AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729120 MtrunA17_Chr5g0422391 98.195 997 18 0 1 997 1 997 0.0 1984
Msa0729120 MtrunA17_Chr1g0198861 66.371 1014 288 18 1 996 1 979 0.0 1184
Msa0729120 MtrunA17_Chr1g0151531 52.500 360 148 3 621 977 407 746 4.53e-114 369
Msa0729120 MtrunA17_Chr1g0151531 37.712 236 84 6 126 361 128 300 8.20e-29 124
Msa0729120 MtrunA17_Chr4g0045981 57.353 272 110 3 715 984 346 613 1.35e-98 323
Msa0729120 MtrunA17_Chr4g0069431 46.565 262 140 0 718 979 296 557 4.50e-80 272
Msa0729120 MtrunA17_Chr5g0430701 43.382 272 147 4 707 976 151 417 1.96e-67 233
Msa0729120 MtrunA17_Chr8g0340991 37.280 397 233 6 108 493 121 512 2.56e-60 217
Msa0729120 MtrunA17_Chr2g0330791 33.761 468 273 11 1 453 13 458 4.10e-60 215
Msa0729120 MtrunA17_Chr2g0307341 32.599 454 252 13 110 548 33 447 1.22e-41 161
Msa0729120 MtrunA17_Chr1g0179671 25.781 256 180 3 125 375 98 348 3.48e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729120 AT3G25690.1 69.921 1014 242 15 1 981 1 984 0.0 1234
Msa0729120 AT3G25690.2 69.921 1014 242 15 1 981 1 984 0.0 1234
Msa0729120 AT3G25690.6 69.921 1014 242 15 1 981 1 984 0.0 1234
Msa0729120 AT3G25690.4 69.921 1014 242 15 1 981 1 984 0.0 1234
Msa0729120 AT3G25690.5 70.238 1008 237 16 7 981 9 986 0.0 1225
Msa0729120 AT3G25690.3 66.132 499 133 9 191 675 53 529 0.0 568
Msa0729120 AT4G18570.1 56.429 280 105 4 715 984 352 624 2.51e-93 310
Msa0729120 AT1G48280.1 46.415 265 142 0 715 979 278 542 1.28e-81 276
Msa0729120 AT1G07120.1 47.529 263 129 5 716 976 128 383 2.01e-71 243
Msa0729120 AT1G52080.2 33.394 548 293 15 1 502 13 534 1.30e-63 226
Msa0729120 AT1G52080.1 33.394 548 293 15 1 502 13 534 1.30e-63 226
Msa0729120 AT4G18570.2 53.846 208 81 3 715 912 352 554 2.25e-62 223
Msa0729120 AT1G07120.2 45.729 199 103 3 716 912 128 323 1.00e-48 176

Find 254 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCCATTTCTTCAATTTC+TGG 0.106112 5_1:-35590521 None:intergenic
AATTTCACATCTATATTTAT+AGG 0.137988 5_1:-35593588 None:intergenic
TTGCTTAAACAACAAGTTTC+TGG 0.139596 5_1:+35589324 Msa0729120:CDS
ATTTGAAGGAATGCATAATT+TGG 0.162253 5_1:+35588396 Msa0729120:five_prime_UTR
CCCTAGCCATGGCCAATTTA+TGG 0.175617 5_1:-35590872 None:intergenic
AATATAGATGTGAAATTTAA+AGG 0.198079 5_1:+35593594 Msa0729120:three_prime_UTR
CTCCGCTTGCAGAGAATTAA+TGG 0.200637 5_1:-35589169 None:intergenic
TGATGAGTATTCTATGTTTC+TGG 0.205149 5_1:-35593261 None:intergenic
ATTTCACGGTACAGAGAATT+TGG 0.209559 5_1:+35592350 Msa0729120:CDS
TTGCCTTCGCTTGTGATTTC+GGG 0.216812 5_1:-35590332 None:intergenic
CTTGAGGGGCTTGAGGGGTT+TGG 0.222362 5_1:-35593215 None:intergenic
TTTGCCTTCGCTTGTGATTT+CGG 0.223108 5_1:-35590333 None:intergenic
CTAGCAGTATTAGGAGTTTC+AGG 0.254443 5_1:-35590726 None:intergenic
GAATCTTGTAGCCAGTTTAT+TGG 0.264027 5_1:-35592377 None:intergenic
GTTGAAGGAATAATCAGTTT+TGG 0.265958 5_1:+35588341 Msa0729120:five_prime_UTR
AAAGCAAGAGTTCAGAAGTT+TGG 0.275073 5_1:+35590921 Msa0729120:CDS
AGCAACTTCACATGAGAGTT+TGG 0.283106 5_1:-35592094 None:intergenic
TTTCAGGCAGTTCTCCAAAA+AGG 0.293704 5_1:+35590589 Msa0729120:CDS
GATAAAAGGTCTTCAAATTC+TGG 0.297145 5_1:-35588892 None:intergenic
ATAAACTGGCTACAAGATTC+TGG 0.304894 5_1:+35592380 Msa0729120:CDS
AATCTTGTAGCCAGTTTATT+GGG 0.305182 5_1:-35592376 None:intergenic
ATATCAAGATCTGATGAAAT+TGG 0.306706 5_1:+35592041 Msa0729120:CDS
AGACCAGCACTAGCAGTATT+AGG 0.325676 5_1:-35590735 None:intergenic
GGCAAACTTTATCTTGCTAA+TGG 0.330666 5_1:-35591093 None:intergenic
CACCAACTTGAGGGGCTTGA+GGG 0.334010 5_1:-35593221 None:intergenic
GTATAAAGATCGCCATAAAT+TGG 0.334328 5_1:+35590860 Msa0729120:CDS
TCTGAACTTGATGCATTATC+TGG 0.340915 5_1:+35592753 Msa0729120:CDS
AAGCAAGAGTTCAGAAGTTT+GGG 0.342986 5_1:+35590922 Msa0729120:CDS
GCAGATGGTATTCCATTTGC+AGG 0.343966 5_1:-35591197 None:intergenic
ACTCAATCTCTCCAGATAAA+AGG 0.348637 5_1:-35588906 None:intergenic
AAGAACACTAGAATCATCTT+TGG 0.349582 5_1:-35590547 None:intergenic
GAAAGCTGTGAATGATTTAG+AGG 0.350300 5_1:+35589404 Msa0729120:CDS
TAATCCAGAAATTGAAGAAA+TGG 0.351637 5_1:+35590517 Msa0729120:CDS
TTGTCAAAATCTTCACTTCC+TGG 0.354802 5_1:-35590438 None:intergenic
ACCTAAACTTTCTAAAATAA+AGG 0.354901 5_1:+35591004 Msa0729120:CDS
GAGATTGAGTTATCATTTCC+TGG 0.357651 5_1:+35588919 Msa0729120:CDS
TTAGGTGGCAAAGATATATT+AGG 0.357928 5_1:-35590987 None:intergenic
TACTATCATGAAGCTTCTTT+AGG 0.358982 5_1:-35588431 None:intergenic
TGAGTATGAGTGTTAAATCT+AGG 0.365473 5_1:+35590613 Msa0729120:CDS
TCTCTAGCTGGTTCCTTCTC+AGG 0.365817 5_1:-35592777 None:intergenic
AGTGCATCTGCTTTACCTTC+AGG 0.366034 5_1:-35592000 None:intergenic
CCTGCTTTCATCACTGTTGA+AGG 0.369661 5_1:+35588326 Msa0729120:five_prime_UTR
GGAGGAAGAAGAGGAGAAAG+AGG 0.375017 5_1:+35588810 Msa0729120:CDS
ATCAATCTTGTTCCCCTAGC+TGG 0.376302 5_1:+35587989 Msa0729120:five_prime_UTR
ACCTGGTTGCCTTTGTGAAC+TGG 0.376411 5_1:+35591704 Msa0729120:CDS
ATCAAGTGACTCACTAAATT+CGG 0.378484 5_1:+35590770 Msa0729120:CDS
AGGTCTATCTCTTTCGATCT+TGG 0.378644 5_1:-35590967 None:intergenic
GGAGAATTGCTTGAGTACTA+TGG 0.381095 5_1:+35589063 Msa0729120:CDS
CTACAAGATTCTGGAGTTGT+AGG 0.385109 5_1:+35592389 Msa0729120:CDS
GTGATGAAACAGAATCCATT+TGG 0.386047 5_1:-35588303 None:intergenic
AATCCAGAAATTGAAGAAAT+GGG 0.386976 5_1:+35590518 Msa0729120:CDS
TTTATCAATCATTGATGAAA+CGG 0.394020 5_1:+35591369 Msa0729120:CDS
TTTCTTTAAATGATATTTGA+AGG 0.398349 5_1:+35588382 Msa0729120:five_prime_UTR
CTGTCTTGAAGCACTTTGAT+TGG 0.399397 5_1:+35591977 Msa0729120:CDS
GAACCACCACCTGATGGTTT+AGG 0.405766 5_1:-35591155 None:intergenic
CTGATGACTTGGACATCAAA+TGG 0.411116 5_1:-35590806 None:intergenic
TTGCTGTTGTGGAGCTTAAG+AGG 0.412288 5_1:+35589427 Msa0729120:CDS
TTTGAACTAGCATGAACAAT+TGG 0.413777 5_1:-35591032 None:intergenic
GAGTCTGACCTCTGTCATAT+TGG 0.414337 5_1:-35589529 None:intergenic
AGATGAAGAACTTTCCTTCC+TGG 0.419668 5_1:+35591729 Msa0729120:CDS
GCAACTTCACATGAGAGTTT+GGG 0.419767 5_1:-35592093 None:intergenic
TTATCAATCATTGATGAAAC+GGG 0.420903 5_1:+35591370 Msa0729120:CDS
TTTATCAGAAAGATAGATCA+TGG 0.425184 5_1:+35593562 Msa0729120:three_prime_UTR
GGTCTTCATTTGCGTGTCTC+AGG 0.427743 5_1:-35590152 None:intergenic
GGTCCACCTGGTGGAGGAGG+AGG 0.431071 5_1:-35591260 None:intergenic
CGCTTGAAAGCTTGATGATA+AGG 0.432388 5_1:+35590640 Msa0729120:CDS
TCATTATTAGTTTCTTCAAC+GGG 0.432976 5_1:+35591413 Msa0729120:CDS
AGTGAAGGAATTGGAGGAAA+GGG 0.434864 5_1:+35589026 Msa0729120:CDS
TCACCAACTTGAGGGGCTTG+AGG 0.435017 5_1:-35593222 None:intergenic
CCACCTGGTGGACGAGGAGG+AGG 0.435071 5_1:-35591236 None:intergenic
GTTGGCTAGAAACAAGATAA+AGG 0.435240 5_1:+35589248 Msa0729120:CDS
ATAGTCTTCCTGAGGGTGCC+TGG 0.437629 5_1:-35590281 None:intergenic
AGTAGCATTCACAATATAAT+CGG 0.438059 5_1:-35593408 None:intergenic
CTTGGAAGAGGTGGTGGAGG+AGG 0.438572 5_1:-35591284 None:intergenic
GATGGTTTAGGAGGTGGCCT+TGG 0.439613 5_1:-35591143 None:intergenic
GGAAGAGGTGGTGGAGGAGG+CGG 0.443722 5_1:-35591281 None:intergenic
TGGAAGGACTTCAAATGAAT+CGG 0.444993 5_1:+35590187 Msa0729120:CDS
TCTTCACTTCCTGGTGAAGA+AGG 0.445084 5_1:-35590429 None:intergenic
AATTTGGAATCCCAATAAAC+TGG 0.445616 5_1:+35592366 Msa0729120:CDS
GCTTGAGTACTATGGTTTGA+AGG 0.449241 5_1:+35589071 Msa0729120:CDS
GCTCAGAACTTGGTGAAGAA+AGG 0.450039 5_1:+35588614 Msa0729120:intron
GTCCTTCCACTTGCTTCGAC+AGG 0.450079 5_1:-35590173 None:intergenic
GGCGGTCCACCTGGTGGAGG+AGG 0.451744 5_1:-35591263 None:intergenic
CCTGGTGGACGAGGAGGAGG+AGG 0.452241 5_1:-35591233 None:intergenic
CCTCCTCCTCCTCGTCCACC+AGG 0.453292 5_1:+35591233 Msa0729120:CDS
GGTGGAGGAGGAGGTCCACC+TGG 0.456329 5_1:-35591251 None:intergenic
AAAGAAGCTTCATGATAGTA+AGG 0.457627 5_1:+35588434 Msa0729120:exon
TCGCTTGTGATTTCGGGCTA+AGG 0.462063 5_1:-35590326 None:intergenic
TTTCAATTTCTTGTCAATCT+CGG 0.462137 5_1:-35589385 None:intergenic
CCCTTGACCTCGTTCCGATC+CGG 0.464671 5_1:-35590376 None:intergenic
TTTGATAGGCCTCTTGGAAG+AGG 0.466831 5_1:-35591296 None:intergenic
CACTTCCTGGTGAAGAAGGA+TGG 0.468336 5_1:-35590425 None:intergenic
GGTGGACGAGGAGGAGGAGG+AGG 0.475864 5_1:-35591230 None:intergenic
TATCTTCTTCACCAACTTGA+GGG 0.477737 5_1:-35593230 None:intergenic
GTTGGGTCAATGCATGTTTG+AGG 0.480052 5_1:+35590241 Msa0729120:CDS
GTAGGTAGTGATGATGATCT+TGG 0.480147 5_1:-35593438 None:intergenic
GGTGGAGGAGGCGGTCCACC+TGG 0.480997 5_1:-35591272 None:intergenic
AGTGTAGCAATCACCACCTT+TGG 0.482526 5_1:+35590675 Msa0729120:CDS
GCCATAAATTGGCCATGGCT+AGG 0.484118 5_1:+35590871 Msa0729120:CDS
AACTTAGTAAAAGCTATGTT+AGG 0.484710 5_1:-35588234 None:intergenic
GGAGGTCCACCTGGTGGACG+AGG 0.485982 5_1:-35591242 None:intergenic
AATGAATTATACAGCTGAAA+GGG 0.486041 5_1:-35593335 None:intergenic
TCTTGGACTGCAGAGTGAAA+TGG 0.487052 5_1:+35590101 Msa0729120:intron
GGAGGCGGTCCACCTGGTGG+AGG 0.487730 5_1:-35591266 None:intergenic
GAAAGGGAAGTGAAACTTGA+AGG 0.490463 5_1:+35589042 Msa0729120:CDS
CTTCTCAGATATTGAAGACC+TGG 0.490941 5_1:+35591687 Msa0729120:CDS
CAGTTAAAACTAACCAGCTA+GGG 0.491494 5_1:-35588002 None:intergenic
CTTCAAGAAGAACTCACAAA+TGG 0.494267 5_1:+35589201 Msa0729120:CDS
CCATAAATTGGCCATGGCTA+GGG 0.494574 5_1:+35590872 Msa0729120:CDS
GGAGGAATGGATGGAGCAGA+TGG 0.495461 5_1:-35591212 None:intergenic
GATGCTAGGAACAACATGAT+TGG 0.496359 5_1:+35591446 Msa0729120:CDS
TGATTTAGAGGTTGCTGTTG+TGG 0.499894 5_1:+35589416 Msa0729120:CDS
ACAAACTCAAATCCTGCAAA+TGG 0.500332 5_1:+35591185 Msa0729120:CDS
TGATGAAACAGAATCCATTT+GGG 0.501425 5_1:-35588302 None:intergenic
ACAGTTAAAACTAACCAGCT+AGG 0.501609 5_1:-35588003 None:intergenic
GAGTATGAGTGTTAAATCTA+GGG 0.503061 5_1:+35590614 Msa0729120:CDS
AGGCCTCTTGGAAGAGGTGG+TGG 0.503884 5_1:-35591290 None:intergenic
GCGTCAGCTAGTGAAGGAAT+TGG 0.504568 5_1:+35589017 Msa0729120:CDS
ACTGTTAAGCAGCTCAATGT+TGG 0.505956 5_1:+35588493 Msa0729120:CDS
CCTTCAACAGTGATGAAAGC+AGG 0.508083 5_1:-35588326 None:intergenic
AGAACTCGTATACCTTCGTT+GGG 0.509500 5_1:+35590224 Msa0729120:CDS
GATGAAACGGGAAGCAAAGA+AGG 0.511061 5_1:+35591382 Msa0729120:CDS
GTTGTTTAAGCAACAAAAGT+TGG 0.511120 5_1:-35589314 None:intergenic
TTCTCCCATCCTTCTTCACC+AGG 0.512217 5_1:+35590420 Msa0729120:CDS
GTACTATGGTTTGAAGGAGC+AGG 0.512565 5_1:+35589077 Msa0729120:CDS
CTTCCAAGAGGCCTATCAAA+AGG 0.513794 5_1:+35591299 Msa0729120:CDS
TTCATTATTAGTTTCTTCAA+CGG 0.514402 5_1:+35591412 Msa0729120:CDS
AAGGTAAAGCAGATGCACTA+AGG 0.515387 5_1:+35592004 Msa0729120:CDS
CTATCTTCTTCACCAACTTG+AGG 0.515694 5_1:-35593231 None:intergenic
AAGAATCACCAGGCACCCTC+AGG 0.516205 5_1:+35590273 Msa0729120:CDS
AAGCACTTTGATTGGCCTGA+AGG 0.517950 5_1:+35591985 Msa0729120:CDS
TACCATTAATTCTCTGCAAG+CGG 0.518242 5_1:+35589167 Msa0729120:CDS
GCAATCACCACCTTTGGTCA+AGG 0.521162 5_1:+35590681 Msa0729120:CDS
ACCAACTTGAGGGGCTTGAG+GGG 0.521386 5_1:-35593220 None:intergenic
GCCGGATCGGAACGAGGTCA+AGG 0.521409 5_1:+35590375 Msa0729120:CDS
ACATTGAGAAAAGGCCTACT+CGG 0.522076 5_1:+35591117 Msa0729120:CDS
CTTGAGGCTAACCAAACAAA+AGG 0.522471 5_1:+35589291 Msa0729120:CDS
GGTGGACCTCCTCCTCCACC+AGG 0.523365 5_1:+35591254 Msa0729120:CDS
AAGAACTCGTATACCTTCGT+TGG 0.526358 5_1:+35590223 Msa0729120:CDS
GAGCTCCGCAACTCTAGATT+CGG 0.529048 5_1:-35589505 None:intergenic
GGAGAGTGATCTAAAAGAAA+AGG 0.532067 5_1:+35590893 Msa0729120:CDS
GCCAGTTCACAAAGGCAACC+AGG 0.533328 5_1:-35591705 None:intergenic
ATTGTTACGAACAAGAGATA+TGG 0.533942 5_1:+35592325 Msa0729120:CDS
AGCTTCATGATAGTAAGGTT+AGG 0.534874 5_1:+35588439 Msa0729120:exon
AGACGCATCAACTGATGACT+TGG 0.535247 5_1:-35590817 None:intergenic
AGGCCACCTCCTAAACCATC+AGG 0.539960 5_1:+35591146 Msa0729120:CDS
CCTCTTGGAAGAGGTGGTGG+AGG 0.541313 5_1:-35591287 None:intergenic
TTGATCCCCTTGACCAAAGG+TGG 0.543107 5_1:-35590688 None:intergenic
AGTTTGCCGACATTGAGAAA+AGG 0.544849 5_1:+35591108 Msa0729120:CDS
CTAAGAAAACATAATCAAGT+AGG 0.544933 5_1:-35593456 None:intergenic
GATAGGCCTCTTGGAAGAGG+TGG 0.550497 5_1:-35591293 None:intergenic
CCACCTGATGGTTTAGGAGG+TGG 0.550943 5_1:-35591149 None:intergenic
GGTGGCCTTGGTACCCGAGT+AGG 0.552272 5_1:-35591131 None:intergenic
ACTTCCTGGTGAAGAAGGAT+GGG 0.552850 5_1:-35590424 None:intergenic
TTCTTGATCCCCTTGACCAA+AGG 0.554015 5_1:-35590691 None:intergenic
CAATCACCACCTTTGGTCAA+GGG 0.554925 5_1:+35590682 Msa0729120:CDS
TGCATTATCTGGACCTGAGA+AGG 0.555945 5_1:+35592764 Msa0729120:CDS
CAAGAGATATGGCTATTTCA+CGG 0.556828 5_1:+35592336 Msa0729120:CDS
CTAGGGGAACAAGATTGATA+AGG 0.558485 5_1:-35587985 None:intergenic
CTTTGATGCAGAGAGCATGA+AGG 0.561581 5_1:+35593167 Msa0729120:CDS
AATGGTTGCAAAGGCAAAAG+AGG 0.562885 5_1:+35590119 Msa0729120:CDS
CAGCTGTATAATTCATTCTG+CGG 0.566200 5_1:+35593341 Msa0729120:three_prime_UTR
CAAAGTTTATGAAATTGAGA+TGG 0.567396 5_1:+35588966 Msa0729120:CDS
GGTGATTGCTACACTATCAC+TGG 0.567705 5_1:-35590667 None:intergenic
TCGGGCTAAGGTTCTTGCTG+AGG 0.567719 5_1:-35590314 None:intergenic
ATCTTCTTCACCAACTTGAG+GGG 0.568553 5_1:-35593229 None:intergenic
AAGTTTAACATACAGCTAAG+AGG 0.569831 5_1:-35591493 None:intergenic
GGAGGAGGCGGTCCACCTGG+TGG 0.571229 5_1:-35591269 None:intergenic
GCGCGCTGATAGTCTTCCTG+AGG 0.571719 5_1:-35590289 None:intergenic
TGAAGACCTGTCGAAGCAAG+TGG 0.572018 5_1:+35590167 Msa0729120:CDS
ACCCCTCAAGCCCCTCAAGT+TGG 0.572221 5_1:+35593219 Msa0729120:CDS
GCAGAGTGAAATGGTTGCAA+AGG 0.573056 5_1:+35590110 Msa0729120:intron
CGGGTAACACATCTGATGCT+AGG 0.574445 5_1:+35591432 Msa0729120:CDS
CAGGTCTTCAATATCTGAGA+AGG 0.575182 5_1:-35591686 None:intergenic
TTTCTTCTGTACAACTAGCA+AGG 0.576094 5_1:+35592709 Msa0729120:CDS
TGAAGAAAATAACGATGAGA+AGG 0.577311 5_1:+35588942 Msa0729120:CDS
TTATGGCGATCTTTATACGC+AGG 0.577520 5_1:-35590855 None:intergenic
CTTATCATCAAGCTTTCAAG+CGG 0.578195 5_1:-35590639 None:intergenic
TGAGGCCACAGAACAAGAGA+AGG 0.579721 5_1:+35588654 Msa0729120:CDS
AGCGACCTTCTCTTGTTCTG+TGG 0.581850 5_1:-35588659 None:intergenic
TCAAATGATCAATCTGAGGA+TGG 0.582360 5_1:+35591050 Msa0729120:CDS
CCACCACCTGATGGTTTAGG+AGG 0.582529 5_1:-35591152 None:intergenic
CCGGATCGGAACGAGGTCAA+GGG 0.583503 5_1:+35590376 Msa0729120:CDS
AATCACCACCTTTGGTCAAG+GGG 0.583931 5_1:+35590683 Msa0729120:CDS
GGACCTCCTCCTCCACCAGG+TGG 0.585473 5_1:+35591257 Msa0729120:CDS
TAGATCACTCTCCCTAGCCA+TGG 0.585978 5_1:-35590883 None:intergenic
GGTCCACCTGGTGGACGAGG+AGG 0.586202 5_1:-35591239 None:intergenic
GTCATCAGTTGATGCGTCTG+TGG 0.587342 5_1:+35590821 Msa0729120:CDS
GAATGAATTATACAGCTGAA+AGG 0.587891 5_1:-35593336 None:intergenic
AGGTAAAGCAGATGCACTAA+GGG 0.590443 5_1:+35592005 Msa0729120:CDS
ACTCCTAATACTGCTAGTGC+TGG 0.594001 5_1:+35590732 Msa0729120:CDS
CCTCCACCACCTCTTCCAAG+AGG 0.596580 5_1:+35591287 Msa0729120:CDS
GTCTTCAATATCTGAGAAGG+AGG 0.596746 5_1:-35591683 None:intergenic
AGAGAGTTCTTGATTCTGCA+AGG 0.596913 5_1:+35592795 Msa0729120:CDS
GGAAGAAGAGGAGAAAGAGG+AGG 0.597529 5_1:+35588813 Msa0729120:CDS
AGAATCAAGAACTCTCTAGC+TGG 0.597894 5_1:-35592789 None:intergenic
TGCGAAGAGAGATCTTGAGT+TGG 0.598167 5_1:+35589230 Msa0729120:CDS
CATTGAGAAAAGGCCTACTC+GGG 0.598950 5_1:+35591118 Msa0729120:CDS
TGATAAAATTCGACTAACTG+TGG 0.601025 5_1:-35591353 None:intergenic
TGCTGCCGAATCTAGAGTTG+CGG 0.601472 5_1:+35589500 Msa0729120:CDS
GACCTGTCGAAGCAAGTGGA+AGG 0.601916 5_1:+35590171 Msa0729120:CDS
TCAGCTAGTGAAGGAATTGG+AGG 0.602487 5_1:+35589020 Msa0729120:CDS
TAAAGCAGATGCACTAAGGG+AGG 0.603377 5_1:+35592008 Msa0729120:CDS
CGCGCTGATAGTCTTCCTGA+GGG 0.603466 5_1:-35590288 None:intergenic
TAGTGAAGGAATTGGAGGAA+AGG 0.604260 5_1:+35589025 Msa0729120:CDS
GAGAAACACATGCACACACA+AGG 0.606533 5_1:-35588270 None:intergenic
AGATCGCCATAAATTGGCCA+TGG 0.608376 5_1:+35590866 Msa0729120:CDS
GATGTTAGAATATGCCGGAT+CGG 0.609797 5_1:+35590362 Msa0729120:CDS
TATGGCGATCTTTATACGCA+GGG 0.609835 5_1:-35590854 None:intergenic
CCTCCTAAACCATCAGGTGG+TGG 0.610139 5_1:+35591152 Msa0729120:CDS
CTTCAACAGTGATGAAAGCA+GGG 0.611532 5_1:-35588325 None:intergenic
CAGCTGATGTTAGAATATGC+CGG 0.612494 5_1:+35590357 Msa0729120:CDS
GAATATGCCGGATCGGAACG+AGG 0.616158 5_1:+35590369 Msa0729120:CDS
GGAGGAGGAGGTCCACCTGG+TGG 0.616417 5_1:-35591248 None:intergenic
CCTCCTCCTCGTCCACCAGG+TGG 0.621777 5_1:+35591236 Msa0729120:CDS
GTCTAAAGATCGTCAAGATG+AGG 0.622394 5_1:+35588636 Msa0729120:CDS
CGGATCGGAACGAGGTCAAG+GGG 0.623381 5_1:+35590377 Msa0729120:CDS
TTCATCTAGCCAGTTCACAA+AGG 0.630833 5_1:-35591713 None:intergenic
GGAGCAGGAATCAGACATTG+TGG 0.630928 5_1:+35589092 Msa0729120:CDS
CTAACAGAACCACCACCTGA+TGG 0.633052 5_1:-35591161 None:intergenic
CTACAAGTGAAAGAAGAGGC+GGG 0.634825 5_1:+35589348 Msa0729120:CDS
ACAAAGACAGATGCAGCTTG+AGG 0.637837 5_1:+35589275 Msa0729120:CDS
ATCCAGAAATTGAAGAAATG+GGG 0.638544 5_1:+35590519 Msa0729120:CDS
ACGATTGCGTCAGCTAGTGA+AGG 0.639024 5_1:+35589011 Msa0729120:CDS
TAAAGGCATGCATACCAGGA+AGG 0.640747 5_1:-35591743 None:intergenic
TAGCCCGAAATCACAAGCGA+AGG 0.642342 5_1:+35590329 Msa0729120:CDS
AGATTCTGGAGTTGTAGGCA+AGG 0.644734 5_1:+35592394 Msa0729120:CDS
AATTACGAACCTGATGAACA+CGG 0.646865 5_1:-35592833 None:intergenic
AAAGGCCTACTCGGGTACCA+AGG 0.646961 5_1:+35591126 Msa0729120:CDS
AGGCCTATCAAAAGGAGCAG+CGG 0.652768 5_1:+35591307 Msa0729120:CDS
AATGTTGGAAATTCAAAACC+AGG 0.654067 5_1:+35588508 Msa0729120:CDS
TCTACAAGTGAAAGAAGAGG+CGG 0.656081 5_1:+35589347 Msa0729120:CDS
GTATGAGCTAAAGAATCACC+AGG 0.658793 5_1:+35590263 Msa0729120:CDS
ATATATGCATAAATATTCAG+TGG 0.660253 5_1:-35588202 None:intergenic
TGGTCTACAAGTGAAAGAAG+AGG 0.663730 5_1:+35589344 Msa0729120:CDS
AGTATGAGTGTTAAATCTAG+GGG 0.665333 5_1:+35590615 Msa0729120:CDS
CAGACATTGTGGAGTTACAA+CGG 0.666939 5_1:+35589103 Msa0729120:CDS
ATTCGACTAACTGTGGAGCA+CGG 0.667267 5_1:-35591346 None:intergenic
GGTTGCAAAGGCAAAAGAGG+AGG 0.667693 5_1:+35590122 Msa0729120:CDS
TGAAATACTAAGATGCTAAG+CGG 0.672534 5_1:-35593517 None:intergenic
ACGGCAGCTGAAAATTAAGA+CGG 0.676456 5_1:+35589122 Msa0729120:CDS
TGATGATAAAGCCAATTGTG+TGG 0.678932 5_1:+35588173 Msa0729120:five_prime_UTR
TAGTTCAAATGATCAATCTG+AGG 0.680104 5_1:+35591046 Msa0729120:CDS
CAGCAGCCACCAATAACTAG+AGG 0.681077 5_1:-35588118 None:intergenic
GCAGCTGAAAATTAAGACGG+TGG 0.682047 5_1:+35589125 Msa0729120:CDS
CCACCTCCTAAACCATCAGG+TGG 0.688030 5_1:+35591149 Msa0729120:CDS
GAGTGATCTAAAAGAAAAGG+CGG 0.689350 5_1:+35590896 Msa0729120:CDS
AGTTAAAACTAACCAGCTAG+GGG 0.689499 5_1:-35588001 None:intergenic
AACATGCATTGACCCAACGA+AGG 0.691991 5_1:-35590236 None:intergenic
ATATACAGAAGCAAATACCA+AGG 0.710861 5_1:-35593308 None:intergenic
GAGTTTGGGATCATCGACGA+AGG 0.715055 5_1:-35592079 None:intergenic
AAAGCTGATGTAGAAACACA+AGG 0.721363 5_1:+35591622 Msa0729120:CDS
GGAGCTCTCCAATATGACAG+AGG 0.741862 5_1:+35589521 Msa0729120:CDS
ATCAGAAAGATAGATCATGG+AGG 0.770420 5_1:+35593565 Msa0729120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTATTTATAT+TGG + chr5_1:35588551-35588570 Msa0729120:intron 0.0%
!!! TATTTTTTTATTTATATTGG+TGG + chr5_1:35588554-35588573 Msa0729120:intron 10.0%
!! TTTAATGTTAGAAATAAATT+AGG + chr5_1:35588758-35588777 Msa0729120:intron 10.0%
!!! AAATATTTATATCAAAGTTT+TGG + chr5_1:35589654-35589673 Msa0729120:intron 10.0%
!!! TTTTATTATTTTTCTCATTT+TGG + chr5_1:35591524-35591543 Msa0729120:intron 10.0%
!! TATTTATACCATAATATAAA+GGG - chr5_1:35591895-35591914 None:intergenic 10.0%
!! TTTCTTTAAATGATATTTGA+AGG + chr5_1:35588382-35588401 Msa0729120:five_prime_UTR 15.0%
!! TATAGATATGTATCTTTAAA+TGG + chr5_1:35590049-35590068 Msa0729120:intron 15.0%
!! ATAGATATGTATCTTTAAAT+GGG + chr5_1:35590050-35590069 Msa0729120:intron 15.0%
!! GAGAAAAATAATAAAATAGA+TGG - chr5_1:35591520-35591539 None:intergenic 15.0%
!! GTATTTATACCATAATATAA+AGG - chr5_1:35591896-35591915 None:intergenic 15.0%
!! AAGTAAAATGATAAATACTA+TGG - chr5_1:35592174-35592193 None:intergenic 15.0%
!!! AACATATATTTTGTATATAC+TGG - chr5_1:35592591-35592610 None:intergenic 15.0%
!! AATTTCACATCTATATTTAT+AGG - chr5_1:35593591-35593610 None:intergenic 15.0%
!! ATATATGCATAAATATTCAG+TGG - chr5_1:35588205-35588224 None:intergenic 20.0%
!! GTTAGAAATAAATTAGGTAA+AGG + chr5_1:35588764-35588783 Msa0729120:intron 20.0%
!!! AAAGTTGTTTAATTTTTGCA+GGG + chr5_1:35588787-35588806 Msa0729120:intron 20.0%
!! AATTCGAATAGATTTACTAA+AGG - chr5_1:35589923-35589942 None:intergenic 20.0%
!!! TTTATTTTAAAGCTTTGTCT+TGG + chr5_1:35590084-35590103 Msa0729120:intron 20.0%
!!! TTTATTTTAGAAAGTTTAGG+TGG - chr5_1:35591005-35591024 None:intergenic 20.0%
!!! ACCTAAACTTTCTAAAATAA+AGG + chr5_1:35591004-35591023 Msa0729120:CDS 20.0%
!!! TCCTTTATTTTAGAAAGTTT+AGG - chr5_1:35591008-35591027 None:intergenic 20.0%
!! TTTATCAATCATTGATGAAA+CGG + chr5_1:35591369-35591388 Msa0729120:CDS 20.0%
!!! TTCATTATTAGTTTCTTCAA+CGG + chr5_1:35591412-35591431 Msa0729120:CDS 20.0%
!! TCTCATTAAAATTTCAAACT+TGG + chr5_1:35591865-35591884 Msa0729120:intron 20.0%
!! TTGATTTCCTATGAAATATA+AGG + chr5_1:35591942-35591961 Msa0729120:intron 20.0%
!! AAAATGATAAATACTATGGT+AGG - chr5_1:35592170-35592189 None:intergenic 20.0%
!! AAAAATAGATACACAAAACT+TGG + chr5_1:35592519-35592538 Msa0729120:intron 20.0%
!! CATAAAAGAAATAACAAAAG+TGG - chr5_1:35592863-35592882 None:intergenic 20.0%
!! AGTTCAATGAAATAAGAAAA+AGG + chr5_1:35592904-35592923 Msa0729120:intron 20.0%
!! GTTCAATGAAATAAGAAAAA+GGG + chr5_1:35592905-35592924 Msa0729120:intron 20.0%
!! TTCAATGAAATAAGAAAAAG+GGG + chr5_1:35592906-35592925 Msa0729120:intron 20.0%
!!! TTTTTTCTTTTCTTTTTCCT+TGG + chr5_1:35593291-35593310 Msa0729120:three_prime_UTR 20.0%
!! CAATCCTTTTTGTTCATTTT+TGG + chr5_1:35588095-35588114 Msa0729120:five_prime_UTR 25.0%
! AACTTAGTAAAAGCTATGTT+AGG - chr5_1:35588237-35588256 None:intergenic 25.0%
!! TTGAAGGAATAATCAGTTTT+GGG + chr5_1:35588342-35588361 Msa0729120:five_prime_UTR 25.0%
!!! AATAATCAGTTTTGGGAAAT+GGG + chr5_1:35588349-35588368 Msa0729120:five_prime_UTR 25.0%
! ATTTGAAGGAATGCATAATT+TGG + chr5_1:35588396-35588415 Msa0729120:five_prime_UTR 25.0%
!! TTACAGATGATTCTTTTGAA+AGG + chr5_1:35588686-35588705 Msa0729120:CDS 25.0%
!!! GAAAGTTGTTTAATTTTTGC+AGG + chr5_1:35588786-35588805 Msa0729120:intron 25.0%
!!! AAGTTGTTTAATTTTTGCAG+GGG + chr5_1:35588788-35588807 Msa0729120:intron 25.0%
! CAAAGTTTATGAAATTGAGA+TGG + chr5_1:35588966-35588985 Msa0729120:CDS 25.0%
! TTTCAATTTCTTGTCAATCT+CGG - chr5_1:35589388-35589407 None:intergenic 25.0%
! CAGTTTATTGTCTAAACAAA+GGG - chr5_1:35589696-35589715 None:intergenic 25.0%
! TCAGTTTATTGTCTAAACAA+AGG - chr5_1:35589697-35589716 None:intergenic 25.0%
! TTTCTAAATTGTCATATGCT+TGG - chr5_1:35589897-35589916 None:intergenic 25.0%
! TAATCCAGAAATTGAAGAAA+TGG + chr5_1:35590517-35590536 Msa0729120:CDS 25.0%
! AATCCAGAAATTGAAGAAAT+GGG + chr5_1:35590518-35590537 Msa0729120:CDS 25.0%
! TTATCAATCATTGATGAAAC+GGG + chr5_1:35591370-35591389 Msa0729120:CDS 25.0%
!! TCATTATTAGTTTCTTCAAC+GGG + chr5_1:35591413-35591432 Msa0729120:CDS 25.0%
! CATTTGTGAAACATGTATAT+AGG + chr5_1:35591597-35591616 Msa0729120:intron 25.0%
!! CTAAGCATGAAATAATTTTG+AGG - chr5_1:35591802-35591821 None:intergenic 25.0%
! TTAGTGTAGATTATATGAGA+AGG + chr5_1:35591818-35591837 Msa0729120:intron 25.0%
!!! AATTTTAATGAGAAGAACGA+AGG - chr5_1:35591858-35591877 None:intergenic 25.0%
! TCATCAACCTTATATTTCAT+AGG - chr5_1:35591952-35591971 None:intergenic 25.0%
! ATATCAAGATCTGATGAAAT+TGG + chr5_1:35592041-35592060 Msa0729120:CDS 25.0%
!! CATTTTACTTACCAAGAAAA+TGG + chr5_1:35592184-35592203 Msa0729120:intron 25.0%
! CATGACTTAATATACTGTAT+TGG + chr5_1:35592265-35592284 Msa0729120:intron 25.0%
! TTAACCAATAGAAATACCAT+TGG + chr5_1:35592430-35592449 Msa0729120:intron 25.0%
!! AATGTACATTTGTAATGGAA+AGG - chr5_1:35593009-35593028 None:intergenic 25.0%
! GTTCAAATGTACATTTGTAA+TGG - chr5_1:35593014-35593033 None:intergenic 25.0%
! AATGAATTATACAGCTGAAA+GGG - chr5_1:35593338-35593357 None:intergenic 25.0%
! AGTAGCATTCACAATATAAT+CGG - chr5_1:35593411-35593430 None:intergenic 25.0%
! CTAAGAAAACATAATCAAGT+AGG - chr5_1:35593459-35593478 None:intergenic 25.0%
! TTTATCAGAAAGATAGATCA+TGG + chr5_1:35593562-35593581 Msa0729120:three_prime_UTR 25.0%
TGATGAAACAGAATCCATTT+GGG - chr5_1:35588305-35588324 None:intergenic 30.0%
! GTTGAAGGAATAATCAGTTT+TGG + chr5_1:35588341-35588360 Msa0729120:five_prime_UTR 30.0%
!!! GAATAATCAGTTTTGGGAAA+TGG + chr5_1:35588348-35588367 Msa0729120:five_prime_UTR 30.0%
TACTATCATGAAGCTTCTTT+AGG - chr5_1:35588434-35588453 None:intergenic 30.0%
AAAGAAGCTTCATGATAGTA+AGG + chr5_1:35588434-35588453 Msa0729120:exon 30.0%
AATGTTGGAAATTCAAAACC+AGG + chr5_1:35588508-35588527 Msa0729120:CDS 30.0%
!! AGTTGTTTAATTTTTGCAGG+GGG + chr5_1:35588789-35588808 Msa0729120:intron 30.0%
GATAAAAGGTCTTCAAATTC+TGG - chr5_1:35588895-35588914 None:intergenic 30.0%
! GAATTTGAAGACCTTTTATC+TGG + chr5_1:35588895-35588914 Msa0729120:CDS 30.0%
TGAAGAAAATAACGATGAGA+AGG + chr5_1:35588942-35588961 Msa0729120:CDS 30.0%
GTTGTTTAAGCAACAAAAGT+TGG - chr5_1:35589317-35589336 None:intergenic 30.0%
TTGCTTAAACAACAAGTTTC+TGG + chr5_1:35589324-35589343 Msa0729120:CDS 30.0%
TTCATTATCGAGTTTGAACA+AGG + chr5_1:35589571-35589590 Msa0729120:intron 30.0%
! TTTCTAAGTTTTGCATCACT+TGG + chr5_1:35589625-35589644 Msa0729120:intron 30.0%
GTATATTCAACGAAGTTGTT+TGG - chr5_1:35589762-35589781 None:intergenic 30.0%
AAACACTAAAGACACTTTGT+AGG - chr5_1:35589812-35589831 None:intergenic 30.0%
AATATACCAGCATCACAAAA+TGG - chr5_1:35589854-35589873 None:intergenic 30.0%
ATCCAGAAATTGAAGAAATG+GGG + chr5_1:35590519-35590538 Msa0729120:CDS 30.0%
AAGAACACTAGAATCATCTT+TGG - chr5_1:35590550-35590569 None:intergenic 30.0%
TGAGTATGAGTGTTAAATCT+AGG + chr5_1:35590613-35590632 Msa0729120:CDS 30.0%
GAGTATGAGTGTTAAATCTA+GGG + chr5_1:35590614-35590633 Msa0729120:CDS 30.0%
AGTATGAGTGTTAAATCTAG+GGG + chr5_1:35590615-35590634 Msa0729120:CDS 30.0%
ATCAAGTGACTCACTAAATT+CGG + chr5_1:35590770-35590789 Msa0729120:CDS 30.0%
GTATAAAGATCGCCATAAAT+TGG + chr5_1:35590860-35590879 Msa0729120:CDS 30.0%
TTAGGTGGCAAAGATATATT+AGG - chr5_1:35590990-35591009 None:intergenic 30.0%
TTTGAACTAGCATGAACAAT+TGG - chr5_1:35591035-35591054 None:intergenic 30.0%
TAGTTCAAATGATCAATCTG+AGG + chr5_1:35591046-35591065 Msa0729120:CDS 30.0%
TGATAAAATTCGACTAACTG+TGG - chr5_1:35591356-35591375 None:intergenic 30.0%
AAGTTTAACATACAGCTAAG+AGG - chr5_1:35591496-35591515 None:intergenic 30.0%
! TCTTAAGTCATGACACATTT+TGG + chr5_1:35591551-35591570 Msa0729120:intron 30.0%
TTGGAGTTCCCTTTATATTA+TGG + chr5_1:35591884-35591903 Msa0729120:intron 30.0%
TCATAGGAAATCAAATGAGA+TGG - chr5_1:35591936-35591955 None:intergenic 30.0%
GATAAATACTATGGTAGGAA+GGG - chr5_1:35592165-35592184 None:intergenic 30.0%
TGATAAATACTATGGTAGGA+AGG - chr5_1:35592166-35592185 None:intergenic 30.0%
TTACTTACCAAGAAAATGGA+TGG + chr5_1:35592188-35592207 Msa0729120:intron 30.0%
ATTGTTACGAACAAGAGATA+TGG + chr5_1:35592325-35592344 Msa0729120:CDS 30.0%
! AATTTGGAATCCCAATAAAC+TGG + chr5_1:35592366-35592385 Msa0729120:CDS 30.0%
AATCTTGTAGCCAGTTTATT+GGG - chr5_1:35592379-35592398 None:intergenic 30.0%
! CTAACCAATGGTATTTCTAT+TGG - chr5_1:35592437-35592456 None:intergenic 30.0%
! ATACTGGTTATTCTAACCAA+TGG - chr5_1:35592449-35592468 None:intergenic 30.0%
! TTTTCCTCTCTTATGGAATA+TGG - chr5_1:35592479-35592498 None:intergenic 30.0%
!!! TCAAGTTTTTTCCTCTCTTA+TGG - chr5_1:35592486-35592505 None:intergenic 30.0%
GCTTATTATTAATCACATGC+TGG + chr5_1:35592658-35592677 Msa0729120:intron 30.0%
! TTCTTGTTTGTGAGAACAAT+TGG - chr5_1:35593045-35593064 None:intergenic 30.0%
!! TGAAGGCTTTTGAAGATTTA+AGG + chr5_1:35593184-35593203 Msa0729120:CDS 30.0%
TGATGAGTATTCTATGTTTC+TGG - chr5_1:35593264-35593283 None:intergenic 30.0%
ATATACAGAAGCAAATACCA+AGG - chr5_1:35593311-35593330 None:intergenic 30.0%
GAATGAATTATACAGCTGAA+AGG - chr5_1:35593339-35593358 None:intergenic 30.0%
TGAAATACTAAGATGCTAAG+CGG - chr5_1:35593520-35593539 None:intergenic 30.0%
AGTTAAAACTAACCAGCTAG+GGG - chr5_1:35588004-35588023 None:intergenic 35.0%
CAGTTAAAACTAACCAGCTA+GGG - chr5_1:35588005-35588024 None:intergenic 35.0%
ACAGTTAAAACTAACCAGCT+AGG - chr5_1:35588006-35588025 None:intergenic 35.0%
GAGGCCAAAAATGAACAAAA+AGG - chr5_1:35588102-35588121 None:intergenic 35.0%
!!! CATTTTTGGCCTCTAGTTAT+TGG + chr5_1:35588109-35588128 Msa0729120:five_prime_UTR 35.0%
TGATGATAAAGCCAATTGTG+TGG + chr5_1:35588173-35588192 Msa0729120:five_prime_UTR 35.0%
! AGTGGTATTTTCCACACAAT+TGG - chr5_1:35588187-35588206 None:intergenic 35.0%
GCACACACAAGGAAAAAAAA+AGG - chr5_1:35588262-35588281 None:intergenic 35.0%
! TTCTCTTTTTCTGTCCCAAA+TGG + chr5_1:35588288-35588307 Msa0729120:five_prime_UTR 35.0%
GTGATGAAACAGAATCCATT+TGG - chr5_1:35588306-35588325 None:intergenic 35.0%
AGCTTCATGATAGTAAGGTT+AGG + chr5_1:35588439-35588458 Msa0729120:exon 35.0%
AAATTCTAGCAACAAGTACC+TGG - chr5_1:35588529-35588548 None:intergenic 35.0%
! AAGCAACTTCGTCTACATTT+TGG + chr5_1:35588592-35588611 Msa0729120:intron 35.0%
ACTCAATCTCTCCAGATAAA+AGG - chr5_1:35588909-35588928 None:intergenic 35.0%
GAGATTGAGTTATCATTTCC+TGG + chr5_1:35588919-35588938 Msa0729120:CDS 35.0%
!! TCATCGTTATTTTCTTCACC+AGG - chr5_1:35588940-35588959 None:intergenic 35.0%
TACCATTAATTCTCTGCAAG+CGG + chr5_1:35589167-35589186 Msa0729120:CDS 35.0%
CTTCAAGAAGAACTCACAAA+TGG + chr5_1:35589201-35589220 Msa0729120:CDS 35.0%
GTTGGCTAGAAACAAGATAA+AGG + chr5_1:35589248-35589267 Msa0729120:CDS 35.0%
!!! ACAAAAGTTGGCCTTTTGTT+TGG - chr5_1:35589305-35589324 None:intergenic 35.0%
GAAAGCTGTGAATGATTTAG+AGG + chr5_1:35589404-35589423 Msa0729120:CDS 35.0%
! CAAAGTGTCTTTAGTGTTTC+AGG + chr5_1:35589813-35589832 Msa0729120:intron 35.0%
! CATAACTTTTGACCACTTCT+CGG - chr5_1:35589994-35590013 None:intergenic 35.0%
TGGAAGGACTTCAAATGAAT+CGG + chr5_1:35590187-35590206 Msa0729120:CDS 35.0%
TTGTCAAAATCTTCACTTCC+TGG - chr5_1:35590441-35590460 None:intergenic 35.0%
TACCCCATTTCTTCAATTTC+TGG - chr5_1:35590524-35590543 None:intergenic 35.0%
! TCACCATCAAGATCTTTTTC+AGG + chr5_1:35590573-35590592 Msa0729120:CDS 35.0%
! ACACTCATACTCATCCTTTT+TGG - chr5_1:35590606-35590625 None:intergenic 35.0%
CTTATCATCAAGCTTTCAAG+CGG - chr5_1:35590642-35590661 None:intergenic 35.0%
GGAGAGTGATCTAAAAGAAA+AGG + chr5_1:35590893-35590912 Msa0729120:CDS 35.0%
GAGTGATCTAAAAGAAAAGG+CGG + chr5_1:35590896-35590915 Msa0729120:CDS 35.0%
AAAGCAAGAGTTCAGAAGTT+TGG + chr5_1:35590921-35590940 Msa0729120:CDS 35.0%
AAGCAAGAGTTCAGAAGTTT+GGG + chr5_1:35590922-35590941 Msa0729120:CDS 35.0%
TCAAATGATCAATCTGAGGA+TGG + chr5_1:35591050-35591069 Msa0729120:CDS 35.0%
GGCAAACTTTATCTTGCTAA+TGG - chr5_1:35591096-35591115 None:intergenic 35.0%
ACAAACTCAAATCCTGCAAA+TGG + chr5_1:35591185-35591204 Msa0729120:CDS 35.0%
AAAGCTGATGTAGAAACACA+AGG + chr5_1:35591622-35591641 Msa0729120:CDS 35.0%
! AGGTGATTTTGTCACATCAT+TGG + chr5_1:35591642-35591661 Msa0729120:CDS 35.0%
TGATGAGAATTGACACCTAA+AGG - chr5_1:35591763-35591782 None:intergenic 35.0%
! ATATGAGAAGGCATGAAACT+TGG + chr5_1:35591830-35591849 Msa0729120:intron 35.0%
! TATCAAGCCATCCATTTTCT+TGG - chr5_1:35592198-35592217 None:intergenic 35.0%
! CAAGAGATATGGCTATTTCA+CGG + chr5_1:35592336-35592355 Msa0729120:CDS 35.0%
ATTTCACGGTACAGAGAATT+TGG + chr5_1:35592350-35592369 Msa0729120:CDS 35.0%
GAATCTTGTAGCCAGTTTAT+TGG - chr5_1:35592380-35592399 None:intergenic 35.0%
ATAAACTGGCTACAAGATTC+TGG + chr5_1:35592380-35592399 Msa0729120:CDS 35.0%
ATGACCATATTCCATAAGAG+AGG + chr5_1:35592472-35592491 Msa0729120:intron 35.0%
TTTCTTCTGTACAACTAGCA+AGG + chr5_1:35592709-35592728 Msa0729120:CDS 35.0%
TCTGAACTTGATGCATTATC+TGG + chr5_1:35592753-35592772 Msa0729120:CDS 35.0%
AATTACGAACCTGATGAACA+CGG - chr5_1:35592836-35592855 None:intergenic 35.0%
GTTCATCAGGTTCGTAATTT+AGG + chr5_1:35592837-35592856 Msa0729120:intron 35.0%
!! CCAGTATTAGAGTGTTGTAT+TGG - chr5_1:35593114-35593133 None:intergenic 35.0%
CCAATACAACACTCTAATAC+TGG + chr5_1:35593111-35593130 Msa0729120:intron 35.0%
! ATACTGGTGCAAAACTCTTT+TGG + chr5_1:35593127-35593146 Msa0729120:intron 35.0%
TATCTTCTTCACCAACTTGA+GGG - chr5_1:35593233-35593252 None:intergenic 35.0%
CAGCTGTATAATTCATTCTG+CGG + chr5_1:35593341-35593360 Msa0729120:three_prime_UTR 35.0%
ATCAGAAAGATAGATCATGG+AGG + chr5_1:35593565-35593584 Msa0729120:three_prime_UTR 35.0%
CTAGGGGAACAAGATTGATA+AGG - chr5_1:35587988-35588007 None:intergenic 40.0%
! TTTTGGCCTCTAGTTATTGG+TGG + chr5_1:35588112-35588131 Msa0729120:five_prime_UTR 40.0%
CTTCAACAGTGATGAAAGCA+GGG - chr5_1:35588328-35588347 None:intergenic 40.0%
ACTGTTAAGCAGCTCAATGT+TGG + chr5_1:35588493-35588512 Msa0729120:CDS 40.0%
!!! CTACATTTTGGCTCAGAACT+TGG + chr5_1:35588604-35588623 Msa0729120:intron 40.0%
GTCTAAAGATCGTCAAGATG+AGG + chr5_1:35588636-35588655 Msa0729120:CDS 40.0%
!! TGTTTAATTTTTGCAGGGGG+AGG + chr5_1:35588792-35588811 Msa0729120:intron 40.0%
TAGTGAAGGAATTGGAGGAA+AGG + chr5_1:35589025-35589044 Msa0729120:CDS 40.0%
AGTGAAGGAATTGGAGGAAA+GGG + chr5_1:35589026-35589045 Msa0729120:CDS 40.0%
GAAAGGGAAGTGAAACTTGA+AGG + chr5_1:35589042-35589061 Msa0729120:CDS 40.0%
GGAGAATTGCTTGAGTACTA+TGG + chr5_1:35589063-35589082 Msa0729120:CDS 40.0%
GCTTGAGTACTATGGTTTGA+AGG + chr5_1:35589071-35589090 Msa0729120:CDS 40.0%
CAGACATTGTGGAGTTACAA+CGG + chr5_1:35589103-35589122 Msa0729120:CDS 40.0%
ACGGCAGCTGAAAATTAAGA+CGG + chr5_1:35589122-35589141 Msa0729120:CDS 40.0%
CTTGAGGCTAACCAAACAAA+AGG + chr5_1:35589291-35589310 Msa0729120:CDS 40.0%
TGGTCTACAAGTGAAAGAAG+AGG + chr5_1:35589344-35589363 Msa0729120:CDS 40.0%
TCTACAAGTGAAAGAAGAGG+CGG + chr5_1:35589347-35589366 Msa0729120:CDS 40.0%
! TGATTTAGAGGTTGCTGTTG+TGG + chr5_1:35589416-35589435 Msa0729120:CDS 40.0%
!!! GTATTGCCATTTTGTGATGC+TGG + chr5_1:35589845-35589864 Msa0729120:intron 40.0%
GTATACTTTGTTCCGAGAAG+TGG + chr5_1:35589979-35589998 Msa0729120:intron 40.0%
AATGGTTGCAAAGGCAAAAG+AGG + chr5_1:35590119-35590138 Msa0729120:CDS 40.0%
AAGAACTCGTATACCTTCGT+TGG + chr5_1:35590223-35590242 Msa0729120:CDS 40.0%
AGAACTCGTATACCTTCGTT+GGG + chr5_1:35590224-35590243 Msa0729120:CDS 40.0%
GTATGAGCTAAAGAATCACC+AGG + chr5_1:35590263-35590282 Msa0729120:CDS 40.0%
TTTGCCTTCGCTTGTGATTT+CGG - chr5_1:35590336-35590355 None:intergenic 40.0%
CAGCTGATGTTAGAATATGC+CGG + chr5_1:35590357-35590376 Msa0729120:CDS 40.0%
GATGTTAGAATATGCCGGAT+CGG + chr5_1:35590362-35590381 Msa0729120:CDS 40.0%
CTGCCTGAAAAAGATCTTGA+TGG - chr5_1:35590579-35590598 None:intergenic 40.0%
TTTCAGGCAGTTCTCCAAAA+AGG + chr5_1:35590589-35590608 Msa0729120:CDS 40.0%
! CGCTTGAAAGCTTGATGATA+AGG + chr5_1:35590640-35590659 Msa0729120:CDS 40.0%
CTAGCAGTATTAGGAGTTTC+AGG - chr5_1:35590729-35590748 None:intergenic 40.0%
! CTGATGACTTGGACATCAAA+TGG - chr5_1:35590809-35590828 None:intergenic 40.0%
TATGGCGATCTTTATACGCA+GGG - chr5_1:35590857-35590876 None:intergenic 40.0%
TTATGGCGATCTTTATACGC+AGG - chr5_1:35590858-35590877 None:intergenic 40.0%
AGGTCTATCTCTTTCGATCT+TGG - chr5_1:35590970-35590989 None:intergenic 40.0%
AGTTTGCCGACATTGAGAAA+AGG + chr5_1:35591108-35591127 Msa0729120:CDS 40.0%
! AGTAGGCCTTTTCTCAATGT+CGG - chr5_1:35591117-35591136 None:intergenic 40.0%
ACATTGAGAAAAGGCCTACT+CGG + chr5_1:35591117-35591136 Msa0729120:CDS 40.0%
GATGCTAGGAACAACATGAT+TGG + chr5_1:35591446-35591465 Msa0729120:CDS 40.0%
GTCTTCAATATCTGAGAAGG+AGG - chr5_1:35591686-35591705 None:intergenic 40.0%
CAGGTCTTCAATATCTGAGA+AGG - chr5_1:35591689-35591708 None:intergenic 40.0%
CTTCTCAGATATTGAAGACC+TGG + chr5_1:35591687-35591706 Msa0729120:CDS 40.0%
TTCATCTAGCCAGTTCACAA+AGG - chr5_1:35591716-35591735 None:intergenic 40.0%
AGATGAAGAACTTTCCTTCC+TGG + chr5_1:35591729-35591748 Msa0729120:CDS 40.0%
! CTGTCTTGAAGCACTTTGAT+TGG + chr5_1:35591977-35591996 Msa0729120:CDS 40.0%
AAGGTAAAGCAGATGCACTA+AGG + chr5_1:35592004-35592023 Msa0729120:CDS 40.0%
AGGTAAAGCAGATGCACTAA+GGG + chr5_1:35592005-35592024 Msa0729120:CDS 40.0%
GCAACTTCACATGAGAGTTT+GGG - chr5_1:35592096-35592115 None:intergenic 40.0%
AGCAACTTCACATGAGAGTT+TGG - chr5_1:35592097-35592116 None:intergenic 40.0%
! GGTTTGAAACATTTGCAGAG+TGG + chr5_1:35592286-35592305 Msa0729120:intron 40.0%
!! CTACAAGATTCTGGAGTTGT+AGG + chr5_1:35592389-35592408 Msa0729120:CDS 40.0%
GGAATATGGTCATAGCATAC+TGG - chr5_1:35592465-35592484 None:intergenic 40.0%
AGAATCAAGAACTCTCTAGC+TGG - chr5_1:35592792-35592811 None:intergenic 40.0%
AGAGAGTTCTTGATTCTGCA+AGG + chr5_1:35592795-35592814 Msa0729120:CDS 40.0%
! TTTTGCTTTCCGTGTTCATC+AGG + chr5_1:35592824-35592843 Msa0729120:CDS 40.0%
TAAGAAAAAGGGGTTGACTG+AGG + chr5_1:35592916-35592935 Msa0729120:intron 40.0%
!!! CTCTTTTGGTTTCAGTTTGC+AGG + chr5_1:35593141-35593160 Msa0729120:intron 40.0%
!!! TTTTGGTTTCAGTTTGCAGG+AGG + chr5_1:35593144-35593163 Msa0729120:intron 40.0%
ATCTTCTTCACCAACTTGAG+GGG - chr5_1:35593232-35593251 None:intergenic 40.0%
CTATCTTCTTCACCAACTTG+AGG - chr5_1:35593234-35593253 None:intergenic 40.0%
! GTAGGTAGTGATGATGATCT+TGG - chr5_1:35593441-35593460 None:intergenic 40.0%
ATCAATCTTGTTCCCCTAGC+TGG + chr5_1:35587989-35588008 Msa0729120:five_prime_UTR 45.0%
GAGAAACACATGCACACACA+AGG - chr5_1:35588273-35588292 None:intergenic 45.0%
CCTTCAACAGTGATGAAAGC+AGG - chr5_1:35588329-35588348 None:intergenic 45.0%
CCTGCTTTCATCACTGTTGA+AGG + chr5_1:35588326-35588345 Msa0729120:five_prime_UTR 45.0%
GACGAAGTTGCTTAGTTCGT+AGG - chr5_1:35588585-35588604 None:intergenic 45.0%
! GCTCAGAACTTGGTGAAGAA+AGG + chr5_1:35588614-35588633 Msa0729120:intron 45.0%
TCAGCTAGTGAAGGAATTGG+AGG + chr5_1:35589020-35589039 Msa0729120:CDS 45.0%
GTACTATGGTTTGAAGGAGC+AGG + chr5_1:35589077-35589096 Msa0729120:CDS 45.0%
GCAGCTGAAAATTAAGACGG+TGG + chr5_1:35589125-35589144 Msa0729120:CDS 45.0%
CTCCGCTTGCAGAGAATTAA+TGG - chr5_1:35589172-35589191 None:intergenic 45.0%
TGCGAAGAGAGATCTTGAGT+TGG + chr5_1:35589230-35589249 Msa0729120:CDS 45.0%
ACAAAGACAGATGCAGCTTG+AGG + chr5_1:35589275-35589294 Msa0729120:CDS 45.0%
CTACAAGTGAAAGAAGAGGC+GGG + chr5_1:35589348-35589367 Msa0729120:CDS 45.0%
! TTGCTGTTGTGGAGCTTAAG+AGG + chr5_1:35589427-35589446 Msa0729120:CDS 45.0%
GAGTCTGACCTCTGTCATAT+TGG - chr5_1:35589532-35589551 None:intergenic 45.0%
TCTTGGACTGCAGAGTGAAA+TGG + chr5_1:35590101-35590120 Msa0729120:intron 45.0%
GCAGAGTGAAATGGTTGCAA+AGG + chr5_1:35590110-35590129 Msa0729120:intron 45.0%
! AACATGCATTGACCCAACGA+AGG - chr5_1:35590239-35590258 None:intergenic 45.0%
GTTGGGTCAATGCATGTTTG+AGG + chr5_1:35590241-35590260 Msa0729120:CDS 45.0%
TTGCCTTCGCTTGTGATTTC+GGG - chr5_1:35590335-35590354 None:intergenic 45.0%
ACTTCCTGGTGAAGAAGGAT+GGG - chr5_1:35590427-35590446 None:intergenic 45.0%
TCTTCACTTCCTGGTGAAGA+AGG - chr5_1:35590432-35590451 None:intergenic 45.0%
GGTGATTGCTACACTATCAC+TGG - chr5_1:35590670-35590689 None:intergenic 45.0%
AGTGTAGCAATCACCACCTT+TGG + chr5_1:35590675-35590694 Msa0729120:CDS 45.0%
CAATCACCACCTTTGGTCAA+GGG + chr5_1:35590682-35590701 Msa0729120:CDS 45.0%
AATCACCACCTTTGGTCAAG+GGG + chr5_1:35590683-35590702 Msa0729120:CDS 45.0%
TTCTTGATCCCCTTGACCAA+AGG - chr5_1:35590694-35590713 None:intergenic 45.0%
ACTCCTAATACTGCTAGTGC+TGG + chr5_1:35590732-35590751 Msa0729120:CDS 45.0%
AGACCAGCACTAGCAGTATT+AGG - chr5_1:35590738-35590757 None:intergenic 45.0%
AGACGCATCAACTGATGACT+TGG - chr5_1:35590820-35590839 None:intergenic 45.0%
AGATCGCCATAAATTGGCCA+TGG + chr5_1:35590866-35590885 Msa0729120:CDS 45.0%
CCATAAATTGGCCATGGCTA+GGG + chr5_1:35590872-35590891 Msa0729120:CDS 45.0%
CATTGAGAAAAGGCCTACTC+GGG + chr5_1:35591118-35591137 Msa0729120:CDS 45.0%
GCAGATGGTATTCCATTTGC+AGG - chr5_1:35591200-35591219 None:intergenic 45.0%
TTTGATAGGCCTCTTGGAAG+AGG - chr5_1:35591299-35591318 None:intergenic 45.0%
CTTCCAAGAGGCCTATCAAA+AGG + chr5_1:35591299-35591318 Msa0729120:CDS 45.0%
ATTCGACTAACTGTGGAGCA+CGG - chr5_1:35591349-35591368 None:intergenic 45.0%
GATGAAACGGGAAGCAAAGA+AGG + chr5_1:35591382-35591401 Msa0729120:CDS 45.0%
! TAAAGGCATGCATACCAGGA+AGG - chr5_1:35591746-35591765 None:intergenic 45.0%
TTCCTGGTATGCATGCCTTT+AGG + chr5_1:35591745-35591764 Msa0729120:intron 45.0%
!! AAGCACTTTGATTGGCCTGA+AGG + chr5_1:35591985-35592004 Msa0729120:CDS 45.0%
AGTGCATCTGCTTTACCTTC+AGG - chr5_1:35592003-35592022 None:intergenic 45.0%
TAAAGCAGATGCACTAAGGG+AGG + chr5_1:35592008-35592027 Msa0729120:CDS 45.0%
ACTATGGTAGGAAGGGAAAG+AGG - chr5_1:35592158-35592177 None:intergenic 45.0%
!! AGATTCTGGAGTTGTAGGCA+AGG + chr5_1:35592394-35592413 Msa0729120:CDS 45.0%
TGCATTATCTGGACCTGAGA+AGG + chr5_1:35592764-35592783 Msa0729120:CDS 45.0%
! CTTTGATGCAGAGAGCATGA+AGG + chr5_1:35593167-35593186 Msa0729120:CDS 45.0%
CAGCAGCCACCAATAACTAG+AGG - chr5_1:35588121-35588140 None:intergenic 50.0%
TGAGGCCACAGAACAAGAGA+AGG + chr5_1:35588654-35588673 Msa0729120:CDS 50.0%
AGCGACCTTCTCTTGTTCTG+TGG - chr5_1:35588662-35588681 None:intergenic 50.0%
GGAGGAAGAAGAGGAGAAAG+AGG + chr5_1:35588810-35588829 Msa0729120:CDS 50.0%
GGAAGAAGAGGAGAAAGAGG+AGG + chr5_1:35588813-35588832 Msa0729120:CDS 50.0%
ACGATTGCGTCAGCTAGTGA+AGG + chr5_1:35589011-35589030 Msa0729120:CDS 50.0%
GCGTCAGCTAGTGAAGGAAT+TGG + chr5_1:35589017-35589036 Msa0729120:CDS 50.0%
GGAGCAGGAATCAGACATTG+TGG + chr5_1:35589092-35589111 Msa0729120:CDS 50.0%
! TGCTGCCGAATCTAGAGTTG+CGG + chr5_1:35589500-35589519 Msa0729120:CDS 50.0%
GAGCTCCGCAACTCTAGATT+CGG - chr5_1:35589508-35589527 None:intergenic 50.0%
GGAGCTCTCCAATATGACAG+AGG + chr5_1:35589521-35589540 Msa0729120:CDS 50.0%
GGTTGCAAAGGCAAAAGAGG+AGG + chr5_1:35590122-35590141 Msa0729120:CDS 50.0%
GGTCTTCATTTGCGTGTCTC+AGG - chr5_1:35590155-35590174 None:intergenic 50.0%
TGAAGACCTGTCGAAGCAAG+TGG + chr5_1:35590167-35590186 Msa0729120:CDS 50.0%
TCGCTTGTGATTTCGGGCTA+AGG - chr5_1:35590329-35590348 None:intergenic 50.0%
TAGCCCGAAATCACAAGCGA+AGG + chr5_1:35590329-35590348 Msa0729120:CDS 50.0%
TTCTCCCATCCTTCTTCACC+AGG + chr5_1:35590420-35590439 Msa0729120:CDS 50.0%
CACTTCCTGGTGAAGAAGGA+TGG - chr5_1:35590428-35590447 None:intergenic 50.0%
GCAATCACCACCTTTGGTCA+AGG + chr5_1:35590681-35590700 Msa0729120:CDS 50.0%
TTGATCCCCTTGACCAAAGG+TGG - chr5_1:35590691-35590710 None:intergenic 50.0%
! GTCATCAGTTGATGCGTCTG+TGG + chr5_1:35590821-35590840 Msa0729120:CDS 50.0%
GCCATAAATTGGCCATGGCT+AGG + chr5_1:35590871-35590890 Msa0729120:CDS 50.0%
CCCTAGCCATGGCCAATTTA+TGG - chr5_1:35590875-35590894 None:intergenic 50.0%
TAGATCACTCTCCCTAGCCA+TGG - chr5_1:35590886-35590905 None:intergenic 50.0%
GAACCACCACCTGATGGTTT+AGG - chr5_1:35591158-35591177 None:intergenic 50.0%
CTAACAGAACCACCACCTGA+TGG - chr5_1:35591164-35591183 None:intergenic 50.0%
! GCTCCTTTTGATAGGCCTCT+TGG - chr5_1:35591305-35591324 None:intergenic 50.0%
AGGCCTATCAAAAGGAGCAG+CGG + chr5_1:35591307-35591326 Msa0729120:CDS 50.0%
! CATCCGCTGCTCCTTTTGAT+AGG - chr5_1:35591313-35591332 None:intergenic 50.0%
CGGGTAACACATCTGATGCT+AGG + chr5_1:35591432-35591451 Msa0729120:CDS 50.0%
ACCTGGTTGCCTTTGTGAAC+TGG + chr5_1:35591704-35591723 Msa0729120:CDS 50.0%
! CACCTAAAGGCATGCATACC+AGG - chr5_1:35591750-35591769 None:intergenic 50.0%
! GAGTTTGGGATCATCGACGA+AGG - chr5_1:35592082-35592101 None:intergenic 50.0%
! TCTCTAGCTGGTTCCTTCTC+AGG - chr5_1:35592780-35592799 None:intergenic 50.0%
TTTGCAGGGGGAGGAAGAAG+AGG + chr5_1:35588801-35588820 Msa0729120:intron 55.0%
GACCTGTCGAAGCAAGTGGA+AGG + chr5_1:35590171-35590190 Msa0729120:CDS 55.0%
GTCCTTCCACTTGCTTCGAC+AGG - chr5_1:35590176-35590195 None:intergenic 55.0%
AAGAATCACCAGGCACCCTC+AGG + chr5_1:35590273-35590292 Msa0729120:CDS 55.0%
!! ATAGTCTTCCTGAGGGTGCC+TGG - chr5_1:35590284-35590303 None:intergenic 55.0%
! CGCGCTGATAGTCTTCCTGA+GGG - chr5_1:35590291-35590310 None:intergenic 55.0%
TCGGGCTAAGGTTCTTGCTG+AGG - chr5_1:35590317-35590336 None:intergenic 55.0%
GAATATGCCGGATCGGAACG+AGG + chr5_1:35590369-35590388 Msa0729120:CDS 55.0%
AAAGGCCTACTCGGGTACCA+AGG + chr5_1:35591126-35591145 Msa0729120:CDS 55.0%
GATGGTTTAGGAGGTGGCCT+TGG - chr5_1:35591146-35591165 None:intergenic 55.0%
AGGCCACCTCCTAAACCATC+AGG + chr5_1:35591146-35591165 Msa0729120:CDS 55.0%
CCACCTGATGGTTTAGGAGG+TGG - chr5_1:35591152-35591171 None:intergenic 55.0%
CCACCTCCTAAACCATCAGG+TGG + chr5_1:35591149-35591168 Msa0729120:CDS 55.0%
CCACCACCTGATGGTTTAGG+AGG - chr5_1:35591155-35591174 None:intergenic 55.0%
CCTCCTAAACCATCAGGTGG+TGG + chr5_1:35591152-35591171 Msa0729120:CDS 55.0%
GGAGGAATGGATGGAGCAGA+TGG - chr5_1:35591215-35591234 None:intergenic 55.0%
GATAGGCCTCTTGGAAGAGG+TGG - chr5_1:35591296-35591315 None:intergenic 55.0%
GCCAGTTCACAAAGGCAACC+AGG - chr5_1:35591708-35591727 None:intergenic 55.0%
ACCAACTTGAGGGGCTTGAG+GGG - chr5_1:35593223-35593242 None:intergenic 55.0%
CACCAACTTGAGGGGCTTGA+GGG - chr5_1:35593224-35593243 None:intergenic 55.0%
TCACCAACTTGAGGGGCTTG+AGG - chr5_1:35593225-35593244 None:intergenic 55.0%
! GCGCGCTGATAGTCTTCCTG+AGG - chr5_1:35590292-35590311 None:intergenic 60.0%
CCCTTGACCTCGTTCCGATC+CGG - chr5_1:35590379-35590398 None:intergenic 60.0%
CCGGATCGGAACGAGGTCAA+GGG + chr5_1:35590376-35590395 Msa0729120:CDS 60.0%
CGGATCGGAACGAGGTCAAG+GGG + chr5_1:35590377-35590396 Msa0729120:CDS 60.0%
GGAGGAGGAGGAGGAATGGA+TGG - chr5_1:35591224-35591243 None:intergenic 60.0%
ACGAGGAGGAGGAGGAGGAA+TGG - chr5_1:35591228-35591247 None:intergenic 60.0%
!! CTTGGAAGAGGTGGTGGAGG+AGG - chr5_1:35591287-35591306 None:intergenic 60.0%
! CCTCTTGGAAGAGGTGGTGG+AGG - chr5_1:35591290-35591309 None:intergenic 60.0%
CCTCCACCACCTCTTCCAAG+AGG + chr5_1:35591287-35591306 Msa0729120:CDS 60.0%
AGGCCTCTTGGAAGAGGTGG+TGG - chr5_1:35591293-35591312 None:intergenic 60.0%
CTTGAGGGGCTTGAGGGGTT+TGG - chr5_1:35593218-35593237 None:intergenic 60.0%
ACCCCTCAAGCCCCTCAAGT+TGG + chr5_1:35593219-35593238 Msa0729120:CDS 60.0%
GCCGGATCGGAACGAGGTCA+AGG + chr5_1:35590375-35590394 Msa0729120:CDS 65.0%
! GGTGGCCTTGGTACCCGAGT+AGG - chr5_1:35591134-35591153 None:intergenic 65.0%
!! GGAAGAGGTGGTGGAGGAGG+CGG - chr5_1:35591284-35591303 None:intergenic 65.0%
GGTGGACGAGGAGGAGGAGG+AGG - chr5_1:35591233-35591252 None:intergenic 70.0%
! CCTGGTGGACGAGGAGGAGG+AGG - chr5_1:35591236-35591255 None:intergenic 70.0%
CCTCCTCCTCCTCGTCCACC+AGG + chr5_1:35591233-35591252 Msa0729120:CDS 70.0%
! CCACCTGGTGGACGAGGAGG+AGG - chr5_1:35591239-35591258 None:intergenic 70.0%
CCTCCTCCTCGTCCACCAGG+TGG + chr5_1:35591236-35591255 Msa0729120:CDS 70.0%
! GGTCCACCTGGTGGACGAGG+AGG - chr5_1:35591242-35591261 None:intergenic 70.0%
! GGAGGTCCACCTGGTGGACG+AGG - chr5_1:35591245-35591264 None:intergenic 70.0%
GGAGGAGGAGGTCCACCTGG+TGG - chr5_1:35591251-35591270 None:intergenic 70.0%
GGTGGAGGAGGAGGTCCACC+TGG - chr5_1:35591254-35591273 None:intergenic 70.0%
GGTGGACCTCCTCCTCCACC+AGG + chr5_1:35591254-35591273 Msa0729120:CDS 70.0%
GGACCTCCTCCTCCACCAGG+TGG + chr5_1:35591257-35591276 Msa0729120:CDS 70.0%
GGTCCACCTGGTGGAGGAGG+AGG - chr5_1:35591263-35591282 None:intergenic 70.0%
GGCGGTCCACCTGGTGGAGG+AGG - chr5_1:35591266-35591285 None:intergenic 75.0%
GGAGGCGGTCCACCTGGTGG+AGG - chr5_1:35591269-35591288 None:intergenic 75.0%
GGAGGAGGCGGTCCACCTGG+TGG - chr5_1:35591272-35591291 None:intergenic 75.0%
GGTGGAGGAGGCGGTCCACC+TGG - chr5_1:35591275-35591294 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35587949 35593614 35587949 ID=Msa0729120;Name=Msa0729120
chr5_1 mRNA 35587949 35593614 35587949 ID=Msa0729120-mRNA-1;Parent=Msa0729120;Name=Msa0729120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=496|1|1|1|1|1|9|342|997
chr5_1 exon 35587949 35588529 35587949 ID=Msa0729120-mRNA-1:exon:11009;Parent=Msa0729120-mRNA-1
chr5_1 exon 35588620 35588717 35588620 ID=Msa0729120-mRNA-1:exon:11010;Parent=Msa0729120-mRNA-1
chr5_1 exon 35588808 35589542 35588808 ID=Msa0729120-mRNA-1:exon:11011;Parent=Msa0729120-mRNA-1
chr5_1 exon 35590114 35591502 35590114 ID=Msa0729120-mRNA-1:exon:11012;Parent=Msa0729120-mRNA-1
chr5_1 exon 35591619 35591750 35591619 ID=Msa0729120-mRNA-1:exon:11013;Parent=Msa0729120-mRNA-1
chr5_1 exon 35591964 35592145 35591964 ID=Msa0729120-mRNA-1:exon:11014;Parent=Msa0729120-mRNA-1
chr5_1 exon 35592304 35592415 35592304 ID=Msa0729120-mRNA-1:exon:11015;Parent=Msa0729120-mRNA-1
chr5_1 exon 35592702 35592845 35592702 ID=Msa0729120-mRNA-1:exon:11016;Parent=Msa0729120-mRNA-1
chr5_1 exon 35593156 35593614 35593156 ID=Msa0729120-mRNA-1:exon:11017;Parent=Msa0729120-mRNA-1
chr5_1 five_prime_UTR 35587949 35588444 35587949 ID=Msa0729120-mRNA-1:five_prime_utr;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35588445 35588529 35588445 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35588620 35588717 35588620 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35588808 35589542 35588808 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35590114 35591502 35590114 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35591619 35591750 35591619 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35591964 35592145 35591964 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35592304 35592415 35592304 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35592702 35592845 35592702 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 CDS 35593156 35593272 35593156 ID=Msa0729120-mRNA-1:cds;Parent=Msa0729120-mRNA-1
chr5_1 three_prime_UTR 35593273 35593614 35593273 ID=Msa0729120-mRNA-1:three_prime_utr;Parent=Msa0729120-mRNA-1
Gene Sequence

>Msa0729120

ATGATAGTAAGGTTAGGACTCATTGTTGCTGCTTCATTAGCAGCTTTTACTGTTAAGCAGCTCAATGTTGGAAATTCAAAACCAGAACTTGGTGAAGAAAGGTCTAAAGATCGTCAAGATGAGGCCACAGAACAAGAGAAGGTCGCTAGTATTACAGATGATTCTTTTGAAAGGAATGATGATGGGGAGGAAGAAGAGGAGAAAGAGGAGGTTAAATTAATTAGCAGCATAATTAATCGAGCGAATGATTTTGAAGATGATATTCTACCAGAATTTGAAGACCTTTTATCTGGAGAGATTGAGTTATCATTTCCTGGTGAAGAAAATAACGATGAGAAGGACAAAGTTTATGAAATTGAGATGGCATACAATGACAGTGAATTAGAACGATTGCGTCAGCTAGTGAAGGAATTGGAGGAAAGGGAAGTGAAACTTGAAGGAGAATTGCTTGAGTACTATGGTTTGAAGGAGCAGGAATCAGACATTGTGGAGTTACAACGGCAGCTGAAAATTAAGACGGTGGAAATTGACATGCTTAATATTACCATTAATTCTCTGCAAGCGGAGCGAAAGAAGCTTCAAGAAGAACTCACAAATGGAGCTTCTGCGAAGAGAGATCTTGAGTTGGCTAGAAACAAGATAAAGGAGCTACAAAGACAGATGCAGCTTGAGGCTAACCAAACAAAAGGCCAACTTTTGTTGCTTAAACAACAAGTTTCTGGTCTACAAGTGAAAGAAGAGGCGGGTGCAATAAAAGATGCCGAGATTGACAAGAAATTGAAAGCTGTGAATGATTTAGAGGTTGCTGTTGTGGAGCTTAAGAGGAAAAATAAAGAACTTCAATACGAGAAGCGAGAGCTTACTGTTAAACTCAATGCTGCCGAATCTAGAGTTGCGGAGCTCTCCAATATGACAGAGAGTGAAATGGTTGCAAAGGCAAAAGAGGAGGTCAGTAACCTGAGACACGCAAATGAAGACCTGTCGAAGCAAGTGGAAGGACTTCAAATGAATCGGTTTAGCGAAGTTGAAGAACTCGTATACCTTCGTTGGGTCAATGCATGTTTGAGGTATGAGCTAAAGAATCACCAGGCACCCTCAGGAAGACTATCAGCGCGCGACCTCAGCAAGAACCTTAGCCCGAAATCACAAGCGAAGGCAAAGCAGCTGATGTTAGAATATGCCGGATCGGAACGAGGTCAAGGGGACACAGATCTTGAAAGCAACTTCTCCCATCCTTCTTCACCAGGAAGTGAAGATTTTGACAATGCTTCTATTGACAGCTTCTCTAGCAAATATAGTAGTGTTAGCAAGAAAACTAGCTTAATCCAGAAATTGAAGAAATGGGGTAAAACCAAAGATGATTCTAGTGTTCTTTCATCACCATCAAGATCTTTTTCAGGCAGTTCTCCAAAAAGGATGAGTATGAGTGTTAAATCTAGGGGTCCGCTTGAAAGCTTGATGATAAGGAATGCCAGTGATAGTGTAGCAATCACCACCTTTGGTCAAGGGGATCAAGAATCTATTTATTCTCCTGAAACTCCTAATACTGCTAGTGCTGGTCTAAGAAGAGTTACATCAAGTGACTCACTAAATTCGGTTGCTTCTTCATTCCATTTGATGTCCAAGTCATCAGTTGATGCGTCTGTGGACGAAAAGTACCCTGCGTATAAAGATCGCCATAAATTGGCCATGGCTAGGGAGAGTGATCTAAAAGAAAAGGCGGAAAAAGCAAGAGTTCAGAAGTTTGGGAACAGTTCAAATTTGAATATGACCAAGATCGAAAGAGATAGACCTAATATATCTTTGCCACCTAAACTTTCTAAAATAAAGGAGAAGCCAATTGTTCATGCTAGTTCAAATGATCAATCTGAGGATGGAAAGAATGTTGAAAATCAAACCATTAGCAAGATAAAGTTTGCCGACATTGAGAAAAGGCCTACTCGGGTACCAAGGCCACCTCCTAAACCATCAGGTGGTGGTTCTGTTAGCACAAACTCAAATCCTGCAAATGGAATACCATCTGCTCCATCCATTCCTCCTCCTCCTCCTCGTCCACCAGGTGGACCTCCTCCTCCACCAGGTGGACCGCCTCCTCCACCACCTCTTCCAAGAGGCCTATCAAAAGGAGCAGCGGATGACGACAAAGTTCACCGTGCTCCACAGTTAGTCGAATTTTATCAATCATTGATGAAACGGGAAGCAAAGAAGGATACTTCTTCATTATTAGTTTCTTCAACGGGTAACACATCTGATGCTAGGAACAACATGATTGGAGAAATTGAGAATAGATCAACATTCCTCTTAGCTGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCACATCATTGGCAACTGAAGTTAGAGCATCCTCCTTCTCAGATATTGAAGACCTGGTTGCCTTTGTGAACTGGCTAGATGAAGAACTTTCCTTCCTGGTTGATGAACGAGCTGTCTTGAAGCACTTTGATTGGCCTGAAGGTAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAAGATCTGATGAAATTGGAGAATCGAGTCTCTACCTTCGTCGATGATCCCAAACTCTCATGTGAAGTTGCTCTCAAGAAAATGTATTCATTGCTTGAAAAAGTGGAGCAAAGTGTATATGCATTGTTACGAACAAGAGATATGGCTATTTCACGGTACAGAGAATTTGGAATCCCAATAAACTGGCTACAAGATTCTGGAGTTGTAGGCAAGATAAAGCTTTCTTCTGTACAACTAGCAAGGAAGTATATGAAACGTGTTGCATCTGAACTTGATGCATTATCTGGACCTGAGAAGGAACCAGCTAGAGAGTTCTTGATTCTGCAAGGCGTTCGTTTTGCTTTCCGTGTTCATCAGTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGATTTAAGGAGTCGAATCCAAACCCCTCAAGCCCCTCAAGTTGGTGAAGAAGATAGTAAACAACCAGAAACATAG
Protein sequence

>Msa0729120

MIVRLGLIVAASLAAFTVKQLNVGNSKPELGEERSKDRQDEATEQEKVASITDDSFERNDDGEEEEEKEEVKLISSIINRANDFEDDILPEFEDLLSGEIELSFPGEENNDEKDKVYEIEMAYNDSELERLRQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELTNGASAKRDLELARNKIKELQRQMQLEANQTKGQLLLLKQQVSGLQVKEEAGAIKDAEIDKKLKAVNDLEVAVVELKRKNKELQYEKRELTVKLNAAESRVAELSNMTESEMVAKAKEEVSNLRHANEDLSKQVEGLQMNRFSEVEELVYLRWVNACLRYELKNHQAPSGRLSARDLSKNLSPKSQAKAKQLMLEYAGSERGQGDTDLESNFSHPSSPGSEDFDNASIDSFSSKYSSVSKKTSLIQKLKKWGKTKDDSSVLSSPSRSFSGSSPKRMSMSVKSRGPLESLMIRNASDSVAITTFGQGDQESIYSPETPNTASAGLRRVTSSDSLNSVASSFHLMSKSSVDASVDEKYPAYKDRHKLAMARESDLKEKAEKARVQKFGNSSNLNMTKIERDRPNISLPPKLSKIKEKPIVHASSNDQSEDGKNVENQTISKIKFADIEKRPTRVPRPPPKPSGGGSVSTNSNPANGIPSAPSIPPPPPRPPGGPPPPPGGPPPPPPLPRGLSKGAADDDKVHRAPQLVEFYQSLMKREAKKDTSSLLVSSTGNTSDARNNMIGEIENRSTFLLAVKADVETQGDFVTSLATEVRASSFSDIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLENRVSTFVDDPKLSCEVALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPINWLQDSGVVGKIKLSSVQLARKYMKRVASELDALSGPEKEPAREFLILQGVRFAFRVHQFAGGFDAESMKAFEDLRSRIQTPQAPQVGEEDSKQPET*