%
!! CTAGTGGTTATGAGGGTGTT+CGG - chr1_1:4837705-4837724 Msa0002690:CDS 45.0%
!! TAGTGGTTATGAGGGTGTTC+GGG - chr1_1:4837706-4837725 Msa0002690:CDS 45.0%
GGCTTACTAACACAGTTGGA+TGG - chr1_1:4837741-4837760 Msa0002690:CDS 45.0%
GAAGCTGGTGCAAACATTCT+TGG - chr1_1:4837877-4837896 Msa0002690:exon 45.0%
ACAACAGGGAAAAAGGGGAA+AGG + chr1_1:4838133-4838152 None:intergenic 45.0%
CAGCTGCTGAGACTGATGAT+TGG + chr1_1:4832414-4832433 None:intergenic 50.0%
! GGACAGGATGGATGCAGTTT+TGG - chr1_1:4832624-4832643 Msa0002690:intron 50.0%
GGTGTTTCCATCAATGCCTG+AGG - chr1_1:4832645-4832664 Msa0002690:intron 50.0%
!! CTCATCACCTCAGGCATTGA+TGG + chr1_1:4832655-4832674 None:intergenic 50.0%
CATCAATGCCTGAGGTGATG+AGG - chr1_1:4832653-4832672 Msa0002690:intron 50.0%
GCTTGTGAGGACTTTGCCTA+AGG - chr1_1:4832792-4832811 Msa0002690:CDS 50.0%
CTTGGATGATCCTGTCTAGC+AGG + chr1_1:4833339-4833358 None:intergenic 50.0%
CTGCTAGACAGGATCATCCA+AGG - chr1_1:4833337-4833356 Msa0002690:intron 50.0%
GTTGCATTGCCAGAGCTAGA+TGG - chr1_1:4833483-4833502 Msa0002690:CDS 50.0%
! TCCATTCCTCCATCTAGCTC+TGG + chr1_1:4833495-4833514 None:intergenic 50.0%
! ATGGAGCCGATAGTTTTCGC+TGG - chr1_1:4833510-4833529 Msa0002690:CDS 50.0%
! AGCCGATAGTTTTCGCTGGT+CGG - chr1_1:4833514-4833533 Msa0002690:CDS 50.0%
TCCCGACCAGCGAAAACTAT+CGG + chr1_1:4833519-4833538 None:intergenic 50.0%
TCACGCTCTTCACAAGAGAG+TGG - chr1_1:4834025-4834044 Msa0002690:CDS 50.0%
TTTGCACCAGGGCAATCAGA+TGG - chr1_1:4834054-4834073 Msa0002690:CDS 50.0%
TTGCACCAGGGCAATCAGAT+GGG - chr1_1:4834055-4834074 Msa0002690:CDS 50.0%
TTCAGTTTCCCGCCAGACAA+AGG - chr1_1:4834794-4834813 Msa0002690:CDS 50.0%
CCGCCAGACAAAGGAAATGT+AGG - chr1_1:4834803-4834822 Msa0002690:CDS 50.0%
GAAAATTGGGGAAAGCCTCC+TGG - chr1_1:4835049-4835068 Msa0002690:CDS 50.0%
TGCGGATGGAGAGAATCTGT+TGG - chr1_1:4835081-4835100 Msa0002690:CDS 50.0%
GCTACGAAGGTGATCCTATG+CGG - chr1_1:4835155-4835174 Msa0002690:CDS 50.0%
GGTTCCCTTGAATTCATGCC+TGG - chr1_1:4835283-4835302 Msa0002690:intron 50.0%
TTCATGCCTGGAAAGCAGGT+AGG - chr1_1:4835295-4835314 Msa0002690:intron 50.0%
TCATGCCTGGAAAGCAGGTA+GGG - chr1_1:4835296-4835315 Msa0002690:intron 50.0%
GTTATCCCGACAGTCTGATC+GGG - chr1_1:4835332-4835351 Msa0002690:intron 50.0%
TGCTGCAAACAACCCTTCAG+AGG - chr1_1:4835378-4835397 Msa0002690:intron 50.0%
TGGCTATGGTAGCCTCTGAA+GGG + chr1_1:4835393-4835412 None:intergenic 50.0%
TTGGCTATGGTAGCCTCTGA+AGG + chr1_1:4835394-4835413 None:intergenic 50.0%
ATTTGCGTAGCTCCTGCGTT+TGG + chr1_1:4835413-4835432 None:intergenic 50.0%
! TACAGTCCTGCATTTTCGGC+TGG + chr1_1:4835457-4835476 None:intergenic 50.0%
CTCGTCGTATCAGTCACTCA+AGG - chr1_1:4835507-4835526 Msa0002690:intron 50.0%
CAAGGATGTGGATTTGCCAG+AGG - chr1_1:4835594-4835613 Msa0002690:intron 50.0%
GATGTGGATTTGCCAGAGGA+GGG - chr1_1:4835598-4835617 Msa0002690:intron 50.0%
!! GCGAGATCTTGTTGTTGGGA+AGG - chr1_1:4835642-4835661 Msa0002690:intron 50.0%
CCAATGACATGGAGTCCACA+AGG + chr1_1:4835706-4835725 None:intergenic 50.0%
CCTTGTGGACTCCATGTCAT+TGG - chr1_1:4835703-4835722 Msa0002690:intron 50.0%
CATAGCTGCACTTGATCGTG+TGG - chr1_1:4835768-4835787 Msa0002690:intron 50.0%
GCACTTGATCGTGTGGAAGA+AGG - chr1_1:4835775-4835794 Msa0002690:intron 50.0%
AGCTAGTATAGAAGGGAGGG+AGG + chr1_1:4835806-4835825 None:intergenic 50.0%
AATTGCTCCGCGTGATGCTT+CGG + chr1_1:4835914-4835933 None:intergenic 50.0%
TATGCCGAATCCAAGGATGG+AGG + chr1_1:4836001-4836020 None:intergenic 50.0%
GCTCGTTTATGCCGAATCCA+AGG + chr1_1:4836008-4836027 None:intergenic 50.0%
GATTCGGCATAAACGAGCCA+TGG - chr1_1:4836010-4836029 Msa0002690:intron 50.0%
CTCTCCATTGCTGCTGTAGT+AGG + chr1_1:4836270-4836289 None:intergenic 50.0%
AGTACAAGGGCAACTGTCTC+AGG + chr1_1:4836354-4836373 None:intergenic 50.0%
AGACAGTTGCCCTTGTACTG+TGG - chr1_1:4836355-4836374 Msa0002690:intron 50.0%
GACAGTTGCCCTTGTACTGT+GGG - chr1_1:4836356-4836375 Msa0002690:intron 50.0%
ACAGTTGCCCTTGTACTGTG+GGG - chr1_1:4836357-4836376 Msa0002690:intron 50.0%
AATCCCTTGCTCAGGTTCTG+TGG - chr1_1:4836406-4836425 Msa0002690:intron 50.0%
CATCCACAGAACCTGAGCAA+GGG + chr1_1:4836412-4836431 None:intergenic 50.0%
TCATCCACAGAACCTGAGCA+AGG + chr1_1:4836413-4836432 None:intergenic 50.0%
GCTCAGGTTCTGTGGATGAT+TGG - chr1_1:4836414-4836433 Msa0002690:intron 50.0%
CGATAGCTGATAACCTCGGA+AGG - chr1_1:4836445-4836464 Msa0002690:intron 50.0%
CCAAGCTCTTCAAGGCTTAC+AGG + chr1_1:4836486-4836505 None:intergenic 50.0%
CCTGTAAGCCTTGAAGAGCT+TGG - chr1_1:4836483-4836502 Msa0002690:CDS 50.0%
TTAACGACGACGTCAACCCT+AGG + chr1_1:4836513-4836532 None:intergenic 50.0%
GACGTCGTCGTTAATTGCTC+TGG - chr1_1:4836519-4836538 Msa0002690:CDS 50.0%
ATGGAACAAGCTGAAGCCCT+AGG - chr1_1:4836889-4836908 Msa0002690:CDS 50.0%
TGGAACAAGCTGAAGCCCTA+GGG - chr1_1:4836890-4836909 Msa0002690:CDS 50.0%
CTTCTCGAACTTCAACCCCT+AGG + chr1_1:4836909-4836928 None:intergenic 50.0%
AAGTTCGAGAAGCCGCAACA+AGG - chr1_1:4836917-4836936 Msa0002690:CDS 50.0%
AGGATCTTCTCCAATGCCTC+AGG - chr1_1:4836937-4836956 Msa0002690:CDS 50.0%
GTTTGAGGAGTAGGATCCTG+AGG + chr1_1:4836956-4836975 None:intergenic 50.0%
! TTTTCAGTCATGCCTGCACC+AGG + chr1_1:4837075-4837094 None:intergenic 50.0%
GGGAGATTTCCGATGAGTCA+AGG + chr1_1:4837149-4837168 None:intergenic 50.0%
!!! TTTTACCTGGGCATTGGCAG+TGG + chr1_1:4837271-4837290 None:intergenic 50.0%
! TGAAAGGGTGCGTACCTGAA+AGG + chr1_1:4837621-4837640 None:intergenic 50.0%
! CCATTTGGGGTTCAACAGCT+TGG + chr1_1:4837669-4837688 None:intergenic 50.0%
CCAAGCTGTTGAACCCCAAA+TGG - chr1_1:4837666-4837685 Msa0002690:CDS 50.0%
GTGTTCGGGAAATCGAGAAG+AGG - chr1_1:4837720-4837739 Msa0002690:CDS 50.0%
GTTGGATGGAGTGCAACTTC+TGG - chr1_1:4837755-4837774 Msa0002690:CDS 50.0%
GCACAAATCCCAACTCCTTC+AGG - chr1_1:4837855-4837874 Msa0002690:CDS 50.0%
ACCAGCTTCCTGAAGGAGTT+GGG + chr1_1:4837866-4837885 None:intergenic 50.0%
TGTTTGCACCAGCTTCCTGA+AGG + chr1_1:4837873-4837892 None:intergenic 50.0%
TTCTTGGAAGCCAATGGACG+CGG - chr1_1:4837893-4837912 Msa0002690:exon 50.0%
AAGCCAATGGACGCGGATAT+TGG - chr1_1:4837900-4837919 Msa0002690:five_prime_UTR 50.0%
AGCCAATGGACGCGGATATT+GGG - chr1_1:4837901-4837920 Msa0002690:five_prime_UTR 50.0%
TTCCCAATATCCGCGTCCAT+TGG + chr1_1:4837906-4837925 None:intergenic 50.0%
GAGGCAGTTGTACTCAGAAG+TGG - chr1_1:4837952-4837971 Msa0002690:five_prime_UTR 50.0%
TGGTGAAAGTTTGGCCCACG+TGG + chr1_1:4831820-4831839 None:intergenic 55.0%
TCTAGCCCTCCGGCGAAAAT+TGG + chr1_1:4833216-4833235 None:intergenic 55.0%
! CGCCGGAGGGCTAGATTTTT+CGG - chr1_1:4833221-4833240 Msa0002690:intron 55.0%
! GCCGGAGGGCTAGATTTTTC+GGG - chr1_1:4833222-4833241 Msa0002690:intron 55.0%
CCCCGAAAAATCTAGCCCTC+CGG + chr1_1:4833226-4833245 None:intergenic 55.0%
! CCGGAGGGCTAGATTTTTCG+GGG - chr1_1:4833223-4833242 Msa0002690:intron 55.0%
!!! AGGGCTAGATTTTTCGGGGC+CGG - chr1_1:4833227-4833246 Msa0002690:intron 55.0%
GCATTGCCAGAGCTAGATGG+AGG - chr1_1:4833486-4833505 Msa0002690:CDS 55.0%
GCCAGAGCTAGATGGAGGAA+TGG - chr1_1:4833491-4833510 Msa0002690:CDS 55.0%
! GCCGATAGTTTTCGCTGGTC+GGG - chr1_1:4833515-4833534 Msa0002690:CDS 55.0%
AGTGGAGCAGCTTTGCACCA+GGG - chr1_1:4834043-4834062 Msa0002690:CDS 55.0%
TGGCATAGGGAGTGAGAGCT+TGG + chr1_1:4835018-4835037 None:intergenic 55.0%
GCCTCCTGGGAATCTGAATG+CGG - chr1_1:4835063-4835082 Msa0002690:CDS 55.0%
TCCGCATTCAGATTCCCAGG+AGG + chr1_1:4835067-4835086 None:intergenic 55.0%
CCATCCGCATTCAGATTCCC+AGG + chr1_1:4835070-4835089 None:intergenic 55.0%
CCTGGGAATCTGAATGCGGA+TGG - chr1_1:4835067-4835086 Msa0002690:CDS 55.0%
CTCATCCCTACCTGCTTTCC+AGG + chr1_1:4835304-4835323 None:intergenic 55.0%
AGGCTACCATAGCCAAACGC+AGG - chr1_1:4835398-4835417 Msa0002690:intron 55.0%
GTAGCTCCTGCGTTTGGCTA+TGG + chr1_1:4835407-4835426 None:intergenic 55.0%
ACTCCTCCAGCCGAAAATGC+AGG - chr1_1:4835448-4835467 Msa0002690:intron 55.0%
! AGTCCTGCATTTTCGGCTGG+AGG + chr1_1:4835454-4835473 None:intergenic 55.0%
GGATGTGGATTTGCCAGAGG+AGG - chr1_1:4835597-4835616 Msa0002690:intron 55.0%
CATGGAGTCCACAAGGCAAC+AGG + chr1_1:4835699-4835718 None:intergenic 55.0%
TGGGTGGCTCACCAATGACA+TGG + chr1_1:4835717-4835736 None:intergenic 55.0%
TTTGTAGAGCCAGGACCTGG+AGG - chr1_1:4836174-4836193 Msa0002690:intron 55.0%
GGAACAAGCTGAAGCCCTAG+GGG - chr1_1:4836891-4836910 Msa0002690:CDS 55.0%
GGAGTAGGATCCTGAGGCAT+TGG + chr1_1:4836950-4836969 None:intergenic 55.0%
GATTGTGATGCTCCTGGTGC+AGG - chr1_1:4837060-4837079 Msa0002690:CDS 55.0%
TCCCAACTCCTTCAGGAAGC+TGG - chr1_1:4837862-4837881 Msa0002690:CDS 55.0%
CACCAGCTTCCTGAAGGAGT+TGG + chr1_1:4837867-4837886 None:intergenic 55.0%
TGTTGGAGGGCCTGCTAGAC+AGG - chr1_1:4833326-4833345 Msa0002690:intron 60.0%
GCTGGTCGGGATCCCAAAAC+AGG - chr1_1:4833528-4833547 Msa0002690:CDS 60.0%
GAGTGGAGCAGCTTTGCACC+AGG - chr1_1:4834042-4834061 Msa0002690:CDS 60.0%
CTCAGCCCATCTGATTGCCC+TGG + chr1_1:4834063-4834082 None:intergenic 60.0%
TCACTCAAGGACACTGGCCG+CGG - chr1_1:4835520-4835539 Msa0002690:intron 60.0%
GGATTTGCCAGAGGAGGGTG+TGG - chr1_1:4835603-4835622 Msa0002690:intron 60.0%
GAGTCCACAAGGCAACAGGC+GGG + chr1_1:4835695-4835714 None:intergenic 60.0%
GGAGTCCACAAGGCAACAGG+CGG + chr1_1:4835696-4835715 None:intergenic 60.0%
TTTCTGATCGGGTCGCCTCC+AGG + chr1_1:4836192-4836211 None:intergenic 60.0%
CTACACGGTTGACCCTTCCG+AGG + chr1_1:4836461-4836480 None:intergenic 60.0%
TACCACCACTGCCAATGCCC+AGG - chr1_1:4837263-4837282 Msa0002690:CDS 60.0%
!! TACCTGGGCATTGGCAGTGG+TGG + chr1_1:4837268-4837287 None:intergenic 60.0%
GGAAGCTCCACACCCTCCTC+TGG + chr1_1:4835613-4835632 None:intergenic 65.0%
GAGTCCCGCCTGTTGCCTTG+TGG - chr1_1:4835688-4835707 Msa0002690:intron 65.0%
ATCGGGTCGCCTCCAGGTCC+TGG + chr1_1:4836186-4836205 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4831742 4838290 4831742 ID=Msa0002690;Name=Msa0002690
chr1_1 mRNA 4831742 4838290 4831742 ID=Msa0002690-mRNA-1;Parent=Msa0002690;Name=Msa0002690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=397|1|1|1|1|1|5|287|1383
chr1_1 exon 4831742 4832406 4831742 ID=Msa0002690-mRNA-1:exon:1467;Parent=Msa0002690-mRNA-1
chr1_1 exon 4832748 4833224 4832748 ID=Msa0002690-mRNA-1:exon:1466;Parent=Msa0002690-mRNA-1
chr1_1 exon 4833463 4835265 4833463 ID=Msa0002690-mRNA-1:exon:1465;Parent=Msa0002690-mRNA-1
chr1_1 exon 4835932 4836014 4835932 ID=Msa0002690-mRNA-1:exon:1464;Parent=Msa0002690-mRNA-1
chr1_1 exon 4836483 4838290 4836483 ID=Msa0002690-mRNA-1:exon:1463;Parent=Msa0002690-mRNA-1
chr1_1 five_prime_UTR 4837894 4838290 4837894 ID=Msa0002690-mRNA-1:five_prime_utr;Parent=Msa0002690-mRNA-1
chr1_1 CDS 4836483 4837893 4836483 ID=Msa0002690-mRNA-1:cds;Parent=Msa0002690-mRNA-1
chr1_1 CDS 4835932 4836014 4835932 ID=Msa0002690-mRNA-1:cds;Parent=Msa0002690-mRNA-1
chr1_1 CDS 4833463 4835265 4833463 ID=Msa0002690-mRNA-1:cds;Parent=Msa0002690-mRNA-1
chr1_1 CDS 4832748 4833224 4832748 ID=Msa0002690-mRNA-1:cds;Parent=Msa0002690-mRNA-1
chr1_1 CDS 4832029 4832406 4832029 ID=Msa0002690-mRNA-1:cds;Parent=Msa0002690-mRNA-1
chr1_1 three_prime_UTR 4831742 4832028 4831742 ID=Msa0002690-mRNA-1:three_prime_utr;Parent=Msa0002690-mRNA-1
Gene Sequence

>Msa0002690

ATGGCTTCATTTTTATCAACACCATTTACTCTACCAAATTCTAAAGTTGATCAACTTTCTTCAGTTGCTCAAAGACATCTTTTTCTTCATTCATTCCTTCCTAAGAAAACCAATTACTATGGTAACTCAAAAGCTTCCTTTAGATTGAAATGCAATGCAATTGGTAATGGTTTGTTCACTCAAACAACTCAAGAAGTTCGTAGAATAGTACCAGAAAACAAGCAAAACTTACCAACAGTGAAAATTGTGTATGTTGTTCTTGAAGCTCAGTACCAATCATCAGTCTCAGCAGCTGTTAGAGAACTCAACAGCAATCAGAATGATGCTTCTTTTGAAGTTGTCGGTTACTTAGTCGAGGAGCTTCGCGACAAATCAACGTACGAAACATTCTGCAAGGATTTAGAAGATGCTAATATCTTCATTGGTTCATTGATTTTTGTTGAGGAGCTAGCACTGAAAGTGAAAGCTGCTGTTGAGAAAGAAAGGGACAGGATGGATGCAGTTTTGGTGTTTCCATCAATGCCTGAGGTGATGAGGTTGAACAAATTGGGCTCTTTTAGTATGTCACAACTTGGACAATCTAAAAGTCCTTTTTTTCAGCTTTTCAAGAAGAAGAATACTTCTTCAGCTGGTTTTGCTGATAGCATGTTGAAGCTTGTGAGGACTTTGCCTAAGGTTTTGAAGTATTTACCAAGTGATAAAGCTCAAGATGCTAGGCTTTATATCTTGAGTCTACAGTTTTGGCTTGGTGGGTCACCTGATAATTTGCAGAATTTCTTGAAGATGATTTCTGGTTCTTATGTTCCAGCATTGAAAGGTACAAAGATGGAGTATTCTGATCCTGTTTTGTTTTTAGATAATGGAATTTGGCACCCTTTAGCACCTTGTATGTATGATGATGTCAAAGAGTATTTGAATTGGTATGGAACTAGAAGGGATGCTAATGAGAAACTAAAGAGTTCAAATGCACCTGTTGTTGGTTTGGTTTTGCAAAGGAGTCATATTGTTACTGGTGATGATGGTCATTACGTTGCTGTGATTATGGAACTTGAGGCTAAAGGTGCTAAGGTTATTCCAATTTTCGCCGGAGGGCTAGATTTTTCGGGGCCGGTTGAGAAGTTCTTCATTGATCCTATTACTAAGAAACCATTTGTGAATTCTGTGATATCTCTCACTGGATTTGCTCTTGTTGGAGGGCCTGCTAGACAGGATCATCCAAGGGCTATTGAAGCTTTGATGAAGCTTGATGTTCCTTATATTGTTGCTTTGCCACTGGTTTTCCAGACAACTGAAGAGTGGTTGAATAGTACTTTGGGTTTGCATCCAATTCAAGTTGCTCTTCAAGTTGCATTGCCAGAGCTAGATGGAGGAATGGAGCCGATAGTTTTCGCTGGTCGGGATCCCAAAACAGGAAAATCTCACGCTCTTCACAAGAGAGTGGAGCAGCTTTGCACCAGGGCAATCAGATGGGCTGAGTTGAAAAGAAAAACAAAGGAAGACAAGAAACTAGCAATCACTGTCTTCAGTTTCCCGCCAGACAAAGGAAATGTAGGAACCGCTGCGTACCTAAACGTTTTCTCCTCCATTTTCTCTGTTCTAAAAGAACTTCAAAGTGATGGTTACAATGTTGAAGGTCTTCCCGAGACTTCAGAAGCATTGATTGAAGATATATTACATGACAAAGAAGCACAATTCAGCAGCCCAAATCTCAACATTGCTTACAAAATGAACGTCCGTGAATACCAAGCTCTCACTCCCTATGCCACAGCATTAGAAGAAAATTGGGGAAAGCCTCCTGGGAATCTGAATGCGGATGGAGAGAATCTGTTGGTATATGGTAAGCAATATGGTAATGTATTCATAGGTGTTCAACCTACATTTGGCTACGAAGGTGATCCTATGCGGTTACTTTTCTCCAAATCTGCAAGCCCTCATCATGGTTTTGCAGCATATTACTCTTTTGTCGAGAAAATTTTCAAAGCTGATGCTGTTCTTCATTTCGGCACACACGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTAGGGATGAGTGATGTATGTTATCCCGACAGTCTGATCGGGAATATTCCAAATGTCTATTACTATGCTGCAAACAACCCTTCAGAGGCTACCATAGCCAAACGCAGGAGCTACGCAAATACCATAAGCTATCTTACTCCTCCAGCCGAAAATGCAGGACTGTACAAGGGTCTTAAGCAGTTAAGTGAACTCATCTCGTCGTATCAGTCACTCAAGGACACTGGCCGCGGTCAACAAATTGTGAGTTCAATTATTAGCACGGCTAAACAATGCAATCTCGACAAGGATGTGGATTTGCCAGAGGAGGGTGTGGAGCTTCCCACTAAAGAGCGAGATCTTGTTGTTGGGAAGGTGTATGCTAAGATCATGGAGATTGAGTCCCGCCTGTTGCCTTGTGGACTCCATGTCATTGGTGAGCCACCCACAGCCATGGAAGCAGTTGCTACATTGGTGAACATAGCTGCACTTGATCGTGTGGAAGAAGGTATTTCCTCCCTCCCTTCTATACTAGCTCAGAGTGTAGGAAGAAACATAGAGGAAATTTATAGAAGCAGTGACAAAGGAGTATTAAAGGATGTAGAGCTTCTTCGGCAAATAACCGAAGCATCACGCGGAGCAATTACTTCCTTTGTAGAGCGCACTACTAATAGTAAGGGTCAAGTTGTAGATGTATCTAATAAACTTACCTCCATCCTTGGATTCGGCATAAACGAGCCATGGATTCAGTACTTGTCGGATACCAAATTTTACCGAGGTGATAGGGAAAAGCTCAGAATTTTGTTTGAGTACTTGGGAGAATGTTTGAGGTTAATTGTAGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATTTGTAGAGCCAGGACCTGGAGGCGACCCGATCAGAAACCCTAAAGTTTTACCAACAGGAAAGAATATTCATGCCCTGGATCCACAATCTATTCCTACTACAGCAGCAATGGAGAGTGCCAAAATAGTGGTAGAGAGATTGCTTGAAAGGCAAAAAATTGATAATGGAGGAAAGTATCCTGAGACAGTTGCCCTTGTACTGTGGGGAACAGATAATATTAAGACATATGGAGAATCCCTTGCTCAGGTTCTGTGGATGATTGGTGTAAATCCGATAGCTGATAACCTCGGAAGGGTCAACCGTGTAGAACCTGTAAGCCTTGAAGAGCTTGGAAGACCTAGGGTTGACGTCGTCGTTAATTGCTCTGGAGTATTCAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCCGAATTAGACGAACCAGCAGAGATGAACTATGTAAGGAAGCATGCAATGGAACAAGCTGAAGCCCTAGGGGTTGAAGTTCGAGAAGCCGCAACAAGGATCTTCTCCAATGCCTCAGGATCCTACTCCTCAAACATAAACCTGGCTGTGGAGAATTCTTCATGGAATGATGAGAAGCAGCTCCAAGACATGTACCTTAGCAGAAAGTCTTTTGCTTTTGATTGTGATGCTCCTGGTGCAGGCATGACTGAAAAAAGACAAGTCTTTGAGATGGCTCTCAGCACAGCAGACGCCACTTTCCAAAACCTTGACTCATCGGAAATCTCCCTCACTGATGTCAGTCATTACTTTGATTCAGACCCCACTAACCTTGTTCAAAATTTAAGGAAAGATGGGAAGAAGCCAAGTGCATATATTGCTGATACCACCACTGCCAATGCCCAGGTACGCACCCTTTCAGAGACAGTTCGACTTGATGCAAGAACCAAGCTGTTGAACCCCAAATGGTATGAAGGCATGTTATCTAGTGGTTATGAGGGTGTTCGGGAAATCGAGAAGAGGCTTACTAACACAGTTGGATGGAGTGCAACTTCTGGACAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATTCAAGACGAGGAAATGTTGAAGAAGCTGATGAGCACAAATCCCAACTCCTTCAGGAAGCTGGTGCAAACATTCTTGGAAGCCAATGGACGCGGATATTGGGAAACTGAAGAAGAAAACATTGAGAAGTTGAGGCAGTTGTACTCAGAAGTGGAAGATAAAATTGAAGGCATTGATCGCTGA
Protein sequence

>Msa0002690

MASFLSTPFTLPNSKVDQLSSVAQRHLFLHSFLPKKTNYYGNSKASFRLKCNAIGNGLFTQTTQEVRRIVPENKQNLPTVKIVYVVLEAQYQSSVSAAVRELNSNQNDASFEVVGYLVEELRDKSTYETFCKDLEDANIFIGSLIFVEELALKVKAAVEKERDRMDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKNTSSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKMEYSDPVLFLDNGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSSNAPVVGLVLQRSHIVTGDDGHYVAVIMELEAKGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVISLTGFALVGGPARQDHPRAIEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIRWAELKRKTKEDKKLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELQSDGYNVEGLPETSEALIEDILHDKEAQFSSPNLNIAYKMNVREYQALTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGQQIVSSIISTAKQCNLDKDVDLPEEGVELPTKERDLVVGKVYAKIMEIESRLLPCGLHVIGEPPTAMEAVATLVNIAALDRVEEGISSLPSILAQSVGRNIEEIYRSSDKGVLKDVELLRQITEASRGAITSFVERTTNSKGQVVDVSNKLTSILGFGINEPWIQYLSDTKFYRGDREKLRILFEYLGECLRLIVADNEVGSLKQALEGKFVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTAAMESAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVNPIADNLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEMNYVRKHAMEQAEALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMTEKRQVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLKKLMSTNPNSFRKLVQTFLEANGRGYWETEEENIEKLRQLYSEVEDKIEGIDR*