Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0464410 | XP_013460836.1 | 98.182 | 660 | 12 | 0 | 1 | 660 | 1 | 660 | 0.0 | 1325 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0464410 | sp|P53393|SUT3_STYHA | 78.302 | 636 | 132 | 3 | 27 | 659 | 10 | 642 | 0.0 | 996 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0464410 | A0A072V9P8 | 98.182 | 660 | 12 | 0 | 1 | 660 | 1 | 660 | 0.0 | 1325 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000610 | Msa0464410 | 0.812939 | 3.293036e-51 | -8.615850e-47 |
Msa0001040 | Msa0464410 | 0.825749 | 3.956371e-54 | -8.615850e-47 |
Msa0024490 | Msa0464410 | 0.815293 | 9.958815e-52 | -8.615850e-47 |
Msa0026120 | Msa0464410 | 0.817437 | 3.299245e-52 | -8.615850e-47 |
Msa0063850 | Msa0464410 | 0.841719 | 4.006887e-58 | -8.615850e-47 |
Msa0065190 | Msa0464410 | 0.819962 | 8.817860e-53 | -8.615850e-47 |
Msa0110500 | Msa0464410 | 0.825334 | 4.960058e-54 | -8.615850e-47 |
Msa0112800 | Msa0464410 | 0.815875 | 7.389046e-52 | -8.615850e-47 |
Msa0118250 | Msa0464410 | 0.810978 | 8.808089e-51 | -8.615850e-47 |
Msa0127210 | Msa0464410 | 0.810452 | 1.144666e-50 | -8.615850e-47 |
Msa0166580 | Msa0464410 | 0.810128 | 1.344398e-50 | -8.615850e-47 |
Msa0172110 | Msa0464410 | 0.803371 | 3.598670e-49 | -8.615850e-47 |
Msa0197600 | Msa0464410 | 0.817827 | 2.694072e-52 | -8.615850e-47 |
Msa0198140 | Msa0464410 | 0.836056 | 1.169890e-56 | -8.615850e-47 |
Msa0198220 | Msa0464410 | 0.831210 | 1.899034e-55 | -8.615850e-47 |
Msa0201910 | Msa0464410 | 0.805115 | 1.560178e-49 | -8.615850e-47 |
Msa0218480 | Msa0464410 | 0.801252 | 9.830846e-49 | -8.615850e-47 |
Msa0404330 | Msa0464410 | 0.821619 | 3.667041e-53 | -8.615850e-47 |
Msa0404360 | Msa0464410 | 0.832754 | 7.892785e-56 | -8.615850e-47 |
Msa0404440 | Msa0464410 | 0.829826 | 4.141590e-55 | -8.615850e-47 |
Msa0438440 | Msa0464410 | 0.801498 | 8.753152e-49 | -8.615850e-47 |
Msa0463140 | Msa0464410 | 0.801839 | 7.449742e-49 | -8.615850e-47 |
Msa0464410 | Msa0478660 | 0.803482 | 3.412988e-49 | -8.615850e-47 |
Msa0464410 | Msa0504630 | 0.802086 | 6.630075e-49 | -8.615850e-47 |
Msa0464410 | Msa0510030 | 0.964894 | 6.623319e-124 | -8.615850e-47 |
Msa0464410 | Msa0515420 | 0.808792 | 2.601686e-50 | -8.615850e-47 |
Msa0464410 | Msa0525940 | 0.838573 | 2.653778e-57 | -8.615850e-47 |
Msa0464410 | Msa0539400 | 0.808078 | 3.694994e-50 | -8.615850e-47 |
Msa0464410 | Msa0540160 | 0.801858 | 7.383560e-49 | -8.615850e-47 |
Msa0464410 | Msa0543310 | 0.837266 | 5.751670e-57 | -8.615850e-47 |
Msa0464410 | Msa0548230 | 0.805771 | 1.136341e-49 | -8.615850e-47 |
Msa0464410 | Msa0553570 | 0.815264 | 1.010679e-51 | -8.615850e-47 |
Msa0464410 | Msa0561750 | 0.817256 | 3.624485e-52 | -8.615850e-47 |
Msa0464410 | Msa0565530 | 0.844345 | 8.006083e-59 | -8.615850e-47 |
Msa0464410 | Msa0565930 | 0.800208 | 1.605578e-48 | -8.615850e-47 |
Msa0464410 | Msa0578890 | 0.800805 | 1.212972e-48 | -8.615850e-47 |
Msa0464410 | Msa0587070 | 0.823809 | 1.134335e-53 | -8.615850e-47 |
Msa0464410 | Msa0595240 | 0.840280 | 9.564582e-58 | -8.615850e-47 |
Msa0464410 | Msa0599250 | 0.811102 | 8.280130e-51 | -8.615850e-47 |
Msa0464410 | Msa0622400 | 0.805852 | 1.092900e-49 | -8.615850e-47 |
Msa0464410 | Msa0625310 | 0.814322 | 1.634601e-51 | -8.615850e-47 |
Msa0464410 | Msa0626900 | 0.806300 | 8.795419e-50 | -8.615850e-47 |
Msa0464410 | Msa0636840 | 0.800463 | 1.424251e-48 | -8.615850e-47 |
Msa0464410 | Msa0639880 | 0.813843 | 2.084798e-51 | -8.615850e-47 |
Msa0464410 | Msa0649530 | 0.806529 | 7.868639e-50 | -8.615850e-47 |
Msa0464410 | Msa0655080 | 0.819301 | 1.247847e-52 | -8.615850e-47 |
Msa0464410 | Msa0666380 | 0.800984 | 1.115125e-48 | -8.615850e-47 |
Msa0464410 | Msa0668000 | 0.801925 | 7.151941e-49 | -8.615850e-47 |
Msa0464410 | Msa0675250 | 0.839863 | 1.228487e-57 | -8.615850e-47 |
Msa0464410 | Msa0721650 | 0.855148 | 7.664044e-62 | -8.615850e-47 |
Msa0464410 | Msa0741600 | 0.804283 | 2.326390e-49 | -8.615850e-47 |
Msa0464410 | Msa0741710 | 0.817675 | 2.915939e-52 | -8.615850e-47 |
Msa0464410 | Msa0752540 | 0.810777 | 9.734960e-51 | -8.615850e-47 |
Msa0464410 | Msa0774560 | 0.805241 | 1.467721e-49 | -8.615850e-47 |
Msa0464410 | Msa0803930 | 0.828989 | 6.613820e-55 | -8.615850e-47 |
Msa0464410 | Msa0807130 | 0.806853 | 6.722893e-50 | -8.615850e-47 |
Msa0464410 | Msa0829430 | 0.802507 | 5.430149e-49 | -8.615850e-47 |
Msa0464410 | Msa0839730 | 0.801141 | 1.035932e-48 | -8.615850e-47 |
Msa0464410 | Msa0839800 | 0.809179 | 2.150673e-50 | -8.615850e-47 |
Msa0464410 | Msa0848780 | 0.820545 | 6.482276e-53 | -8.615850e-47 |
Msa0464410 | Msa0849080 | 0.845686 | 3.478311e-59 | -8.615850e-47 |
Msa0464410 | Msa0876150 | 0.812101 | 5.023074e-51 | -8.615850e-47 |
Msa0464410 | Msa0938190 | 0.821433 | 4.049229e-53 | -8.615850e-47 |
Msa0464410 | Msa1072640 | 0.801900 | 7.237957e-49 | -8.615850e-47 |
Msa0464410 | Msa1098350 | 0.808005 | 3.831113e-50 | -8.615850e-47 |
Msa0464410 | Msa1106320 | 0.803018 | 4.258728e-49 | -8.615850e-47 |
Msa0464410 | Msa1112230 | 0.810774 | 9.751166e-51 | -8.615850e-47 |
Msa0464410 | Msa1117830 | 0.805179 | 1.512593e-49 | -8.615850e-47 |
Msa0464410 | Msa1134830 | 0.801621 | 8.258655e-49 | -8.615850e-47 |
Msa0464410 | Msa1138480 | 0.806154 | 9.440978e-50 | -8.615850e-47 |
Msa0464410 | Msa1138490 | 0.815877 | 7.379623e-52 | -8.615850e-47 |
Msa0464410 | Msa1143820 | 0.825898 | 3.646476e-54 | -8.615850e-47 |
Msa0464410 | Msa1157310 | 0.826852 | 2.160874e-54 | -8.615850e-47 |
Msa0464410 | Msa1175850 | 0.806857 | 6.710839e-50 | -8.615850e-47 |
Msa0464410 | Msa1182960 | 0.815313 | 9.855966e-52 | -8.615850e-47 |
Msa0464410 | Msa1186010 | 0.821866 | 3.214190e-53 | -8.615850e-47 |
Msa0464410 | Msa1211280 | 0.806874 | 6.653206e-50 | -8.615850e-47 |
Msa0464410 | Msa1213550 | 0.871221 | 8.060154e-67 | -8.615850e-47 |
Msa0464410 | Msa1235940 | 0.802034 | 6.793289e-49 | -8.615850e-47 |
Msa0464410 | Msa1277580 | 0.807082 | 6.014715e-50 | -8.615850e-47 |
Msa0464410 | Msa1326900 | 0.853728 | 1.972101e-61 | -8.615850e-47 |
Msa0464410 | Msa1329820 | 0.818943 | 1.505332e-52 | -8.615850e-47 |
Msa0464410 | Msa1331400 | 0.871984 | 4.502883e-67 | -8.615850e-47 |
Msa0464410 | Msa1336350 | 0.808036 | 3.771791e-50 | -8.615850e-47 |
Msa0464410 | Msa1356730 | 0.805948 | 1.043085e-49 | -8.615850e-47 |
Msa0464410 | Msa1364420 | 0.814084 | 1.844346e-51 | -8.615850e-47 |
Msa0464410 | Msa1368800 | 0.813615 | 2.339696e-51 | -8.615850e-47 |
Msa0464410 | Msa1371060 | 0.810102 | 1.361645e-50 | -8.615850e-47 |
Msa0464410 | Msa1413880 | 0.808156 | 3.557617e-50 | -8.615850e-47 |
Msa0464410 | Msa1414560 | 0.807823 | 4.187949e-50 | -8.615850e-47 |
Msa0464410 | Msa1419040 | 0.805851 | 1.093233e-49 | -8.615850e-47 |
Msa0464410 | Msa1422150 | 0.823677 | 1.217651e-53 | -8.615850e-47 |
Msa0464410 | Msa1433380 | 0.804913 | 1.719349e-49 | -8.615850e-47 |
Msa0464410 | Msa1435990 | 0.868536 | 6.071941e-66 | -8.615850e-47 |
Msa0464410 | Msa1443440 | 0.808958 | 2.397640e-50 | -8.615850e-47 |
Msa0464410 | Msa1459170 | 0.822612 | 2.158466e-53 | -8.615850e-47 |
Msa0278340 | Msa0464410 | 0.832340 | 9.995968e-56 | -8.615850e-47 |
Msa0288280 | Msa0464410 | 0.802716 | 4.916825e-49 | -8.615850e-47 |
Msa0317630 | Msa0464410 | 0.800789 | 1.222007e-48 | -8.615850e-47 |
Msa0324390 | Msa0464410 | 0.807465 | 4.989523e-50 | -8.615850e-47 |
Msa0324430 | Msa0464410 | 0.802113 | 6.543512e-49 | -8.615850e-47 |
Msa0359630 | Msa0464410 | 0.811270 | 7.615130e-51 | -8.615850e-47 |
Msa0360130 | Msa0464410 | 0.813764 | 2.169850e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0464410 | MtrunA17_Chr3g0115461 | 98.182 | 660 | 12 | 0 | 1 | 660 | 1 | 660 | 0.0 | 1325 |
Msa0464410 | MtrunA17_Chr5g0425241 | 75.926 | 648 | 146 | 4 | 19 | 658 | 7 | 652 | 0.0 | 997 |
Msa0464410 | MtrunA17_Chr3g0124381 | 62.673 | 651 | 227 | 5 | 15 | 657 | 12 | 654 | 0.0 | 817 |
Msa0464410 | MtrunA17_Chr5g0425251 | 51.729 | 665 | 303 | 7 | 3 | 660 | 2 | 655 | 0.0 | 679 |
Msa0464410 | MtrunA17_Chr3g0124371 | 51.946 | 668 | 295 | 11 | 2 | 658 | 6 | 658 | 0.0 | 664 |
Msa0464410 | MtrunA17_Chr3g0115481 | 51.623 | 647 | 288 | 6 | 23 | 652 | 13 | 651 | 0.0 | 652 |
Msa0464410 | MtrunA17_Chr2g0278931 | 51.907 | 603 | 277 | 5 | 52 | 649 | 54 | 648 | 0.0 | 606 |
Msa0464410 | MtrunA17_Chr7g0260181 | 48.962 | 578 | 287 | 3 | 75 | 652 | 65 | 634 | 0.0 | 553 |
Msa0464410 | MtrunA17_Chr2g0331951 | 45.300 | 649 | 338 | 6 | 20 | 660 | 8 | 647 | 0.0 | 536 |
Msa0464410 | MtrunA17_Chr1g0185231 | 44.892 | 646 | 336 | 8 | 17 | 652 | 2 | 637 | 0.0 | 535 |
Msa0464410 | MtrunA17_Chr4g0043931 | 44.122 | 621 | 329 | 6 | 39 | 651 | 22 | 632 | 5.77e-177 | 518 |
Msa0464410 | MtrunA17_Chr4g0004261 | 45.950 | 605 | 319 | 3 | 56 | 660 | 58 | 654 | 5.55e-176 | 516 |
Msa0464410 | MtrunA17_Chr6g0485191 | 42.808 | 577 | 316 | 6 | 77 | 652 | 113 | 676 | 1.39e-159 | 475 |
Msa0464410 | MtrunA17_Chr4g0043951 | 43.872 | 563 | 291 | 7 | 5 | 560 | 3 | 547 | 1.40e-154 | 457 |
Msa0464410 | MtrunA17_Chr7g0222631 | 36.979 | 576 | 336 | 11 | 88 | 655 | 83 | 639 | 1.79e-111 | 351 |
Msa0464410 | MtrunA17_Chr1g0173031 | 51.667 | 180 | 84 | 1 | 70 | 246 | 66 | 245 | 3.38e-47 | 170 |
Msa0464410 | MtrunA17_Chr1g0173031 | 53.763 | 93 | 43 | 0 | 317 | 409 | 250 | 342 | 3.89e-27 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0464410 | AT5G10180.1 | 61.538 | 637 | 233 | 4 | 26 | 656 | 46 | 676 | 0.0 | 800 |
Msa0464410 | AT1G77990.1 | 61.860 | 645 | 222 | 5 | 20 | 650 | 30 | 664 | 0.0 | 779 |
Msa0464410 | AT1G22150.1 | 52.590 | 637 | 279 | 6 | 38 | 659 | 26 | 654 | 0.0 | 641 |
Msa0464410 | AT1G22150.3 | 52.590 | 637 | 279 | 6 | 38 | 659 | 26 | 654 | 0.0 | 641 |
Msa0464410 | AT1G22150.4 | 52.590 | 637 | 279 | 6 | 38 | 659 | 26 | 654 | 0.0 | 641 |
Msa0464410 | AT4G08620.1 | 52.607 | 633 | 273 | 6 | 38 | 652 | 17 | 640 | 0.0 | 637 |
Msa0464410 | AT1G78000.2 | 53.724 | 631 | 269 | 6 | 38 | 652 | 22 | 645 | 0.0 | 628 |
Msa0464410 | AT1G78000.1 | 53.724 | 631 | 269 | 6 | 38 | 652 | 22 | 645 | 0.0 | 628 |
Msa0464410 | AT1G78000.3 | 53.724 | 631 | 269 | 6 | 38 | 652 | 22 | 645 | 0.0 | 628 |
Msa0464410 | AT1G78000.5 | 54.223 | 592 | 248 | 6 | 38 | 613 | 22 | 606 | 0.0 | 589 |
Msa0464410 | AT1G22150.2 | 53.004 | 566 | 244 | 5 | 38 | 588 | 26 | 584 | 0.0 | 577 |
Msa0464410 | AT3G51895.2 | 45.342 | 644 | 338 | 6 | 14 | 652 | 48 | 682 | 0.0 | 572 |
Msa0464410 | AT3G51895.1 | 45.342 | 644 | 338 | 6 | 14 | 652 | 3 | 637 | 0.0 | 571 |
Msa0464410 | AT1G78000.4 | 54.386 | 570 | 237 | 6 | 38 | 591 | 22 | 584 | 0.0 | 567 |
Msa0464410 | AT3G15990.1 | 45.854 | 591 | 310 | 5 | 60 | 649 | 59 | 640 | 1.61e-179 | 525 |
Msa0464410 | AT1G23090.1 | 46.312 | 583 | 303 | 5 | 75 | 656 | 51 | 624 | 7.42e-175 | 512 |
Msa0464410 | AT4G02700.1 | 44.534 | 622 | 330 | 5 | 37 | 652 | 15 | 627 | 3.27e-169 | 498 |
Msa0464410 | AT1G78000.7 | 57.237 | 456 | 188 | 3 | 136 | 591 | 1 | 449 | 1.02e-168 | 490 |
Msa0464410 | AT1G78000.6 | 55.785 | 484 | 193 | 4 | 38 | 505 | 22 | 500 | 1.77e-165 | 484 |
Msa0464410 | AT5G19600.1 | 42.832 | 579 | 308 | 5 | 77 | 652 | 65 | 623 | 3.55e-163 | 483 |
Msa0464410 | AT1G23090.2 | 44.950 | 505 | 264 | 6 | 153 | 656 | 1 | 492 | 1.96e-141 | 422 |
Msa0464410 | AT1G23090.3 | 44.950 | 505 | 264 | 6 | 153 | 656 | 1 | 492 | 1.96e-141 | 422 |
Msa0464410 | AT1G23090.4 | 44.950 | 505 | 264 | 6 | 153 | 656 | 1 | 492 | 1.96e-141 | 422 |
Msa0464410 | AT3G12520.2 | 34.211 | 608 | 376 | 10 | 53 | 655 | 28 | 616 | 1.44e-112 | 353 |
Msa0464410 | AT3G12520.1 | 34.211 | 608 | 376 | 10 | 53 | 655 | 44 | 632 | 1.57e-112 | 353 |
Msa0464410 | AT5G13550.1 | 33.940 | 604 | 383 | 8 | 53 | 655 | 57 | 645 | 2.12e-108 | 343 |
Msa0464410 | AT3G12520.3 | 34.122 | 507 | 318 | 8 | 53 | 558 | 44 | 535 | 2.11e-91 | 294 |
Find 160 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTATCATCTCATCATTTC+TGG | 0.150736 | 3_3:-64348507 | Msa0464410:three_prime_UTR |
GCACACTTTGTGGATAAAAT+TGG | 0.172279 | 3_3:-64348950 | Msa0464410:CDS |
TCTATCACCCTACGTTATTT+TGG | 0.199361 | 3_3:+64348659 | None:intergenic |
TAATGTACATTCATGTTTAC+AGG | 0.239899 | 3_3:+64354727 | None:intergenic |
GAAAACAAATGGAGAGTTTA+TGG | 0.241420 | 3_3:-64348722 | Msa0464410:three_prime_UTR |
ATATTACTAATGTTTGAAAA+TGG | 0.250588 | 3_3:-64354981 | Msa0464410:five_prime_UTR |
GTTGGACAAGCAGCTAAAAT+TGG | 0.258087 | 3_3:-64352240 | Msa0464410:CDS |
GCAAAACTTGATCCTCAATA+TGG | 0.263394 | 3_3:-64354202 | Msa0464410:CDS |
ATCTGATGTGGTTTCTGTTT+TGG | 0.265706 | 3_3:-64353624 | Msa0464410:CDS |
TAAGAGAAGCTTGCTATATA+TGG | 0.265917 | 3_3:-64351138 | Msa0464410:CDS |
TTGTCACATGCTGCACTTGT+AGG | 0.290645 | 3_3:-64353725 | Msa0464410:CDS |
TTGATGAATGTTGATACTTC+TGG | 0.296180 | 3_3:-64349340 | Msa0464410:CDS |
TTCCATAGAGGAGGTGGATT+TGG | 0.296434 | 3_3:+64354544 | None:intergenic |
ATAATCCTCTCTGCACTTCC+AGG | 0.297333 | 3_3:-64351172 | Msa0464410:CDS |
GATGAATTGAGCTTGGATTA+AGG | 0.309003 | 3_3:+64352286 | None:intergenic |
CACCAAATCCACCTCCTCTA+TGG | 0.326646 | 3_3:-64354546 | Msa0464410:CDS |
GAGGATTATAGAAGCAAGTA+TGG | 0.339449 | 3_3:+64351186 | None:intergenic |
TGTCAAGGGTCAATTTGATT+TGG | 0.342464 | 3_3:+64354758 | None:intergenic |
GATTGGTCTTCAGCAGCTTA+AGG | 0.344368 | 3_3:-64353678 | Msa0464410:CDS |
TGGATAAAATTGGGAAAGAA+TGG | 0.350661 | 3_3:-64348940 | Msa0464410:CDS |
ATTAAAGGATACCATCTAGA+TGG | 0.353006 | 3_3:-64352040 | Msa0464410:CDS |
ATTGGTTAATCTATAAAGTT+GGG | 0.372974 | 3_3:+64354869 | None:intergenic |
TCTTGTGGCATCTCTTAGAT+TGG | 0.377154 | 3_3:+64354851 | None:intergenic |
TTTCTTTGTTCCCATCTAGA+TGG | 0.377693 | 3_3:+64352029 | None:intergenic |
AAGGGTCCAAGCTGTAATAT+TGG | 0.384678 | 3_3:-64349485 | Msa0464410:CDS |
CGACCTGGGATAGAAGTTCT+TGG | 0.386434 | 3_3:-64349818 | Msa0464410:CDS |
GATTGGTTAATCTATAAAGT+TGG | 0.387949 | 3_3:+64354868 | None:intergenic |
CAGCAGCTTAAGGGGTTGCT+TGG | 0.391696 | 3_3:-64353668 | Msa0464410:CDS |
TTTACTGTAACATTATTTGC+TGG | 0.393090 | 3_3:-64353884 | Msa0464410:CDS |
GCTTAAAGTGGCACACTTTG+TGG | 0.393127 | 3_3:-64348960 | Msa0464410:CDS |
AGCAGCTTAAGGGGTTGCTT+GGG | 0.395989 | 3_3:-64353667 | Msa0464410:CDS |
TCACAGAAGGCTTGTGTTGT+TGG | 0.396597 | 3_3:+64349788 | None:intergenic |
GCTTGCATTGGTGCTTTCTT+CGG | 0.396879 | 3_3:-64351091 | Msa0464410:CDS |
CACACTTTGTGGATAAAATT+GGG | 0.397337 | 3_3:-64348949 | Msa0464410:CDS |
TCACAAAGATTATTCTTTGA+AGG | 0.402042 | 3_3:+64354801 | None:intergenic |
TATAACAGTGATTCTGTGTT+TGG | 0.410209 | 3_3:-64351245 | Msa0464410:CDS |
GAAATGTTAGCAATGGGTTG+TGG | 0.411356 | 3_3:-64352010 | Msa0464410:CDS |
ATGGGTTGTGGGAACATTGC+AGG | 0.411452 | 3_3:-64351998 | Msa0464410:CDS |
ATTGGTCTTCAGCAGCTTAA+GGG | 0.412152 | 3_3:-64353677 | Msa0464410:CDS |
ATTTGGATAATTGCTTGAAA+GGG | 0.415017 | 3_3:+64354775 | None:intergenic |
TGCTGCACTTGTAGGATTCA+TGG | 0.416473 | 3_3:-64353717 | Msa0464410:CDS |
TAACCATCATGATTTAAATC+TGG | 0.419091 | 3_3:+64353920 | None:intergenic |
GATTTGGATAATTGCTTGAA+AGG | 0.419392 | 3_3:+64354774 | None:intergenic |
AGAAACCACATCAGATTTGT+TGG | 0.419815 | 3_3:+64353631 | None:intergenic |
TTTGACTTCCTTGCTTGCAT+TGG | 0.419990 | 3_3:-64351103 | Msa0464410:CDS |
TTCTAAAATCCGAAAACAAA+TGG | 0.421575 | 3_3:-64348733 | Msa0464410:three_prime_UTR |
TAAAGAAAGTCAAACTACTA+AGG | 0.422266 | 3_3:-64349509 | Msa0464410:CDS |
TATCTAATGTTGCAGAGTAT+TGG | 0.423525 | 3_3:-64354238 | Msa0464410:intron |
TTGTTTGTATCGGTAGAAAC+TGG | 0.425008 | 3_3:-64351064 | Msa0464410:CDS |
AGTTCAAGAGAAATTGCAAT+TGG | 0.438871 | 3_3:-64353998 | Msa0464410:CDS |
TGTAATTGATGAATTGAGCT+TGG | 0.441048 | 3_3:+64352279 | None:intergenic |
CCATAAATCTTGCAAACAAA+AGG | 0.446827 | 3_3:+64352529 | None:intergenic |
CCTCTTATCTATGCTGTGAT+GGG | 0.450706 | 3_3:-64354022 | Msa0464410:CDS |
TCTCTTATGTCAATTAATCC+TGG | 0.451555 | 3_3:+64351154 | None:intergenic |
TACAAGCACTCCAGGCATCT+TGG | 0.452819 | 3_3:-64349744 | Msa0464410:CDS |
ACTTCATGCTATGTTGCAAC+TGG | 0.454245 | 3_3:-64351968 | Msa0464410:intron |
GGATAAAATTGGGAAAGAAT+GGG | 0.456057 | 3_3:-64348939 | Msa0464410:CDS |
TGTATCATCTCATCATTTCT+GGG | 0.458070 | 3_3:-64348506 | Msa0464410:three_prime_UTR |
CTTCGGTGTCTTGTTTGTAT+CGG | 0.463347 | 3_3:-64351074 | Msa0464410:CDS |
TCCTCTTATCTATGCTGTGA+TGG | 0.465460 | 3_3:-64354023 | Msa0464410:CDS |
GTACAATTGGAATTGCATAT+AGG | 0.468116 | 3_3:-64348827 | Msa0464410:three_prime_UTR |
AATATGAGAGTCACAGAAGA+TGG | 0.472056 | 3_3:-64354625 | Msa0464410:CDS |
CTCCATCATCAAATTCTATC+CGG | 0.473170 | 3_3:-64353584 | Msa0464410:CDS |
AAATGTTAGCAATGGGTTGT+GGG | 0.484005 | 3_3:-64352009 | Msa0464410:CDS |
TTCGCTGACCCATGATTTCA+CGG | 0.485009 | 3_3:-64348869 | Msa0464410:exon |
AACAAAGAAATGTTAGCAAT+GGG | 0.485559 | 3_3:-64352016 | Msa0464410:CDS |
TGTGAATTACTACCCACCTT+GGG | 0.486493 | 3_3:+64348984 | None:intergenic |
GCAGGTGCAGCCATCATGAT+TGG | 0.487827 | 3_3:-64353695 | Msa0464410:CDS |
AAGATACTCATCAAACAGAT+AGG | 0.488267 | 3_3:-64354588 | Msa0464410:CDS |
GATCCAGATTTAAATCATGA+TGG | 0.489231 | 3_3:-64353923 | Msa0464410:CDS |
TTGCAGGTTGGGATTTCTTG+TGG | 0.498105 | 3_3:-64353753 | Msa0464410:intron |
CCCATCACAGCATAGATAAG+AGG | 0.498846 | 3_3:+64354022 | None:intergenic |
TTAATCTATAAAGTTGGGAA+TGG | 0.499428 | 3_3:+64354874 | None:intergenic |
TTACCTTTCTCTTACAACAT+TGG | 0.501627 | 3_3:+64349682 | None:intergenic |
TGATAGAGAAACTAGTAGAG+TGG | 0.503596 | 3_3:-64348643 | Msa0464410:three_prime_UTR |
ATAGTAAAACATGTCAAAAG+AGG | 0.504882 | 3_3:-64352309 | Msa0464410:CDS |
CCCATGGCTACAAGCACTCC+AGG | 0.507925 | 3_3:-64349752 | Msa0464410:CDS |
TTGATATTATTATTAGGAGA+TGG | 0.509896 | 3_3:+64348479 | None:intergenic |
GACACTAGAGGAGCAATAGC+TGG | 0.513276 | 3_3:+64352390 | None:intergenic |
TACTTCTGGAATTATAGTAC+TGG | 0.514900 | 3_3:-64349326 | Msa0464410:CDS |
CCTTACTGTTTCTGAAGCTG+TGG | 0.516525 | 3_3:-64348912 | Msa0464410:CDS |
ATGCCAATGTTGTAAGAGAA+AGG | 0.517333 | 3_3:-64349685 | Msa0464410:intron |
ATTCATCAATTACAACTCAA+TGG | 0.519172 | 3_3:-64352270 | Msa0464410:CDS |
CAACTCAATGGTGAACATGT+TGG | 0.525684 | 3_3:-64352258 | Msa0464410:CDS |
TTGGTCATTCGTATAAGCTC+TGG | 0.525879 | 3_3:-64349725 | Msa0464410:CDS |
GCCTGGAGTGCTTGTAGCCA+TGG | 0.529683 | 3_3:+64349751 | None:intergenic |
TGCTAGCTTAAGCATACCTC+AGG | 0.531561 | 3_3:-64354353 | Msa0464410:intron |
CTCCGGATAGAATTTGATGA+TGG | 0.533410 | 3_3:+64353582 | None:intergenic |
GATCAACCACTTTGTGACAT+AGG | 0.533753 | 3_3:+64353942 | None:intergenic |
GAACAAAGAAATGTTAGCAA+TGG | 0.536518 | 3_3:-64352017 | Msa0464410:CDS |
AGCAGTGACACTACAGCTAC+AGG | 0.537993 | 3_3:+64353974 | None:intergenic |
CCACAGCTTCAGAAACAGTA+AGG | 0.539809 | 3_3:+64348912 | None:intergenic |
TTGAGGATGACAAGAAACTC+TGG | 0.540561 | 3_3:+64348780 | None:intergenic |
ATCAACCACTTTGTGACATA+GGG | 0.541144 | 3_3:+64353943 | None:intergenic |
TTGTGAATTACTACCCACCT+TGG | 0.545137 | 3_3:+64348983 | None:intergenic |
TTGGCAAGCATAAATAGAGC+GGG | 0.547711 | 3_3:-64354946 | Msa0464410:five_prime_UTR |
GGATTTATACTCATCTTCAC+AGG | 0.548225 | 3_3:-64354908 | Msa0464410:five_prime_UTR |
GGTCAGCGAATTTATAAGAC+AGG | 0.550450 | 3_3:+64348882 | None:intergenic |
AGAAAGCACCAATGCAAGCA+AGG | 0.551839 | 3_3:+64351095 | None:intergenic |
CAAGCATAAATAGAGCGGGG+GGG | 0.553569 | 3_3:-64354942 | Msa0464410:five_prime_UTR |
ATACGAATGACCAAGATGCC+TGG | 0.556493 | 3_3:+64349734 | None:intergenic |
TACCTACACAAGCCATATTG+AGG | 0.559998 | 3_3:+64354190 | None:intergenic |
AAAGAAAGTCAAACTACTAA+GGG | 0.561981 | 3_3:-64349508 | Msa0464410:CDS |
TATATAATCCAAAATAACGT+AGG | 0.563380 | 3_3:-64348667 | Msa0464410:three_prime_UTR |
TTGGTCTTCAGCAGCTTAAG+GGG | 0.565521 | 3_3:-64353676 | Msa0464410:CDS |
TTAAAGGATACCATCTAGAT+GGG | 0.565733 | 3_3:-64352039 | Msa0464410:CDS |
ATCAGTATCAAATATTGTGA+TGG | 0.566934 | 3_3:-64351269 | Msa0464410:CDS |
CCAAGCTGTAATATTGGACA+TGG | 0.568325 | 3_3:-64349479 | Msa0464410:CDS |
CCATGTCCAATATTACAGCT+TGG | 0.570097 | 3_3:+64349479 | None:intergenic |
CTACCAAGAACTTCTATCCC+AGG | 0.571095 | 3_3:+64349815 | None:intergenic |
AGTAATTCACAAGCTTAAAG+TGG | 0.571416 | 3_3:-64348972 | Msa0464410:CDS |
TTACAGGACTAGATTTGTCA+AGG | 0.575265 | 3_3:+64354743 | None:intergenic |
TACTGGAGGAACTGCACAAG+AGG | 0.577069 | 3_3:-64349309 | Msa0464410:CDS |
ATAGAAGCAAGTATGGCCAC+AGG | 0.579064 | 3_3:+64351193 | None:intergenic |
AAAGTCAAACTACTAAGGGA+AGG | 0.579628 | 3_3:-64349504 | Msa0464410:CDS |
GCAAGCATAAATAGAGCGGG+GGG | 0.581635 | 3_3:-64354943 | Msa0464410:five_prime_UTR |
CACAAGAGGTTGCTCTCCCG+TGG | 0.584272 | 3_3:-64349295 | Msa0464410:CDS |
AAAACGACCCGTGAAATCAT+GGG | 0.588981 | 3_3:+64348861 | None:intergenic |
ATATAATCCAAAATAACGTA+GGG | 0.591078 | 3_3:-64348666 | Msa0464410:three_prime_UTR |
TGTGTTTGGAATTGTTTACA+AGG | 0.592100 | 3_3:-64351231 | Msa0464410:CDS |
TTTGGATAATTGCTTGAAAG+GGG | 0.593960 | 3_3:+64354776 | None:intergenic |
TACAGGACTAGATTTGTCAA+GGG | 0.595898 | 3_3:+64354744 | None:intergenic |
AAGTCAAACTACTAAGGGAA+GGG | 0.596925 | 3_3:-64349503 | Msa0464410:CDS |
CTCTTATCTATGCTGTGATG+GGG | 0.597838 | 3_3:-64354021 | Msa0464410:CDS |
TTATAGGAAGCAATGGCTGT+TGG | 0.598367 | 3_3:-64352079 | Msa0464410:intron |
TCTCATATTGAAAGCATCAG+AGG | 0.599209 | 3_3:+64354639 | None:intergenic |
CTTCACCAACAAATCTGATG+TGG | 0.603053 | 3_3:-64353636 | Msa0464410:CDS |
TAGAAGCAAGTATGGCCACA+GGG | 0.603158 | 3_3:+64351194 | None:intergenic |
ATTGTTCCAGAATACTCAAG+TGG | 0.606100 | 3_3:-64349552 | Msa0464410:intron |
TTCTGGAATTATAGTACTGG+AGG | 0.606870 | 3_3:-64349323 | Msa0464410:CDS |
TGCTATGGTGAACCCAAGGT+GGG | 0.608813 | 3_3:-64348996 | Msa0464410:CDS |
GAAGGCTATGTATGACTGAG+AGG | 0.611649 | 3_3:+64354819 | None:intergenic |
CTTCCAATGACAAAATTCAG+AGG | 0.616131 | 3_3:+64352567 | None:intergenic |
TGTCAATATATGTCTCCGAT+CGG | 0.616791 | 3_3:-64348531 | Msa0464410:three_prime_UTR |
ATGAGATGATACAATCCGAT+CGG | 0.617531 | 3_3:+64348516 | None:intergenic |
CCTGGAGTGCTTGTAGCCAT+GGG | 0.620616 | 3_3:+64349752 | None:intergenic |
TCGCTGACCCATGATTTCAC+GGG | 0.622201 | 3_3:-64348868 | Msa0464410:exon |
CTCATATTGAAAGCATCAGA+GGG | 0.624348 | 3_3:+64354640 | None:intergenic |
TGATGTTAGTCAATATCCCA+TGG | 0.624539 | 3_3:-64349768 | Msa0464410:CDS |
TTGTTCCAGAATACTCAAGT+GGG | 0.625900 | 3_3:-64349551 | Msa0464410:intron |
TTGCTATGGTGAACCCAAGG+TGG | 0.625914 | 3_3:-64348997 | Msa0464410:CDS |
ATCTTCCCTATGTCACAAAG+TGG | 0.636118 | 3_3:-64353948 | Msa0464410:CDS |
GCACTTGTAGGATTCATGGC+AGG | 0.636916 | 3_3:-64353713 | Msa0464410:CDS |
GGCAAGCATAAATAGAGCGG+GGG | 0.638194 | 3_3:-64354944 | Msa0464410:five_prime_UTR |
TTCCAATGACAAAATTCAGA+GGG | 0.638852 | 3_3:+64352568 | None:intergenic |
ATATTGACTAACATCACAGA+AGG | 0.640670 | 3_3:+64349775 | None:intergenic |
GAGAGGATACTTGTGTCTTG+TGG | 0.649818 | 3_3:+64354836 | None:intergenic |
GTAATACAATCAATTCGACC+TGG | 0.650323 | 3_3:-64349833 | Msa0464410:CDS |
CTGCTGAAGACCAATCATGA+TGG | 0.650508 | 3_3:+64353685 | None:intergenic |
ATCACAGCATAGATAAGAGG+AGG | 0.652330 | 3_3:+64354025 | None:intergenic |
TAATACAATCAATTCGACCT+GGG | 0.657689 | 3_3:-64349832 | Msa0464410:CDS |
TGGCAAGCATAAATAGAGCG+GGG | 0.658398 | 3_3:-64354945 | Msa0464410:five_prime_UTR |
AACAAATGGAGAGTTTATGG+AGG | 0.661180 | 3_3:-64348719 | Msa0464410:three_prime_UTR |
ATTGGCAAGCATAAATAGAG+CGG | 0.678446 | 3_3:-64354947 | Msa0464410:five_prime_UTR |
GATAATATAACTGACACTAG+AGG | 0.681566 | 3_3:+64352378 | None:intergenic |
AGTTTGCTATGGTGAACCCA+AGG | 0.691933 | 3_3:-64349000 | Msa0464410:CDS |
AGAAGCAAGTATGGCCACAG+GGG | 0.717759 | 3_3:+64351195 | None:intergenic |
ATCAAACAGATAGGACACAG+TGG | 0.745524 | 3_3:-64354579 | Msa0464410:CDS |
GCTGTTATATTACACCCCTG+TGG | 0.757735 | 3_3:-64351209 | Msa0464410:CDS |
TTAATCCTGGAAGTGCAGAG+AGG | 0.761072 | 3_3:+64351167 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTATTTTTATAAAT+TGG | + | chr3_3:64351927-64351946 | None:intergenic | 0.0% |
!!! | GTTTATTTTTTTCATAAAAA+AGG | + | chr3_3:64350100-64350119 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTCATTTTCT+GGG | - | chr3_3:64350331-64350350 | Msa0464410:intron | 10.0% |
!!! | AAGAAATTCTAATAATTTTT+TGG | + | chr3_3:64350681-64350700 | None:intergenic | 10.0% |
!!! | TAAGAAATGAAATATATTTT+TGG | - | chr3_3:64350837-64350856 | Msa0464410:intron | 10.0% |
!!! | TTTTTATTTTTTTTTAGAGT+TGG | + | chr3_3:64353162-64353181 | None:intergenic | 10.0% |
!! | TAAATATCTAAATGAAAATT+TGG | - | chr3_3:64353455-64353474 | Msa0464410:intron | 10.0% |
!!! | TATAGATTTTATTAAAATTG+TGG | - | chr3_3:64354223-64354242 | Msa0464410:CDS | 10.0% |
!!! | TTTCTTTTGATATTATTATT+AGG | + | chr3_3:64354873-64354892 | None:intergenic | 10.0% |
!! | ATATTACTAATGTTTGAAAA+TGG | - | chr3_3:64348362-64348381 | Msa0464410:three_prime_UTR | 15.0% |
!!! | AAGTAAGTACTTTTTTTTTT+TGG | - | chr3_3:64349784-64349803 | Msa0464410:CDS | 15.0% |
!!! | ATTTCTCTTAACTTAATTTT+AGG | - | chr3_3:64350003-64350022 | Msa0464410:intron | 15.0% |
!!! | ATTGTCATTTTATATCATAA+AGG | - | chr3_3:64350228-64350247 | Msa0464410:intron | 15.0% |
!! | TAGTTACAAAAAAAAGATAA+AGG | - | chr3_3:64350257-64350276 | Msa0464410:intron | 15.0% |
!! | CAGAAAATGAAAAAAAAAAA+AGG | + | chr3_3:64350332-64350351 | None:intergenic | 15.0% |
!!! | CTTTTTTTTTTTTCATTTTC+TGG | - | chr3_3:64350330-64350349 | Msa0464410:intron | 15.0% |
!! | TAAAGACAATTAACAAAAAA+GGG | - | chr3_3:64350552-64350571 | Msa0464410:intron | 15.0% |
!!! | GAAAATAACAGTATATTTTT+AGG | - | chr3_3:64350652-64350671 | Msa0464410:intron | 15.0% |
!! | ATATTGTTCAAGTAAAAATT+TGG | + | chr3_3:64350870-64350889 | None:intergenic | 15.0% |
!! | TTCTAAACATATATGAAAAT+AGG | + | chr3_3:64352362-64352381 | None:intergenic | 15.0% |
!!! | GTTTTTAACCAATAAATTAA+CGG | - | chr3_3:64352531-64352550 | Msa0464410:CDS | 15.0% |
!!! | TTTTTAACCAATAAATTAAC+GGG | - | chr3_3:64352532-64352551 | Msa0464410:CDS | 15.0% |
!! | ATAGACTAAAAATAAAATTC+TGG | + | chr3_3:64352586-64352605 | None:intergenic | 15.0% |
!! | ACGAAATTATTGATATTTAT+GGG | - | chr3_3:64352724-64352743 | Msa0464410:intron | 15.0% |
!! | TAACTAAAATATTTGTAAAG+TGG | + | chr3_3:64352886-64352905 | None:intergenic | 15.0% |
!!! | CATCAATAAAATTGTTTTTA+AGG | + | chr3_3:64353251-64353270 | None:intergenic | 15.0% |
!!! | TATTTATTTTCCTTTTATTG+TGG | + | chr3_3:64353441-64353460 | None:intergenic | 15.0% |
!! | GTATATATTCAACAAAATTA+TGG | + | chr3_3:64354202-64354221 | None:intergenic | 15.0% |
!! | ATTGGTTAATCTATAAAGTT+GGG | + | chr3_3:64348477-64348496 | None:intergenic | 20.0% |
!!! | AAAAACTTGTTATTCTTAAG+TGG | + | chr3_3:64348838-64348857 | None:intergenic | 20.0% |
!!! | AACATTGGTCTAAAAATAAA+AGG | + | chr3_3:64349035-64349054 | None:intergenic | 20.0% |
!!! | TATTTATGTATCTGAAACAT+TGG | + | chr3_3:64349050-64349069 | None:intergenic | 20.0% |
!!! | ATATGAATGATTTGTTTGAT+TGG | - | chr3_3:64349274-64349293 | Msa0464410:intron | 20.0% |
!! | AGATAATTAACAGTTAAATG+AGG | + | chr3_3:64349530-64349549 | None:intergenic | 20.0% |
!!! | AATTTAATTTAATCTGTTGC+AGG | - | chr3_3:64349574-64349593 | Msa0464410:intron | 20.0% |
!! | TATCATTACTCTTAAGTTAA+GGG | + | chr3_3:64349828-64349847 | None:intergenic | 20.0% |
!! | ATATCATTACTCTTAAGTTA+AGG | + | chr3_3:64349829-64349848 | None:intergenic | 20.0% |
!! | ATCGTTACAAAAAAAGATAA+AGG | + | chr3_3:64350041-64350060 | None:intergenic | 20.0% |
!!! | GTTGTTATTTTCTAACATAA+AGG | + | chr3_3:64350069-64350088 | None:intergenic | 20.0% |
!!! | TGAGATTGATGAATTTTTTT+TGG | + | chr3_3:64350130-64350149 | None:intergenic | 20.0% |
!!! | TCAATGAAATTTGATTTTCT+AGG | + | chr3_3:64350182-64350201 | None:intergenic | 20.0% |
!! | TGTTACCTAAAATTAAGTTA+AGG | - | chr3_3:64350287-64350306 | Msa0464410:intron | 20.0% |
!! | GTTACCTAAAATTAAGTTAA+GGG | - | chr3_3:64350288-64350307 | Msa0464410:intron | 20.0% |
!! | GTAAAGACAATTAACAAAAA+AGG | - | chr3_3:64350551-64350570 | Msa0464410:intron | 20.0% |
!!! | ATATACTGTTATTTTCAACT+AGG | + | chr3_3:64350648-64350667 | None:intergenic | 20.0% |
!! | ATATCCAAAACAGATAAAAA+TGG | - | chr3_3:64351004-64351023 | Msa0464410:intron | 20.0% |
!! | TATCCAAAACAGATAAAAAT+GGG | - | chr3_3:64351005-64351024 | Msa0464410:intron | 20.0% |
!!! | TTTAGTTTCTGAAATTTTTG+AGG | - | chr3_3:64351228-64351247 | Msa0464410:CDS | 20.0% |
!!! | AGGTTTAATTTGTGTTTTAT+AGG | - | chr3_3:64351248-64351267 | Msa0464410:CDS | 20.0% |
!!! | GATCTACTTTTATCTATTTT+AGG | + | chr3_3:64351485-64351504 | None:intergenic | 20.0% |
!!! | TTTATGTCTTTAACTTTTGT+TGG | + | chr3_3:64351632-64351651 | None:intergenic | 20.0% |
!!! | AGTTTAACTTAATAGATTCA+AGG | + | chr3_3:64352507-64352526 | None:intergenic | 20.0% |
!!! | TGTTTTTCTTTACTCTTTTT+AGG | + | chr3_3:64352665-64352684 | None:intergenic | 20.0% |
!! | GACGAAATTATTGATATTTA+TGG | - | chr3_3:64352723-64352742 | Msa0464410:intron | 20.0% |
!!! | TTTTTACCAATAATTTTGAC+CGG | + | chr3_3:64352955-64352974 | None:intergenic | 20.0% |
!! | AATTATTGGTAAAAAGACAA+AGG | - | chr3_3:64352960-64352979 | Msa0464410:intron | 20.0% |
!!! | CTATTATTGAAGTTCATTTT+TGG | - | chr3_3:64353129-64353148 | Msa0464410:intron | 20.0% |
!!! | AAATGAAAATTTGGTTTTGT+AGG | - | chr3_3:64353464-64353483 | Msa0464410:intron | 20.0% |
!!! | TTTTATGTGTAATGTACAAT+TGG | - | chr3_3:64354503-64354522 | Msa0464410:CDS | 20.0% |
!! | TATATAATCCAAAATAACGT+AGG | - | chr3_3:64354676-64354695 | Msa0464410:five_prime_UTR | 20.0% |
!! | ATATAATCCAAAATAACGTA+GGG | - | chr3_3:64354677-64354696 | Msa0464410:five_prime_UTR | 20.0% |
!!! | TAAGATTTTTTTAATCCGAT+CGG | + | chr3_3:64354775-64354794 | None:intergenic | 20.0% |
!! | TTGATATTATTATTAGGAGA+TGG | + | chr3_3:64354867-64354886 | None:intergenic | 20.0% |
!!! | AAAAACTTACTTACATTTTG+AGG | - | chr3_3:64354935-64354954 | Msa0464410:five_prime_UTR | 20.0% |
! | AAAATGGAAAAAGCAATGAT+TGG | - | chr3_3:64348378-64348397 | Msa0464410:three_prime_UTR | 25.0% |
! | TTAATCTATAAAGTTGGGAA+TGG | + | chr3_3:64348472-64348491 | None:intergenic | 25.0% |
!! | GATTGGTTAATCTATAAAGT+TGG | + | chr3_3:64348478-64348497 | None:intergenic | 25.0% |
! | TCACAAAGATTATTCTTTGA+AGG | + | chr3_3:64348545-64348564 | None:intergenic | 25.0% |
! | ATTTGGATAATTGCTTGAAA+GGG | + | chr3_3:64348571-64348590 | None:intergenic | 25.0% |
! | TAATGTACATTCATGTTTAC+AGG | + | chr3_3:64348619-64348638 | None:intergenic | 25.0% |
!!! | TCATTTTTGTTGAAGTGTTT+GGG | + | chr3_3:64348675-64348694 | None:intergenic | 25.0% |
!!! | GTAATTAGTTTTTTCCATAG+AGG | + | chr3_3:64348814-64348833 | None:intergenic | 25.0% |
! | AGAAAGAAAAAACATGTTCA+TGG | + | chr3_3:64348885-64348904 | None:intergenic | 25.0% |
!!! | CATGTTTTTTCTTTCTTTAG+TGG | - | chr3_3:64348889-64348908 | Msa0464410:CDS | 25.0% |
!! | TTTTTGAACAAGCTAAGTAT+TGG | + | chr3_3:64348922-64348941 | None:intergenic | 25.0% |
!!! | TTTAAAGATGATTTTCTAGC+AGG | - | chr3_3:64348958-64348977 | Msa0464410:CDS | 25.0% |
! | TAACCATCATGATTTAAATC+TGG | + | chr3_3:64349426-64349445 | None:intergenic | 25.0% |
! | TTTACTGTAACATTATTTGC+TGG | - | chr3_3:64349459-64349478 | Msa0464410:intron | 25.0% |
!!! | AAAAAAAGTACTTACTTCTC+CGG | + | chr3_3:64349781-64349800 | None:intergenic | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | - | chr3_3:64349898-64349917 | Msa0464410:intron | 25.0% |
!! | TAGTCCCTTAACTTAATTTT+AGG | + | chr3_3:64350295-64350314 | None:intergenic | 25.0% |
! | AGACTGAGATTAACAAAAAA+AGG | - | chr3_3:64350516-64350535 | Msa0464410:intron | 25.0% |
! | GACTGAGATTAACAAAAAAA+GGG | - | chr3_3:64350517-64350536 | Msa0464410:intron | 25.0% |
!! | GGGTCATAAATTGTAAATTT+TGG | - | chr3_3:64350572-64350591 | Msa0464410:intron | 25.0% |
! | CAAGGTAAGATAAACATATT+AGG | - | chr3_3:64350616-64350635 | Msa0464410:intron | 25.0% |
! | TAAGATAAACATATTAGGCT+CGG | - | chr3_3:64350621-64350640 | Msa0464410:intron | 25.0% |
! | TTTGTCTATTATATTGACAG+TGG | - | chr3_3:64350750-64350769 | Msa0464410:intron | 25.0% |
!! | TTTGAGTTTCTGATTATTTC+AGG | - | chr3_3:64350901-64350920 | Msa0464410:intron | 25.0% |
! | TTGAGTTTCTGATTATTTCA+GGG | - | chr3_3:64350902-64350921 | Msa0464410:intron | 25.0% |
!! | AAAGAAACAAAAAGCTTTTC+TGG | - | chr3_3:64350927-64350946 | Msa0464410:intron | 25.0% |
! | ATCCAAAACAGATAAAAATG+GGG | - | chr3_3:64351006-64351025 | Msa0464410:intron | 25.0% |
! | ATAGTAAAACATGTCAAAAG+AGG | - | chr3_3:64351034-64351053 | Msa0464410:intron | 25.0% |
! | ATTCATCAATTACAACTCAA+TGG | - | chr3_3:64351073-64351092 | Msa0464410:CDS | 25.0% |
!! | AGATCTTTTGCTTCAATTAA+AGG | - | chr3_3:64351288-64351307 | Msa0464410:CDS | 25.0% |
! | AACAAAGAAATGTTAGCAAT+GGG | - | chr3_3:64351327-64351346 | Msa0464410:intron | 25.0% |
!! | ATTATTCTAGAAGTGAATTC+TGG | + | chr3_3:64351530-64351549 | None:intergenic | 25.0% |
!!! | TTCACTTCTAGAATAATTGA+AGG | - | chr3_3:64351533-64351552 | Msa0464410:intron | 25.0% |
! | AAGAATGTGAATTGTGTATT+TGG | + | chr3_3:64351783-64351802 | None:intergenic | 25.0% |
! | TTTAATTCTTAAACACTTGC+AGG | - | chr3_3:64352006-64352025 | Msa0464410:CDS | 25.0% |
! | ATCAGTATCAAATATTGTGA+TGG | - | chr3_3:64352074-64352093 | Msa0464410:CDS | 25.0% |
!!! | TGTTTGGGAATTTTAAGAAA+AGG | + | chr3_3:64352331-64352350 | None:intergenic | 25.0% |
! | TCTTAAACATGTGTGTAAAA+TGG | + | chr3_3:64352468-64352487 | None:intergenic | 25.0% |
! | AGAGTAAAGAAAAACATTAC+AGG | - | chr3_3:64352669-64352688 | Msa0464410:intron | 25.0% |
! | TTAGTTAACTATACCTATCA+TGG | - | chr3_3:64352899-64352918 | Msa0464410:intron | 25.0% |
! | TAGTTAACTATACCTATCAT+GGG | - | chr3_3:64352900-64352919 | Msa0464410:intron | 25.0% |
! | ATAATACCGGTCAAAATTAT+TGG | - | chr3_3:64352946-64352965 | Msa0464410:intron | 25.0% |
! | TATATGAGACCATATATATG+TGG | + | chr3_3:64353095-64353114 | None:intergenic | 25.0% |
! | ATAAAGTCTCTTCGAATAAA+AGG | - | chr3_3:64353314-64353333 | Msa0464410:intron | 25.0% |
! | GTATATAGTACCACAATAAA+AGG | - | chr3_3:64353428-64353447 | Msa0464410:intron | 25.0% |
! | TAAAGAAAGTCAAACTACTA+AGG | - | chr3_3:64353834-64353853 | Msa0464410:intron | 25.0% |
! | AAAGAAAGTCAAACTACTAA+GGG | - | chr3_3:64353835-64353854 | Msa0464410:intron | 25.0% |
! | TCTATCAAAGAAATTGTGTA+AGG | + | chr3_3:64353982-64354001 | None:intergenic | 25.0% |
!! | TATAATATATTGCATTGACG+TGG | - | chr3_3:64354113-64354132 | Msa0464410:intron | 25.0% |
! | GTTTAGATTATCGACAAATT+TGG | + | chr3_3:64354267-64354286 | None:intergenic | 25.0% |
!!! | TTCTAAAATCCGAAAACAAA+TGG | - | chr3_3:64354610-64354629 | Msa0464410:CDS | 25.0% |
!!! | ATAAACTCTCCATTTGTTTT+CGG | + | chr3_3:64354622-64354641 | None:intergenic | 25.0% |
TTTGGATAATTGCTTGAAAG+GGG | + | chr3_3:64348570-64348589 | None:intergenic | 30.0% | |
GATTTGGATAATTGCTTGAA+AGG | + | chr3_3:64348572-64348591 | None:intergenic | 30.0% | |
!! | CTCATTTTTGTTGAAGTGTT+TGG | + | chr3_3:64348676-64348695 | None:intergenic | 30.0% |
AAGATACTCATCAAACAGAT+AGG | - | chr3_3:64348755-64348774 | Msa0464410:three_prime_UTR | 30.0% | |
!!! | ATTAGTTTTTTCCATAGAGG+AGG | + | chr3_3:64348811-64348830 | None:intergenic | 30.0% |
TGTTTGTGAATATATACCTG+AGG | + | chr3_3:64349009-64349028 | None:intergenic | 30.0% | |
TATCTAATGTTGCAGAGTAT+TGG | - | chr3_3:64349105-64349124 | Msa0464410:intron | 30.0% | |
AGTTCAAGAGAAATTGCAAT+TGG | - | chr3_3:64349345-64349364 | Msa0464410:CDS | 30.0% | |
GATCCAGATTTAAATCATGA+TGG | - | chr3_3:64349420-64349439 | Msa0464410:intron | 30.0% | |
!!! | GGAATTTTTCAAGTTGCATT+TGG | - | chr3_3:64349480-64349499 | Msa0464410:CDS | 30.0% |
TAATTTAATCTGTTGCAGGT+TGG | - | chr3_3:64349578-64349597 | Msa0464410:intron | 30.0% | |
AATTTAATCTGTTGCAGGTT+GGG | - | chr3_3:64349579-64349598 | Msa0464410:intron | 30.0% | |
AATAAGAAGTGAGAAAACCA+AGG | + | chr3_3:64349886-64349905 | None:intergenic | 30.0% | |
!! | TTGGTTTTCTCACTTCTTAT+TGG | - | chr3_3:64349885-64349904 | Msa0464410:intron | 30.0% |
CGAAAGTAGAAACATATTTG+AGG | - | chr3_3:64350460-64350479 | Msa0464410:intron | 30.0% | |
!!! | GAACTGTTTTTTGTTTGACA+AGG | - | chr3_3:64350598-64350617 | Msa0464410:intron | 30.0% |
AAGATAAACATATTAGGCTC+GGG | - | chr3_3:64350622-64350641 | Msa0464410:intron | 30.0% | |
TTCCAATGACAAAATTCAGA+GGG | + | chr3_3:64350778-64350797 | None:intergenic | 30.0% | |
CCATAAATCTTGCAAACAAA+AGG | + | chr3_3:64350817-64350836 | None:intergenic | 30.0% | |
!! | CCTTTTGTTTGCAAGATTTA+TGG | - | chr3_3:64350814-64350833 | Msa0464410:intron | 30.0% |
GATAATATAACTGACACTAG+AGG | + | chr3_3:64350968-64350987 | None:intergenic | 30.0% | |
!! | AACCCCATTTTTATCTGTTT+TGG | + | chr3_3:64351011-64351030 | None:intergenic | 30.0% |
TGTAATTGATGAATTGAGCT+TGG | + | chr3_3:64351067-64351086 | None:intergenic | 30.0% | |
! | TTGTGTTTTATAGGAAGCAA+TGG | - | chr3_3:64351257-64351276 | Msa0464410:CDS | 30.0% |
ATTAAAGGATACCATCTAGA+TGG | - | chr3_3:64351303-64351322 | Msa0464410:CDS | 30.0% | |
TTAAAGGATACCATCTAGAT+GGG | - | chr3_3:64351304-64351323 | Msa0464410:CDS | 30.0% | |
GAACAAAGAAATGTTAGCAA+TGG | - | chr3_3:64351326-64351345 | Msa0464410:intron | 30.0% | |
ACATTTCAAACACACGAAAT+CGG | + | chr3_3:64351684-64351703 | None:intergenic | 30.0% | |
! | TTTTTGTCGAGATATCCAAT+CGG | + | chr3_3:64351870-64351889 | None:intergenic | 30.0% |
AATTAATCACCGAGAAAACA+TGG | - | chr3_3:64351888-64351907 | Msa0464410:intron | 30.0% | |
! | AAGTATTCACCATGTTTTCT+CGG | + | chr3_3:64351900-64351919 | None:intergenic | 30.0% |
TATAACAGTGATTCTGTGTT+TGG | - | chr3_3:64352098-64352117 | Msa0464410:intron | 30.0% | |
! | TGTGTTTGGAATTGTTTACA+AGG | - | chr3_3:64352112-64352131 | Msa0464410:intron | 30.0% |
TCTCTTATGTCAATTAATCC+TGG | + | chr3_3:64352192-64352211 | None:intergenic | 30.0% | |
!! | TAAGAGAAGCTTGCTATATA+TGG | - | chr3_3:64352205-64352224 | Msa0464410:intron | 30.0% |
TTAAGCACCCGTTAATTTAT+TGG | + | chr3_3:64352542-64352561 | None:intergenic | 30.0% | |
AGTTAACTATACCTATCATG+GGG | - | chr3_3:64352901-64352920 | Msa0464410:intron | 30.0% | |
ATCCACTAGTGTAATAATAC+CGG | - | chr3_3:64352933-64352952 | Msa0464410:intron | 30.0% | |
AAGTGAGTTCCATCATAATT+TGG | - | chr3_3:64353012-64353031 | Msa0464410:intron | 30.0% | |
AAATCCATGCCAAATTATGA+TGG | + | chr3_3:64353024-64353043 | None:intergenic | 30.0% | |
TAATACAATCAATTCGACCT+GGG | - | chr3_3:64353511-64353530 | Msa0464410:intron | 30.0% | |
! | ATATTGACTAACATCACAGA+AGG | + | chr3_3:64353571-64353590 | None:intergenic | 30.0% |
TTACCTTTCTCTTACAACAT+TGG | + | chr3_3:64353664-64353683 | None:intergenic | 30.0% | |
TTGATGAATGTTGATACTTC+TGG | - | chr3_3:64354003-64354022 | Msa0464410:CDS | 30.0% | |
!! | TACTTCTGGAATTATAGTAC+TGG | - | chr3_3:64354017-64354036 | Msa0464410:CDS | 30.0% |
!!! | TTTACTTTTGCAGTTTGCTA+TGG | - | chr3_3:64354332-64354351 | Msa0464410:intron | 30.0% |
AGTAATTCACAAGCTTAAAG+TGG | - | chr3_3:64354371-64354390 | Msa0464410:CDS | 30.0% | |
CACACTTTGTGGATAAAATT+GGG | - | chr3_3:64354394-64354413 | Msa0464410:CDS | 30.0% | |
TGGATAAAATTGGGAAAGAA+TGG | - | chr3_3:64354403-64354422 | Msa0464410:CDS | 30.0% | |
GGATAAAATTGGGAAAGAAT+GGG | - | chr3_3:64354404-64354423 | Msa0464410:CDS | 30.0% | |
GTACAATTGGAATTGCATAT+AGG | - | chr3_3:64354516-64354535 | Msa0464410:CDS | 30.0% | |
GAAAACAAATGGAGAGTTTA+TGG | - | chr3_3:64354621-64354640 | Msa0464410:CDS | 30.0% | |
TTGTATCATCTCATCATTTC+TGG | - | chr3_3:64354836-64354855 | Msa0464410:five_prime_UTR | 30.0% | |
TGTATCATCTCATCATTTCT+GGG | - | chr3_3:64354837-64354856 | Msa0464410:five_prime_UTR | 30.0% | |
ATTGGCAAGCATAAATAGAG+CGG | - | chr3_3:64348396-64348415 | Msa0464410:three_prime_UTR | 35.0% | |
GGATTTATACTCATCTTCAC+AGG | - | chr3_3:64348435-64348454 | Msa0464410:three_prime_UTR | 35.0% | |
TGTCAAGGGTCAATTTGATT+TGG | + | chr3_3:64348588-64348607 | None:intergenic | 35.0% | |
TACAGGACTAGATTTGTCAA+GGG | + | chr3_3:64348602-64348621 | None:intergenic | 35.0% | |
TTACAGGACTAGATTTGTCA+AGG | + | chr3_3:64348603-64348622 | None:intergenic | 35.0% | |
!! | CTCATATTGAAAGCATCAGA+GGG | + | chr3_3:64348706-64348725 | None:intergenic | 35.0% |
!! | TCTCATATTGAAAGCATCAG+AGG | + | chr3_3:64348707-64348726 | None:intergenic | 35.0% |
AATATGAGAGTCACAGAAGA+TGG | - | chr3_3:64348718-64348737 | Msa0464410:three_prime_UTR | 35.0% | |
! | TTCATGGCAAGTTCTTTTCT+TGG | + | chr3_3:64348869-64348888 | None:intergenic | 35.0% |
GCAAAACTTGATCCTCAATA+TGG | - | chr3_3:64349141-64349160 | Msa0464410:intron | 35.0% | |
ATCAACCACTTTGTGACATA+GGG | + | chr3_3:64349403-64349422 | None:intergenic | 35.0% | |
!! | AAGTTGCATTTGGAGTTTTC+AGG | - | chr3_3:64349490-64349509 | Msa0464410:CDS | 35.0% |
AGAAACCACATCAGATTTGT+TGG | + | chr3_3:64349715-64349734 | None:intergenic | 35.0% | |
! | ATCTGATGTGGTTTCTGTTT+TGG | - | chr3_3:64349719-64349738 | Msa0464410:CDS | 35.0% |
CTCCATCATCAAATTCTATC+CGG | - | chr3_3:64349759-64349778 | Msa0464410:CDS | 35.0% | |
AGAGAGAAAAATGAAGAGAG+AGG | - | chr3_3:64349921-64349940 | Msa0464410:intron | 35.0% | |
GAGAGAAAGTTGTCAAAAAG+TGG | - | chr3_3:64349967-64349986 | Msa0464410:intron | 35.0% | |
ACTAACAAAGAACACACTCA+AGG | + | chr3_3:64350414-64350433 | None:intergenic | 35.0% | |
CAGCAAAACTCACATAACAT+GGG | + | chr3_3:64350713-64350732 | None:intergenic | 35.0% | |
TCAGCAAAACTCACATAACA+TGG | + | chr3_3:64350714-64350733 | None:intergenic | 35.0% | |
! | TACCCTCTGAATTTTGTCAT+TGG | - | chr3_3:64350773-64350792 | Msa0464410:intron | 35.0% |
CTTCCAATGACAAAATTCAG+AGG | + | chr3_3:64350779-64350798 | None:intergenic | 35.0% | |
GATGAATTGAGCTTGGATTA+AGG | + | chr3_3:64351060-64351079 | None:intergenic | 35.0% | |
TTTCTTTGTTCCCATCTAGA+TGG | + | chr3_3:64351317-64351336 | None:intergenic | 35.0% | |
!! | AAATGTTAGCAATGGGTTGT+GGG | - | chr3_3:64351334-64351353 | Msa0464410:intron | 35.0% |
!! | GAATTCTGGCTTTCTTCTTT+GGG | + | chr3_3:64351516-64351535 | None:intergenic | 35.0% |
!! | TGAATTCTGGCTTTCTTCTT+TGG | + | chr3_3:64351517-64351536 | None:intergenic | 35.0% |
! | GATTTCGTGTGTTTGAAATG+TGG | - | chr3_3:64351683-64351702 | Msa0464410:intron | 35.0% |
CGTTTAGTTGAAGTTACATG+GGG | + | chr3_3:64351733-64351752 | None:intergenic | 35.0% | |
GCGTTTAGTTGAAGTTACAT+GGG | + | chr3_3:64351734-64351753 | None:intergenic | 35.0% | |
TGCGTTTAGTTGAAGTTACA+TGG | + | chr3_3:64351735-64351754 | None:intergenic | 35.0% | |
ATGAAATCAGCCTTCTTAAG+CGG | - | chr3_3:64351826-64351845 | Msa0464410:intron | 35.0% | |
!! | TATCCAATCGGTCATTTTGA+AGG | + | chr3_3:64351858-64351877 | None:intergenic | 35.0% |
GAGGATTATAGAAGCAAGTA+TGG | + | chr3_3:64352160-64352179 | None:intergenic | 35.0% | |
! | TTGTTTGTATCGGTAGAAAC+TGG | - | chr3_3:64352279-64352298 | Msa0464410:CDS | 35.0% |
CTTAATAGATTCAAGGTACG+TGG | + | chr3_3:64352500-64352519 | None:intergenic | 35.0% | |
AAAGACAAAGGAAGCTGAAT+AGG | - | chr3_3:64352972-64352991 | Msa0464410:intron | 35.0% | |
AGTTCCATCATAATTTGGCA+TGG | - | chr3_3:64353017-64353036 | Msa0464410:intron | 35.0% | |
GATTCTGGTCCACATATATA+TGG | - | chr3_3:64353083-64353102 | Msa0464410:intron | 35.0% | |
GTAATACAATCAATTCGACC+TGG | - | chr3_3:64353510-64353529 | Msa0464410:intron | 35.0% | |
TGATGTTAGTCAATATCCCA+TGG | - | chr3_3:64353575-64353594 | Msa0464410:intron | 35.0% | |
ATGCCAATGTTGTAAGAGAA+AGG | - | chr3_3:64353658-64353677 | Msa0464410:CDS | 35.0% | |
ATTGTTCCAGAATACTCAAG+TGG | - | chr3_3:64353791-64353810 | Msa0464410:intron | 35.0% | |
TTGTTCCAGAATACTCAAGT+GGG | - | chr3_3:64353792-64353811 | Msa0464410:intron | 35.0% | |
AAAGTCAAACTACTAAGGGA+AGG | - | chr3_3:64353839-64353858 | Msa0464410:intron | 35.0% | |
AAGTCAAACTACTAAGGGAA+GGG | - | chr3_3:64353840-64353859 | Msa0464410:intron | 35.0% | |
!! | TTCTGGAATTATAGTACTGG+AGG | - | chr3_3:64354020-64354039 | Msa0464410:CDS | 35.0% |
ACTACCATGAGTCTCAATAT+TGG | - | chr3_3:64354083-64354102 | Msa0464410:intron | 35.0% | |
CTACCATGAGTCTCAATATT+GGG | - | chr3_3:64354084-64354103 | Msa0464410:intron | 35.0% | |
CAAAGATGTTACCACATGTT+TGG | - | chr3_3:64354142-64354161 | Msa0464410:intron | 35.0% | |
TTACCACATGTTTGGATTGA+CGG | - | chr3_3:64354150-64354169 | Msa0464410:intron | 35.0% | |
TTTGGATTGACGGTTAGATT+TGG | - | chr3_3:64354160-64354179 | Msa0464410:intron | 35.0% | |
GCACACTTTGTGGATAAAAT+TGG | - | chr3_3:64354393-64354412 | Msa0464410:CDS | 35.0% | |
! | CTAGACAAACTGAAGTTTTG+AGG | + | chr3_3:64354583-64354602 | None:intergenic | 35.0% |
AACAAATGGAGAGTTTATGG+AGG | - | chr3_3:64354624-64354643 | Msa0464410:CDS | 35.0% | |
! | TCTATCACCCTACGTTATTT+TGG | + | chr3_3:64354687-64354706 | None:intergenic | 35.0% |
TGATAGAGAAACTAGTAGAG+TGG | - | chr3_3:64354700-64354719 | Msa0464410:five_prime_UTR | 35.0% | |
TGTCAATATATGTCTCCGAT+CGG | - | chr3_3:64354757-64354776 | Msa0464410:five_prime_UTR | 35.0% | |
TGTCAATATATGTCTCCGAT+CGG | - | chr3_3:64354757-64354776 | Msa0464410:five_prime_UTR | 35.0% | |
ATGAGATGATACAATCCGAT+CGG | + | chr3_3:64354830-64354849 | None:intergenic | 35.0% | |
TTGGCAAGCATAAATAGAGC+GGG | - | chr3_3:64348397-64348416 | Msa0464410:three_prime_UTR | 40.0% | |
TCTTGTGGCATCTCTTAGAT+TGG | + | chr3_3:64348495-64348514 | None:intergenic | 40.0% | |
ATCAAACAGATAGGACACAG+TGG | - | chr3_3:64348764-64348783 | Msa0464410:three_prime_UTR | 40.0% | |
!!! | AGTTTTTTCCATAGAGGAGG+TGG | + | chr3_3:64348808-64348827 | None:intergenic | 40.0% |
! | ATCCTCAATATGGCTTGTGT+AGG | - | chr3_3:64349151-64349170 | Msa0464410:intron | 40.0% |
TACCTACACAAGCCATATTG+AGG | + | chr3_3:64349156-64349175 | None:intergenic | 40.0% | |
!! | TTGGTTTTCAGACACAAGTG+TGG | - | chr3_3:64349293-64349312 | Msa0464410:CDS | 40.0% |
ATCACAGCATAGATAAGAGG+AGG | + | chr3_3:64349321-64349340 | None:intergenic | 40.0% | |
TCCTCTTATCTATGCTGTGA+TGG | - | chr3_3:64349320-64349339 | Msa0464410:CDS | 40.0% | |
CCTCTTATCTATGCTGTGAT+GGG | - | chr3_3:64349321-64349340 | Msa0464410:CDS | 40.0% | |
CTCTTATCTATGCTGTGATG+GGG | - | chr3_3:64349322-64349341 | Msa0464410:CDS | 40.0% | |
ATCTTCCCTATGTCACAAAG+TGG | - | chr3_3:64349395-64349414 | Msa0464410:intron | 40.0% | |
GATCAACCACTTTGTGACAT+AGG | + | chr3_3:64349404-64349423 | None:intergenic | 40.0% | |
!! | ATTGGTCTTCAGCAGCTTAA+GGG | - | chr3_3:64349666-64349685 | Msa0464410:intron | 40.0% |
CTTCACCAACAAATCTGATG+TGG | - | chr3_3:64349707-64349726 | Msa0464410:CDS | 40.0% | |
CTCCGGATAGAATTTGATGA+TGG | + | chr3_3:64349764-64349783 | None:intergenic | 40.0% | |
GACAACTTTGTTGACAACCT+TGG | - | chr3_3:64349866-64349885 | Msa0464410:intron | 40.0% | |
AAAACTCACATAACATGGGC+GGG | + | chr3_3:64350709-64350728 | None:intergenic | 40.0% | |
CAAAACTCACATAACATGGG+CGG | + | chr3_3:64350710-64350729 | None:intergenic | 40.0% | |
CAACTCAATGGTGAACATGT+TGG | - | chr3_3:64351085-64351104 | Msa0464410:CDS | 40.0% | |
GTTGGACAAGCAGCTAAAAT+TGG | - | chr3_3:64351103-64351122 | Msa0464410:CDS | 40.0% | |
TTATAGGAAGCAATGGCTGT+TGG | - | chr3_3:64351264-64351283 | Msa0464410:CDS | 40.0% | |
!! | GAAATGTTAGCAATGGGTTG+TGG | - | chr3_3:64351333-64351352 | Msa0464410:intron | 40.0% |
ACTTCATGCTATGTTGCAAC+TGG | - | chr3_3:64351375-64351394 | Msa0464410:intron | 40.0% | |
CACGTTTGATTACAGACCAT+CGG | - | chr3_3:64351753-64351772 | Msa0464410:intron | 40.0% | |
TTGTGTATTTGGATGTCCGA+TGG | + | chr3_3:64351772-64351791 | None:intergenic | 40.0% | |
TCTCCTTCAAAATGACCGAT+TGG | - | chr3_3:64351852-64351871 | Msa0464410:intron | 40.0% | |
! | TTTGACTTCCTTGCTTGCAT+TGG | - | chr3_3:64352240-64352259 | Msa0464410:CDS | 40.0% |
!! | CTTCGGTGTCTTGTTTGTAT+CGG | - | chr3_3:64352269-64352288 | Msa0464410:CDS | 40.0% |
GACCGGTATTATTACACTAG+TGG | + | chr3_3:64352938-64352957 | None:intergenic | 40.0% | |
TCTTGTTCTGTACTACCTTG+TGG | - | chr3_3:64353056-64353075 | Msa0464410:intron | 40.0% | |
CTACCTTGTGGAATAGATTC+TGG | - | chr3_3:64353068-64353087 | Msa0464410:intron | 40.0% | |
TTGGTCATTCGTATAAGCTC+TGG | - | chr3_3:64353618-64353637 | Msa0464410:CDS | 40.0% | |
AAGGGTCCAAGCTGTAATAT+TGG | - | chr3_3:64353858-64353877 | Msa0464410:CDS | 40.0% | |
CCATGTCCAATATTACAGCT+TGG | + | chr3_3:64353867-64353886 | None:intergenic | 40.0% | |
CCAAGCTGTAATATTGGACA+TGG | - | chr3_3:64353864-64353883 | Msa0464410:CDS | 40.0% | |
!! | TAGTCTCACTTTTATGCCAC+GGG | + | chr3_3:64354067-64354086 | None:intergenic | 40.0% |
!! | GTAGTCTCACTTTTATGCCA+CGG | + | chr3_3:64354068-64354087 | None:intergenic | 40.0% |
AGTCCCAATATTGAGACTCA+TGG | + | chr3_3:64354090-64354109 | None:intergenic | 40.0% | |
TAACCGTCAATCCAAACATG+TGG | + | chr3_3:64354156-64354175 | None:intergenic | 40.0% | |
TGTGAATTACTACCCACCTT+GGG | + | chr3_3:64354362-64354381 | None:intergenic | 40.0% | |
TTGTGAATTACTACCCACCT+TGG | + | chr3_3:64354363-64354382 | None:intergenic | 40.0% | |
GGTCAGCGAATTTATAAGAC+AGG | + | chr3_3:64354464-64354483 | None:intergenic | 40.0% | |
AAAACGACCCGTGAAATCAT+GGG | + | chr3_3:64354485-64354504 | None:intergenic | 40.0% | |
AAAAACGACCCGTGAAATCA+TGG | + | chr3_3:64354486-64354505 | None:intergenic | 40.0% | |
TTGAGGATGACAAGAAACTC+TGG | + | chr3_3:64354566-64354585 | None:intergenic | 40.0% | |
TGGCAAGCATAAATAGAGCG+GGG | - | chr3_3:64348398-64348417 | Msa0464410:three_prime_UTR | 45.0% | |
GAGAGGATACTTGTGTCTTG+TGG | + | chr3_3:64348510-64348529 | None:intergenic | 45.0% | |
GAAGGCTATGTATGACTGAG+AGG | + | chr3_3:64348527-64348546 | None:intergenic | 45.0% | |
! | TTCCATAGAGGAGGTGGATT+TGG | + | chr3_3:64348802-64348821 | None:intergenic | 45.0% |
! | TGCTAGCTTAAGCATACCTC+AGG | - | chr3_3:64348990-64349009 | Msa0464410:CDS | 45.0% |
CCCATCACAGCATAGATAAG+AGG | + | chr3_3:64349324-64349343 | None:intergenic | 45.0% | |
! | TTGCAGGTTGGGATTTCTTG+TGG | - | chr3_3:64349590-64349609 | Msa0464410:intron | 45.0% |
TTGTCACATGCTGCACTTGT+AGG | - | chr3_3:64349618-64349637 | Msa0464410:intron | 45.0% | |
TGCTGCACTTGTAGGATTCA+TGG | - | chr3_3:64349626-64349645 | Msa0464410:intron | 45.0% | |
CTGCTGAAGACCAATCATGA+TGG | + | chr3_3:64349661-64349680 | None:intergenic | 45.0% | |
!! | GATTGGTCTTCAGCAGCTTA+AGG | - | chr3_3:64349665-64349684 | Msa0464410:intron | 45.0% |
! | TTGGTCTTCAGCAGCTTAAG+GGG | - | chr3_3:64349667-64349686 | Msa0464410:intron | 45.0% |
AAACTCACATAACATGGGCG+GGG | + | chr3_3:64350708-64350727 | None:intergenic | 45.0% | |
AAGGAGATCTCCGCTTAAGA+AGG | + | chr3_3:64351839-64351858 | None:intergenic | 45.0% | |
GCTGTTATATTACACCCCTG+TGG | - | chr3_3:64352134-64352153 | Msa0464410:intron | 45.0% | |
TAGAAGCAAGTATGGCCACA+GGG | + | chr3_3:64352152-64352171 | None:intergenic | 45.0% | |
ATAGAAGCAAGTATGGCCAC+AGG | + | chr3_3:64352153-64352172 | None:intergenic | 45.0% | |
ATAATCCTCTCTGCACTTCC+AGG | - | chr3_3:64352171-64352190 | Msa0464410:intron | 45.0% | |
! | TTAATCCTGGAAGTGCAGAG+AGG | + | chr3_3:64352179-64352198 | None:intergenic | 45.0% |
!! | AGAAAGCACCAATGCAAGCA+AGG | + | chr3_3:64352251-64352270 | None:intergenic | 45.0% |
! | GCTTGCATTGGTGCTTTCTT+CGG | - | chr3_3:64352252-64352271 | Msa0464410:CDS | 45.0% |
ACTATACCTATCATGGGGTG+AGG | - | chr3_3:64352906-64352925 | Msa0464410:intron | 45.0% | |
CTATACCTATCATGGGGTGA+GGG | - | chr3_3:64352907-64352926 | Msa0464410:intron | 45.0% | |
ATTAACCCTCACCCCATGAT+AGG | + | chr3_3:64352915-64352934 | None:intergenic | 45.0% | |
GGACCAGAATCTATTCCACA+AGG | + | chr3_3:64353074-64353093 | None:intergenic | 45.0% | |
CTACCAAGAACTTCTATCCC+AGG | + | chr3_3:64353531-64353550 | None:intergenic | 45.0% | |
TCACAGAAGGCTTGTGTTGT+TGG | + | chr3_3:64353558-64353577 | None:intergenic | 45.0% | |
ATACGAATGACCAAGATGCC+TGG | + | chr3_3:64353612-64353631 | None:intergenic | 45.0% | |
AGTGACCCACTTGAGTATTC+TGG | + | chr3_3:64353800-64353819 | None:intergenic | 45.0% | |
!! | AGTTTGCTATGGTGAACCCA+AGG | - | chr3_3:64354343-64354362 | Msa0464410:intron | 45.0% |
GCTTAAAGTGGCACACTTTG+TGG | - | chr3_3:64354383-64354402 | Msa0464410:CDS | 45.0% | |
CCACAGCTTCAGAAACAGTA+AGG | + | chr3_3:64354434-64354453 | None:intergenic | 45.0% | |
!! | CCTTACTGTTTCTGAAGCTG+TGG | - | chr3_3:64354431-64354450 | Msa0464410:CDS | 45.0% |
TTCGCTGACCCATGATTTCA+CGG | - | chr3_3:64354474-64354493 | Msa0464410:CDS | 45.0% | |
!!! | AATTTTAAAAAAAAAAACTA+AGG | + | chr3_3:64351181-64351200 | None:intergenic | 5.0% |
!!! | TATTTTATTTGTTTTATAAT+TGG | - | chr3_3:64351983-64352002 | Msa0464410:CDS | 5.0% |
!!! | TTATAATTTTTTTCAAAAAT+TGG | - | chr3_3:64352399-64352418 | Msa0464410:CDS | 5.0% |
!! | TAAAATTGTTAATTAATTTA+GGG | + | chr3_3:64352767-64352786 | None:intergenic | 5.0% |
!! | ATAAAATTGTTAATTAATTT+AGG | + | chr3_3:64352768-64352787 | None:intergenic | 5.0% |
!!! | TAAATTAATTAACAATTTTA+TGG | - | chr3_3:64352767-64352786 | Msa0464410:intron | 5.0% |
GGCAAGCATAAATAGAGCGG+GGG | - | chr3_3:64348399-64348418 | Msa0464410:three_prime_UTR | 50.0% | |
GCAAGCATAAATAGAGCGGG+GGG | - | chr3_3:64348400-64348419 | Msa0464410:three_prime_UTR | 50.0% | |
CAAGCATAAATAGAGCGGGG+GGG | - | chr3_3:64348401-64348420 | Msa0464410:three_prime_UTR | 50.0% | |
AAGCATAAATAGAGCGGGGG+GGG | - | chr3_3:64348402-64348421 | Msa0464410:three_prime_UTR | 50.0% | |
CACCAAATCCACCTCCTCTA+TGG | - | chr3_3:64348797-64348816 | Msa0464410:three_prime_UTR | 50.0% | |
AGCAGTGACACTACAGCTAC+AGG | + | chr3_3:64349372-64349391 | None:intergenic | 50.0% | |
GCACTTGTAGGATTCATGGC+AGG | - | chr3_3:64349630-64349649 | Msa0464410:intron | 50.0% | |
AGCAGCTTAAGGGGTTGCTT+GGG | - | chr3_3:64349676-64349695 | Msa0464410:intron | 50.0% | |
GACACTAGAGGAGCAATAGC+TGG | + | chr3_3:64350956-64350975 | None:intergenic | 50.0% | |
! | ATGGGTTGTGGGAACATTGC+AGG | - | chr3_3:64351345-64351364 | Msa0464410:intron | 50.0% |
GCTATGTTGCAACTGGTGAG+TGG | - | chr3_3:64351382-64351401 | Msa0464410:intron | 50.0% | |
AGAAGCAAGTATGGCCACAG+GGG | + | chr3_3:64352151-64352170 | None:intergenic | 50.0% | |
CGACCTGGGATAGAAGTTCT+TGG | - | chr3_3:64353525-64353544 | Msa0464410:intron | 50.0% | |
TACAAGCACTCCAGGCATCT+TGG | - | chr3_3:64353599-64353618 | Msa0464410:CDS | 50.0% | |
TACTGGAGGAACTGCACAAG+AGG | - | chr3_3:64354034-64354053 | Msa0464410:CDS | 50.0% | |
TTGCTATGGTGAACCCAAGG+TGG | - | chr3_3:64354346-64354365 | Msa0464410:intron | 50.0% | |
TGCTATGGTGAACCCAAGGT+GGG | - | chr3_3:64354347-64354366 | Msa0464410:intron | 50.0% | |
TCGCTGACCCATGATTTCAC+GGG | - | chr3_3:64354475-64354494 | Msa0464410:CDS | 50.0% | |
AGCATAAATAGAGCGGGGGG+GGG | - | chr3_3:64348403-64348422 | Msa0464410:three_prime_UTR | 55.0% | |
GCAGGTGCAGCCATCATGAT+TGG | - | chr3_3:64349648-64349667 | Msa0464410:intron | 55.0% | |
CAGCAGCTTAAGGGGTTGCT+TGG | - | chr3_3:64349675-64349694 | Msa0464410:intron | 55.0% | |
! | CCTGGAGTGCTTGTAGCCAT+GGG | + | chr3_3:64353594-64353613 | None:intergenic | 55.0% |
GCATAAATAGAGCGGGGGGG+GGG | - | chr3_3:64348404-64348423 | Msa0464410:three_prime_UTR | 60.0% | |
CATAAATAGAGCGGGGGGGG+GGG | - | chr3_3:64348405-64348424 | Msa0464410:three_prime_UTR | 60.0% | |
ATAAATAGAGCGGGGGGGGG+GGG | - | chr3_3:64348406-64348425 | Msa0464410:three_prime_UTR | 60.0% | |
CCCATGGCTACAAGCACTCC+AGG | - | chr3_3:64353591-64353610 | Msa0464410:CDS | 60.0% | |
! | GCCTGGAGTGCTTGTAGCCA+TGG | + | chr3_3:64353595-64353614 | None:intergenic | 60.0% |
CACAAGAGGTTGCTCTCCCG+TGG | - | chr3_3:64354048-64354067 | Msa0464410:intron | 60.0% | |
TAAATAGAGCGGGGGGGGGG+GGG | - | chr3_3:64348407-64348426 | Msa0464410:three_prime_UTR | 65.0% | |
AAATAGAGCGGGGGGGGGGG+GGG | - | chr3_3:64348408-64348427 | Msa0464410:three_prime_UTR | 70.0% | |
AATAGAGCGGGGGGGGGGGG+GGG | - | chr3_3:64348409-64348428 | Msa0464410:three_prime_UTR | 75.0% | |
! | ATAGAGCGGGGGGGGGGGGG+GGG | - | chr3_3:64348410-64348429 | Msa0464410:three_prime_UTR | 80.0% |
! | TAGAGCGGGGGGGGGGGGGG+GGG | - | chr3_3:64348411-64348430 | Msa0464410:three_prime_UTR | 85.0% |
! | AGAGCGGGGGGGGGGGGGGG+GGG | - | chr3_3:64348412-64348431 | Msa0464410:three_prime_UTR | 90.0% |
! | GAGCGGGGGGGGGGGGGGGG+GGG | - | chr3_3:64348413-64348432 | Msa0464410:three_prime_UTR | 95.0% |
! | AGCGGGGGGGGGGGGGGGGG+GGG | - | chr3_3:64348414-64348433 | Msa0464410:three_prime_UTR | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 64348356 | 64355009 | 64348356 | ID=Msa0464410;Name=Msa0464410 |
chr3_3 | mRNA | 64348356 | 64355009 | 64348356 | ID=Msa0464410-mRNA-1;Parent=Msa0464410;Name=Msa0464410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=335|1|1|1|0.91|0.84|13|466|660 |
chr3_3 | exon | 64348356 | 64348557 | 64348356 | ID=Msa0464410-mRNA-1:exon:14123;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64348613 | 64349020 | 64348613 | ID=Msa0464410-mRNA-1:exon:14122;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64349288 | 64349364 | 64349288 | ID=Msa0464410-mRNA-1:exon:14121;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64349476 | 64349564 | 64349476 | ID=Msa0464410-mRNA-1:exon:14120;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64349686 | 64349879 | 64349686 | ID=Msa0464410-mRNA-1:exon:14119;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64351051 | 64351337 | 64351051 | ID=Msa0464410-mRNA-1:exon:14118;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64351969 | 64352095 | 64351969 | ID=Msa0464410-mRNA-1:exon:14117;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64352212 | 64352442 | 64352212 | ID=Msa0464410-mRNA-1:exon:14116;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64352530 | 64352595 | 64352530 | ID=Msa0464410-mRNA-1:exon:14115;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64353580 | 64353769 | 64353580 | ID=Msa0464410-mRNA-1:exon:14114;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64353854 | 64354061 | 64353854 | ID=Msa0464410-mRNA-1:exon:14113;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64354197 | 64354245 | 64354197 | ID=Msa0464410-mRNA-1:exon:14112;Parent=Msa0464410-mRNA-1 |
chr3_3 | exon | 64354354 | 64355009 | 64354354 | ID=Msa0464410-mRNA-1:exon:14111;Parent=Msa0464410-mRNA-1 |
chr3_3 | five_prime_UTR | 64354675 | 64355009 | 64354675 | ID=Msa0464410-mRNA-1:five_prime_utr;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64354354 | 64354674 | 64354354 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64354197 | 64354245 | 64354197 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64353854 | 64354061 | 64353854 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64353580 | 64353769 | 64353580 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64352530 | 64352595 | 64352530 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64352212 | 64352442 | 64352212 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64351969 | 64352095 | 64351969 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64351051 | 64351337 | 64351051 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64349686 | 64349879 | 64349686 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64349476 | 64349564 | 64349476 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64349288 | 64349364 | 64349288 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | CDS | 64348877 | 64349020 | 64348877 | ID=Msa0464410-mRNA-1:cds;Parent=Msa0464410-mRNA-1 |
chr3_3 | three_prime_UTR | 64348613 | 64348876 | 64348613 | ID=Msa0464410-mRNA-1:three_prime_utr;Parent=Msa0464410-mRNA-1 |
chr3_3 | three_prime_UTR | 64348356 | 64348557 | 64348356 | ID=Msa0464410-mRNA-1:three_prime_utr;Parent=Msa0464410-mRNA-1 |
Gene Sequence |
Protein sequence |