AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548230 MtrunA17_Chr4g0032081 96.564 553 19 0 1 553 1 553 0.0 1074
Msa0548230 MtrunA17_Chr4g0034391 26.199 271 170 9 91 345 71 327 9.33e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548230 AT3G46780.1 57.643 543 169 12 18 553 22 510 0.0 539
Msa0548230 AT3G18890.1 24.806 258 166 8 102 345 84 327 1.60e-14 77.0

Find 171 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATCCTCATCAGGCTTT+TGG 0.176821 4_1:-41993991 None:intergenic
CTGTGTTAATGCTGATAATT+TGG 0.194018 4_1:+41994273 Msa0548230:three_prime_UTR
TCCCTTGAGGTATCTTTAAT+TGG 0.206869 4_1:-41994723 None:intergenic
GGTTTACTCACACTGCTTCT+TGG 0.261784 4_1:-41994103 None:intergenic
AACATAGTAATGTTTATCTT+TGG 0.289226 4_1:-41991107 None:intergenic
TTGCAACCGGCAAAAGGTTT+TGG 0.289282 4_1:+41993920 Msa0548230:CDS
CATAGACATTGAACCTTGTT+TGG 0.291322 4_1:-41991268 None:intergenic
AAAGTTCGTCTACACGCTTC+AGG 0.292266 4_1:-41993444 None:intergenic
CCTTCGACGGTATTTGTTGC+TGG 0.292997 4_1:+41991506 Msa0548230:CDS
TCTTATAATGTGGTTGTCTT+AGG 0.298572 4_1:+41992789 Msa0548230:CDS
ACGGTGGCAACTTGCACCTT+TGG 0.301454 4_1:-41994016 None:intergenic
AAGGAGGTTAGGAAGGTATT+TGG 0.303897 4_1:+41994160 Msa0548230:CDS
GGAGGGTCATTTCCATCATT+TGG 0.308563 4_1:+41991305 Msa0548230:CDS
TCGTCTTGCTTCTCAATATA+AGG 0.316319 4_1:+41991631 Msa0548230:CDS
GCTTTCCTTCTTCCGTCTTC+CGG 0.318173 4_1:-41993596 None:intergenic
TGTTTAGTCACTGCTTTGTT+AGG 0.318987 4_1:-41994070 None:intergenic
TCTTGCCTCTTCCTCTGCTT+TGG 0.320316 4_1:-41993642 None:intergenic
ACACGCTTCAGGGGAGCATT+TGG 0.321580 4_1:-41993433 None:intergenic
CGGTGGCAACTTGCACCTTT+GGG 0.328678 4_1:-41994015 None:intergenic
AACTCCTCAAAGTATGCAAT+TGG 0.328852 4_1:+41994429 Msa0548230:three_prime_UTR
TCATTTCCATCATTTGGATT+AGG 0.331642 4_1:+41991311 Msa0548230:CDS
GAAAGCCTATGCTGAAATAT+TGG 0.333830 4_1:+41993613 Msa0548230:CDS
ACTTGATTCTGCTCAGGAAT+TGG 0.345531 4_1:+41991607 Msa0548230:CDS
GTAATGTTTATCTTTGGCTT+TGG 0.350142 4_1:-41991101 None:intergenic
TCTTTGCCAGGTTTGTCATT+TGG 0.367736 4_1:+41991461 Msa0548230:CDS
TTTGGTTTCTCATCCTCATC+AGG 0.375836 4_1:-41993896 None:intergenic
AACTCTAATAATAACCCTTT+CGG 0.379619 4_1:+41991377 Msa0548230:CDS
TTTGGGTTCTCATCCTCATC+AGG 0.381648 4_1:-41993998 None:intergenic
CAAGAGAAGGCAGAGGCAAC+TGG 0.382618 4_1:+41993776 Msa0548230:CDS
GACGTGGAGACCTCAGTTGC+TGG 0.382640 4_1:-41992516 None:intergenic
TTTGGACCGTTAATCTAGTT+TGG 0.388044 4_1:-41991083 None:intergenic
GGTGTTCAATATTTCTTCAA+TGG 0.392168 4_1:+41990982 None:intergenic
CCACCCAATTGCATACTTTG+AGG 0.392950 4_1:-41994433 None:intergenic
TTAATCTAGTTTGGTGTTTG+TGG 0.398196 4_1:-41991074 None:intergenic
AGGAGAAACCGAAGGAGGTT+AGG 0.400481 4_1:+41994149 Msa0548230:CDS
CACGCTTCAGGGGAGCATTT+GGG 0.403880 4_1:-41993432 None:intergenic
AACCCTTTCGGATTCGACTT+TGG 0.404280 4_1:+41991389 Msa0548230:CDS
AGATAGTCTCTTGTTTGAAC+AGG 0.404451 4_1:-41994186 None:intergenic
TGACTTCTTTGATCCCTGTT+GGG 0.407851 4_1:+41991426 Msa0548230:CDS
TCAACCTACAATGTACTTGA+TGG 0.408054 4_1:+41992627 Msa0548230:CDS
TCCTGAGCAGAATCAAGTTC+AGG 0.410852 4_1:-41991602 None:intergenic
TACTTTATAGTCGTTCGAAC+CGG 0.411446 4_1:-41992823 None:intergenic
GTATTTGTTGCTGGTGCTAC+TGG 0.412386 4_1:+41991515 Msa0548230:CDS
AACCATGTAATCAGATTAGC+AGG 0.417247 4_1:+41994363 Msa0548230:three_prime_UTR
GGCAGAGGCAACTGGAACTT+CGG 0.418026 4_1:+41993784 Msa0548230:CDS
TAATCTAGTTTGGTGTTTGT+GGG 0.423617 4_1:-41991073 None:intergenic
CGATACGAAATCAATTTGTA+AGG 0.426499 4_1:+41994653 Msa0548230:three_prime_UTR
GTGACTTCTTTGATCCCTGT+TGG 0.430673 4_1:+41991425 Msa0548230:CDS
AATACCTTCCTAACCTCCTT+CGG 0.433617 4_1:-41994157 None:intergenic
GAAGGATCCTTCTTCCTTGT+AGG 0.435641 4_1:-41991488 None:intergenic
AACAGAGGGAGTAGAAATGA+GGG 0.436258 4_1:-41994695 None:intergenic
GAAGATATTGTTGAAGAAAG+AGG 0.437771 4_1:-41992655 None:intergenic
CTTGAGGTATCTTTAATTGG+AGG 0.445095 4_1:-41994720 None:intergenic
CAAACACCAAACTAGATTAA+CGG 0.447152 4_1:+41991077 Msa0548230:five_prime_UTR
CTTAGGATGAGATAAAGAAT+TGG 0.448913 4_1:-41991231 None:intergenic
AGATGCCTTGCAAGTAATTC+AGG 0.449862 4_1:+41992539 Msa0548230:CDS
GAAAGCCAAAGCAGAGGAAG+AGG 0.452766 4_1:+41993637 Msa0548230:CDS
TCCTGAACTTGATTCTGCTC+AGG 0.455608 4_1:+41991601 Msa0548230:CDS
AGTTTGATGAACCATTTGTT+TGG 0.455793 4_1:-41991358 None:intergenic
TGGTTCCTAAAATTCAACTT+AGG 0.457751 4_1:-41991248 None:intergenic
GGCAAGAGTGAAAGCTGAAA+AGG 0.458370 4_1:+41993658 Msa0548230:CDS
GTGCAAGTTGCCACCGTAAG+AGG 0.460111 4_1:+41994022 Msa0548230:CDS
CATTGCACAGACTTTGCTTA+GGG 0.461014 4_1:+41991553 Msa0548230:CDS
AGCCACCAACGATGCTATCC+TGG 0.462070 4_1:-41992963 None:intergenic
GACTCCATAGCAAAAGCAAT+AGG 0.462780 4_1:+41992447 Msa0548230:CDS
GCATTGCACAGACTTTGCTT+AGG 0.462895 4_1:+41991552 Msa0548230:CDS
TCCACTAGTGCTTGGCCTCA+AGG 0.469026 4_1:-41994549 None:intergenic
GTAAGCTAGATATAGCGAAT+TGG 0.470631 4_1:-41991030 None:intergenic
AACAAAGAGTGTGAACTTGT+TGG 0.472362 4_1:+41991167 Msa0548230:five_prime_UTR
CCAAAGTTGCAACCGGCAAA+AGG 0.474620 4_1:+41993914 Msa0548230:CDS
AGCCTTCGCCTGTCCTCTTA+CGG 0.481913 4_1:-41994035 None:intergenic
AAAGTATGCAATTGGGTGGC+AGG 0.482253 4_1:+41994437 Msa0548230:three_prime_UTR
AGGCCAAGCACTAGTGGACT+TGG 0.483727 4_1:+41994554 Msa0548230:three_prime_UTR
ATTCAGGCTGCTCAGCTAGC+AGG 0.485979 4_1:+41992555 Msa0548230:CDS
TGCTGCAACAACTAAGAAGA+TGG 0.488126 4_1:+41993691 Msa0548230:CDS
ACCAAAGTGGTTGTCACCAT+TGG 0.489290 4_1:+41992477 Msa0548230:CDS
GAACAGAGGGAGTAGAAATG+AGG 0.489759 4_1:-41994696 None:intergenic
TCAAGAGTTCTTGCAGAAAG+TGG 0.490402 4_1:+41992701 Msa0548230:CDS
ATAATTTGGTTGGACATGTA+TGG 0.492237 4_1:+41994287 Msa0548230:three_prime_UTR
TGAGAAACCAAAGTTGCAAC+CGG 0.495471 4_1:+41993907 Msa0548230:CDS
CCCTTGAGGCCAAGCACTAG+TGG 0.498863 4_1:+41994548 Msa0548230:three_prime_UTR
TTTCTCCAATATTTCAGCAT+AGG 0.501040 4_1:-41993618 None:intergenic
TAAAGAATTGGATGAAAGAG+TGG 0.503514 4_1:-41991219 None:intergenic
AAGTTCGTCTACACGCTTCA+GGG 0.503548 4_1:-41993443 None:intergenic
GATGCCATCAAGTACATTGT+AGG 0.505770 4_1:-41992631 None:intergenic
GTTAATGCTGATAATTTGGT+TGG 0.507509 4_1:+41994277 Msa0548230:three_prime_UTR
TGCAATTGGGTGGCAGGCGA+CGG 0.507970 4_1:+41994443 Msa0548230:three_prime_UTR
ACTCTCCGGCGCAAAATCAT+CGG 0.509928 4_1:-41992766 None:intergenic
CTCAAATTTCACATTAAAAG+CGG 0.510187 4_1:-41994512 None:intergenic
CCACTAGTGCTTGGCCTCAA+GGG 0.514000 4_1:-41994548 None:intergenic
GTGGGTGATAATTTGTTGCA+TGG 0.515287 4_1:+41994576 Msa0548230:three_prime_UTR
TTCCAAAGTCGAATCCGAAA+GGG 0.516074 4_1:-41991391 None:intergenic
CTATTCCGGAAGACGGAAGA+AGG 0.522679 4_1:+41993591 Msa0548230:CDS
CACAGACTTTGCTTAGGGAA+GGG 0.523241 4_1:+41991558 Msa0548230:CDS
GAAGGGTTTAGTGTTAGAGC+TGG 0.524692 4_1:+41991575 Msa0548230:CDS
ATGGCAAAAGTTCAGCTCAC+AGG 0.526351 4_1:+41993955 Msa0548230:CDS
ATCAAGTACATTGTAGGTTG+AGG 0.527543 4_1:-41992625 None:intergenic
GGGATCAAAGAAGTCACATC+AGG 0.527653 4_1:-41991419 None:intergenic
AAGGCAAAAGTTAAGCTCAC+AGG 0.530732 4_1:+41993853 Msa0548230:CDS
GCACAGACTTTGCTTAGGGA+AGG 0.531835 4_1:+41991557 Msa0548230:CDS
AATAGACAAAGGTTGAGACT+TGG 0.532124 4_1:-41992679 None:intergenic
AACTAAGAAGATGGAAGAAG+AGG 0.532351 4_1:+41993700 Msa0548230:CDS
TAAGAGGACAGGCGAAGGCT+CGG 0.536519 4_1:+41994038 Msa0548230:CDS
ACTCCTCAAAGTATGCAATT+GGG 0.536803 4_1:+41994430 Msa0548230:three_prime_UTR
CTCCAATTAAAGATACCTCA+AGG 0.539656 4_1:+41994721 Msa0548230:three_prime_UTR
ATCTTAACTATAACCATCCA+TGG 0.543508 4_1:+41991193 Msa0548230:exon
AGTTGCCACCGTAAGAGGAC+AGG 0.545851 4_1:+41994027 Msa0548230:CDS
GCTTTCAAAACAAGAAGCAC+AGG 0.545968 4_1:+41993730 Msa0548230:CDS
TGGAAGTCCTACAAGGAAGA+AGG 0.547484 4_1:+41991481 Msa0548230:CDS
GCTGGTGCTACTGGTCAAGC+TGG 0.548502 4_1:+41991524 Msa0548230:CDS
CCACCAAGTCCACTAGTGCT+TGG 0.550044 4_1:-41994557 None:intergenic
CACACAGGTTGCAGAAAACA+AGG 0.552585 4_1:+41993000 Msa0548230:CDS
CCAAGCACTAGTGGACTTGG+TGG 0.553022 4_1:+41994557 Msa0548230:three_prime_UTR
GGAATTATCTTGAATAGAAG+AGG 0.556658 4_1:-41991052 None:intergenic
TCCCTGCTAATCTGATTACA+TGG 0.562637 4_1:-41994365 None:intergenic
TTGATGATGACTAGTGGAAG+TGG 0.562771 4_1:+41994212 Msa0548230:exon
GCCGGAGAGTTCTTATAATG+TGG 0.563804 4_1:+41992779 Msa0548230:CDS
ATAGGTTGTGCAAGTGTACT+CGG 0.564585 4_1:+41993408 Msa0548230:intron
GAAAGAGTGGGAACCATGGA+TGG 0.564627 4_1:-41991206 None:intergenic
GTCCAGGATAGCATCGTTGG+TGG 0.569990 4_1:+41992961 Msa0548230:CDS
TTTCCAAAGTCGAATCCGAA+AGG 0.570601 4_1:-41991392 None:intergenic
TGTCATTTGGAAGTCCTACA+AGG 0.571301 4_1:+41991474 Msa0548230:CDS
TACAGCACTATTCCGGAAGA+CGG 0.572364 4_1:+41993584 Msa0548230:intron
ACCAATGGTGACAACCACTT+TGG 0.574757 4_1:-41992478 None:intergenic
AAAGTCCAGGATAGCATCGT+TGG 0.579546 4_1:+41992958 Msa0548230:CDS
TTTAATTGGAGGAGAACAGA+GGG 0.584320 4_1:-41994709 None:intergenic
GAGGTTAGGAAGGTATTTGG+TGG 0.585362 4_1:+41994163 Msa0548230:CDS
GAAACCGAAGGAGGTTAGGA+AGG 0.586267 4_1:+41994153 Msa0548230:CDS
TTATATAGGTAACAAAGTCC+AGG 0.589414 4_1:+41992945 Msa0548230:intron
TCTATATTGATGATGACTAG+TGG 0.595458 4_1:+41994206 Msa0548230:CDS
GAGGGAGTAGAAATGAGGGA+AGG 0.596880 4_1:-41994691 None:intergenic
AAAGAATTGGATGAAAGAGT+GGG 0.597103 4_1:-41991218 None:intergenic
TCAGATTATATCAAACGAAG+AGG 0.598598 4_1:+41992383 Msa0548230:intron
CACCGTAAGAGGACAGGCGA+AGG 0.599425 4_1:+41994033 Msa0548230:CDS
AGAAGATCAAGAGAAGGCAG+AGG 0.600588 4_1:+41993769 Msa0548230:CDS
AAAGATAGAGGAGAAACCGA+AGG 0.601183 4_1:+41994141 Msa0548230:CDS
AGCTAAAGAAGATCAAGAGA+AGG 0.604016 4_1:+41993763 Msa0548230:CDS
TACTTGCAAGGCATCTGACG+TGG 0.604597 4_1:-41992532 None:intergenic
ACCATTGGTCTCACAGAGAA+CGG 0.605549 4_1:+41992492 Msa0548230:CDS
TCCAATTAAAGATACCTCAA+GGG 0.607195 4_1:+41994722 Msa0548230:three_prime_UTR
CTTCGCCTGTCCTCTTACGG+TGG 0.611044 4_1:-41994032 None:intergenic
AGCAGCCTGAATTACTTGCA+AGG 0.614147 4_1:-41992544 None:intergenic
ACCGTTCTCTGTGAGACCAA+TGG 0.615314 4_1:-41992493 None:intergenic
ACCACATTATAAGAACTCTC+CGG 0.622153 4_1:-41992780 None:intergenic
CAGTGTGAGTAAACCAAAGG+AGG 0.623135 4_1:+41994111 Msa0548230:CDS
AAGCAGTGTGAGTAAACCAA+AGG 0.625751 4_1:+41994108 Msa0548230:CDS
GGACTTCCAAATGACAAACC+TGG 0.627955 4_1:-41991467 None:intergenic
TGAGACAATCATGTCCCTTG+AGG 0.631251 4_1:-41994736 None:intergenic
AAGAACTCTTGAATAGACAA+AGG 0.641968 4_1:-41992690 None:intergenic
GTATTTCGAATGCACCCTTG+AGG 0.642772 4_1:+41994534 Msa0548230:three_prime_UTR
AGTTCGTCTACACGCTTCAG+GGG 0.644617 4_1:-41993442 None:intergenic
AGAGAACGGTCCAGCAACTG+AGG 0.645643 4_1:+41992506 Msa0548230:CDS
CCAGCAACAAATACCGTCGA+AGG 0.645802 4_1:-41991506 None:intergenic
ATTGGAGAAAGCCAAAGCAG+AGG 0.656499 4_1:+41993631 Msa0548230:CDS
AGCAATCCAAAAGCCTGATG+AGG 0.656743 4_1:+41993985 Msa0548230:CDS
AAGGAAGAAGGATCCTTCGA+CGG 0.656966 4_1:+41991493 Msa0548230:CDS
AATAGGCAATGCAACCAAAG+TGG 0.658723 4_1:+41992464 Msa0548230:CDS
CTTTAATTGGAGGAGAACAG+AGG 0.659476 4_1:-41994710 None:intergenic
AACAAATCAAGATCCTGATG+AGG 0.661904 4_1:+41993883 Msa0548230:CDS
CCTCAAAGTATGCAATTGGG+TGG 0.663167 4_1:+41994433 Msa0548230:three_prime_UTR
GTCTTAGGCGAAGAAAACAC+CGG 0.671556 4_1:+41992804 Msa0548230:CDS
GGATGAAAGAGTGGGAACCA+TGG 0.674227 4_1:-41991210 None:intergenic
CAAGCACTAGTGGACTTGGT+GGG 0.675699 4_1:+41994558 Msa0548230:three_prime_UTR
TGATGTCTTCTCCAACACAC+AGG 0.677746 4_1:+41992985 Msa0548230:CDS
GATAGAGGAGAAACCGAAGG+AGG 0.690826 4_1:+41994144 Msa0548230:CDS
ATGGATAAACTCTGATTACG+TGG 0.692441 4_1:+41991001 Msa0548230:five_prime_UTR
TGATGAGGATGAGAACCCAA+AGG 0.696850 4_1:+41994000 Msa0548230:CDS
CATCGTAGAGGACTGCAACG+TGG 0.701831 4_1:-41992584 None:intergenic
ACCATGTAATCAGATTAGCA+GGG 0.713703 4_1:+41994364 Msa0548230:three_prime_UTR
TAAGCAAAGTCTGTGCAATG+CGG 0.730043 4_1:-41991550 None:intergenic
GTCCTCTACGATGAAAACAA+CGG 0.735412 4_1:+41992594 Msa0548230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGAAATTTTTCAT+TGG + chr4_1:41992329-41992348 Msa0548230:intron 10.0%
!! TTCTTAATCAATCATTAATT+TGG + chr4_1:41991668-41991687 Msa0548230:intron 15.0%
!! ATAAAAAAATTGAGTAAGTA+GGG - chr4_1:41992232-41992251 None:intergenic 15.0%
!! AACATAGTAATGTTTATCTT+TGG - chr4_1:41991110-41991129 None:intergenic 20.0%
!! AATTTGGATTATTAATGATC+AGG + chr4_1:41991684-41991703 Msa0548230:intron 20.0%
!!! AGAAAATAAGAGTATGTTTA+AGG - chr4_1:41991978-41991997 None:intergenic 20.0%
!! AATTTAATCTTTCAAACCTT+TGG - chr4_1:41992196-41992215 None:intergenic 20.0%
!! GATAAAAAAATTGAGTAAGT+AGG - chr4_1:41992233-41992252 None:intergenic 20.0%
!!! ACTCAATTTTTTTATCTAAC+AGG + chr4_1:41992237-41992256 Msa0548230:intron 20.0%
!!! AATTTTTCATTGGAGTTAAT+TGG + chr4_1:41992339-41992358 Msa0548230:intron 20.0%
!!! ATTTTTCATTGGAGTTAATT+GGG + chr4_1:41992340-41992359 Msa0548230:intron 20.0%
!!! AATACTTTTTGAGAAAATGA+TGG + chr4_1:41992919-41992938 Msa0548230:intron 20.0%
!! AAACAATAGCTAAAATCAAA+TGG + chr4_1:41993356-41993375 Msa0548230:intron 20.0%
!!! TGTTTTACAACATCAATAAT+AGG + chr4_1:41993501-41993520 Msa0548230:intron 20.0%
!!! CAATAATAGGTGAATAATTT+TGG + chr4_1:41993514-41993533 Msa0548230:intron 20.0%
!!! CAACTATAGAACATGTTTTT+TGG - chr4_1:41991146-41991165 None:intergenic 25.0%
! AATGTCTATGCTAAAAAATC+TGG + chr4_1:41991281-41991300 Msa0548230:CDS 25.0%
! AACTCTAATAATAACCCTTT+CGG + chr4_1:41991377-41991396 Msa0548230:CDS 25.0%
!! TTAATCACTGACATTTTCTT+TGG + chr4_1:41991813-41991832 Msa0548230:intron 25.0%
! ATTTCATCACTAAACTCAAA+AGG + chr4_1:41991891-41991910 Msa0548230:intron 25.0%
! TTTCATCACTAAACTCAAAA+GGG + chr4_1:41991892-41991911 Msa0548230:intron 25.0%
!! TAAGAGTATGTTTAAGGAAA+AGG - chr4_1:41991972-41991991 None:intergenic 25.0%
! TCAATTAATTACACTTCTAG+AGG + chr4_1:41991997-41992016 Msa0548230:intron 25.0%
! GAATGATAAAAGGATCAAAT+TGG + chr4_1:41992019-41992038 Msa0548230:intron 25.0%
! AAATATTAGGAAGTTAGCTA+GGG + chr4_1:41992143-41992162 Msa0548230:intron 25.0%
! TTATCTAACAGGTAATTTCA+TGG + chr4_1:41992248-41992267 Msa0548230:intron 25.0%
!! TTTTTCATTGGAGTTAATTG+GGG + chr4_1:41992341-41992360 Msa0548230:intron 25.0%
! AGTAAAGGAAGGTTAAAAAA+AGG - chr4_1:41992884-41992903 None:intergenic 25.0%
! ACAAATAAGAAAGTAAAGGA+AGG - chr4_1:41992895-41992914 None:intergenic 25.0%
! AGCAACAAATAAGAAAGTAA+AGG - chr4_1:41992899-41992918 None:intergenic 25.0%
! GAAAATGATGGTTGTTATAT+AGG + chr4_1:41992931-41992950 Msa0548230:intron 25.0%
! CTGAAAAAGTTTATAAACAG+TGG - chr4_1:41994485-41994504 None:intergenic 25.0%
! CTCAAATTTCACATTAAAAG+CGG - chr4_1:41994515-41994534 None:intergenic 25.0%
GGAATTATCTTGAATAGAAG+AGG - chr4_1:41991055-41991074 None:intergenic 30.0%
!! TAATCTAGTTTGGTGTTTGT+GGG - chr4_1:41991076-41991095 None:intergenic 30.0%
!! TTAATCTAGTTTGGTGTTTG+TGG - chr4_1:41991077-41991096 None:intergenic 30.0%
CAAACACCAAACTAGATTAA+CGG + chr4_1:41991077-41991096 Msa0548230:five_prime_UTR 30.0%
! GTAATGTTTATCTTTGGCTT+TGG - chr4_1:41991104-41991123 None:intergenic 30.0%
ATCTTAACTATAACCATCCA+TGG + chr4_1:41991193-41991212 Msa0548230:exon 30.0%
AAAGAATTGGATGAAAGAGT+GGG - chr4_1:41991221-41991240 None:intergenic 30.0%
TAAAGAATTGGATGAAAGAG+TGG - chr4_1:41991222-41991241 None:intergenic 30.0%
CTTAGGATGAGATAAAGAAT+TGG - chr4_1:41991234-41991253 None:intergenic 30.0%
!! CTCATCCTAAGTTGAATTTT+AGG + chr4_1:41991243-41991262 Msa0548230:CDS 30.0%
TGGTTCCTAAAATTCAACTT+AGG - chr4_1:41991251-41991270 None:intergenic 30.0%
!! TGAATTTTAGGAACCAAACA+AGG + chr4_1:41991255-41991274 Msa0548230:CDS 30.0%
TCATTTCCATCATTTGGATT+AGG + chr4_1:41991311-41991330 Msa0548230:CDS 30.0%
! TGGTCTTTTTCTTCATCTTT+TGG - chr4_1:41991341-41991360 None:intergenic 30.0%
GAAGAAAAAGACCAAACAAA+TGG + chr4_1:41991347-41991366 Msa0548230:CDS 30.0%
AGTTTGATGAACCATTTGTT+TGG - chr4_1:41991361-41991380 None:intergenic 30.0%
!! GTATGCAACATCGTTTTTAT+AGG - chr4_1:41991712-41991731 None:intergenic 30.0%
TGCATACAATCTAGTATCAA+TGG + chr4_1:41991725-41991744 Msa0548230:intron 30.0%
AATGACATAAACATCAACGT+CGG - chr4_1:41991866-41991885 None:intergenic 30.0%
! ACTTCTAGAGGAATGATAAA+AGG + chr4_1:41992009-41992028 Msa0548230:intron 30.0%
TCTTGATAAAAAAGTTCCCA+TGG + chr4_1:41992114-41992133 Msa0548230:intron 30.0%
CCTAATATTTCTTGTTCCAT+GGG - chr4_1:41992133-41992152 None:intergenic 30.0%
TCCTAATATTTCTTGTTCCA+TGG - chr4_1:41992134-41992153 None:intergenic 30.0%
GAAATATTAGGAAGTTAGCT+AGG + chr4_1:41992142-41992161 Msa0548230:intron 30.0%
AATATTAGGAAGTTAGCTAG+GGG + chr4_1:41992144-41992163 Msa0548230:intron 30.0%
! TTTGGAGCAAGAAATTACAT+GGG - chr4_1:41992178-41992197 None:intergenic 30.0%
CAACAATTAAAACATGACAC+TGG + chr4_1:41992293-41992312 Msa0548230:intron 30.0%
TCAGATTATATCAAACGAAG+AGG + chr4_1:41992383-41992402 Msa0548230:intron 30.0%
GAAGATATTGTTGAAGAAAG+AGG - chr4_1:41992658-41992677 None:intergenic 30.0%
AAGAACTCTTGAATAGACAA+AGG - chr4_1:41992693-41992712 None:intergenic 30.0%
!!! GGTCAAACATGTTTTGATTA+AGG - chr4_1:41992748-41992767 None:intergenic 30.0%
TCTTATAATGTGGTTGTCTT+AGG + chr4_1:41992789-41992808 Msa0548230:CDS 30.0%
TTATATAGGTAACAAAGTCC+AGG + chr4_1:41992945-41992964 Msa0548230:intron 30.0%
TTAGATTAATCCAATGACCA+AGG - chr4_1:41993123-41993142 None:intergenic 30.0%
! GAAGCTTTTTATTGACCAAT+AGG + chr4_1:41993390-41993409 Msa0548230:intron 30.0%
!!! TTTGGTTTTTCTTCTAGTTG+AGG + chr4_1:41993532-41993551 Msa0548230:intron 30.0%
! TTTTCTTTACAGCACTATTC+CGG + chr4_1:41993577-41993596 Msa0548230:intron 30.0%
TTTCTCCAATATTTCAGCAT+AGG - chr4_1:41993621-41993640 None:intergenic 30.0%
!!! ATCTTTCTTTTTTCCTCCTT+TGG - chr4_1:41994127-41994146 None:intergenic 30.0%
!! TCTATATTGATGATGACTAG+TGG + chr4_1:41994206-41994225 Msa0548230:CDS 30.0%
CTGTGTTAATGCTGATAATT+TGG + chr4_1:41994273-41994292 Msa0548230:three_prime_UTR 30.0%
GTTAATGCTGATAATTTGGT+TGG + chr4_1:41994277-41994296 Msa0548230:three_prime_UTR 30.0%
ATAATTTGGTTGGACATGTA+TGG + chr4_1:41994287-41994306 Msa0548230:three_prime_UTR 30.0%
! CAATATTTTCCCAACGAAAA+TGG + chr4_1:41994392-41994411 Msa0548230:three_prime_UTR 30.0%
! TTGCAAATTCCATTTTCGTT+GGG - chr4_1:41994404-41994423 None:intergenic 30.0%
! ATTGCAAATTCCATTTTCGT+TGG - chr4_1:41994405-41994424 None:intergenic 30.0%
CGATACGAAATCAATTTGTA+AGG + chr4_1:41994653-41994672 Msa0548230:three_prime_UTR 30.0%
TCCAATTAAAGATACCTCAA+GGG + chr4_1:41994722-41994741 Msa0548230:three_prime_UTR 30.0%
ATGGATAAACTCTGATTACG+TGG + chr4_1:41991001-41991020 Msa0548230:five_prime_UTR 35.0%
GTAAGCTAGATATAGCGAAT+TGG - chr4_1:41991033-41991052 None:intergenic 35.0%
TTTGGACCGTTAATCTAGTT+TGG - chr4_1:41991086-41991105 None:intergenic 35.0%
! AACAAAGAGTGTGAACTTGT+TGG + chr4_1:41991167-41991186 Msa0548230:five_prime_UTR 35.0%
CATAGACATTGAACCTTGTT+TGG - chr4_1:41991271-41991290 None:intergenic 35.0%
GTCTATGCTAAAAAATCTGG+AGG + chr4_1:41991284-41991303 Msa0548230:CDS 35.0%
TATGCTAAAAAATCTGGAGG+AGG + chr4_1:41991287-41991306 Msa0548230:CDS 35.0%
ATGCTAAAAAATCTGGAGGA+GGG + chr4_1:41991288-41991307 Msa0548230:CDS 35.0%
! GGTTTTCCTAATCCAAATGA+TGG - chr4_1:41991320-41991339 None:intergenic 35.0%
TCGTCTTGCTTCTCAATATA+AGG + chr4_1:41991631-41991650 Msa0548230:CDS 35.0%
!! TCAAATTGGCCTTTGTGTAA+TGG + chr4_1:41992033-41992052 Msa0548230:intron 35.0%
ATTCATCAGCTGCATTTGAT+AGG - chr4_1:41992062-41992081 None:intergenic 35.0%
CCCATGGAACAAGAAATATT+AGG + chr4_1:41992130-41992149 Msa0548230:intron 35.0%
ATATTAGGAAGTTAGCTAGG+GGG + chr4_1:41992145-41992164 Msa0548230:intron 35.0%
!! CTTTGGAGCAAGAAATTACA+TGG - chr4_1:41992179-41992198 None:intergenic 35.0%
CATGTAATTTCTTGCTCCAA+AGG + chr4_1:41992177-41992196 Msa0548230:intron 35.0%
!! ATTGCCTATTGCTTTTGCTA+TGG - chr4_1:41992454-41992473 None:intergenic 35.0%
ATCAAGTACATTGTAGGTTG+AGG - chr4_1:41992628-41992647 None:intergenic 35.0%
TCAACCTACAATGTACTTGA+TGG + chr4_1:41992627-41992646 Msa0548230:CDS 35.0%
AATAGACAAAGGTTGAGACT+TGG - chr4_1:41992682-41992701 None:intergenic 35.0%
ACCACATTATAAGAACTCTC+CGG - chr4_1:41992783-41992802 None:intergenic 35.0%
TACTTTATAGTCGTTCGAAC+CGG - chr4_1:41992826-41992845 None:intergenic 35.0%
! GGTATCTGTTTTACATTAGC+TGG + chr4_1:41993021-41993040 Msa0548230:intron 35.0%
ATATCTCGACCAAACAACTT+AGG + chr4_1:41993157-41993176 Msa0548230:intron 35.0%
GAAAGCCTATGCTGAAATAT+TGG + chr4_1:41993613-41993632 Msa0548230:CDS 35.0%
AACTAAGAAGATGGAAGAAG+AGG + chr4_1:41993700-41993719 Msa0548230:CDS 35.0%
AGCTAAAGAAGATCAAGAGA+AGG + chr4_1:41993763-41993782 Msa0548230:CDS 35.0%
! GGTAGAAGACATTTTGAACA+AGG + chr4_1:41993805-41993824 Msa0548230:CDS 35.0%
AACAAATCAAGATCCTGATG+AGG + chr4_1:41993883-41993902 Msa0548230:CDS 35.0%
! TGTTTAGTCACTGCTTTGTT+AGG - chr4_1:41994073-41994092 None:intergenic 35.0%
GGAGGAAAAAAGAAAGATAG+AGG + chr4_1:41994129-41994148 Msa0548230:CDS 35.0%
! AGATAGTCTCTTGTTTGAAC+AGG - chr4_1:41994189-41994208 None:intergenic 35.0%
!!! TGGACATGTATGGTTTTGTA+AGG + chr4_1:41994297-41994316 Msa0548230:three_prime_UTR 35.0%
AACCATGTAATCAGATTAGC+AGG + chr4_1:41994363-41994382 Msa0548230:three_prime_UTR 35.0%
ACCATGTAATCAGATTAGCA+GGG + chr4_1:41994364-41994383 Msa0548230:three_prime_UTR 35.0%
AACTCCTCAAAGTATGCAAT+TGG + chr4_1:41994429-41994448 Msa0548230:three_prime_UTR 35.0%
ACTCCTCAAAGTATGCAATT+GGG + chr4_1:41994430-41994449 Msa0548230:three_prime_UTR 35.0%
TTTAATTGGAGGAGAACAGA+GGG - chr4_1:41994712-41994731 None:intergenic 35.0%
! CTTGAGGTATCTTTAATTGG+AGG - chr4_1:41994723-41994742 None:intergenic 35.0%
CTCCAATTAAAGATACCTCA+AGG + chr4_1:41994721-41994740 Msa0548230:three_prime_UTR 35.0%
! TCCCTTGAGGTATCTTTAAT+TGG - chr4_1:41994726-41994745 None:intergenic 35.0%
TTCCAAAGTCGAATCCGAAA+GGG - chr4_1:41991394-41991413 None:intergenic 40.0%
TTTCCAAAGTCGAATCCGAA+AGG - chr4_1:41991395-41991414 None:intergenic 40.0%
TGACTTCTTTGATCCCTGTT+GGG + chr4_1:41991426-41991445 Msa0548230:CDS 40.0%
!! AACCATTTTTGCTCCCAACA+GGG - chr4_1:41991442-41991461 None:intergenic 40.0%
AGCAAAAATGGTTCTTTGCC+AGG + chr4_1:41991449-41991468 Msa0548230:CDS 40.0%
TCTTTGCCAGGTTTGTCATT+TGG + chr4_1:41991461-41991480 Msa0548230:CDS 40.0%
! TGTCATTTGGAAGTCCTACA+AGG + chr4_1:41991474-41991493 Msa0548230:CDS 40.0%
TAAGCAAAGTCTGTGCAATG+CGG - chr4_1:41991553-41991572 None:intergenic 40.0%
CATTGCACAGACTTTGCTTA+GGG + chr4_1:41991553-41991572 Msa0548230:CDS 40.0%
ACTTGATTCTGCTCAGGAAT+TGG + chr4_1:41991607-41991626 Msa0548230:CDS 40.0%
AGCTAGAGAGCAATACAAGA+AGG - chr4_1:41991931-41991950 None:intergenic 40.0%
GATAGGCTTCCATTACACAA+AGG - chr4_1:41992045-41992064 None:intergenic 40.0%
AAAACATGACACTGGACTGT+TGG + chr4_1:41992301-41992320 Msa0548230:intron 40.0%
GACTCCATAGCAAAAGCAAT+AGG + chr4_1:41992447-41992466 Msa0548230:CDS 40.0%
AATAGGCAATGCAACCAAAG+TGG + chr4_1:41992464-41992483 Msa0548230:CDS 40.0%
AGATGCCTTGCAAGTAATTC+AGG + chr4_1:41992539-41992558 Msa0548230:CDS 40.0%
GTCCTCTACGATGAAAACAA+CGG + chr4_1:41992594-41992613 Msa0548230:CDS 40.0%
GATGCCATCAAGTACATTGT+AGG - chr4_1:41992634-41992653 None:intergenic 40.0%
TCAAGAGTTCTTGCAGAAAG+TGG + chr4_1:41992701-41992720 Msa0548230:CDS 40.0%
GTCTAGTAAGTCGATTAGCA+TGG + chr4_1:41993066-41993085 Msa0548230:intron 40.0%
AACTCTGCACCTAAGTTGTT+TGG - chr4_1:41993169-41993188 None:intergenic 40.0%
AGTACACTTGCACAACCTAT+TGG - chr4_1:41993408-41993427 None:intergenic 40.0%
ATAGGTTGTGCAAGTGTACT+CGG + chr4_1:41993408-41993427 Msa0548230:intron 40.0%
!! GGTTTTTCTTCTAGTTGAGG+AGG + chr4_1:41993535-41993554 Msa0548230:intron 40.0%
TGCTGCAACAACTAAGAAGA+TGG + chr4_1:41993691-41993710 Msa0548230:CDS 40.0%
! GCTTTCAAAACAAGAAGCAC+AGG + chr4_1:41993730-41993749 Msa0548230:CDS 40.0%
AAGGCAAAAGTTAAGCTCAC+AGG + chr4_1:41993853-41993872 Msa0548230:CDS 40.0%
! TTTGGTTTCTCATCCTCATC+AGG - chr4_1:41993899-41993918 None:intergenic 40.0%
TGAGAAACCAAAGTTGCAAC+CGG + chr4_1:41993907-41993926 Msa0548230:CDS 40.0%
AAGCAGTGTGAGTAAACCAA+AGG + chr4_1:41994108-41994127 Msa0548230:CDS 40.0%
AAAGATAGAGGAGAAACCGA+AGG + chr4_1:41994141-41994160 Msa0548230:CDS 40.0%
AATACCTTCCTAACCTCCTT+CGG - chr4_1:41994160-41994179 None:intergenic 40.0%
!! AAGGAGGTTAGGAAGGTATT+TGG + chr4_1:41994160-41994179 Msa0548230:CDS 40.0%
!! TTGATGATGACTAGTGGAAG+TGG + chr4_1:41994212-41994231 Msa0548230:exon 40.0%
TCCCTGCTAATCTGATTACA+TGG - chr4_1:41994368-41994387 None:intergenic 40.0%
!! GTGGGTGATAATTTGTTGCA+TGG + chr4_1:41994576-41994595 Msa0548230:three_prime_UTR 40.0%
AACAGAGGGAGTAGAAATGA+GGG - chr4_1:41994698-41994717 None:intergenic 40.0%
CTTTAATTGGAGGAGAACAG+AGG - chr4_1:41994713-41994732 None:intergenic 40.0%
GGAGGGTCATTTCCATCATT+TGG + chr4_1:41991305-41991324 Msa0548230:CDS 45.0%
AACCCTTTCGGATTCGACTT+TGG + chr4_1:41991389-41991408 Msa0548230:CDS 45.0%
GGGATCAAAGAAGTCACATC+AGG - chr4_1:41991422-41991441 None:intergenic 45.0%
GTGACTTCTTTGATCCCTGT+TGG + chr4_1:41991425-41991444 Msa0548230:CDS 45.0%
ATCCCTGTTGGGAGCAAAAA+TGG + chr4_1:41991437-41991456 Msa0548230:CDS 45.0%
!! GAACCATTTTTGCTCCCAAC+AGG - chr4_1:41991443-41991462 None:intergenic 45.0%
GGACTTCCAAATGACAAACC+TGG - chr4_1:41991470-41991489 None:intergenic 45.0%
TGGAAGTCCTACAAGGAAGA+AGG + chr4_1:41991481-41991500 Msa0548230:CDS 45.0%
GAAGGATCCTTCTTCCTTGT+AGG - chr4_1:41991491-41991510 None:intergenic 45.0%
AAGGAAGAAGGATCCTTCGA+CGG + chr4_1:41991493-41991512 Msa0548230:CDS 45.0%
!! GTATTTGTTGCTGGTGCTAC+TGG + chr4_1:41991515-41991534 Msa0548230:CDS 45.0%
GCATTGCACAGACTTTGCTT+AGG + chr4_1:41991552-41991571 Msa0548230:CDS 45.0%
CACAGACTTTGCTTAGGGAA+GGG + chr4_1:41991558-41991577 Msa0548230:CDS 45.0%
GAAGGGTTTAGTGTTAGAGC+TGG + chr4_1:41991575-41991594 Msa0548230:CDS 45.0%
TCCTGAACTTGATTCTGCTC+AGG + chr4_1:41991601-41991620 Msa0548230:CDS 45.0%
TCCTGAGCAGAATCAAGTTC+AGG - chr4_1:41991605-41991624 None:intergenic 45.0%
CTAGTATCAATGGCGTGTGT+CGG + chr4_1:41991735-41991754 Msa0548230:intron 45.0%
TAGTATCAATGGCGTGTGTC+GGG + chr4_1:41991736-41991755 Msa0548230:intron 45.0%
ACCAAAGTGGTTGTCACCAT+TGG + chr4_1:41992477-41992496 Msa0548230:CDS 45.0%
ACCAATGGTGACAACCACTT+TGG - chr4_1:41992481-41992500 None:intergenic 45.0%
! ACCATTGGTCTCACAGAGAA+CGG + chr4_1:41992492-41992511 Msa0548230:CDS 45.0%
AGCAGCCTGAATTACTTGCA+AGG - chr4_1:41992547-41992566 None:intergenic 45.0%
! TTTGACCGATGATTTTGCGC+CGG + chr4_1:41992761-41992780 Msa0548230:CDS 45.0%
GCCGGAGAGTTCTTATAATG+TGG + chr4_1:41992779-41992798 Msa0548230:CDS 45.0%
GTCTTAGGCGAAGAAAACAC+CGG + chr4_1:41992804-41992823 Msa0548230:CDS 45.0%
AAAGTCCAGGATAGCATCGT+TGG + chr4_1:41992958-41992977 Msa0548230:CDS 45.0%
TGATGTCTTCTCCAACACAC+AGG + chr4_1:41992985-41993004 Msa0548230:CDS 45.0%
! GTTTTCTGCAACCTGTGTGT+TGG - chr4_1:41992999-41993018 None:intergenic 45.0%
CACACAGGTTGCAGAAAACA+AGG + chr4_1:41993000-41993019 Msa0548230:CDS 45.0%
TTCAACTGCACCTTGGTCAT+TGG + chr4_1:41993110-41993129 Msa0548230:intron 45.0%
AAGTTCGTCTACACGCTTCA+GGG - chr4_1:41993446-41993465 None:intergenic 45.0%
AAAGTTCGTCTACACGCTTC+AGG - chr4_1:41993447-41993466 None:intergenic 45.0%
! AGCGTGTAGACGAACTTTTC+AGG + chr4_1:41993449-41993468 Msa0548230:CDS 45.0%
TACAGCACTATTCCGGAAGA+CGG + chr4_1:41993584-41993603 Msa0548230:intron 45.0%
ATTGGAGAAAGCCAAAGCAG+AGG + chr4_1:41993631-41993650 Msa0548230:CDS 45.0%
GGCAAGAGTGAAAGCTGAAA+AGG + chr4_1:41993658-41993677 Msa0548230:CDS 45.0%
AGAAGATCAAGAGAAGGCAG+AGG + chr4_1:41993769-41993788 Msa0548230:CDS 45.0%
! AAGGCTAAAGCTTTTCGTGC+AGG + chr4_1:41993824-41993843 Msa0548230:CDS 45.0%
! AGGCTAAAGCTTTTCGTGCA+GGG + chr4_1:41993825-41993844 Msa0548230:CDS 45.0%
! CTTTTCGTGCAGGGTTTTCA+AGG + chr4_1:41993834-41993853 Msa0548230:CDS 45.0%
! TTGCAACCGGCAAAAGGTTT+TGG + chr4_1:41993920-41993939 Msa0548230:CDS 45.0%
!! GTTTTGGTGCAGGGTTTTCA+TGG + chr4_1:41993936-41993955 Msa0548230:CDS 45.0%
ATGGCAAAAGTTCAGCTCAC+AGG + chr4_1:41993955-41993974 Msa0548230:CDS 45.0%
AGCAATCCAAAAGCCTGATG+AGG + chr4_1:41993985-41994004 Msa0548230:CDS 45.0%
! TCTCATCCTCATCAGGCTTT+TGG - chr4_1:41993994-41994013 None:intergenic 45.0%
! TTTGGGTTCTCATCCTCATC+AGG - chr4_1:41994001-41994020 None:intergenic 45.0%
TGATGAGGATGAGAACCCAA+AGG + chr4_1:41994000-41994019 Msa0548230:CDS 45.0%
GGTTTACTCACACTGCTTCT+TGG - chr4_1:41994106-41994125 None:intergenic 45.0%
CAGTGTGAGTAAACCAAAGG+AGG + chr4_1:41994111-41994130 Msa0548230:CDS 45.0%
!! GAGGTTAGGAAGGTATTTGG+TGG + chr4_1:41994163-41994182 Msa0548230:CDS 45.0%
CCACCCAATTGCATACTTTG+AGG - chr4_1:41994436-41994455 None:intergenic 45.0%
CCTCAAAGTATGCAATTGGG+TGG + chr4_1:41994433-41994452 Msa0548230:three_prime_UTR 45.0%
AAAGTATGCAATTGGGTGGC+AGG + chr4_1:41994437-41994456 Msa0548230:three_prime_UTR 45.0%
GTATTTCGAATGCACCCTTG+AGG + chr4_1:41994534-41994553 Msa0548230:three_prime_UTR 45.0%
GAACAGAGGGAGTAGAAATG+AGG - chr4_1:41994699-41994718 None:intergenic 45.0%
TGAGACAATCATGTCCCTTG+AGG - chr4_1:41994739-41994758 None:intergenic 45.0%
!!! AACTTTTTTATAAAATATAT+AGG - chr4_1:41993288-41993307 None:intergenic 5.0%
GAAAGAGTGGGAACCATGGA+TGG - chr4_1:41991209-41991228 None:intergenic 50.0%
GGATGAAAGAGTGGGAACCA+TGG - chr4_1:41991213-41991232 None:intergenic 50.0%
CCAGCAACAAATACCGTCGA+AGG - chr4_1:41991509-41991528 None:intergenic 50.0%
! CCTTCGACGGTATTTGTTGC+TGG + chr4_1:41991506-41991525 Msa0548230:CDS 50.0%
GCACAGACTTTGCTTAGGGA+AGG + chr4_1:41991557-41991576 Msa0548230:CDS 50.0%
TAGGAAGTTAGCTAGGGGGA+AGG + chr4_1:41992149-41992168 Msa0548230:intron 50.0%
AGGAAGTTAGCTAGGGGGAA+GGG + chr4_1:41992150-41992169 Msa0548230:intron 50.0%
ACCGTTCTCTGTGAGACCAA+TGG - chr4_1:41992496-41992515 None:intergenic 50.0%
! TACTTGCAAGGCATCTGACG+TGG - chr4_1:41992535-41992554 None:intergenic 50.0%
!! CGCCGTTGTTTTCATCGTAG+AGG - chr4_1:41992599-41992618 None:intergenic 50.0%
ACTCTCCGGCGCAAAATCAT+CGG - chr4_1:41992769-41992788 None:intergenic 50.0%
CCAAGGTGCAGTTGAAGAGA+TGG - chr4_1:41993106-41993125 None:intergenic 50.0%
CCATCTCTTCAACTGCACCT+TGG + chr4_1:41993103-41993122 Msa0548230:intron 50.0%
AGTTCGTCTACACGCTTCAG+GGG - chr4_1:41993445-41993464 None:intergenic 50.0%
CTATTCCGGAAGACGGAAGA+AGG + chr4_1:41993591-41993610 Msa0548230:CDS 50.0%
GCTTTCCTTCTTCCGTCTTC+CGG - chr4_1:41993599-41993618 None:intergenic 50.0%
GAAAGCCAAAGCAGAGGAAG+AGG + chr4_1:41993637-41993656 Msa0548230:CDS 50.0%
TCTTGCCTCTTCCTCTGCTT+TGG - chr4_1:41993645-41993664 None:intergenic 50.0%
!! CCTTTTGCCGGTTGCAACTT+TGG - chr4_1:41993917-41993936 None:intergenic 50.0%
CCAAAGTTGCAACCGGCAAA+AGG + chr4_1:41993914-41993933 Msa0548230:CDS 50.0%
! CCTGCACCAAAACCTTTTGC+CGG - chr4_1:41993929-41993948 None:intergenic 50.0%
!! CGGCAAAAGGTTTTGGTGCA+GGG + chr4_1:41993927-41993946 Msa0548230:CDS 50.0%
GATAGAGGAGAAACCGAAGG+AGG + chr4_1:41994144-41994163 Msa0548230:CDS 50.0%
AGGAGAAACCGAAGGAGGTT+AGG + chr4_1:41994149-41994168 Msa0548230:CDS 50.0%
GAAACCGAAGGAGGTTAGGA+AGG + chr4_1:41994153-41994172 Msa0548230:CDS 50.0%
!! CAAGCACTAGTGGACTTGGT+GGG + chr4_1:41994558-41994577 Msa0548230:three_prime_UTR 50.0%
GAGGGAGTAGAAATGAGGGA+AGG - chr4_1:41994694-41994713 None:intergenic 50.0%
AGAGAACGGTCCAGCAACTG+AGG + chr4_1:41992506-41992525 Msa0548230:CDS 55.0%
ATTCAGGCTGCTCAGCTAGC+AGG + chr4_1:41992555-41992574 Msa0548230:CDS 55.0%
CATCGTAGAGGACTGCAACG+TGG - chr4_1:41992587-41992606 None:intergenic 55.0%
GTCCAGGATAGCATCGTTGG+TGG + chr4_1:41992961-41992980 Msa0548230:CDS 55.0%
AGCCACCAACGATGCTATCC+TGG - chr4_1:41992966-41992985 None:intergenic 55.0%
!! CACGCTTCAGGGGAGCATTT+GGG - chr4_1:41993435-41993454 None:intergenic 55.0%
!! ACACGCTTCAGGGGAGCATT+TGG - chr4_1:41993436-41993455 None:intergenic 55.0%
CAAGAGAAGGCAGAGGCAAC+TGG + chr4_1:41993776-41993795 Msa0548230:CDS 55.0%
GGCAGAGGCAACTGGAACTT+CGG + chr4_1:41993784-41993803 Msa0548230:CDS 55.0%
!! CCGGCAAAAGGTTTTGGTGC+AGG + chr4_1:41993926-41993945 Msa0548230:CDS 55.0%
CGGTGGCAACTTGCACCTTT+GGG - chr4_1:41994018-41994037 None:intergenic 55.0%
ACGGTGGCAACTTGCACCTT+TGG - chr4_1:41994019-41994038 None:intergenic 55.0%
GTGCAAGTTGCCACCGTAAG+AGG + chr4_1:41994022-41994041 Msa0548230:CDS 55.0%
AGTTGCCACCGTAAGAGGAC+AGG + chr4_1:41994027-41994046 Msa0548230:CDS 55.0%
AGCCTTCGCCTGTCCTCTTA+CGG - chr4_1:41994038-41994057 None:intergenic 55.0%
TAAGAGGACAGGCGAAGGCT+CGG + chr4_1:41994038-41994057 Msa0548230:CDS 55.0%
CCACTAGTGCTTGGCCTCAA+GGG - chr4_1:41994551-41994570 None:intergenic 55.0%
TCCACTAGTGCTTGGCCTCA+AGG - chr4_1:41994552-41994571 None:intergenic 55.0%
!! AGGCCAAGCACTAGTGGACT+TGG + chr4_1:41994554-41994573 Msa0548230:three_prime_UTR 55.0%
CCACCAAGTCCACTAGTGCT+TGG - chr4_1:41994560-41994579 None:intergenic 55.0%
!! CCAAGCACTAGTGGACTTGG+TGG + chr4_1:41994557-41994576 Msa0548230:three_prime_UTR 55.0%
!! GCTGGTGCTACTGGTCAAGC+TGG + chr4_1:41991524-41991543 Msa0548230:CDS 60.0%
GACGTGGAGACCTCAGTTGC+TGG - chr4_1:41992519-41992538 None:intergenic 60.0%
CTTCGCCTGTCCTCTTACGG+TGG - chr4_1:41994035-41994054 None:intergenic 60.0%
CACCGTAAGAGGACAGGCGA+AGG + chr4_1:41994033-41994052 Msa0548230:CDS 60.0%
TGCAATTGGGTGGCAGGCGA+CGG + chr4_1:41994443-41994462 Msa0548230:three_prime_UTR 60.0%
CCCTTGAGGCCAAGCACTAG+TGG + chr4_1:41994548-41994567 Msa0548230:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41990992 41994774 41990992 ID=Msa0548230;Name=Msa0548230
chr4_1 mRNA 41990992 41994774 41990992 ID=Msa0548230-mRNA-1;Parent=Msa0548230;Name=Msa0548230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=220|1|1|1|1|1|5|549|553
chr4_1 exon 41990992 41991652 41990992 ID=Msa0548230-mRNA-1:exon:10844;Parent=Msa0548230-mRNA-1
chr4_1 exon 41992387 41992842 41992387 ID=Msa0548230-mRNA-1:exon:10845;Parent=Msa0548230-mRNA-1
chr4_1 exon 41992953 41993021 41992953 ID=Msa0548230-mRNA-1:exon:10846;Parent=Msa0548230-mRNA-1
chr4_1 exon 41993412 41993470 41993412 ID=Msa0548230-mRNA-1:exon:10847;Parent=Msa0548230-mRNA-1
chr4_1 exon 41993589 41994774 41993589 ID=Msa0548230-mRNA-1:exon:10848;Parent=Msa0548230-mRNA-1
chr4_1 five_prime_UTR 41990992 41991211 41990992 ID=Msa0548230-mRNA-1:five_prime_utr;Parent=Msa0548230-mRNA-1
chr4_1 CDS 41991212 41991652 41991212 ID=Msa0548230-mRNA-1:cds;Parent=Msa0548230-mRNA-1
chr4_1 CDS 41992387 41992842 41992387 ID=Msa0548230-mRNA-1:cds;Parent=Msa0548230-mRNA-1
chr4_1 CDS 41992953 41993021 41992953 ID=Msa0548230-mRNA-1:cds;Parent=Msa0548230-mRNA-1
chr4_1 CDS 41993412 41993470 41993412 ID=Msa0548230-mRNA-1:cds;Parent=Msa0548230-mRNA-1
chr4_1 CDS 41993589 41994225 41993589 ID=Msa0548230-mRNA-1:cds;Parent=Msa0548230-mRNA-1
chr4_1 three_prime_UTR 41994226 41994774 41994226 ID=Msa0548230-mRNA-1:three_prime_utr;Parent=Msa0548230-mRNA-1
Gene Sequence

>Msa0548230

ATGGTTCCCACTCTTTCATCCAATTCTTTATCTCATCCTAAGTTGAATTTTAGGAACCAAACAAGGTTCAATGTCTATGCTAAAAAATCTGGAGGAGGGTCATTTCCATCATTTGGATTAGGAAAACCAAAAGATGAAGAAAAAGACCAAACAAATGGTTCATCAAACTCTAATAATAACCCTTTCGGATTCGACTTTGGAAAATTACCTGATGTGACTTCTTTGATCCCTGTTGGGAGCAAAAATGGTTCTTTGCCAGGTTTGTCATTTGGAAGTCCTACAAGGAAGAAGGATCCTTCGACGGTATTTGTTGCTGGTGCTACTGGTCAAGCTGGTATCCGCATTGCACAGACTTTGCTTAGGGAAGGGTTTAGTGTTAGAGCTGGTGTTCCTGAACTTGATTCTGCTCAGGAATTGGCTCGTCTTGCTTCTCAATATAAGATTATATCAAACGAAGAGGCAAAGCGTCTCAATGCTGTGCAGTCAAGCTTTGATGATGCAGACTCCATAGCAAAAGCAATAGGCAATGCAACCAAAGTGGTTGTCACCATTGGTCTCACAGAGAACGGTCCAGCAACTGAGGTCTCCACGTCAGATGCCTTGCAAGTAATTCAGGCTGCTCAGCTAGCAGGCGTAGACCACGTTGCAGTCCTCTACGATGAAAACAACGGCGTCAGCACCTCAACCTACAATGTACTTGATGGCATCTCCTCTTTCTTCAACAATATCTTCTCCAAGTCTCAACCTTTGTCTATTCAAGAGTTCTTGCAGAAAGTGGTTGAAACAGATGTCAAATATACCTTAATCAAAACATGTTTGACCGATGATTTTGCGCCGGAGAGTTCTTATAATGTGGTTGTCTTAGGCGAAGAAAACACCGGTTCGAACGACTATAAAGTAACAAAGTCCAGGATAGCATCGTTGGTGGCTGATGTCTTCTCCAACACACAGGTTGCAGAAAACAAGGTTGTGCAAGTGTACTCGGACCCAAATGCTCCCCTGAAGCGTGTAGACGAACTTTTCAGCACTATTCCGGAAGACGGAAGAAGGAAAGCCTATGCTGAAATATTGGAGAAAGCCAAAGCAGAGGAAGAGGCAAGAGTGAAAGCTGAAAAGGCACGCGAAACTGCTGCAACAACTAAGAAGATGGAAGAAGAGGCACTGAAGCTTTCAAAACAAGAAGCACAGGCTTCTAATCTAGCTAAAGAAGATCAAGAGAAGGCAGAGGCAACTGGAACTTCGGTAGAAGACATTTTGAACAAGGCTAAAGCTTTTCGTGCAGGGTTTTCAAGGCAAAAGTTAAGCTCACAGGTTGCTACAACAAATCAAGATCCTGATGAGGATGAGAAACCAAAGTTGCAACCGGCAAAAGGTTTTGGTGCAGGGTTTTCATGGCAAAAGTTCAGCTCACAGGTTGCTACAGCAATCCAAAAGCCTGATGAGGATGAGAACCCAAAGGTGCAAGTTGCCACCGTAAGAGGACAGGCGAAGGCTCGGAGTCTCATTCCTAACAAAGCAGTGACTAAACAAACAACAACTCCAAGAAGCAGTGTGAGTAAACCAAAGGAGGAAAAAAGAAAGATAGAGGAGAAACCGAAGGAGGTTAGGAAGGTATTTGGTGGCCTGTTCAAACAAGAGACTATCTATATTGATGATGACTAG
Protein sequence

>Msa0548230

MVPTLSSNSLSHPKLNFRNQTRFNVYAKKSGGGSFPSFGLGKPKDEEKDQTNGSSNSNNNPFGFDFGKLPDVTSLIPVGSKNGSLPGLSFGSPTRKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELDSAQELARLASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNATKVVVTIGLTENGPATEVSTSDALQVIQAAQLAGVDHVAVLYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQVYSDPNAPLKRVDELFSTIPEDGRRKAYAEILEKAKAEEEARVKAEKARETAATTKKMEEEALKLSKQEAQASNLAKEDQEKAEATGTSVEDILNKAKAFRAGFSRQKLSSQVATTNQDPDEDEKPKLQPAKGFGAGFSWQKFSSQVATAIQKPDEDENPKVQVATVRGQAKARSLIPNKAVTKQTTTPRSSVSKPKEEKRKIEEKPKEVRKVFGGLFKQETIYIDDD*