AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001040 MtrunA17_Chr3g0094361 97.778 270 4 1 1 268 1 270 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001040 AT4G29070.1 54.478 268 111 6 1 267 1 258 6.87e-98 287
Msa0001040 AT4G29070.2 54.478 268 111 6 1 267 1 258 6.87e-98 287

Find 104 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGAATCTGGAGTAAATT+TGG 0.151133 1_1:-2483264 None:intergenic
TACAAGACAATGTGCATTAA+TGG 0.165763 1_1:+2483794 Msa0001040:CDS
AAGAATGAAAATTTAGTAAA+TGG 0.192895 1_1:+2484051 Msa0001040:exon
AGGCAATCTTGAAGATATTA+AGG 0.239033 1_1:-2484137 None:intergenic
CGTTGTTGGAAAAGATAATA+TGG 0.290049 1_1:+2483460 Msa0001040:CDS
TCACAGTTGTTTCCTAGATA+TGG 0.298208 1_1:+2483551 Msa0001040:CDS
CTCCTTTAGTACGCAAAATA+TGG 0.299910 1_1:-2483751 None:intergenic
ACAATGAACTTGGGGTTTCT+TGG 0.306848 1_1:+2483134 Msa0001040:exon
ATTCACAATTTGTAGCTCTT+AGG 0.313226 1_1:-2484080 None:intergenic
GATAGAGTTTGAAGGAGAAT+TGG 0.320944 1_1:-2482513 None:intergenic
TCTTTCCCACTTGACCAATT+AGG 0.322806 1_1:-2483587 None:intergenic
AGAATGAAAATTTAGTAAAT+GGG 0.334127 1_1:+2484052 Msa0001040:exon
GACATTACTGTGGACCTAAT+TGG 0.334471 1_1:+2483573 Msa0001040:CDS
ACTAAATGAGTCGCTGAATC+TGG 0.356726 1_1:-2483275 None:intergenic
GTTTCTTGGTGGCATACCTT+GGG 0.365840 1_1:+2483148 Msa0001040:CDS
TTTGAGGACTTGCTTTCAAA+TGG 0.373399 1_1:+2482629 Msa0001040:five_prime_UTR
GGACGATCATTGATCCAGTT+TGG 0.376412 1_1:+2483987 Msa0001040:CDS
GGTTTCTTGGTGGCATACCT+TGG 0.379275 1_1:+2483147 Msa0001040:CDS
TGGCTACCCCTTTGCGCTTT+AGG 0.380144 1_1:+2483480 Msa0001040:CDS
GATGGCTAAGCAATTTGAAA+TGG 0.388789 1_1:+2484009 Msa0001040:CDS
CTTTAGGCCTTATGTTTGTA+AGG 0.395654 1_1:+2483496 Msa0001040:CDS
AATTGCTTAGCCATCCAAAC+TGG 0.398532 1_1:-2484001 None:intergenic
GTTAATGATCCCAAGTTGTC+AGG 0.399483 1_1:+2483323 Msa0001040:CDS
TGTAAGGTTCCATGGCATAC+AGG 0.400157 1_1:+2483512 Msa0001040:CDS
CAAAATCGCGAAAACGTTGT+TGG 0.403825 1_1:+2483446 Msa0001040:CDS
AACTCTTTATTGATCGTAGT+TGG 0.408341 1_1:-2483410 None:intergenic
CTAAATGTATTGCTGAATCT+TGG 0.410023 1_1:-2483187 None:intergenic
CCACAGTAATGTCCATATCT+AGG 0.418492 1_1:-2483563 None:intergenic
GGGACAAGCGTCCAATTGAT+TGG 0.422404 1_1:+2483627 Msa0001040:CDS
CTCTGAGAAATATGTATTTG+AGG 0.424162 1_1:+2482613 Msa0001040:five_prime_UTR
TGCTGCTATTGCCATGATAT+AGG 0.424949 1_1:+2483659 Msa0001040:CDS
CCTTCCTTTCGTTATTTCCA+TGG 0.427510 1_1:+2483357 Msa0001040:CDS
GCTGAATCTGGAGTAAATTT+GGG 0.427880 1_1:-2483263 None:intergenic
GCAATTTGAAATGGAGGAGT+TGG 0.430368 1_1:+2484018 Msa0001040:CDS
CAAGCGTCCAATTGATTGGT+TGG 0.431275 1_1:+2483631 Msa0001040:CDS
CATAAGGCCTAAAGCGCAAA+GGG 0.438079 1_1:-2483487 None:intergenic
TTTCTCAGAGTTAAAACTAA+AGG 0.438129 1_1:-2482600 None:intergenic
CAAGTCAAACATGAATCATC+TGG 0.443608 1_1:+2483233 Msa0001040:CDS
CTTACGAGATTCGTTCTGTA+AGG 0.444009 1_1:-2483951 None:intergenic
CAAGGGCCACCCTGACAACT+TGG 0.449292 1_1:-2483333 None:intergenic
AATTGGTCAAGTGGGAAAGA+TGG 0.457230 1_1:+2483590 Msa0001040:CDS
ATTGGTCAAGTGGGAAAGAT+GGG 0.460984 1_1:+2483591 Msa0001040:CDS
CTTATGTTTGTAAGGTTCCA+TGG 0.465114 1_1:+2483504 Msa0001040:CDS
AATCAAATGATAGAGTTTGA+AGG 0.478477 1_1:-2482521 None:intergenic
TTGAGGACTTGCTTTCAAAT+GGG 0.483591 1_1:+2482630 Msa0001040:five_prime_UTR
TTTCCATGGACAAATAAAGA+TGG 0.485141 1_1:+2483371 Msa0001040:CDS
CAGTAATCCAACCAATCAAT+TGG 0.489028 1_1:-2483638 None:intergenic
TCTCCATCTTTATTTGTCCA+TGG 0.491763 1_1:-2483374 None:intergenic
TAACATAATATTTAGTGTTG+TGG 0.491903 1_1:+2483107 Msa0001040:five_prime_UTR
GGCAATCTTGAAGATATTAA+GGG 0.493765 1_1:-2484136 None:intergenic
TTGTGGTGGCACAATGAACT+TGG 0.497520 1_1:+2483124 Msa0001040:exon
ATGAACTTGGGGTTTCTTGG+TGG 0.498099 1_1:+2483137 Msa0001040:CDS
GCAAAATATGGCGATTCTCT+AGG 0.500333 1_1:-2483739 None:intergenic
CATGGAACCTTACAAACATA+AGG 0.504158 1_1:-2483503 None:intergenic
ACGGAAAGAGGGTCGATTTG+TGG 0.506575 1_1:-2482454 None:intergenic
CATAATATTTAGTGTTGTGG+TGG 0.511970 1_1:+2483110 Msa0001040:five_prime_UTR
GAGTATCGTATCCTATATCA+TGG 0.517155 1_1:-2483670 None:intergenic
GAATGAAAATTTAGTAAATG+GGG 0.519903 1_1:+2484053 Msa0001040:exon
GTAAGGTTCCATGGCATACA+GGG 0.522334 1_1:+2483513 Msa0001040:CDS
ATTCTCTAGGCACTCAAGAA+AGG 0.522803 1_1:-2483726 None:intergenic
TGTGGTGGCACAATGAACTT+GGG 0.524930 1_1:+2483125 Msa0001040:exon
ATGTGCAAATTTGCACATGA+TGG 0.527273 1_1:-2484384 None:intergenic
GATCATTGATCCAGTTTGGA+TGG 0.540863 1_1:+2483991 Msa0001040:CDS
TTTCGACCCGTGTGACGCAC+GGG 0.544446 1_1:+2484265 Msa0001040:three_prime_UTR
CTCGTAAGTCTACAACAGTC+AGG 0.550370 1_1:+2483966 Msa0001040:CDS
CTTTCGACCCGTGTGACGCA+CGG 0.551765 1_1:+2484264 Msa0001040:three_prime_UTR
ACTTGTGAATGTGATTCTTG+TGG 0.552138 1_1:-2482482 None:intergenic
CTTGTGGTGGAGACGGAAAG+AGG 0.554065 1_1:-2482466 None:intergenic
AATATCTTCAAGATTGCCTG+TGG 0.561169 1_1:+2484141 Msa0001040:three_prime_UTR
TTGGTCAAGTGGGAAAGATG+GGG 0.571014 1_1:+2483592 Msa0001040:CDS
GGCTAAGCAATTTGAAATGG+AGG 0.576092 1_1:+2484012 Msa0001040:CDS
TGTAAAGATGAGCAACGTGC+GGG 0.578466 1_1:-2483775 None:intergenic
GATAGGACCCGTGCGTCACA+CGG 0.581738 1_1:-2484272 None:intergenic
CGATCAATAAAGAGTTGAAG+AGG 0.584391 1_1:+2483417 Msa0001040:CDS
TGTGGACCTAATTGGTCAAG+TGG 0.591356 1_1:+2483581 Msa0001040:CDS
TGTGAATGTGATTCTTGTGG+TGG 0.594212 1_1:-2482479 None:intergenic
TGTGATTCTTGTGGTGGAGA+CGG 0.594696 1_1:-2482473 None:intergenic
AAGGGCCACCCTGACAACTT+GGG 0.599062 1_1:-2483332 None:intergenic
GCTCTAACCCCTGTATGCCA+TGG 0.599360 1_1:-2483521 None:intergenic
TTGTCCATGGAAATAACGAA+AGG 0.600344 1_1:-2483361 None:intergenic
TTACTCCGAGGTTTAACCCA+AGG 0.601608 1_1:-2483164 None:intergenic
AATGAAAATTTAGTAAATGG+GGG 0.602393 1_1:+2484054 Msa0001040:exon
ACATAAGGCCTAAAGCGCAA+AGG 0.604279 1_1:-2483488 None:intergenic
CAAGCTCATTATACACCCAC+AGG 0.605164 1_1:-2484157 None:intergenic
TGATCATTATAACAGTCGAT+AGG 0.606275 1_1:-2484289 None:intergenic
TTAATGATCCCAAGTTGTCA+GGG 0.607070 1_1:+2483324 Msa0001040:CDS
CCATGGAAATAACGAAAGGA+AGG 0.609777 1_1:-2483357 None:intergenic
ATATCTTCAAGATTGCCTGT+GGG 0.631959 1_1:+2484142 Msa0001040:three_prime_UTR
AAATAACGAAAGGAAGGACA+AGG 0.631990 1_1:-2483351 None:intergenic
CCTAGATATGGACATTACTG+TGG 0.633496 1_1:+2483563 Msa0001040:CDS
GCTGAATCTTGGTTACTCCG+AGG 0.640091 1_1:-2483176 None:intergenic
TTGTGGTGGAGACGGAAAGA+GGG 0.641991 1_1:-2482465 None:intergenic
GCATACCTTGGGTTAAACCT+CGG 0.642539 1_1:+2483159 Msa0001040:CDS
TGAAGATATTAAGGGTGACA+AGG 0.644485 1_1:-2484128 None:intergenic
TGGTCAAGTGGGAAAGATGG+GGG 0.645782 1_1:+2483593 Msa0001040:CDS
GTGGACCTAATTGGTCAAGT+GGG 0.651606 1_1:+2483582 Msa0001040:CDS
GTGGTGGCACAATGAACTTG+GGG 0.655593 1_1:+2483126 Msa0001040:exon
TTGTAAAGATGAGCAACGTG+CGG 0.657865 1_1:-2483776 None:intergenic
TAAGGTTCCATGGCATACAG+GGG 0.665512 1_1:+2483514 Msa0001040:CDS
ATAGGACCCGTGCGTCACAC+GGG 0.666473 1_1:-2484271 None:intergenic
GACTTGCGAAGTAAACGCAG+TGG 0.668908 1_1:-2483216 None:intergenic
ATGATCCCAAGTTGTCAGGG+TGG 0.699677 1_1:+2483327 Msa0001040:CDS
AATAACGAAAGGAAGGACAA+GGG 0.717040 1_1:-2483350 None:intergenic
ATAAGGCCTAAAGCGCAAAG+GGG 0.758660 1_1:-2483486 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATCATATTATATATA+TGG - chr1_1:2483065-2483084 None:intergenic 10.0%
!! AATCAATCATATTATATATA+TGG - chr1_1:2483065-2483084 None:intergenic 10.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr1_1:2483024-2483043 Msa0001040:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr1_1:2484049-2484068 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr1_1:2484051-2484070 Msa0001040:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr1_1:2484052-2484071 Msa0001040:exon 15.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr1_1:2483024-2483043 Msa0001040:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr1_1:2484049-2484068 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr1_1:2484051-2484070 Msa0001040:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr1_1:2484052-2484071 Msa0001040:exon 15.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr1_1:2482901-2482920 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr1_1:2482985-2483004 Msa0001040:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr1_1:2483023-2483042 Msa0001040:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr1_1:2483107-2483126 Msa0001040:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr1_1:2483905-2483924 Msa0001040:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr1_1:2484053-2484072 Msa0001040:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr1_1:2484054-2484073 Msa0001040:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr1_1:2484191-2484210 None:intergenic 20.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr1_1:2482901-2482920 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr1_1:2482985-2483004 Msa0001040:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr1_1:2483023-2483042 Msa0001040:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr1_1:2483107-2483126 Msa0001040:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr1_1:2483905-2483924 Msa0001040:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr1_1:2484053-2484072 Msa0001040:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr1_1:2484054-2484073 Msa0001040:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr1_1:2484191-2484210 None:intergenic 20.0%
! AATCAAATGATAGAGTTTGA+AGG - chr1_1:2482524-2482543 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr1_1:2482603-2482622 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr1_1:2482776-2482795 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr1_1:2482842-2482861 Msa0001040:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr1_1:2482919-2482938 Msa0001040:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr1_1:2482955-2482974 Msa0001040:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr1_1:2483001-2483020 Msa0001040:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr1_1:2483846-2483865 Msa0001040:intron 25.0%
! AATCAAATGATAGAGTTTGA+AGG - chr1_1:2482524-2482543 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr1_1:2482603-2482622 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr1_1:2482776-2482795 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr1_1:2482842-2482861 Msa0001040:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr1_1:2482919-2482938 Msa0001040:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr1_1:2482955-2482974 Msa0001040:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr1_1:2483001-2483020 Msa0001040:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr1_1:2483846-2483865 Msa0001040:intron 25.0%
! CTCTGAGAAATATGTATTTG+AGG + chr1_1:2482613-2482632 Msa0001040:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr1_1:2482736-2482755 Msa0001040:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr1_1:2482740-2482759 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr1_1:2483110-2483129 Msa0001040:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr1_1:2483190-2483209 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr1_1:2483371-2483390 Msa0001040:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr1_1:2483413-2483432 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr1_1:2483460-2483479 Msa0001040:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr1_1:2483794-2483813 Msa0001040:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr1_1:2483898-2483917 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr1_1:2483909-2483928 Msa0001040:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr1_1:2484083-2484102 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr1_1:2484105-2484124 Msa0001040:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr1_1:2484139-2484158 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr1_1:2484140-2484159 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr1_1:2484292-2484311 None:intergenic 30.0%
! CTCTGAGAAATATGTATTTG+AGG + chr1_1:2482613-2482632 Msa0001040:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr1_1:2482736-2482755 Msa0001040:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr1_1:2482740-2482759 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr1_1:2483110-2483129 Msa0001040:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr1_1:2483190-2483209 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr1_1:2483371-2483390 Msa0001040:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr1_1:2483413-2483432 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr1_1:2483460-2483479 Msa0001040:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr1_1:2483794-2483813 Msa0001040:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr1_1:2483898-2483917 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr1_1:2483909-2483928 Msa0001040:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr1_1:2484083-2484102 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr1_1:2484105-2484124 Msa0001040:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr1_1:2484139-2484158 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr1_1:2484140-2484159 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr1_1:2484292-2484311 None:intergenic 30.0%
ACTTGTGAATGTGATTCTTG+TGG - chr1_1:2482485-2482504 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr1_1:2482516-2482535 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr1_1:2482629-2482648 Msa0001040:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr1_1:2482630-2482649 Msa0001040:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr1_1:2482650-2482669 Msa0001040:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr1_1:2483083-2483102 Msa0001040:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr1_1:2483233-2483252 Msa0001040:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr1_1:2483266-2483285 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr1_1:2483324-2483343 Msa0001040:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr1_1:2483353-2483372 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr1_1:2483354-2483373 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr1_1:2483364-2483383 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr1_1:2483377-2483396 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr1_1:2483417-2483436 Msa0001040:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr1_1:2483496-2483515 Msa0001040:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr1_1:2483506-2483525 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr1_1:2483504-2483523 Msa0001040:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr1_1:2483551-2483570 Msa0001040:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr1_1:2483641-2483660 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr1_1:2483673-2483692 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr1_1:2483754-2483773 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr1_1:2484009-2484028 Msa0001040:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr1_1:2484131-2484150 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr1_1:2484141-2484160 Msa0001040:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr1_1:2484142-2484161 Msa0001040:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr1_1:2484387-2484406 None:intergenic 35.0%
ACTTGTGAATGTGATTCTTG+TGG - chr1_1:2482485-2482504 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr1_1:2482516-2482535 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr1_1:2482629-2482648 Msa0001040:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr1_1:2482630-2482649 Msa0001040:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr1_1:2482650-2482669 Msa0001040:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr1_1:2483083-2483102 Msa0001040:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr1_1:2483233-2483252 Msa0001040:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr1_1:2483266-2483285 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr1_1:2483324-2483343 Msa0001040:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr1_1:2483353-2483372 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr1_1:2483354-2483373 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr1_1:2483364-2483383 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr1_1:2483377-2483396 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr1_1:2483417-2483436 Msa0001040:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr1_1:2483496-2483515 Msa0001040:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr1_1:2483506-2483525 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr1_1:2483504-2483523 Msa0001040:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr1_1:2483551-2483570 Msa0001040:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr1_1:2483641-2483660 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr1_1:2483673-2483692 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr1_1:2483754-2483773 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr1_1:2484009-2484028 Msa0001040:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr1_1:2484131-2484150 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr1_1:2484141-2484160 Msa0001040:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr1_1:2484142-2484161 Msa0001040:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr1_1:2484387-2484406 None:intergenic 35.0%
TGTGAATGTGATTCTTGTGG+TGG - chr1_1:2482482-2482501 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr1_1:2482770-2482789 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr1_1:2483134-2483153 Msa0001040:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr1_1:2483267-2483286 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr1_1:2483278-2483297 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr1_1:2483323-2483342 Msa0001040:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr1_1:2483360-2483379 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr1_1:2483357-2483376 Msa0001040:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr1_1:2483446-2483465 Msa0001040:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr1_1:2483566-2483585 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr1_1:2483563-2483582 Msa0001040:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr1_1:2483573-2483592 Msa0001040:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr1_1:2483590-2483609 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr1_1:2483590-2483609 Msa0001040:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr1_1:2483591-2483610 Msa0001040:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr1_1:2483659-2483678 Msa0001040:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr1_1:2483729-2483748 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr1_1:2483742-2483761 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr1_1:2483749-2483768 Msa0001040:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr1_1:2483779-2483798 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr1_1:2483954-2483973 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr1_1:2483991-2484010 Msa0001040:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr1_1:2484004-2484023 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr1_1:2484012-2484031 Msa0001040:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr1_1:2484018-2484037 Msa0001040:CDS 40.0%
TGTGAATGTGATTCTTGTGG+TGG - chr1_1:2482482-2482501 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr1_1:2482770-2482789 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr1_1:2483134-2483153 Msa0001040:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr1_1:2483267-2483286 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr1_1:2483278-2483297 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr1_1:2483323-2483342 Msa0001040:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr1_1:2483360-2483379 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr1_1:2483357-2483376 Msa0001040:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr1_1:2483446-2483465 Msa0001040:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr1_1:2483566-2483585 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr1_1:2483563-2483582 Msa0001040:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr1_1:2483573-2483592 Msa0001040:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr1_1:2483590-2483609 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr1_1:2483590-2483609 Msa0001040:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr1_1:2483591-2483610 Msa0001040:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr1_1:2483659-2483678 Msa0001040:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr1_1:2483729-2483748 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr1_1:2483742-2483761 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr1_1:2483749-2483768 Msa0001040:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr1_1:2483779-2483798 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr1_1:2483954-2483973 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr1_1:2483991-2484010 Msa0001040:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr1_1:2484004-2484023 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr1_1:2484012-2484031 Msa0001040:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr1_1:2484018-2484037 Msa0001040:CDS 40.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr1_1:2482476-2482495 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr1_1:2482764-2482783 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr1_1:2483124-2483143 Msa0001040:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr1_1:2483125-2483144 Msa0001040:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr1_1:2483137-2483156 Msa0001040:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr1_1:2483148-2483167 Msa0001040:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr1_1:2483159-2483178 Msa0001040:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr1_1:2483167-2483186 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr1_1:2483489-2483508 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr1_1:2483490-2483509 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr1_1:2483491-2483510 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr1_1:2483512-2483531 Msa0001040:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr1_1:2483513-2483532 Msa0001040:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr1_1:2483514-2483533 Msa0001040:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr1_1:2483581-2483600 Msa0001040:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr1_1:2483582-2483601 Msa0001040:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr1_1:2483592-2483611 Msa0001040:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr1_1:2483606-2483625 Msa0001040:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr1_1:2483607-2483626 Msa0001040:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr1_1:2483631-2483650 Msa0001040:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr1_1:2483778-2483797 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr1_1:2483966-2483985 Msa0001040:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr1_1:2483987-2484006 Msa0001040:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr1_1:2484160-2484179 None:intergenic 45.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr1_1:2482476-2482495 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr1_1:2482764-2482783 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr1_1:2483124-2483143 Msa0001040:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr1_1:2483125-2483144 Msa0001040:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr1_1:2483137-2483156 Msa0001040:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr1_1:2483148-2483167 Msa0001040:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr1_1:2483159-2483178 Msa0001040:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr1_1:2483167-2483186 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr1_1:2483489-2483508 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr1_1:2483490-2483509 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr1_1:2483491-2483510 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr1_1:2483512-2483531 Msa0001040:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr1_1:2483513-2483532 Msa0001040:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr1_1:2483514-2483533 Msa0001040:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr1_1:2483581-2483600 Msa0001040:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr1_1:2483582-2483601 Msa0001040:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr1_1:2483592-2483611 Msa0001040:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr1_1:2483606-2483625 Msa0001040:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr1_1:2483607-2483626 Msa0001040:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr1_1:2483631-2483650 Msa0001040:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr1_1:2483778-2483797 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr1_1:2483966-2483985 Msa0001040:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr1_1:2483987-2484006 Msa0001040:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr1_1:2484160-2484179 None:intergenic 45.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr1_1:2482457-2482476 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr1_1:2482468-2482487 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr1_1:2483126-2483145 Msa0001040:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr1_1:2483147-2483166 Msa0001040:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr1_1:2483179-2483198 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr1_1:2483219-2483238 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr1_1:2483327-2483346 Msa0001040:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr1_1:2483593-2483612 Msa0001040:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr1_1:2483627-2483646 Msa0001040:CDS 50.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr1_1:2482457-2482476 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr1_1:2482468-2482487 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr1_1:2483126-2483145 Msa0001040:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr1_1:2483147-2483166 Msa0001040:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr1_1:2483179-2483198 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr1_1:2483219-2483238 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr1_1:2483327-2483346 Msa0001040:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr1_1:2483593-2483612 Msa0001040:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr1_1:2483627-2483646 Msa0001040:CDS 50.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr1_1:2482469-2482488 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr1_1:2482756-2482775 Msa0001040:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr1_1:2483335-2483354 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr1_1:2483480-2483499 Msa0001040:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr1_1:2483524-2483543 None:intergenic 55.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr1_1:2482469-2482488 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr1_1:2482756-2482775 Msa0001040:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr1_1:2483335-2483354 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr1_1:2483480-2483499 Msa0001040:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr1_1:2483524-2483543 None:intergenic 55.0%
CAAGGGCCACCCTGACAACT+TGG - chr1_1:2483336-2483355 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr1_1:2484264-2484283 Msa0001040:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr1_1:2484265-2484284 Msa0001040:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr1_1:2484274-2484293 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr1_1:2484275-2484294 None:intergenic 60.0%
CAAGGGCCACCCTGACAACT+TGG - chr1_1:2483336-2483355 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr1_1:2484264-2484283 Msa0001040:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr1_1:2484265-2484284 Msa0001040:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr1_1:2484274-2484293 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr1_1:2484275-2484294 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 2482452 2484446 2482452 ID=Msa0001040;Name=Msa0001040
chr1_1 mRNA 2482452 2484446 2482452 ID=Msa0001040-mRNA-1;Parent=Msa0001040;Name=Msa0001040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=232|1|1|1|0.5|0.66|3|388|268
chr1_1 exon 2482452 2482651 2482452 ID=Msa0001040-mRNA-1:exon:558;Parent=Msa0001040-mRNA-1
chr1_1 exon 2483105 2483815 2483105 ID=Msa0001040-mRNA-1:exon:559;Parent=Msa0001040-mRNA-1
chr1_1 exon 2483931 2484446 2483931 ID=Msa0001040-mRNA-1:exon:560;Parent=Msa0001040-mRNA-1
chr1_1 five_prime_UTR 2482452 2482651 2482452 ID=Msa0001040-mRNA-1:five_prime_utr;Parent=Msa0001040-mRNA-1
chr1_1 five_prime_UTR 2483105 2483136 2483105 ID=Msa0001040-mRNA-1:five_prime_utr;Parent=Msa0001040-mRNA-1
chr1_1 CDS 2483137 2483815 2483137 ID=Msa0001040-mRNA-1:cds;Parent=Msa0001040-mRNA-1
chr1_1 CDS 2483931 2484058 2483931 ID=Msa0001040-mRNA-1:cds;Parent=Msa0001040-mRNA-1
chr1_1 three_prime_UTR 2484059 2484446 2484059 ID=Msa0001040-mRNA-1:three_prime_utr;Parent=Msa0001040-mRNA-1
Gene Sequence

>Msa0001040

ATGAACTTGGGGTTTCTTGGTGGCATACCTTGGGTTAAACCTCGGAGTAACCAAGATTCAGCAATACATTTAGTTCAAACCACTGCGTTTACTTCGCAAGTCAAACATGAATCATCTGGTATTGATCCCAAATTTACTCCAGATTCAGCGACTCATTTAGTTCAAAAAGCACAACAAGAGTCATCTGTTAATGATCCCAAGTTGTCAGGGTGGCCCTTGTCCTTCCTTTCGTTATTTCCATGGACAAATAAAGATGGAGAAAAGTTTCAAAGACCAACTACGATCAATAAAGAGTTGAAGAGGCATGCACAAAATCGCGAAAACGTTGTTGGAAAAGATAATATGGCTACCCCTTTGCGCTTTAGGCCTTATGTTTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCACAGTTGTTTCCTAGATATGGACATTACTGTGGACCTAATTGGTCAAGTGGGAAAGATGGGGGATCTCTTGTTTGGGACAAGCGTCCAATTGATTGGTTGGATTACTGCTGCTATTGCCATGATATAGGATACGATACTCATGATCAAGCTAAACTGCTGAAAGCTGATTTAGCCTTTCTTGAGTGCCTAGAGAATCGCCATATTTTGCGTACTAAAGGAGACCCGCACGTTGCTCATCTTTACAAGACAATGTGCATTAATGGTCTTAAGAATTTTCTAATACCTTACAGAACGAATCTCGTAAGTCTACAACAGTCAGGACGATCATTGATCCAGTTTGGATGGCTAAGCAATTTGAAATGGAGGAGTTGGAACTACCAAAAAGAATGA

Protein sequence

>Msa0001040

MNLGFLGGIPWVKPRSNQDSAIHLVQTTAFTSQVKHESSGIDPKFTPDSATHLVQKAQQESSVNDPKLSGWPLSFLSLFPWTNKDGEKFQRPTTINKELKRHAQNRENVVGKDNMATPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDKRPIDWLDYCCYCHDIGYDTHDQAKLLKADLAFLECLENRHILRTKGDPHVAHLYKTMCINGLKNFLIPYRTNLVSLQQSGRSLIQFGWLSNLKWRSWNYQKE*