AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700930 MtrunA17_Chr8g0378721 91.871 529 43 0 1 529 1 529 0.0 1028
Msa0700930 MtrunA17_Chr8g0378671 86.742 528 67 2 1 527 1 526 0.0 964
Msa0700930 MtrunA17_Chr8g0378701 87.696 382 47 0 1 382 15 396 0.0 713
Msa0700930 MtrunA17_Chr8g0378691 90.411 146 14 0 382 527 9 154 9.69e-91 275
Msa0700930 MtrunA17_Chr4g0027961 36.000 475 255 17 78 527 89 539 1.10e-83 270
Msa0700930 MtrunA17_Chr3g0136771 28.538 431 254 12 67 465 84 492 3.80e-46 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700930 AT4G25650.1 64.316 468 158 3 69 527 67 534 0.0 668
Msa0700930 AT4G25650.2 61.303 491 158 4 69 527 67 557 0.0 655
Msa0700930 AT3G44880.1 34.733 524 275 20 43 527 39 534 9.61e-85 273
Msa0700930 AT2G24820.1 27.533 454 268 12 49 465 50 479 2.63e-46 170
Msa0700930 AT1G44446.4 21.892 370 212 15 85 431 119 434 3.25e-11 65.9
Msa0700930 AT1G44446.1 21.892 370 212 15 85 431 221 536 4.10e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGGTGCAAGTTTATT+TGG 0.156557 4_4:+72099750 None:intergenic
CATTAGGAATTCAAATTAAA+TGG 0.162683 4_4:+72097627 None:intergenic
CAACAAAGAATATAGGAATT+TGG 0.172236 4_4:+72097490 None:intergenic
TCTGAACTTGTTTCATCTTC+AGG 0.212251 4_4:+72101773 None:intergenic
CCGGAATTTGCTAATATTAC+AGG 0.252860 4_4:+72097392 None:intergenic
TTGTATTGAGGATCAGTATT+TGG 0.266413 4_4:+72100720 None:intergenic
ATATCAGATTCTTCCACTTT+TGG 0.267571 4_4:-72097329 Msa0700930:three_prime_UTR
CACCACATTGAGACTCTTAT+AGG 0.274363 4_4:+72097990 None:intergenic
CTTTGGGTTAATACCGCTTT+TGG 0.280602 4_4:-72097417 Msa0700930:three_prime_UTR
CAACGGTTTCACAGCAAATC+AGG 0.294043 4_4:-72099826 Msa0700930:CDS
CTGCTGTTGCCGGGACTAAC+AGG 0.295981 4_4:+72099581 None:intergenic
GAAGTGTTCCCACGAATTAA+TGG 0.299892 4_4:+72101875 None:intergenic
CCTGTCCATAAGTTGTTCTC+TGG 0.305227 4_4:+72098679 None:intergenic
ATCCACAGCCCAAAGTTTCT+TGG 0.314198 4_4:+72099542 None:intergenic
TCAATCCTTCCTTCAGATAA+AGG 0.315750 4_4:+72101584 None:intergenic
GGAAACAGAGATATTGCTTA+TGG 0.316235 4_4:-72100627 Msa0700930:CDS
TGTTGATATTTATTATACTT+TGG 0.320522 4_4:-72097434 Msa0700930:three_prime_UTR
CTACTACTGGAATCTGTTAA+TGG 0.328223 4_4:+72101818 None:intergenic
AACAAAGAATATAGGAATTT+GGG 0.330074 4_4:+72097491 None:intergenic
CCTGTAATATTAGCAAATTC+CGG 0.331131 4_4:-72097392 Msa0700930:three_prime_UTR
GTTGATATTTATTATACTTT+GGG 0.334427 4_4:-72097433 Msa0700930:three_prime_UTR
CAAATTCCTATATTCTTTGT+TGG 0.340214 4_4:-72097489 Msa0700930:three_prime_UTR
TGGGAATTGATGTTGTTATA+TGG 0.344667 4_4:-72101667 Msa0700930:CDS
TATAGCAAGATGTTAGCATT+AGG 0.350375 4_4:+72097611 None:intergenic
ACCTCCCAGAGAACAACTTA+TGG 0.350458 4_4:-72098684 Msa0700930:CDS
CCGTCCTTTACTAGCGTAAT+GGG 0.353585 4_4:-72100648 Msa0700930:CDS
GGGATGTATGTTGCTTTGTT+TGG 0.359314 4_4:-72097552 Msa0700930:three_prime_UTR
CCAAATCAGTCTGCTGTTGC+CGG 0.371564 4_4:+72099571 None:intergenic
GGTGCTTCCCAAGAAACTTT+GGG 0.374338 4_4:-72099550 Msa0700930:CDS
CACGTGAAGGTTACTACTAC+TGG 0.379514 4_4:+72101805 None:intergenic
ATGTTAAATGATTTAGCTTA+GGG 0.379749 4_4:+72102058 None:intergenic
GTGGAAGAATCTGATATTAC+AGG 0.386829 4_4:+72097335 None:intergenic
AATGTTAAATGATTTAGCTT+AGG 0.390329 4_4:+72102057 None:intergenic
AGAATGGTATCGTGTGGTTT+TGG 0.391412 4_4:-72100743 Msa0700930:CDS
ATCATATCAGTTGCTTCAGT+TGG 0.398957 4_4:-72097952 Msa0700930:CDS
AAGGCAGATGCTCTTGTGAT+TGG 0.399532 4_4:-72098785 Msa0700930:CDS
CTCTGGGAGGTGTAGGAGGA+AGG 0.400762 4_4:+72098696 None:intergenic
CCGGCAACAGCAGACTGATT+TGG 0.404958 4_4:-72099571 Msa0700930:CDS
AAGGACGGATCATCAATTTC+TGG 0.405521 4_4:+72100663 None:intergenic
ATTCATCCAACAAAGAATAT+AGG 0.408603 4_4:+72097483 None:intergenic
TGGTGCTTCCCAAGAAACTT+TGG 0.411359 4_4:-72099551 Msa0700930:CDS
ATACCATTCTGCACAGTACT+TGG 0.413715 4_4:+72100756 None:intergenic
TGAAGGAAGGATTGATCAAT+GGG 0.415631 4_4:-72101576 Msa0700930:CDS
ACAAGAGCATCTGCCTTTGT+TGG 0.416937 4_4:+72098791 None:intergenic
AAACATTGCCTTCTGCCAAT+TGG 0.423428 4_4:+72098817 None:intergenic
TCCACAGCCCAAAGTTTCTT+GGG 0.430795 4_4:+72099543 None:intergenic
GTAATAATATCTTTGTATTG+AGG 0.430842 4_4:+72100708 None:intergenic
AGTTCAGAAGAAATTTGCTT+TGG 0.431020 4_4:-72099618 Msa0700930:CDS
CATCAATTTCTGGTATGAAT+GGG 0.432152 4_4:+72100673 None:intergenic
AGCTACAACAAGAAATTCAA+TGG 0.435956 4_4:-72097896 Msa0700930:CDS
TCATCAATTTCTGGTATGAA+TGG 0.439816 4_4:+72100672 None:intergenic
TCCCAAGAAACTTTGGGCTG+TGG 0.443485 4_4:-72099544 Msa0700930:CDS
TGTTCCCTTCTGCAAAGTAA+TGG 0.446881 4_4:+72102007 None:intergenic
AAGAAATTCAATGGTTGTGT+TGG 0.446962 4_4:-72097887 Msa0700930:CDS
AATATGCAATTTCAGGTATG+AGG 0.448521 4_4:-72100070 Msa0700930:intron
CAATATGTGATCTTGACAAA+AGG 0.457440 4_4:-72101712 Msa0700930:CDS
CTGTCCATAAGTTGTTCTCT+GGG 0.462546 4_4:+72098680 None:intergenic
TATTCTTTGTTGGATGAATG+AGG 0.464146 4_4:-72097479 Msa0700930:three_prime_UTR
ATATGTGGTTCAAGTGCTAT+TGG 0.474819 4_4:+72101947 None:intergenic
CTGAAGGAAGGATTGATCAA+TGG 0.475748 4_4:-72101577 Msa0700930:CDS
TATCTAACTCTTCAATTGAC+AGG 0.476177 4_4:+72099850 None:intergenic
TGCTTTCATTCGCGTTGTCA+CGG 0.476403 4_4:-72097861 Msa0700930:CDS
GAAACAGAGATATTGCTTAT+GGG 0.479650 4_4:-72100626 Msa0700930:intron
GGCACCTCCTGACGGACCTC+CGG 0.480246 4_4:-72101486 Msa0700930:intron
AATATCAACATCTCTAGAAA+AGG 0.481507 4_4:+72097447 None:intergenic
TGCACCTTCTGATGAAACTA+AGG 0.483654 4_4:-72099739 Msa0700930:intron
GAATGGAGAGGAAAATATAG+TGG 0.487849 4_4:-72098722 Msa0700930:CDS
GTAGTTACCGGAGGTCCGTC+AGG 0.488978 4_4:+72101479 None:intergenic
TTGGTACTTAAGAGGAGCGT+TGG 0.490914 4_4:-72097701 Msa0700930:three_prime_UTR
GATAATGAAACTAGAGGCTC+AGG 0.491540 4_4:+72102080 None:intergenic
CAACACTTCCATTAATTCGT+GGG 0.491754 4_4:-72101883 Msa0700930:CDS
TCATATCAGTTGCTTCAGTT+GGG 0.492517 4_4:-72097951 Msa0700930:CDS
TGATTGCAAGTTCATTCCTC+AGG 0.492594 4_4:-72101507 Msa0700930:CDS
TCCGTCCTTTACTAGCGTAA+TGG 0.492928 4_4:-72100649 Msa0700930:CDS
CAAATCAGTCTGCTGTTGCC+GGG 0.495892 4_4:+72099572 None:intergenic
ATACACACACATAACAAAGT+TGG 0.497222 4_4:+72097766 None:intergenic
ATTTGTATTCCTGTTAGTCC+CGG 0.500956 4_4:-72099590 Msa0700930:CDS
TGGATGTTGGTCAAGCCAAT+TGG 0.502926 4_4:-72098832 Msa0700930:CDS
GTTACCTTAGTTTCATCAGA+AGG 0.511824 4_4:+72099735 None:intergenic
GATTGTTGCCACAATGAAGC+AGG 0.513141 4_4:-72097929 Msa0700930:CDS
GATAAAGGTGCTAATCTATG+AGG 0.517916 4_4:+72101599 None:intergenic
TTGTTCCATTACTTTGCAGA+AGG 0.519568 4_4:-72102012 Msa0700930:five_prime_UTR
TGTGCATATGTAGTATGTGC+AGG 0.520193 4_4:+72100024 None:intergenic
AATATGTGATCTTGACAAAA+GGG 0.523473 4_4:-72101711 Msa0700930:CDS
TCAACACTTCCATTAATTCG+TGG 0.523749 4_4:-72101884 Msa0700930:CDS
AAATGGTTAAAGAAGTATGC+AGG 0.524010 4_4:-72098755 Msa0700930:CDS
AGTTGTTCTCTGGGAGGTGT+AGG 0.528179 4_4:+72098689 None:intergenic
TCTGGGAGGTGTAGGAGGAA+GGG 0.530338 4_4:+72098697 None:intergenic
AGATCACATATTGGCATCAA+AGG 0.530584 4_4:+72101722 None:intergenic
TTCTGTTGTGGAACATGTGA+AGG 0.532955 4_4:-72097574 Msa0700930:three_prime_UTR
GTTTCCCATTACGCTAGTAA+AGG 0.533694 4_4:+72100644 None:intergenic
CTGGAATCTGTTAATGGAGA+AGG 0.535723 4_4:+72101824 None:intergenic
AACTCTTACAATTCACCGTA+TGG 0.536185 4_4:+72098022 None:intergenic
TAGCACCTTTATCTGAAGGA+AGG 0.536409 4_4:-72101589 Msa0700930:CDS
ATGCAGGTGATCAAGTTGAA+TGG 0.536676 4_4:-72098739 Msa0700930:CDS
GTCAAAAGAATCTGCATACA+TGG 0.537509 4_4:-72097290 Msa0700930:three_prime_UTR
GTTTCACAGCAAATCAGGGT+TGG 0.537857 4_4:-72099821 Msa0700930:CDS
CCCATCACTTTCTTAGCATG+AGG 0.538954 4_4:+72101686 None:intergenic
AACGGTTTCACAGCAAATCA+GGG 0.544637 4_4:-72099825 Msa0700930:CDS
AGATTAGCACCTTTATCTGA+AGG 0.544881 4_4:-72101593 Msa0700930:CDS
ATGAACACTCCAAAACCAAA+AGG 0.547696 4_4:-72099991 Msa0700930:intron
AGGTTACAGTGTGTGTATCA+TGG 0.551337 4_4:-72101551 Msa0700930:CDS
ATTCTTTGTTGGATGAATGA+GGG 0.551696 4_4:-72097478 Msa0700930:three_prime_UTR
TTCACATGTTCCACAACAGA+AGG 0.552489 4_4:+72097576 None:intergenic
CCAGAGAACAACTTATGGAC+AGG 0.552971 4_4:-72098679 Msa0700930:intron
TGGAGATTAATTTCAGCGAA+AGG 0.555282 4_4:+72097786 None:intergenic
GTGAAATGAGGGACCAAAAG+TGG 0.555550 4_4:+72097316 None:intergenic
CGGAATTTGCTAATATTACA+GGG 0.556602 4_4:+72097393 None:intergenic
TGCCACAATGAAGCAGGGTG+TGG 0.560699 4_4:-72097923 Msa0700930:CDS
TGTTCTCTGGGAGGTGTAGG+AGG 0.562948 4_4:+72098692 None:intergenic
ATTGAAGAGTTAGATATCAA+CGG 0.563093 4_4:-72099843 Msa0700930:CDS
ATTCCTCAGGCACCTCCTGA+CGG 0.563702 4_4:-72101494 Msa0700930:CDS
TTGACAAAATTGTACCGCGA+TGG 0.563874 4_4:-72099520 Msa0700930:CDS
ATCAATTTCTGGTATGAATG+GGG 0.563979 4_4:+72100674 None:intergenic
ACCTCATGCTAAGAAAGTGA+TGG 0.565040 4_4:-72101687 Msa0700930:CDS
TACAGTGTGTGTATCATGGT+TGG 0.568463 4_4:-72101547 Msa0700930:CDS
GAAAGGCGTGGTTGTAGTCA+TGG 0.570529 4_4:+72097803 None:intergenic
GAAGGATTGATCAATGGGGT+AGG 0.572052 4_4:-72101571 Msa0700930:CDS
GTATATGCATAAAAGATGCT+TGG 0.572412 4_4:+72099777 None:intergenic
TACCCAAGTACTGTGCAGAA+TGG 0.574247 4_4:-72100759 Msa0700930:CDS
TTGCAGAAGGGAACAAACAA+TGG 0.574838 4_4:-72101999 Msa0700930:exon
CAAGTTCAGAGAAATTTGAC+TGG 0.578841 4_4:-72101760 Msa0700930:CDS
GTGAAAGCTGATAGAGAAGG+AGG 0.578869 4_4:-72099885 Msa0700930:CDS
CCTCATGCTAAGAAAGTGAT+GGG 0.581206 4_4:-72101686 Msa0700930:CDS
CCCATTACGCTAGTAAAGGA+CGG 0.582016 4_4:+72100648 None:intergenic
AATTGATGTTGTTATATGGT+GGG 0.583888 4_4:-72101663 Msa0700930:CDS
AGTACCAATAAAACAAGTAA+CGG 0.587278 4_4:+72097716 None:intergenic
GAATTGATGTTGTTATATGG+TGG 0.587435 4_4:-72101664 Msa0700930:CDS
CATACTACATATGCACACTA+CGG 0.590698 4_4:-72100018 Msa0700930:CDS
GGCAATGTTTGTGCCAACAA+AGG 0.593457 4_4:-72098804 Msa0700930:CDS
TACCATTCTGCACAGTACTT+GGG 0.594856 4_4:+72100757 None:intergenic
CGTGGTTGTAGTCATGGTAA+CGG 0.596317 4_4:+72097809 None:intergenic
GGTTCTGATTGAAAACCTCA+TGG 0.598068 4_4:-72100049 Msa0700930:CDS
GGTCCGTCAGGAGGTGCCTG+AGG 0.603706 4_4:+72101491 None:intergenic
CAGGTTCATCATCCACGTGA+AGG 0.603801 4_4:+72101792 None:intergenic
TATGCATAAAAGATGCTTGG+TGG 0.606284 4_4:+72099780 None:intergenic
TGTTCCATTACTTTGCAGAA+GGG 0.607145 4_4:-72102011 Msa0700930:five_prime_UTR
ATTAATTTCAGCGAAAGGCG+TGG 0.609911 4_4:+72097791 None:intergenic
TCTTCAATTGACAGGTCAAG+TGG 0.615205 4_4:+72099858 None:intergenic
AATACAAAGATATTATTACA+AGG 0.616833 4_4:-72100704 Msa0700930:CDS
AATATTACAGGGACCAAAAG+CGG 0.625604 4_4:+72097404 None:intergenic
AACCACACCCTGCTTCATTG+TGG 0.629575 4_4:+72097921 None:intergenic
GGGATAGAAATGAGAATGCA+TGG 0.630522 4_4:-72101643 Msa0700930:CDS
TGGTCAAGCCAATTGGCAGA+AGG 0.632277 4_4:-72098825 Msa0700930:CDS
TCCATAAGTTGTTCTCTGGG+AGG 0.632920 4_4:+72098683 None:intergenic
TCTGTTGTGGAACATGTGAA+GGG 0.634943 4_4:-72097573 Msa0700930:three_prime_UTR
TGGAAGAATCTGATATTACA+GGG 0.635210 4_4:+72097336 None:intergenic
CTTAGGGATAATGAAACTAG+AGG 0.635581 4_4:+72102074 None:intergenic
CAGTAGTAGTAACCTTCACG+TGG 0.639581 4_4:-72101804 Msa0700930:CDS
TACGTATCTTCTCCATGTTG+AGG 0.640030 4_4:-72099459 Msa0700930:intron
GAACAGGTACTGGAGCCATA+CGG 0.641416 4_4:-72098037 Msa0700930:intron
CTATAAGAGTCTCAATGTGG+TGG 0.643278 4_4:-72097989 Msa0700930:CDS
GTGCATATGTAGTATGTGCA+GGG 0.644617 4_4:+72100025 None:intergenic
TTTCATTCGCGTTGTCACGG+TGG 0.645969 4_4:-72097858 Msa0700930:CDS
TAAAAGAAATTACCTCAACA+TGG 0.650469 4_4:+72099447 None:intergenic
TCAATTTCTGGTATGAATGG+GGG 0.651927 4_4:+72100675 None:intergenic
ACAGTGAAAGCTGATAGAGA+AGG 0.655364 4_4:-72099888 Msa0700930:intron
GGTGATCAAGTTGAATGGAG+AGG 0.656464 4_4:-72098734 Msa0700930:CDS
TAGTATGTGCAGGGTCCATG+AGG 0.657402 4_4:+72100034 None:intergenic
TCACATGTTCCACAACAGAA+GGG 0.659757 4_4:+72097577 None:intergenic
GTTACCGGAGGTCCGTCAGG+AGG 0.667806 4_4:+72101482 None:intergenic
GGAGCGTTGGAACATTTGTG+TGG 0.668212 4_4:-72097688 Msa0700930:three_prime_UTR
TGTTAATGGAGAAGGTGACA+AGG 0.682450 4_4:+72101832 None:intergenic
CTGTTGTGGAACATGTGAAG+GGG 0.699583 4_4:-72097572 Msa0700930:three_prime_UTR
AATTTGACTGGTACTCACAG+TGG 0.710936 4_4:-72101748 Msa0700930:CDS
ATTGTTGCCACAATGAAGCA+GGG 0.715859 4_4:-72097928 Msa0700930:CDS
AGCCTATAAGAGTCTCAATG+TGG 0.722672 4_4:-72097992 Msa0700930:CDS
CTGTGCAGAATGGTATCGTG+TGG 0.742797 4_4:-72100749 Msa0700930:CDS
GAAGGAAGGATTGATCAATG+GGG 0.799393 4_4:-72101575 Msa0700930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTGATTTTTGAAAT+GGG + chr4_4:72097457-72097476 None:intergenic 10.0%
!!! AAAAATATTGATTTTTGAAA+TGG + chr4_4:72097458-72097477 None:intergenic 10.0%
!! AAAACAAATAAAAATTCAAA+GGG + chr4_4:72099102-72099121 None:intergenic 10.0%
!! TAAAACAAATAAAAATTCAA+AGG + chr4_4:72099103-72099122 None:intergenic 10.0%
!! TAAAAATACCTTTATATAAA+AGG - chr4_4:72099157-72099176 Msa0700930:intron 10.0%
!!! TAAATGAATAATTTTTTAAC+AGG - chr4_4:72099187-72099206 Msa0700930:intron 10.0%
!!! TTTTATAATATACAAATCAT+TGG - chr4_4:72099949-72099968 Msa0700930:intron 10.0%
!!! TTTTATATTTGACAAATTTT+AGG + chr4_4:72101274-72101293 None:intergenic 10.0%
!! AAAAAATTATTAATTGCATT+TGG - chr4_4:72101313-72101332 Msa0700930:intron 10.0%
!!! AAATCTAATTTTTTTTTACA+GGG + chr4_4:72102019-72102038 None:intergenic 10.0%
!!! AAAATCTAATTTTTTTTTAC+AGG + chr4_4:72102020-72102039 None:intergenic 10.0%
!! TCCATATATTCAATTATTAT+CGG + chr4_4:72098306-72098325 None:intergenic 15.0%
!! AATACAAAGATATTATTACA+AGG - chr4_4:72098674-72098693 Msa0700930:intron 15.0%
!!! CATTTTTCATAATATAAGTA+AGG + chr4_4:72099687-72099706 None:intergenic 15.0%
!! TTGATAGGAAAAAAAAATAA+TGG - chr4_4:72100526-72100545 Msa0700930:intron 15.0%
!!! AAACATTTTAAAGTAAAAAC+AGG + chr4_4:72101121-72101140 None:intergenic 15.0%
!!! TTAAAATGTTTTAGTTTTGT+CGG - chr4_4:72101130-72101149 Msa0700930:intron 15.0%
!! TGTTGATATTTATTATACTT+TGG - chr4_4:72101944-72101963 Msa0700930:CDS 15.0%
!! GTTGATATTTATTATACTTT+GGG - chr4_4:72101945-72101964 Msa0700930:CDS 15.0%
!!! ATGTTAAATGATTTAGCTTA+GGG + chr4_4:72097323-72097342 None:intergenic 20.0%
!!! AATGTTAAATGATTTAGCTT+AGG + chr4_4:72097324-72097343 None:intergenic 20.0%
!! ACCGATAATAATTGAATATA+TGG - chr4_4:72098302-72098321 Msa0700930:intron 20.0%
!! GTAATAATATCTTTGTATTG+AGG + chr4_4:72098673-72098692 None:intergenic 20.0%
!! ATTTAACTCGTAATTTCTTA+GGG + chr4_4:72099037-72099056 None:intergenic 20.0%
!! TATTTAACTCGTAATTTCTT+AGG + chr4_4:72099038-72099057 None:intergenic 20.0%
!! AAATACCTTTATATAAAAGG+TGG - chr4_4:72099160-72099179 Msa0700930:intron 20.0%
!!! TAAAAGATCTGTGATTTTAT+AGG - chr4_4:72099219-72099238 Msa0700930:intron 20.0%
!!! AAAAGATCTGTGATTTTATA+GGG - chr4_4:72099220-72099239 Msa0700930:intron 20.0%
!! GTGTCATATATAAAACAAAT+AGG + chr4_4:72099450-72099469 None:intergenic 20.0%
!!! TGGATAATATTTTTCTTCAA+CGG + chr4_4:72100019-72100038 None:intergenic 20.0%
!! GATATAATTACTAAAATGCT+TGG - chr4_4:72100160-72100179 Msa0700930:intron 20.0%
!!! GAAAAAAAAATAATGGATGT+TGG - chr4_4:72100533-72100552 Msa0700930:intron 20.0%
!! CTTAAAACTTCACATATTAA+AGG + chr4_4:72100796-72100815 None:intergenic 20.0%
!!! AATATGTGAAGTTTTAAGTA+TGG - chr4_4:72100798-72100817 Msa0700930:intron 20.0%
!! CATTAGGAATTCAAATTAAA+TGG + chr4_4:72101754-72101773 None:intergenic 20.0%
!! AACAAAGAATATAGGAATTT+GGG + chr4_4:72101890-72101909 None:intergenic 20.0%
! AATATGTGATCTTGACAAAA+GGG - chr4_4:72097667-72097686 Msa0700930:three_prime_UTR 25.0%
! AATTGATGTTGTTATATGGT+GGG - chr4_4:72097715-72097734 Msa0700930:three_prime_UTR 25.0%
! ATAACTTAACAATTGAATGC+AGG - chr4_4:72097998-72098017 Msa0700930:CDS 25.0%
! AATGCAGGAATATAATTAGA+TGG - chr4_4:72098013-72098032 Msa0700930:CDS 25.0%
! AATGAGATAACAAATAACTC+AGG - chr4_4:72098036-72098055 Msa0700930:intron 25.0%
! ATGAGATAACAAATAACTCA+GGG - chr4_4:72098037-72098056 Msa0700930:intron 25.0%
!!! TTGTTTTGATGCATTTACTT+TGG - chr4_4:72098545-72098564 Msa0700930:intron 25.0%
!! TTTCTTTTGTAGAACTCTAA+TGG - chr4_4:72098805-72098824 Msa0700930:CDS 25.0%
!! TTCTTTTGTAGAACTCTAAT+GGG - chr4_4:72098806-72098825 Msa0700930:CDS 25.0%
!! GTCATTGATAATTGATTGAT+AGG - chr4_4:72098925-72098944 Msa0700930:intron 25.0%
!!! AAGCAAATACTATGGTTTTT+TGG + chr4_4:72099264-72099283 None:intergenic 25.0%
! AAAAAACCATAGTATTTGCT+TGG - chr4_4:72099263-72099282 Msa0700930:intron 25.0%
! AATATACCAAGCAAATACTA+TGG + chr4_4:72099272-72099291 None:intergenic 25.0%
! TTTGTTGAATATGCAATTTC+AGG - chr4_4:72099301-72099320 Msa0700930:intron 25.0%
!! TATCATATATGCATACCTTT+TGG + chr4_4:72099405-72099424 None:intergenic 25.0%
! ATTGAAGAGTTAGATATCAA+CGG - chr4_4:72099535-72099554 Msa0700930:CDS 25.0%
!! AATGTGCAACAAATTTTATG+TGG - chr4_4:72099703-72099722 Msa0700930:intron 25.0%
!! ATGTGCAACAAATTTTATGT+GGG - chr4_4:72099704-72099723 Msa0700930:intron 25.0%
!! TTTTCATGTTAGACAAAACT+TGG - chr4_4:72099883-72099902 Msa0700930:CDS 25.0%
! TAAAAGAAATTACCTCAACA+TGG + chr4_4:72099934-72099953 None:intergenic 25.0%
! ATATTGTTATGTAACAGTAC+TGG + chr4_4:72100039-72100058 None:intergenic 25.0%
! TTTCTTCTGCTTACTTTATT+CGG - chr4_4:72100098-72100117 Msa0700930:intron 25.0%
! CTTCTTGAATTATGAAAGAT+TGG - chr4_4:72100275-72100294 Msa0700930:intron 25.0%
!!! TTGTGATTGGTTTTAGAAAA+TGG - chr4_4:72100606-72100625 Msa0700930:intron 25.0%
! GTCAATTCAAATAAGAAAAG+TGG + chr4_4:72101027-72101046 None:intergenic 25.0%
!!! CTTTTGACTTGAATTTTGAA+TGG - chr4_4:72101046-72101065 Msa0700930:intron 25.0%
! AAATTCTTCACTTCAAATCA+CGG + chr4_4:72101232-72101251 None:intergenic 25.0%
! AGTACCAATAAAACAAGTAA+CGG + chr4_4:72101665-72101684 None:intergenic 25.0%
!!! TTGTTTTATTGGTACTTAAG+AGG - chr4_4:72101669-72101688 Msa0700930:CDS 25.0%
! CAACAAAGAATATAGGAATT+TGG + chr4_4:72101891-72101910 None:intergenic 25.0%
! CAAATTCCTATATTCTTTGT+TGG - chr4_4:72101889-72101908 Msa0700930:CDS 25.0%
! ATTCATCCAACAAAGAATAT+AGG + chr4_4:72101898-72101917 None:intergenic 25.0%
!! AATATCAACATCTCTAGAAA+AGG + chr4_4:72101934-72101953 None:intergenic 25.0%
AATGGAACAAGAGAAAAAAG+TGG + chr4_4:72097356-72097375 None:intergenic 30.0%
!!! GATTTTTGAAATGGGATATG+TGG + chr4_4:72097449-72097468 None:intergenic 30.0%
! CTTTTGTCAAGATCACATAT+TGG + chr4_4:72097668-72097687 None:intergenic 30.0%
CAATATGTGATCTTGACAAA+AGG - chr4_4:72097666-72097685 Msa0700930:three_prime_UTR 30.0%
TGGGAATTGATGTTGTTATA+TGG - chr4_4:72097711-72097730 Msa0700930:three_prime_UTR 30.0%
GAATTGATGTTGTTATATGG+TGG - chr4_4:72097714-72097733 Msa0700930:three_prime_UTR 30.0%
!! TATCATGGTTGGTGTTTTAA+TGG - chr4_4:72097842-72097861 Msa0700930:CDS 30.0%
!! GATGTTTTATTGCTATTACG+TGG - chr4_4:72098171-72098190 Msa0700930:intron 30.0%
ATTGGATTTGATGTTTGTGT+CGG + chr4_4:72098262-72098281 None:intergenic 30.0%
!! GTTTTCCATATTTGAAGTGT+CGG - chr4_4:72098377-72098396 Msa0700930:intron 30.0%
TACAAATCTAAACGTGTTCT+CGG + chr4_4:72098413-72098432 None:intergenic 30.0%
TTGTATTGAGGATCAGTATT+TGG + chr4_4:72098661-72098680 None:intergenic 30.0%
!! ATCAATTTCTGGTATGAATG+GGG + chr4_4:72098707-72098726 None:intergenic 30.0%
!! CATCAATTTCTGGTATGAAT+GGG + chr4_4:72098708-72098727 None:intergenic 30.0%
!! TCATCAATTTCTGGTATGAA+TGG + chr4_4:72098709-72098728 None:intergenic 30.0%
GAAACAGAGATATTGCTTAT+GGG - chr4_4:72098752-72098771 Msa0700930:CDS 30.0%
AACTCAAACACATCTGTATA+TGG - chr4_4:72098877-72098896 Msa0700930:intron 30.0%
! AGTCTCCACCTTTTATATAA+AGG + chr4_4:72099168-72099187 None:intergenic 30.0%
! AATATGCAATTTCAGGTATG+AGG - chr4_4:72099308-72099327 Msa0700930:intron 30.0%
!!! ATATGCATACCTTTTGGTTT+TGG + chr4_4:72099399-72099418 None:intergenic 30.0%
TATCTAACTCTTCAATTGAC+AGG + chr4_4:72099531-72099550 None:intergenic 30.0%
GTATATGCATAAAAGATGCT+TGG + chr4_4:72099604-72099623 None:intergenic 30.0%
! AGTTCAGAAGAAATTTGCTT+TGG - chr4_4:72099760-72099779 Msa0700930:CDS 30.0%
!! GCGTAATTGATTTTTCATAC+CGG - chr4_4:72100252-72100271 Msa0700930:intron 30.0%
TCTTTCATAATTCAAGAAGC+CGG + chr4_4:72100274-72100293 None:intergenic 30.0%
!! CATCCATTTTTCTTAGTCTT+GGG - chr4_4:72100342-72100361 Msa0700930:intron 30.0%
TCAACAATTCGACCAAAATA+AGG + chr4_4:72100421-72100440 None:intergenic 30.0%
! AAATGGTTAAAGAAGTATGC+AGG - chr4_4:72100623-72100642 Msa0700930:intron 30.0%
CATGTGATTGCATTTAAACA+TGG - chr4_4:72100729-72100748 Msa0700930:CDS 30.0%
ATACGATTCACATGTATAGT+AGG + chr4_4:72100834-72100853 None:intergenic 30.0%
ATTGCATTTGGTATTTGAAC+AGG - chr4_4:72101325-72101344 Msa0700930:intron 30.0%
AGCTACAACAAGAAATTCAA+TGG - chr4_4:72101482-72101501 Msa0700930:intron 30.0%
AAGAAATTCAATGGTTGTGT+TGG - chr4_4:72101491-72101510 Msa0700930:CDS 30.0%
ATACACACACATAACAAAGT+TGG + chr4_4:72101615-72101634 None:intergenic 30.0%
!!! AAAGCCGTTACTTGTTTTAT+TGG - chr4_4:72101658-72101677 Msa0700930:CDS 30.0%
TATAGCAAGATGTTAGCATT+AGG + chr4_4:72101770-72101789 None:intergenic 30.0%
TATTCTTTGTTGGATGAATG+AGG - chr4_4:72101899-72101918 Msa0700930:CDS 30.0%
ATTCTTTGTTGGATGAATGA+GGG - chr4_4:72101900-72101919 Msa0700930:CDS 30.0%
!! CGGAATTTGCTAATATTACA+GGG + chr4_4:72101988-72102007 None:intergenic 30.0%
CCTGTAATATTAGCAAATTC+CGG - chr4_4:72101986-72102005 Msa0700930:exon 30.0%
!!! TTTTTTACAGGGACTAAAAC+CGG + chr4_4:72102008-72102027 None:intergenic 30.0%
TGGAAGAATCTGATATTACA+GGG + chr4_4:72102045-72102064 None:intergenic 30.0%
! ATATCAGATTCTTCCACTTT+TGG - chr4_4:72102049-72102068 Msa0700930:five_prime_UTR 30.0%
CTTAGGGATAATGAAACTAG+AGG + chr4_4:72097307-72097326 None:intergenic 35.0%
TTGTTCCATTACTTTGCAGA+AGG - chr4_4:72097366-72097385 Msa0700930:three_prime_UTR 35.0%
TGTTCCATTACTTTGCAGAA+GGG - chr4_4:72097367-72097386 Msa0700930:three_prime_UTR 35.0%
ATATGTGGTTCAAGTGCTAT+TGG + chr4_4:72097434-72097453 None:intergenic 35.0%
TCAACACTTCCATTAATTCG+TGG - chr4_4:72097494-72097513 Msa0700930:three_prime_UTR 35.0%
CAACACTTCCATTAATTCGT+GGG - chr4_4:72097495-72097514 Msa0700930:three_prime_UTR 35.0%
CTACTACTGGAATCTGTTAA+TGG + chr4_4:72097563-72097582 None:intergenic 35.0%
! TCTGAACTTGTTTCATCTTC+AGG + chr4_4:72097608-72097627 None:intergenic 35.0%
CAAGTTCAGAGAAATTTGAC+TGG - chr4_4:72097618-72097637 Msa0700930:three_prime_UTR 35.0%
AGATCACATATTGGCATCAA+AGG + chr4_4:72097659-72097678 None:intergenic 35.0%
!! GATAAAGGTGCTAATCTATG+AGG + chr4_4:72097782-72097801 None:intergenic 35.0%
AGATTAGCACCTTTATCTGA+AGG - chr4_4:72097785-72097804 Msa0700930:exon 35.0%
TCAATCCTTCCTTCAGATAA+AGG + chr4_4:72097797-72097816 None:intergenic 35.0%
TGAAGGAAGGATTGATCAAT+GGG - chr4_4:72097802-72097821 Msa0700930:CDS 35.0%
!! CAAATAACTCAGGGTATTGT+AGG - chr4_4:72098046-72098065 Msa0700930:intron 35.0%
TTCTTTCCTTGTGTAGCTAA+TGG - chr4_4:72098219-72098238 Msa0700930:intron 35.0%
CTGAATGTAACTACATGTGT+CGG - chr4_4:72098330-72098349 Msa0700930:intron 35.0%
GCAACTAGACGAAATTTAGT+TGG + chr4_4:72098443-72098462 None:intergenic 35.0%
!! TCAATTTCTGGTATGAATGG+GGG + chr4_4:72098706-72098725 None:intergenic 35.0%
GGAAACAGAGATATTGCTTA+TGG - chr4_4:72098751-72098770 Msa0700930:CDS 35.0%
AACATGCAAGTTACGATCAT+GGG + chr4_4:72099011-72099030 None:intergenic 35.0%
TAACATGCAAGTTACGATCA+TGG + chr4_4:72099012-72099031 None:intergenic 35.0%
CATACTACATATGCACACTA+CGG - chr4_4:72099360-72099379 Msa0700930:intron 35.0%
ATGAACACTCCAAAACCAAA+AGG - chr4_4:72099387-72099406 Msa0700930:intron 35.0%
TATGCATAAAAGATGCTTGG+TGG + chr4_4:72099601-72099620 None:intergenic 35.0%
! TCAGAAGGTGCAAGTTTATT+TGG + chr4_4:72099631-72099650 None:intergenic 35.0%
GTTACCTTAGTTTCATCAGA+AGG + chr4_4:72099646-72099665 None:intergenic 35.0%
ATTTGTATTCCTGTTAGTCC+CGG - chr4_4:72099788-72099807 Msa0700930:CDS 35.0%
CTAACATGAAAAATCCATCG+CGG + chr4_4:72099875-72099894 None:intergenic 35.0%
GATTGAACCAACAAATCAAC+AGG + chr4_4:72099976-72099995 None:intergenic 35.0%
CCAAGACTAAGAAAAATGGA+TGG + chr4_4:72100344-72100363 None:intergenic 35.0%
!! CCATCCATTTTTCTTAGTCT+TGG - chr4_4:72100341-72100360 Msa0700930:intron 35.0%
TCACCCAAGACTAAGAAAAA+TGG + chr4_4:72100348-72100367 None:intergenic 35.0%
!!! GTGAGCAATAGTACTTTTTC+AGG - chr4_4:72100364-72100383 Msa0700930:intron 35.0%
!! TCGTGTTTCCTACCTTATTT+TGG - chr4_4:72100406-72100425 Msa0700930:intron 35.0%
CAATTCGACCAAAATAAGGT+AGG + chr4_4:72100417-72100436 None:intergenic 35.0%
GAATGGAGAGGAAAATATAG+TGG - chr4_4:72100656-72100675 Msa0700930:CDS 35.0%
! TCGCTAGTGCATATCTATTT+TGG - chr4_4:72100891-72100910 Msa0700930:intron 35.0%
! TGTCGTCAATTTTGTATAGC+TGG - chr4_4:72101001-72101020 Msa0700930:intron 35.0%
TTTGGTATTTGAACAGGTAC+TGG - chr4_4:72101331-72101350 Msa0700930:intron 35.0%
AACTCTTACAATTCACCGTA+TGG + chr4_4:72101359-72101378 None:intergenic 35.0%
ATCATATCAGTTGCTTCAGT+TGG - chr4_4:72101426-72101445 Msa0700930:intron 35.0%
TCATATCAGTTGCTTCAGTT+GGG - chr4_4:72101427-72101446 Msa0700930:intron 35.0%
TGGAGATTAATTTCAGCGAA+AGG + chr4_4:72101595-72101614 None:intergenic 35.0%
! AATTGTTTTCCCTTCTGTTG+TGG - chr4_4:72101792-72101811 Msa0700930:CDS 35.0%
TTGGAAAAATCATGCAGATG+AGG - chr4_4:72101845-72101864 Msa0700930:CDS 35.0%
AATATTACAGGGACCAAAAG+CGG + chr4_4:72101977-72101996 None:intergenic 35.0%
!! CCGGAATTTGCTAATATTAC+AGG + chr4_4:72101989-72102008 None:intergenic 35.0%
GTGGAAGAATCTGATATTAC+AGG + chr4_4:72102046-72102065 None:intergenic 35.0%
GTCAAAAGAATCTGCATACA+TGG - chr4_4:72102088-72102107 Msa0700930:five_prime_UTR 35.0%
GATAATGAAACTAGAGGCTC+AGG + chr4_4:72097301-72097320 None:intergenic 40.0%
TGTTCCCTTCTGCAAAGTAA+TGG + chr4_4:72097374-72097393 None:intergenic 40.0%
TTGCAGAAGGGAACAAACAA+TGG - chr4_4:72097379-72097398 Msa0700930:three_prime_UTR 40.0%
! GAAGTGTTCCCACGAATTAA+TGG + chr4_4:72097506-72097525 None:intergenic 40.0%
TGTTAATGGAGAAGGTGACA+AGG + chr4_4:72097549-72097568 None:intergenic 40.0%
CTGGAATCTGTTAATGGAGA+AGG + chr4_4:72097557-72097576 None:intergenic 40.0%
AATTTGACTGGTACTCACAG+TGG - chr4_4:72097630-72097649 Msa0700930:three_prime_UTR 40.0%
ACCTCATGCTAAGAAAGTGA+TGG - chr4_4:72097691-72097710 Msa0700930:three_prime_UTR 40.0%
CCTCATGCTAAGAAAGTGAT+GGG - chr4_4:72097692-72097711 Msa0700930:three_prime_UTR 40.0%
GGGATAGAAATGAGAATGCA+TGG - chr4_4:72097735-72097754 Msa0700930:three_prime_UTR 40.0%
TAGCACCTTTATCTGAAGGA+AGG - chr4_4:72097789-72097808 Msa0700930:exon 40.0%
CTGAAGGAAGGATTGATCAA+TGG - chr4_4:72097801-72097820 Msa0700930:CDS 40.0%
GAAGGAAGGATTGATCAATG+GGG - chr4_4:72097803-72097822 Msa0700930:CDS 40.0%
AGGTTACAGTGTGTGTATCA+TGG - chr4_4:72097827-72097846 Msa0700930:CDS 40.0%
TACAGTGTGTGTATCATGGT+TGG - chr4_4:72097831-72097850 Msa0700930:CDS 40.0%
!!! GGTTGGTGTTTTAATGGATC+AGG - chr4_4:72097848-72097867 Msa0700930:CDS 40.0%
TGATTGCAAGTTCATTCCTC+AGG - chr4_4:72097871-72097890 Msa0700930:CDS 40.0%
TTCTGTCCATTAGCTACACA+AGG + chr4_4:72098228-72098247 None:intergenic 40.0%
CAGCATGTAAGTGTCAGTAT+TGG + chr4_4:72098280-72098299 None:intergenic 40.0%
!! TAGCACCGACACTTCAAATA+TGG + chr4_4:72098385-72098404 None:intergenic 40.0%
!!! AGCAGCTACACATGCTTTTT+TGG + chr4_4:72098599-72098618 None:intergenic 40.0%
TACCATTCTGCACAGTACTT+GGG + chr4_4:72098624-72098643 None:intergenic 40.0%
ATACCATTCTGCACAGTACT+TGG + chr4_4:72098625-72098644 None:intergenic 40.0%
! AGAATGGTATCGTGTGGTTT+TGG - chr4_4:72098635-72098654 Msa0700930:intron 40.0%
AAGGACGGATCATCAATTTC+TGG + chr4_4:72098718-72098737 None:intergenic 40.0%
GTTTCCCATTACGCTAGTAA+AGG + chr4_4:72098737-72098756 None:intergenic 40.0%
CTCCACATTTGACAAAAGCA+TGG - chr4_4:72099125-72099144 Msa0700930:intron 40.0%
! CACCATGCTTTTGTCAAATG+TGG + chr4_4:72099130-72099149 None:intergenic 40.0%
! GGTTCTGATTGAAAACCTCA+TGG - chr4_4:72099329-72099348 Msa0700930:intron 40.0%
GTGCATATGTAGTATGTGCA+GGG + chr4_4:72099356-72099375 None:intergenic 40.0%
TGTGCATATGTAGTATGTGC+AGG + chr4_4:72099357-72099376 None:intergenic 40.0%
ACAGTGAAAGCTGATAGAGA+AGG - chr4_4:72099490-72099509 Msa0700930:CDS 40.0%
TCTTCAATTGACAGGTCAAG+TGG + chr4_4:72099523-72099542 None:intergenic 40.0%
AACGGTTTCACAGCAAATCA+GGG - chr4_4:72099553-72099572 Msa0700930:CDS 40.0%
TGCACCTTCTGATGAAACTA+AGG - chr4_4:72099639-72099658 Msa0700930:intron 40.0%
TTGACAAAATTGTACCGCGA+TGG - chr4_4:72099858-72099877 Msa0700930:CDS 40.0%
TACGTATCTTCTCCATGTTG+AGG - chr4_4:72099919-72099938 Msa0700930:intron 40.0%
!! CATTGGTCCTGTTGATTTGT+TGG - chr4_4:72099966-72099985 Msa0700930:intron 40.0%
TTATGTGCACAATAGCTGCT+CGG - chr4_4:72100186-72100205 Msa0700930:intron 40.0%
AAACATTGCCTTCTGCCAAT+TGG + chr4_4:72100564-72100583 None:intergenic 40.0%
!! ATGCAGGTGATCAAGTTGAA+TGG - chr4_4:72100639-72100658 Msa0700930:CDS 40.0%
CTGTCCATAAGTTGTTCTCT+GGG + chr4_4:72100701-72100720 None:intergenic 40.0%
GAATCACTACCTAGTGTAGT+CGG - chr4_4:72100970-72100989 Msa0700930:intron 40.0%
AAAAAGAAGCCGACTACACT+AGG + chr4_4:72100982-72101001 None:intergenic 40.0%
AGCCTATAAGAGTCTCAATG+TGG - chr4_4:72101386-72101405 Msa0700930:intron 40.0%
CACCACATTGAGACTCTTAT+AGG + chr4_4:72101391-72101410 None:intergenic 40.0%
CTATAAGAGTCTCAATGTGG+TGG - chr4_4:72101389-72101408 Msa0700930:intron 40.0%
ATTGTTGCCACAATGAAGCA+GGG - chr4_4:72101450-72101469 Msa0700930:intron 40.0%
ATTAATTTCAGCGAAAGGCG+TGG + chr4_4:72101590-72101609 None:intergenic 40.0%
TCACATGTTCCACAACAGAA+GGG + chr4_4:72101804-72101823 None:intergenic 40.0%
TTCACATGTTCCACAACAGA+AGG + chr4_4:72101805-72101824 None:intergenic 40.0%
TTCTGTTGTGGAACATGTGA+AGG - chr4_4:72101804-72101823 Msa0700930:CDS 40.0%
TCTGTTGTGGAACATGTGAA+GGG - chr4_4:72101805-72101824 Msa0700930:CDS 40.0%
!! GGGATGTATGTTGCTTTGTT+TGG - chr4_4:72101826-72101845 Msa0700930:CDS 40.0%
!! CTTTGGGTTAATACCGCTTT+TGG - chr4_4:72101961-72101980 Msa0700930:CDS 40.0%
! CTTTTGACGTGGTGAAATGA+GGG + chr4_4:72102076-72102095 None:intergenic 40.0%
! TCTTTTGACGTGGTGAAATG+AGG + chr4_4:72102077-72102096 None:intergenic 40.0%
! GTATGCAGATTCTTTTGACG+TGG + chr4_4:72102087-72102106 None:intergenic 40.0%
CACGTGAAGGTTACTACTAC+TGG + chr4_4:72097576-72097595 None:intergenic 45.0%
CAGTAGTAGTAACCTTCACG+TGG - chr4_4:72097574-72097593 Msa0700930:three_prime_UTR 45.0%
CCCATCACTTTCTTAGCATG+AGG + chr4_4:72097695-72097714 None:intergenic 45.0%
GAAGGATTGATCAATGGGGT+AGG - chr4_4:72097807-72097826 Msa0700930:CDS 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG + chr4_4:72098251-72098270 None:intergenic 45.0%
! TACCCAAGTACTGTGCAGAA+TGG - chr4_4:72098619-72098638 Msa0700930:intron 45.0%
TCCGTCCTTTACTAGCGTAA+TGG - chr4_4:72098729-72098748 Msa0700930:CDS 45.0%
CCCATTACGCTAGTAAAGGA+CGG + chr4_4:72098733-72098752 None:intergenic 45.0%
CCGTCCTTTACTAGCGTAAT+GGG - chr4_4:72098730-72098749 Msa0700930:CDS 45.0%
GTGAAAGCTGATAGAGAAGG+AGG - chr4_4:72099493-72099512 Msa0700930:CDS 45.0%
CAACGGTTTCACAGCAAATC+AGG - chr4_4:72099552-72099571 Msa0700930:CDS 45.0%
GTTTCACAGCAAATCAGGGT+TGG - chr4_4:72099557-72099576 Msa0700930:CDS 45.0%
TGGTGCTTCCCAAGAAACTT+TGG - chr4_4:72099827-72099846 Msa0700930:CDS 45.0%
GGTGCTTCCCAAGAAACTTT+GGG - chr4_4:72099828-72099847 Msa0700930:CDS 45.0%
TCCACAGCCCAAAGTTTCTT+GGG + chr4_4:72099838-72099857 None:intergenic 45.0%
ATCCACAGCCCAAAGTTTCT+TGG + chr4_4:72099839-72099858 None:intergenic 45.0%
TGGATGTTGGTCAAGCCAAT+TGG - chr4_4:72100546-72100565 Msa0700930:intron 45.0%
GGCAATGTTTGTGCCAACAA+AGG - chr4_4:72100574-72100593 Msa0700930:intron 45.0%
!! ACAAGAGCATCTGCCTTTGT+TGG + chr4_4:72100590-72100609 None:intergenic 45.0%
AAGGCAGATGCTCTTGTGAT+TGG - chr4_4:72100593-72100612 Msa0700930:intron 45.0%
!! GGTGATCAAGTTGAATGGAG+AGG - chr4_4:72100644-72100663 Msa0700930:CDS 45.0%
ACCTCCCAGAGAACAACTTA+TGG - chr4_4:72100694-72100713 Msa0700930:CDS 45.0%
TCCATAAGTTGTTCTCTGGG+AGG + chr4_4:72100698-72100717 None:intergenic 45.0%
CCTGTCCATAAGTTGTTCTC+TGG + chr4_4:72100702-72100721 None:intergenic 45.0%
CCAGAGAACAACTTATGGAC+AGG - chr4_4:72100699-72100718 Msa0700930:CDS 45.0%
GATTGTTGCCACAATGAAGC+AGG - chr4_4:72101449-72101468 Msa0700930:intron 45.0%
TGCTTTCATTCGCGTTGTCA+CGG - chr4_4:72101517-72101536 Msa0700930:CDS 45.0%
CGTGGTTGTAGTCATGGTAA+CGG + chr4_4:72101572-72101591 None:intergenic 45.0%
! TTGGTACTTAAGAGGAGCGT+TGG - chr4_4:72101677-72101696 Msa0700930:CDS 45.0%
CTGTTGTGGAACATGTGAAG+GGG - chr4_4:72101806-72101825 Msa0700930:CDS 45.0%
GTGAAATGAGGGACCAAAAG+TGG + chr4_4:72102065-72102084 None:intergenic 45.0%
!!! AAAGTTTTTTTTTTAATAAA+AGG + chr4_4:72100313-72100332 None:intergenic 5.0%
!! ATTAAAAAAAAAACTTTAAT+AGG - chr4_4:72100316-72100335 Msa0700930:intron 5.0%
!!! TTTTAATTATTTATTTTGAT+AGG - chr4_4:72100511-72100530 Msa0700930:intron 5.0%
CAGGTTCATCATCCACGTGA+AGG + chr4_4:72097589-72097608 None:intergenic 50.0%
GACTCGAAGGGAGTAGTTAC+CGG + chr4_4:72097914-72097933 None:intergenic 50.0%
GTCTTCGAAAGCGACTCGAA+GGG + chr4_4:72097926-72097945 None:intergenic 50.0%
TGTCTTCGAAAGCGACTCGA+AGG + chr4_4:72097927-72097946 None:intergenic 50.0%
CTGTGCAGAATGGTATCGTG+TGG - chr4_4:72098629-72098648 Msa0700930:intron 50.0%
TAGTATGTGCAGGGTCCATG+AGG + chr4_4:72099347-72099366 None:intergenic 50.0%
CAAATCAGTCTGCTGTTGCC+GGG + chr4_4:72099809-72099828 None:intergenic 50.0%
CCAAATCAGTCTGCTGTTGC+CGG + chr4_4:72099810-72099829 None:intergenic 50.0%
TCCCAAGAAACTTTGGGCTG+TGG - chr4_4:72099834-72099853 Msa0700930:CDS 50.0%
TGGTCAAGCCAATTGGCAGA+AGG - chr4_4:72100553-72100572 Msa0700930:intron 50.0%
! AGTTGTTCTCTGGGAGGTGT+AGG + chr4_4:72100692-72100711 None:intergenic 50.0%
!! GAACAGGTACTGGAGCCATA+CGG - chr4_4:72101341-72101360 Msa0700930:intron 50.0%
AACCACACCCTGCTTCATTG+TGG + chr4_4:72101460-72101479 None:intergenic 50.0%
TTTCATTCGCGTTGTCACGG+TGG - chr4_4:72101520-72101539 Msa0700930:CDS 50.0%
! GAAAGGCGTGGTTGTAGTCA+TGG + chr4_4:72101578-72101597 None:intergenic 50.0%
!! GGAGCGTTGGAACATTTGTG+TGG - chr4_4:72101690-72101709 Msa0700930:CDS 50.0%
ATTCCTCAGGCACCTCCTGA+CGG - chr4_4:72097884-72097903 Msa0700930:CDS 55.0%
TCGAAGGGAGTAGTTACCGG+AGG + chr4_4:72097911-72097930 None:intergenic 55.0%
CCGGCAACAGCAGACTGATT+TGG - chr4_4:72099807-72099826 Msa0700930:CDS 55.0%
GTGCACAATAGCTGCTCGGT+TGG - chr4_4:72100190-72100209 Msa0700930:intron 55.0%
! TCTGGGAGGTGTAGGAGGAA+GGG + chr4_4:72100684-72100703 None:intergenic 55.0%
! TGTTCTCTGGGAGGTGTAGG+AGG + chr4_4:72100689-72100708 None:intergenic 55.0%
TGCCACAATGAAGCAGGGTG+TGG - chr4_4:72101455-72101474 Msa0700930:intron 55.0%
GTAGTTACCGGAGGTCCGTC+AGG + chr4_4:72097902-72097921 None:intergenic 60.0%
CTGCTGTTGCCGGGACTAAC+AGG + chr4_4:72099800-72099819 None:intergenic 60.0%
! CTCTGGGAGGTGTAGGAGGA+AGG + chr4_4:72100685-72100704 None:intergenic 60.0%
GTTACCGGAGGTCCGTCAGG+AGG + chr4_4:72097899-72097918 None:intergenic 65.0%
!! GGTCCGTCAGGAGGTGCCTG+AGG + chr4_4:72097890-72097909 None:intergenic 70.0%
! GGCACCTCCTGACGGACCTC+CGG - chr4_4:72097892-72097911 Msa0700930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72097285 72102115 72097285 ID=Msa0700930;Name=Msa0700930
chr4_4 mRNA 72097285 72102115 72097285 ID=Msa0700930-mRNA-1;Parent=Msa0700930;Name=Msa0700930-mRNA-1;_AED=0.32;_eAED=0.32;_QI=113|1|1|1|1|1|7|513|529
chr4_4 exon 72097285 72098053 72097285 ID=Msa0700930-mRNA-1:exon:22049;Parent=Msa0700930-mRNA-1
chr4_4 exon 72098680 72098867 72098680 ID=Msa0700930-mRNA-1:exon:22048;Parent=Msa0700930-mRNA-1
chr4_4 exon 72099460 72099648 72099460 ID=Msa0700930-mRNA-1:exon:22047;Parent=Msa0700930-mRNA-1
chr4_4 exon 72099740 72099906 72099740 ID=Msa0700930-mRNA-1:exon:22046;Parent=Msa0700930-mRNA-1
chr4_4 exon 72099992 72100077 72099992 ID=Msa0700930-mRNA-1:exon:22045;Parent=Msa0700930-mRNA-1
chr4_4 exon 72100627 72100814 72100627 ID=Msa0700930-mRNA-1:exon:22044;Parent=Msa0700930-mRNA-1
chr4_4 exon 72101487 72102115 72101487 ID=Msa0700930-mRNA-1:exon:22043;Parent=Msa0700930-mRNA-1
chr4_4 five_prime_UTR 72102003 72102115 72102003 ID=Msa0700930-mRNA-1:five_prime_utr;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72101487 72102002 72101487 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72100627 72100814 72100627 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72099992 72100077 72099992 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72099740 72099906 72099740 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72099460 72099648 72099460 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72098680 72098867 72098680 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 CDS 72097798 72098053 72097798 ID=Msa0700930-mRNA-1:cds;Parent=Msa0700930-mRNA-1
chr4_4 three_prime_UTR 72097285 72097797 72097285 ID=Msa0700930-mRNA-1:three_prime_utr;Parent=Msa0700930-mRNA-1
Gene Sequence

>Msa0700930

ATGGAAGCTTTTTCTGTTAGTTCACTTCACATACCAATAGCACTTGAACCACATATCCCATTTCAAAAATCAATATTTTTGAACTCACAATTGCATTCAACACTTCCATTAATTCGTGGGAACACTTCAAAATTCAAGCTTTTCACTGCCTTGTCACCTTCTCCATTAACAGATTCCAGTAGTAGTAACCTTCACGTGGATGATGAACCTGAAGATGAAACAAGTTCAGAGAAATTTGACTGGTACTCACAGTGGTATCCTTTGATGCCAATATGTGATCTTGACAAAAGGGCACCTCATGCTAAGAAAGTGATGGGAATTGATGTTGTTATATGGTGGGATAGAAATGAGAATGCATGGCAAGTTTTTGATGATGCTTGTCCTCATAGATTAGCACCTTTATCTGAAGGAAGGATTGATCAATGGGGTAGGTTACAGTGTGTGTATCATGGTTGGTGTTTTAATGGATCAGGTGATTGCAAGTTCATTCCTCAGGCACCTCCTGACGGACCTCCGATTCATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGGTATCGTGTGGTTTTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGGAAAACACCCCCATTCATACCAGAAATTGATGATCCGTCCTTTACTAGCGTAATGGGAAACAGAGATATTGCTTATGGGTATGAGGTTCTGATTGAAAACCTCATGGACCCTGCACATACTACATATGCACACTACGGAATAATGAACACTCCAAAACCAAAAGTGAAAGCTGATAGAGAAGGAGGAAGACCACTTGACCTGTCAATTGAAGAGTTAGATATCAACGGTTTCACAGCAAATCAGGGTTGGAGCAAAAGCAAGTTTATGCCACCAAGCATCTTTTATGCATATACTGATCCAAATAAACTTGCACCTTCTGATGAAACTAAGAATTCATCAGTTCAGAAGAAATTTGCTTTGGTCTTTATTTGTATTCCTGTTAGTCCCGGCAACAGCAGACTGATTTGGTGCTTCCCAAGAAACTTTGGGCTGTGGATTGACAAAATTGTACCGCGATGGATTTTTCATGTTAGACAAAACTTGGTTCTAGATTCAGATACGTATCTTCTCCATGTTGAGGAAAAAAAAATAATGGATGTTGGTCAAGCCAATTGGCAGAAGGCAATGTTTGTGCCAACAAAGGCAGATGCTCTTGTGATTGGTTTTAGAAAATGGTTAAAGAAGTATGCAGGTGATCAAGTTGAATGGAGAGGAAAATATAGTGGAGCCCTTCCTCCTACACCTCCCAGAGAACAACTTATGGACAGGTACTGGAGCCATACGGTGAATTGTAAGAGTTGCAATTTAGCCTATAAGAGTCTCAATGTGGTGGAAGTGATGCTGCAGATCATATCAGTTGCTTCAGTTGGGATTGTTGCCACAATGAAGCAGGGTGTGGTTTCAGCTACAACAAGAAATTCAATGGTTGTGTTGGCAGTGCTTTCATTCGCGTTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTACCATGACTACAACCACGCCTTTCGCTGA

Protein sequence

>Msa0700930

MEAFSVSSLHIPIALEPHIPFQKSIFLNSQLHSTLPLIRGNTSKFKLFTALSPSPLTDSSSSNLHVDDEPEDETSSEKFDWYSQWYPLMPICDLDKRAPHAKKVMGIDVVIWWDRNENAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPDGPPIHTSKKACVAAYPSTVQNGIVWFWPNTDPQYKDIITRKTPPFIPEIDDPSFTSVMGNRDIAYGYEVLIENLMDPAHTTYAHYGIMNTPKPKVKADREGGRPLDLSIEELDINGFTANQGWSKSKFMPPSIFYAYTDPNKLAPSDETKNSSVQKKFALVFICIPVSPGNSRLIWCFPRNFGLWIDKIVPRWIFHVRQNLVLDSDTYLLHVEEKKIMDVGQANWQKAMFVPTKADALVIGFRKWLKKYAGDQVEWRGKYSGALPPTPPREQLMDRYWSHTVNCKSCNLAYKSLNVVEVMLQIISVASVGIVATMKQGVVSATTRNSMVVLAVLSFALSRWLAHFIYKNFRYHDYNHAFR*