AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0196620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196620 MtrunA17_Chr2g0288451 98.930 374 4 0 1 374 1 374 0.0 751
Msa0196620 MtrunA17_Chr3g0099081 68.155 336 101 2 44 373 12 347 1.33e-168 474
Msa0196620 MtrunA17_Chr8g0376321 79.402 301 11 1 74 374 1 250 9.31e-165 461
Msa0196620 MtrunA17_Chr4g0073341 29.380 371 194 12 9 373 17 325 6.97e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196620 AT4G04640.1 81.383 376 65 3 1 374 1 373 0.0 603
Msa0196620 AT1G15700.1 70.725 345 100 1 30 373 39 383 2.55e-177 498
Msa0196620 AT2G33040.1 31.661 319 171 10 57 373 48 321 4.90e-28 112

Find 62 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTAGACCACACTGAATT+TGG 0.110416 2_1:-13946156 None:intergenic
TATTATCAGTGTTGGTAAAA+AGG 0.215367 2_1:+13946510 Msa0196620:CDS
GGTGAAATCTGTGATATTAA+TGG 0.242769 2_1:+13946751 Msa0196620:CDS
GCTCAAGAAGCTGTTGTTAA+TGG 0.249925 2_1:+13946265 Msa0196620:CDS
TCAAATCTTGAGGGCTTTGC+AGG 0.276662 2_1:+13946948 Msa0196620:CDS
GTGACAGTGGAAGCAAAGTA+TGG 0.339355 2_1:-13946723 None:intergenic
GGAAGCAAAGTATGGATTAT+AGG 0.339933 2_1:-13946715 None:intergenic
ATATCACAGATTTCACCTTT+TGG 0.359402 2_1:-13946745 None:intergenic
AACCTATCAACAGGTATATA+AGG 0.362640 2_1:-13946556 None:intergenic
TCCTGCTCAAACTGCAAAAT+CGG 0.366440 2_1:-13946880 None:intergenic
TGAGACCAACATGGTGATAT+TGG 0.370949 2_1:-13946023 None:intergenic
TCTTAGACCACACTGAATTT+GGG 0.374759 2_1:-13946155 None:intergenic
ACTGGTCTAAGCTTAGTTAG+AGG 0.375333 2_1:-13946364 None:intergenic
CAGCACCAGCAACAATTTCC+AGG 0.387882 2_1:-13947101 None:intergenic
TGAATTTGGGTTGGTCTTGA+AGG 0.393465 2_1:-13946142 None:intergenic
ATTGCTGAGTTGAAAGGTCT+TGG 0.399341 2_1:+13946475 Msa0196620:CDS
GACCTTATATACCTGTTGAT+AGG 0.399954 2_1:+13946554 Msa0196620:CDS
CTGTTGAAAGAGATGCTGTT+AGG 0.407775 2_1:+13946836 Msa0196620:CDS
GGCATCAGGTAATGAAGGTT+TGG 0.412967 2_1:-13946047 None:intergenic
CCTGTTGATAGGTTTCTTGA+AGG 0.420186 2_1:+13946565 Msa0196620:CDS
TTCAGGTTAACAACGAAAGA+AGG 0.449455 2_1:+13946805 Msa0196620:CDS
TGAACGGAAAGAGAGGTTAG+AGG 0.461609 2_1:-13946068 None:intergenic
TTTGAACAGTCAAATCTTGA+GGG 0.462626 2_1:+13946939 Msa0196620:CDS
GTTGCTCTTGTTGTTTGCAC+TGG 0.463249 2_1:+13946394 Msa0196620:CDS
TGTTGCTGGTGCTGATGCCT+TGG 0.464852 2_1:+13947110 Msa0196620:CDS
CCTTCAAGAAACCTATCAAC+AGG 0.466272 2_1:-13946565 None:intergenic
TCAACTAGTGTCTGTGAGAA+AGG 0.467803 2_1:-13946292 None:intergenic
ATTTGACTGTTCAAATAAAG+TGG 0.475054 2_1:-13946931 None:intergenic
AAAGAGAGGTTAGAGGCATC+AGG 0.475313 2_1:-13946061 None:intergenic
TAAGATCACTGGTGAAATCC+TGG 0.483893 2_1:+13947083 Msa0196620:CDS
AGTGCATCAAGAATCTGAAC+AGG 0.485687 2_1:-13946904 None:intergenic
GAAATCCTGGAAATTGTTGC+TGG 0.495138 2_1:+13947096 Msa0196620:CDS
GTTGTTTGCACTGGTGATAG+AGG 0.498449 2_1:+13946403 Msa0196620:CDS
GTGCTTCTTTAGCAGTAGGA+AGG 0.507770 2_1:-13946594 None:intergenic
TTGCTTCCACTGTCACCAAA+AGG 0.509640 2_1:+13946730 Msa0196620:CDS
TTAGAGGCATCAGGTAATGA+AGG 0.514624 2_1:-13946052 None:intergenic
GTTGATAGGTTTCTTGAAGG+TGG 0.518256 2_1:+13946568 Msa0196620:CDS
TTTCACCAGTGATCTTAGCT+TGG 0.530031 2_1:-13947077 None:intergenic
AATAGGATTGCTGAGTTGAA+AGG 0.535194 2_1:+13946469 Msa0196620:CDS
GTTTGTGCTTCTTTAGCAGT+AGG 0.537662 2_1:-13946598 None:intergenic
TTTGAGAAGGAAGCTGAAAA+GGG 0.538194 2_1:-13946099 None:intergenic
ATTTGAACAGTCAAATCTTG+AGG 0.540431 2_1:+13946938 Msa0196620:CDS
CAACTTCTTCACTAACAAAG+AGG 0.544704 2_1:-13946642 None:intergenic
GATTACACTATTATCAGTGT+TGG 0.547808 2_1:+13946502 Msa0196620:CDS
GCTGTTCGTTGATGCTGTAA+AGG 0.551485 2_1:-13946318 None:intergenic
AGACCACACTGAATTTGGGT+TGG 0.556222 2_1:-13946151 None:intergenic
GTTGAAGAAGAATTTGTCAA+GGG 0.556839 2_1:+13947038 Msa0196620:CDS
TTGCTCCAATATCACCATGT+TGG 0.572873 2_1:+13946018 Msa0196620:CDS
AGTTGAAGAAGAATTTGTCA+AGG 0.578085 2_1:+13947037 Msa0196620:CDS
CAACGCCAAGCTAAGATCAC+TGG 0.583862 2_1:+13947072 Msa0196620:CDS
TAGAGGAGCTTCGATATCGT+CGG 0.592502 2_1:-13946347 None:intergenic
AACTTCTTCACTAACAAAGA+GGG 0.594771 2_1:-13946641 None:intergenic
GGTGATAGAGGTCTCTGTGG+TGG 0.597310 2_1:+13946415 Msa0196620:CDS
CACTGAAGCAATGAAGCTTG+TGG 0.611051 2_1:+13946222 Msa0196620:CDS
TGAGAGCTGAACGGAAAGAG+AGG 0.628539 2_1:-13946075 None:intergenic
AAACTGTGTTGATGCTGCTG+AGG 0.639433 2_1:+13946774 Msa0196620:CDS
GAAAAGGGCTGAGAGCTGAA+CGG 0.641643 2_1:-13946084 None:intergenic
TATAAATACACTCTATACCA+AGG 0.641733 2_1:-13947127 None:intergenic
CAGGTATATAAGGTCTACGA+AGG 0.649710 2_1:-13946546 None:intergenic
ACTGGTGATAGAGGTCTCTG+TGG 0.722605 2_1:+13946412 Msa0196620:CDS
AGGTTTGGATGAGACCAACA+TGG 0.753902 2_1:-13946032 None:intergenic
AGACCAACCCAAATTCAGTG+TGG 0.755194 2_1:+13946148 Msa0196620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAAAAAAGCTGAAAAT+AGG + chr2_1:13946452-13946471 Msa0196620:CDS 20.0%
!! TATTGAAAAAAGCTGAAAAT+AGG + chr2_1:13946452-13946471 Msa0196620:CDS 20.0%
!!! TATTATCAGTGTTGGTAAAA+AGG + chr2_1:13946510-13946529 Msa0196620:CDS 25.0%
!!! ATTATCAGTGTTGGTAAAAA+GGG + chr2_1:13946511-13946530 Msa0196620:CDS 25.0%
! ATTTGACTGTTCAAATAAAG+TGG - chr2_1:13946934-13946953 None:intergenic 25.0%
!!! TATTATCAGTGTTGGTAAAA+AGG + chr2_1:13946510-13946529 Msa0196620:CDS 25.0%
!!! ATTATCAGTGTTGGTAAAAA+GGG + chr2_1:13946511-13946530 Msa0196620:CDS 25.0%
! ATTTGACTGTTCAAATAAAG+TGG - chr2_1:13946934-13946953 None:intergenic 25.0%
!! TGTTTTTGACAGAGTCAATA+CGG - chr2_1:13946192-13946211 None:intergenic 30.0%
GATTACACTATTATCAGTGT+TGG + chr2_1:13946502-13946521 Msa0196620:CDS 30.0%
AACCTATCAACAGGTATATA+AGG - chr2_1:13946559-13946578 None:intergenic 30.0%
AACTTCTTCACTAACAAAGA+GGG - chr2_1:13946644-13946663 None:intergenic 30.0%
! ATATCACAGATTTCACCTTT+TGG - chr2_1:13946748-13946767 None:intergenic 30.0%
GGTGAAATCTGTGATATTAA+TGG + chr2_1:13946751-13946770 Msa0196620:CDS 30.0%
ATTTGAACAGTCAAATCTTG+AGG + chr2_1:13946938-13946957 Msa0196620:CDS 30.0%
TTTGAACAGTCAAATCTTGA+GGG + chr2_1:13946939-13946958 Msa0196620:CDS 30.0%
AGTTGAAGAAGAATTTGTCA+AGG + chr2_1:13947037-13947056 Msa0196620:CDS 30.0%
GTTGAAGAAGAATTTGTCAA+GGG + chr2_1:13947038-13947057 Msa0196620:CDS 30.0%
!! TGTTTTTGACAGAGTCAATA+CGG - chr2_1:13946192-13946211 None:intergenic 30.0%
GATTACACTATTATCAGTGT+TGG + chr2_1:13946502-13946521 Msa0196620:CDS 30.0%
AACCTATCAACAGGTATATA+AGG - chr2_1:13946559-13946578 None:intergenic 30.0%
AACTTCTTCACTAACAAAGA+GGG - chr2_1:13946644-13946663 None:intergenic 30.0%
! ATATCACAGATTTCACCTTT+TGG - chr2_1:13946748-13946767 None:intergenic 30.0%
GGTGAAATCTGTGATATTAA+TGG + chr2_1:13946751-13946770 Msa0196620:CDS 30.0%
ATTTGAACAGTCAAATCTTG+AGG + chr2_1:13946938-13946957 Msa0196620:CDS 30.0%
TTTGAACAGTCAAATCTTGA+GGG + chr2_1:13946939-13946958 Msa0196620:CDS 30.0%
AGTTGAAGAAGAATTTGTCA+AGG + chr2_1:13947037-13947056 Msa0196620:CDS 30.0%
GTTGAAGAAGAATTTGTCAA+GGG + chr2_1:13947038-13947057 Msa0196620:CDS 30.0%
TTTGAGAAGGAAGCTGAAAA+GGG - chr2_1:13946102-13946121 None:intergenic 35.0%
!! TTTTGAGAAGGAAGCTGAAA+AGG - chr2_1:13946103-13946122 None:intergenic 35.0%
!!! GAAGATGATGAGTTTTGAGA+AGG - chr2_1:13946115-13946134 None:intergenic 35.0%
TCTTAGACCACACTGAATTT+GGG - chr2_1:13946158-13946177 None:intergenic 35.0%
!!! ACAAGAGCAACTTTTTTCAC+TGG - chr2_1:13946385-13946404 None:intergenic 35.0%
! AATAGGATTGCTGAGTTGAA+AGG + chr2_1:13946469-13946488 Msa0196620:CDS 35.0%
GACCTTATATACCTGTTGAT+AGG + chr2_1:13946554-13946573 Msa0196620:CDS 35.0%
CAACTTCTTCACTAACAAAG+AGG - chr2_1:13946645-13946664 None:intergenic 35.0%
! GGAAGCAAAGTATGGATTAT+AGG - chr2_1:13946718-13946737 None:intergenic 35.0%
! TTCAGGTTAACAACGAAAGA+AGG + chr2_1:13946805-13946824 Msa0196620:CDS 35.0%
TTTGAGAAGGAAGCTGAAAA+GGG - chr2_1:13946102-13946121 None:intergenic 35.0%
!! TTTTGAGAAGGAAGCTGAAA+AGG - chr2_1:13946103-13946122 None:intergenic 35.0%
!!! GAAGATGATGAGTTTTGAGA+AGG - chr2_1:13946115-13946134 None:intergenic 35.0%
TCTTAGACCACACTGAATTT+GGG - chr2_1:13946158-13946177 None:intergenic 35.0%
!!! ACAAGAGCAACTTTTTTCAC+TGG - chr2_1:13946385-13946404 None:intergenic 35.0%
! AATAGGATTGCTGAGTTGAA+AGG + chr2_1:13946469-13946488 Msa0196620:CDS 35.0%
GACCTTATATACCTGTTGAT+AGG + chr2_1:13946554-13946573 Msa0196620:CDS 35.0%
CAACTTCTTCACTAACAAAG+AGG - chr2_1:13946645-13946664 None:intergenic 35.0%
! GGAAGCAAAGTATGGATTAT+AGG - chr2_1:13946718-13946737 None:intergenic 35.0%
! TTCAGGTTAACAACGAAAGA+AGG + chr2_1:13946805-13946824 Msa0196620:CDS 35.0%
TTGCTCCAATATCACCATGT+TGG + chr2_1:13946018-13946037 Msa0196620:CDS 40.0%
TGAGACCAACATGGTGATAT+TGG - chr2_1:13946026-13946045 None:intergenic 40.0%
!! TTAGAGGCATCAGGTAATGA+AGG - chr2_1:13946055-13946074 None:intergenic 40.0%
!! TGAATTTGGGTTGGTCTTGA+AGG - chr2_1:13946145-13946164 None:intergenic 40.0%
CTCTTAGACCACACTGAATT+TGG - chr2_1:13946159-13946178 None:intergenic 40.0%
GCTCAAGAAGCTGTTGTTAA+TGG + chr2_1:13946265-13946284 Msa0196620:CDS 40.0%
TCAACTAGTGTCTGTGAGAA+AGG - chr2_1:13946295-13946314 None:intergenic 40.0%
! ACTGGTCTAAGCTTAGTTAG+AGG - chr2_1:13946367-13946386 None:intergenic 40.0%
! ATTGCTGAGTTGAAAGGTCT+TGG + chr2_1:13946475-13946494 Msa0196620:CDS 40.0%
CAGGTATATAAGGTCTACGA+AGG - chr2_1:13946549-13946568 None:intergenic 40.0%
CCTTCAAGAAACCTATCAAC+AGG - chr2_1:13946568-13946587 None:intergenic 40.0%
! CCTGTTGATAGGTTTCTTGA+AGG + chr2_1:13946565-13946584 Msa0196620:CDS 40.0%
! GTTGATAGGTTTCTTGAAGG+TGG + chr2_1:13946568-13946587 Msa0196620:CDS 40.0%
GTTTGTGCTTCTTTAGCAGT+AGG - chr2_1:13946601-13946620 None:intergenic 40.0%
!! ATTTCACCTTTTGGTGACAG+TGG - chr2_1:13946739-13946758 None:intergenic 40.0%
CTGTTGAAAGAGATGCTGTT+AGG + chr2_1:13946836-13946855 Msa0196620:CDS 40.0%
TCCTGCTCAAACTGCAAAAT+CGG - chr2_1:13946883-13946902 None:intergenic 40.0%
AGTGCATCAAGAATCTGAAC+AGG - chr2_1:13946907-13946926 None:intergenic 40.0%
TTTCACCAGTGATCTTAGCT+TGG - chr2_1:13947080-13947099 None:intergenic 40.0%
TAAGATCACTGGTGAAATCC+TGG + chr2_1:13947083-13947102 Msa0196620:CDS 40.0%
GAAATCCTGGAAATTGTTGC+TGG + chr2_1:13947096-13947115 Msa0196620:CDS 40.0%
TTGCTCCAATATCACCATGT+TGG + chr2_1:13946018-13946037 Msa0196620:CDS 40.0%
TGAGACCAACATGGTGATAT+TGG - chr2_1:13946026-13946045 None:intergenic 40.0%
!! TTAGAGGCATCAGGTAATGA+AGG - chr2_1:13946055-13946074 None:intergenic 40.0%
!! TGAATTTGGGTTGGTCTTGA+AGG - chr2_1:13946145-13946164 None:intergenic 40.0%
CTCTTAGACCACACTGAATT+TGG - chr2_1:13946159-13946178 None:intergenic 40.0%
GCTCAAGAAGCTGTTGTTAA+TGG + chr2_1:13946265-13946284 Msa0196620:CDS 40.0%
TCAACTAGTGTCTGTGAGAA+AGG - chr2_1:13946295-13946314 None:intergenic 40.0%
! ACTGGTCTAAGCTTAGTTAG+AGG - chr2_1:13946367-13946386 None:intergenic 40.0%
! ATTGCTGAGTTGAAAGGTCT+TGG + chr2_1:13946475-13946494 Msa0196620:CDS 40.0%
CAGGTATATAAGGTCTACGA+AGG - chr2_1:13946549-13946568 None:intergenic 40.0%
CCTTCAAGAAACCTATCAAC+AGG - chr2_1:13946568-13946587 None:intergenic 40.0%
! CCTGTTGATAGGTTTCTTGA+AGG + chr2_1:13946565-13946584 Msa0196620:CDS 40.0%
! GTTGATAGGTTTCTTGAAGG+TGG + chr2_1:13946568-13946587 Msa0196620:CDS 40.0%
GTTTGTGCTTCTTTAGCAGT+AGG - chr2_1:13946601-13946620 None:intergenic 40.0%
!! ATTTCACCTTTTGGTGACAG+TGG - chr2_1:13946739-13946758 None:intergenic 40.0%
CTGTTGAAAGAGATGCTGTT+AGG + chr2_1:13946836-13946855 Msa0196620:CDS 40.0%
TCCTGCTCAAACTGCAAAAT+CGG - chr2_1:13946883-13946902 None:intergenic 40.0%
AGTGCATCAAGAATCTGAAC+AGG - chr2_1:13946907-13946926 None:intergenic 40.0%
TTTCACCAGTGATCTTAGCT+TGG - chr2_1:13947080-13947099 None:intergenic 40.0%
TAAGATCACTGGTGAAATCC+TGG + chr2_1:13947083-13947102 Msa0196620:CDS 40.0%
GAAATCCTGGAAATTGTTGC+TGG + chr2_1:13947096-13947115 Msa0196620:CDS 40.0%
AGGTTTGGATGAGACCAACA+TGG - chr2_1:13946035-13946054 None:intergenic 45.0%
GGCATCAGGTAATGAAGGTT+TGG - chr2_1:13946050-13946069 None:intergenic 45.0%
!! AAAGAGAGGTTAGAGGCATC+AGG - chr2_1:13946064-13946083 None:intergenic 45.0%
TGAACGGAAAGAGAGGTTAG+AGG - chr2_1:13946071-13946090 None:intergenic 45.0%
AGACCAACCCAAATTCAGTG+TGG + chr2_1:13946148-13946167 Msa0196620:CDS 45.0%
AGACCACACTGAATTTGGGT+TGG - chr2_1:13946154-13946173 None:intergenic 45.0%
CACTGAAGCAATGAAGCTTG+TGG + chr2_1:13946222-13946241 Msa0196620:CDS 45.0%
GCTGTTCGTTGATGCTGTAA+AGG - chr2_1:13946321-13946340 None:intergenic 45.0%
TAGAGGAGCTTCGATATCGT+CGG - chr2_1:13946350-13946369 None:intergenic 45.0%
!! GTTGCTCTTGTTGTTTGCAC+TGG + chr2_1:13946394-13946413 Msa0196620:CDS 45.0%
! GTTGTTTGCACTGGTGATAG+AGG + chr2_1:13946403-13946422 Msa0196620:CDS 45.0%
GTGCTTCTTTAGCAGTAGGA+AGG - chr2_1:13946597-13946616 None:intergenic 45.0%
GTGACAGTGGAAGCAAAGTA+TGG - chr2_1:13946726-13946745 None:intergenic 45.0%
TTGCTTCCACTGTCACCAAA+AGG + chr2_1:13946730-13946749 Msa0196620:CDS 45.0%
! AAACTGTGTTGATGCTGCTG+AGG + chr2_1:13946774-13946793 Msa0196620:CDS 45.0%
TCAAATCTTGAGGGCTTTGC+AGG + chr2_1:13946948-13946967 Msa0196620:CDS 45.0%
AGGTTTGGATGAGACCAACA+TGG - chr2_1:13946035-13946054 None:intergenic 45.0%
GGCATCAGGTAATGAAGGTT+TGG - chr2_1:13946050-13946069 None:intergenic 45.0%
!! AAAGAGAGGTTAGAGGCATC+AGG - chr2_1:13946064-13946083 None:intergenic 45.0%
TGAACGGAAAGAGAGGTTAG+AGG - chr2_1:13946071-13946090 None:intergenic 45.0%
AGACCAACCCAAATTCAGTG+TGG + chr2_1:13946148-13946167 Msa0196620:CDS 45.0%
AGACCACACTGAATTTGGGT+TGG - chr2_1:13946154-13946173 None:intergenic 45.0%
CACTGAAGCAATGAAGCTTG+TGG + chr2_1:13946222-13946241 Msa0196620:CDS 45.0%
GCTGTTCGTTGATGCTGTAA+AGG - chr2_1:13946321-13946340 None:intergenic 45.0%
TAGAGGAGCTTCGATATCGT+CGG - chr2_1:13946350-13946369 None:intergenic 45.0%
!! GTTGCTCTTGTTGTTTGCAC+TGG + chr2_1:13946394-13946413 Msa0196620:CDS 45.0%
! GTTGTTTGCACTGGTGATAG+AGG + chr2_1:13946403-13946422 Msa0196620:CDS 45.0%
GTGCTTCTTTAGCAGTAGGA+AGG - chr2_1:13946597-13946616 None:intergenic 45.0%
GTGACAGTGGAAGCAAAGTA+TGG - chr2_1:13946726-13946745 None:intergenic 45.0%
TTGCTTCCACTGTCACCAAA+AGG + chr2_1:13946730-13946749 Msa0196620:CDS 45.0%
! AAACTGTGTTGATGCTGCTG+AGG + chr2_1:13946774-13946793 Msa0196620:CDS 45.0%
TCAAATCTTGAGGGCTTTGC+AGG + chr2_1:13946948-13946967 Msa0196620:CDS 45.0%
TGAGAGCTGAACGGAAAGAG+AGG - chr2_1:13946078-13946097 None:intergenic 50.0%
GAAAAGGGCTGAGAGCTGAA+CGG - chr2_1:13946087-13946106 None:intergenic 50.0%
ACTGGTGATAGAGGTCTCTG+TGG + chr2_1:13946412-13946431 Msa0196620:CDS 50.0%
! CTGCTGAGGATGAGCTTTTC+AGG + chr2_1:13946788-13946807 Msa0196620:CDS 50.0%
!! GCCGATTTTGCAGTTTGAGC+AGG + chr2_1:13946879-13946898 Msa0196620:CDS 50.0%
CAACGCCAAGCTAAGATCAC+TGG + chr2_1:13947072-13947091 Msa0196620:CDS 50.0%
CAGCACCAGCAACAATTTCC+AGG - chr2_1:13947104-13947123 None:intergenic 50.0%
TGAGAGCTGAACGGAAAGAG+AGG - chr2_1:13946078-13946097 None:intergenic 50.0%
GAAAAGGGCTGAGAGCTGAA+CGG - chr2_1:13946087-13946106 None:intergenic 50.0%
ACTGGTGATAGAGGTCTCTG+TGG + chr2_1:13946412-13946431 Msa0196620:CDS 50.0%
! CTGCTGAGGATGAGCTTTTC+AGG + chr2_1:13946788-13946807 Msa0196620:CDS 50.0%
!! GCCGATTTTGCAGTTTGAGC+AGG + chr2_1:13946879-13946898 Msa0196620:CDS 50.0%
CAACGCCAAGCTAAGATCAC+TGG + chr2_1:13947072-13947091 Msa0196620:CDS 50.0%
CAGCACCAGCAACAATTTCC+AGG - chr2_1:13947104-13947123 None:intergenic 50.0%
GGTGATAGAGGTCTCTGTGG+TGG + chr2_1:13946415-13946434 Msa0196620:CDS 55.0%
!! TGTTGCTGGTGCTGATGCCT+TGG + chr2_1:13947110-13947129 Msa0196620:CDS 55.0%
GGTGATAGAGGTCTCTGTGG+TGG + chr2_1:13946415-13946434 Msa0196620:CDS 55.0%
!! TGTTGCTGGTGCTGATGCCT+TGG + chr2_1:13947110-13947129 Msa0196620:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 13946013 13947137 13946013 ID=Msa0196620;Name=Msa0196620
chr2_1 mRNA 13946013 13947137 13946013 ID=Msa0196620-mRNA-1;Parent=Msa0196620;Name=Msa0196620-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|374
chr2_1 exon 13946013 13947137 13946013 ID=Msa0196620-mRNA-1:exon:6020;Parent=Msa0196620-mRNA-1
chr2_1 CDS 13946013 13947137 13946013 ID=Msa0196620-mRNA-1:cds;Parent=Msa0196620-mRNA-1
Gene Sequence

>Msa0196620

ATGTCTTGCTCCAATATCACCATGTTGGTCTCATCCAAACCTTCATTACCTGATGCCTCTAACCTCTCTTTCCGTTCAGCTCTCAGCCCTTTTCAGCTTCCTTCTCAAAACTCATCATCTTCTTGCACTCCTTCAAGACCAACCCAAATTCAGTGTGGTCTAAGAGAACTTAGAAACCGTATTGACTCTGTCAAAAACACTCAGAAAATCACTGAAGCAATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGCAGACCTTTCTCACAGACACTAGTTGAAGTCCTTTACAGCATCAACGAACAGCTTCAAACCGACGATATCGAAGCTCCTCTAACTAAGCTTAGACCAGTGAAAAAAGTTGCTCTTGTTGTTTGCACTGGTGATAGAGGTCTCTGTGGTGGATTCAACAATGCAATATTGAAAAAAGCTGAAAATAGGATTGCTGAGTTGAAAGGTCTTGGACTTGATTACACTATTATCAGTGTTGGTAAAAAGGGTAACTCTTATTTCCTTCGTAGACCTTATATACCTGTTGATAGGTTTCTTGAAGGTGGAAACCTTCCTACTGCTAAAGAAGCACAAACTATTGCTGATGATGTTTTCTCCCTCTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTATTGTACACTAAATTTGTGTCATTAGTGAAATCAGAGCCTATAATCCATACTTTGCTTCCACTGTCACCAAAAGGTGAAATCTGTGATATTAATGGAAACTGTGTTGATGCTGCTGAGGATGAGCTTTTCAGGTTAACAACGAAAGAAGGAAAGTTAACTGTTGAAAGAGATGCTGTTAGGTCTAAGACGATTGATTTTTCGCCGATTTTGCAGTTTGAGCAGGATCCTGTTCAGATTCTTGATGCACTTTTGCCACTTTATTTGAACAGTCAAATCTTGAGGGCTTTGCAGGAATCACTTGCTAGTGAATTAGCTGCTAGAATGAGTGCTATGAGTAGTGCTTGTGATAATGCTATTGAGTTGAAGAAGAATTTGTCAAGGGTTTATAATAGACAACGCCAAGCTAAGATCACTGGTGAAATCCTGGAAATTGTTGCTGGTGCTGATGCCTTGGTATAG

Protein sequence

>Msa0196620

MSCSNITMLVSSKPSLPDASNLSFRSALSPFQLPSQNSSSSCTPSRPTQIQCGLRELRNRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYSINEQLQTDDIEAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAENRIAELKGLGLDYTIISVGKKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDAVRSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSACDNAIELKKNLSRVYNRQRQAKITGEILEIVAGADALV*