AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404440 MtrunA17_Chr3g0094361 97.778 270 4 1 1 268 1 270 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404440 AT4G29070.1 54.478 268 111 6 1 267 1 258 6.87e-98 287
Msa0404440 AT4G29070.2 54.478 268 111 6 1 267 1 258 6.87e-98 287

Find 104 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGAATCTGGAGTAAATT+TGG 0.151133 3_2:-35811910 None:intergenic
TACAAGACAATGTGCATTAA+TGG 0.165763 3_2:+35812440 Msa0404440:CDS
AAGAATGAAAATTTAGTAAA+TGG 0.192895 3_2:+35812697 Msa0404440:exon
AGGCAATCTTGAAGATATTA+AGG 0.239033 3_2:-35812783 None:intergenic
CGTTGTTGGAAAAGATAATA+TGG 0.290049 3_2:+35812106 Msa0404440:CDS
TCACAGTTGTTTCCTAGATA+TGG 0.298208 3_2:+35812197 Msa0404440:CDS
CTCCTTTAGTACGCAAAATA+TGG 0.299910 3_2:-35812397 None:intergenic
ACAATGAACTTGGGGTTTCT+TGG 0.306848 3_2:+35811780 Msa0404440:exon
ATTCACAATTTGTAGCTCTT+AGG 0.313226 3_2:-35812726 None:intergenic
GATAGAGTTTGAAGGAGAAT+TGG 0.320944 3_2:-35811159 None:intergenic
TCTTTCCCACTTGACCAATT+AGG 0.322806 3_2:-35812233 None:intergenic
AGAATGAAAATTTAGTAAAT+GGG 0.334127 3_2:+35812698 Msa0404440:exon
GACATTACTGTGGACCTAAT+TGG 0.334471 3_2:+35812219 Msa0404440:CDS
ACTAAATGAGTCGCTGAATC+TGG 0.356726 3_2:-35811921 None:intergenic
GTTTCTTGGTGGCATACCTT+GGG 0.365840 3_2:+35811794 Msa0404440:CDS
TTTGAGGACTTGCTTTCAAA+TGG 0.373399 3_2:+35811275 Msa0404440:five_prime_UTR
GGACGATCATTGATCCAGTT+TGG 0.376412 3_2:+35812633 Msa0404440:CDS
GGTTTCTTGGTGGCATACCT+TGG 0.379275 3_2:+35811793 Msa0404440:CDS
TGGCTACCCCTTTGCGCTTT+AGG 0.380144 3_2:+35812126 Msa0404440:CDS
GATGGCTAAGCAATTTGAAA+TGG 0.388789 3_2:+35812655 Msa0404440:CDS
CTTTAGGCCTTATGTTTGTA+AGG 0.395654 3_2:+35812142 Msa0404440:CDS
AATTGCTTAGCCATCCAAAC+TGG 0.398532 3_2:-35812647 None:intergenic
GTTAATGATCCCAAGTTGTC+AGG 0.399483 3_2:+35811969 Msa0404440:CDS
TGTAAGGTTCCATGGCATAC+AGG 0.400157 3_2:+35812158 Msa0404440:CDS
CAAAATCGCGAAAACGTTGT+TGG 0.403825 3_2:+35812092 Msa0404440:CDS
AACTCTTTATTGATCGTAGT+TGG 0.408341 3_2:-35812056 None:intergenic
CTAAATGTATTGCTGAATCT+TGG 0.410023 3_2:-35811833 None:intergenic
CCACAGTAATGTCCATATCT+AGG 0.418492 3_2:-35812209 None:intergenic
GGGACAAGCGTCCAATTGAT+TGG 0.422404 3_2:+35812273 Msa0404440:CDS
CTCTGAGAAATATGTATTTG+AGG 0.424162 3_2:+35811259 Msa0404440:five_prime_UTR
TGCTGCTATTGCCATGATAT+AGG 0.424949 3_2:+35812305 Msa0404440:CDS
CCTTCCTTTCGTTATTTCCA+TGG 0.427510 3_2:+35812003 Msa0404440:CDS
GCTGAATCTGGAGTAAATTT+GGG 0.427880 3_2:-35811909 None:intergenic
GCAATTTGAAATGGAGGAGT+TGG 0.430368 3_2:+35812664 Msa0404440:CDS
CAAGCGTCCAATTGATTGGT+TGG 0.431275 3_2:+35812277 Msa0404440:CDS
CATAAGGCCTAAAGCGCAAA+GGG 0.438079 3_2:-35812133 None:intergenic
TTTCTCAGAGTTAAAACTAA+AGG 0.438129 3_2:-35811246 None:intergenic
CAAGTCAAACATGAATCATC+TGG 0.443608 3_2:+35811879 Msa0404440:CDS
CTTACGAGATTCGTTCTGTA+AGG 0.444009 3_2:-35812597 None:intergenic
CAAGGGCCACCCTGACAACT+TGG 0.449292 3_2:-35811979 None:intergenic
AATTGGTCAAGTGGGAAAGA+TGG 0.457230 3_2:+35812236 Msa0404440:CDS
ATTGGTCAAGTGGGAAAGAT+GGG 0.460984 3_2:+35812237 Msa0404440:CDS
CTTATGTTTGTAAGGTTCCA+TGG 0.465114 3_2:+35812150 Msa0404440:CDS
AATCAAATGATAGAGTTTGA+AGG 0.478477 3_2:-35811167 None:intergenic
TTGAGGACTTGCTTTCAAAT+GGG 0.483591 3_2:+35811276 Msa0404440:five_prime_UTR
TTTCCATGGACAAATAAAGA+TGG 0.485141 3_2:+35812017 Msa0404440:CDS
CAGTAATCCAACCAATCAAT+TGG 0.489028 3_2:-35812284 None:intergenic
TCTCCATCTTTATTTGTCCA+TGG 0.491763 3_2:-35812020 None:intergenic
TAACATAATATTTAGTGTTG+TGG 0.491903 3_2:+35811753 Msa0404440:five_prime_UTR
GGCAATCTTGAAGATATTAA+GGG 0.493765 3_2:-35812782 None:intergenic
TTGTGGTGGCACAATGAACT+TGG 0.497520 3_2:+35811770 Msa0404440:exon
ATGAACTTGGGGTTTCTTGG+TGG 0.498099 3_2:+35811783 Msa0404440:CDS
GCAAAATATGGCGATTCTCT+AGG 0.500333 3_2:-35812385 None:intergenic
CATGGAACCTTACAAACATA+AGG 0.504158 3_2:-35812149 None:intergenic
ACGGAAAGAGGGTCGATTTG+TGG 0.506575 3_2:-35811100 None:intergenic
CATAATATTTAGTGTTGTGG+TGG 0.511970 3_2:+35811756 Msa0404440:five_prime_UTR
GAGTATCGTATCCTATATCA+TGG 0.517155 3_2:-35812316 None:intergenic
GAATGAAAATTTAGTAAATG+GGG 0.519903 3_2:+35812699 Msa0404440:exon
GTAAGGTTCCATGGCATACA+GGG 0.522334 3_2:+35812159 Msa0404440:CDS
ATTCTCTAGGCACTCAAGAA+AGG 0.522803 3_2:-35812372 None:intergenic
TGTGGTGGCACAATGAACTT+GGG 0.524930 3_2:+35811771 Msa0404440:exon
ATGTGCAAATTTGCACATGA+TGG 0.527273 3_2:-35813030 None:intergenic
GATCATTGATCCAGTTTGGA+TGG 0.540863 3_2:+35812637 Msa0404440:CDS
TTTCGACCCGTGTGACGCAC+GGG 0.544446 3_2:+35812911 Msa0404440:three_prime_UTR
CTCGTAAGTCTACAACAGTC+AGG 0.550370 3_2:+35812612 Msa0404440:CDS
CTTTCGACCCGTGTGACGCA+CGG 0.551765 3_2:+35812910 Msa0404440:three_prime_UTR
ACTTGTGAATGTGATTCTTG+TGG 0.552138 3_2:-35811128 None:intergenic
CTTGTGGTGGAGACGGAAAG+AGG 0.554065 3_2:-35811112 None:intergenic
AATATCTTCAAGATTGCCTG+TGG 0.561169 3_2:+35812787 Msa0404440:three_prime_UTR
TTGGTCAAGTGGGAAAGATG+GGG 0.571014 3_2:+35812238 Msa0404440:CDS
GGCTAAGCAATTTGAAATGG+AGG 0.576092 3_2:+35812658 Msa0404440:CDS
TGTAAAGATGAGCAACGTGC+GGG 0.578466 3_2:-35812421 None:intergenic
GATAGGACCCGTGCGTCACA+CGG 0.581738 3_2:-35812918 None:intergenic
CGATCAATAAAGAGTTGAAG+AGG 0.584391 3_2:+35812063 Msa0404440:CDS
TGTGGACCTAATTGGTCAAG+TGG 0.591356 3_2:+35812227 Msa0404440:CDS
TGTGAATGTGATTCTTGTGG+TGG 0.594212 3_2:-35811125 None:intergenic
TGTGATTCTTGTGGTGGAGA+CGG 0.594696 3_2:-35811119 None:intergenic
AAGGGCCACCCTGACAACTT+GGG 0.599062 3_2:-35811978 None:intergenic
GCTCTAACCCCTGTATGCCA+TGG 0.599360 3_2:-35812167 None:intergenic
TTGTCCATGGAAATAACGAA+AGG 0.600344 3_2:-35812007 None:intergenic
TTACTCCGAGGTTTAACCCA+AGG 0.601608 3_2:-35811810 None:intergenic
AATGAAAATTTAGTAAATGG+GGG 0.602393 3_2:+35812700 Msa0404440:exon
ACATAAGGCCTAAAGCGCAA+AGG 0.604279 3_2:-35812134 None:intergenic
CAAGCTCATTATACACCCAC+AGG 0.605164 3_2:-35812803 None:intergenic
TGATCATTATAACAGTCGAT+AGG 0.606275 3_2:-35812935 None:intergenic
TTAATGATCCCAAGTTGTCA+GGG 0.607070 3_2:+35811970 Msa0404440:CDS
CCATGGAAATAACGAAAGGA+AGG 0.609777 3_2:-35812003 None:intergenic
ATATCTTCAAGATTGCCTGT+GGG 0.631959 3_2:+35812788 Msa0404440:three_prime_UTR
AAATAACGAAAGGAAGGACA+AGG 0.631990 3_2:-35811997 None:intergenic
CCTAGATATGGACATTACTG+TGG 0.633496 3_2:+35812209 Msa0404440:CDS
GCTGAATCTTGGTTACTCCG+AGG 0.640091 3_2:-35811822 None:intergenic
TTGTGGTGGAGACGGAAAGA+GGG 0.641991 3_2:-35811111 None:intergenic
GCATACCTTGGGTTAAACCT+CGG 0.642539 3_2:+35811805 Msa0404440:CDS
TGAAGATATTAAGGGTGACA+AGG 0.644485 3_2:-35812774 None:intergenic
TGGTCAAGTGGGAAAGATGG+GGG 0.645782 3_2:+35812239 Msa0404440:CDS
GTGGACCTAATTGGTCAAGT+GGG 0.651606 3_2:+35812228 Msa0404440:CDS
GTGGTGGCACAATGAACTTG+GGG 0.655593 3_2:+35811772 Msa0404440:exon
TTGTAAAGATGAGCAACGTG+CGG 0.657865 3_2:-35812422 None:intergenic
TAAGGTTCCATGGCATACAG+GGG 0.665512 3_2:+35812160 Msa0404440:CDS
ATAGGACCCGTGCGTCACAC+GGG 0.666473 3_2:-35812917 None:intergenic
GACTTGCGAAGTAAACGCAG+TGG 0.668908 3_2:-35811862 None:intergenic
ATGATCCCAAGTTGTCAGGG+TGG 0.699677 3_2:+35811973 Msa0404440:CDS
AATAACGAAAGGAAGGACAA+GGG 0.717040 3_2:-35811996 None:intergenic
ATAAGGCCTAAAGCGCAAAG+GGG 0.758660 3_2:-35812132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATCATATTATATATA+TGG - chr3_2:35811711-35811730 None:intergenic 10.0%
!! AATCAATCATATTATATATA+TGG - chr3_2:35811711-35811730 None:intergenic 10.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr3_2:35811670-35811689 Msa0404440:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr3_2:35812695-35812714 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr3_2:35812697-35812716 Msa0404440:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr3_2:35812698-35812717 Msa0404440:exon 15.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr3_2:35811670-35811689 Msa0404440:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr3_2:35812695-35812714 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr3_2:35812697-35812716 Msa0404440:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr3_2:35812698-35812717 Msa0404440:exon 15.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr3_2:35811547-35811566 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr3_2:35811631-35811650 Msa0404440:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr3_2:35811669-35811688 Msa0404440:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr3_2:35811753-35811772 Msa0404440:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr3_2:35812551-35812570 Msa0404440:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr3_2:35812699-35812718 Msa0404440:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr3_2:35812700-35812719 Msa0404440:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr3_2:35812837-35812856 None:intergenic 20.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr3_2:35811547-35811566 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr3_2:35811631-35811650 Msa0404440:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr3_2:35811669-35811688 Msa0404440:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr3_2:35811753-35811772 Msa0404440:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr3_2:35812551-35812570 Msa0404440:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr3_2:35812699-35812718 Msa0404440:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr3_2:35812700-35812719 Msa0404440:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr3_2:35812837-35812856 None:intergenic 20.0%
! AATCAAATGATAGAGTTTGA+AGG - chr3_2:35811170-35811189 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr3_2:35811249-35811268 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr3_2:35811422-35811441 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr3_2:35811488-35811507 Msa0404440:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr3_2:35811565-35811584 Msa0404440:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr3_2:35811601-35811620 Msa0404440:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr3_2:35811647-35811666 Msa0404440:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr3_2:35812492-35812511 Msa0404440:intron 25.0%
! AATCAAATGATAGAGTTTGA+AGG - chr3_2:35811170-35811189 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr3_2:35811249-35811268 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr3_2:35811422-35811441 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr3_2:35811488-35811507 Msa0404440:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr3_2:35811565-35811584 Msa0404440:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr3_2:35811601-35811620 Msa0404440:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr3_2:35811647-35811666 Msa0404440:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr3_2:35812492-35812511 Msa0404440:intron 25.0%
! CTCTGAGAAATATGTATTTG+AGG + chr3_2:35811259-35811278 Msa0404440:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr3_2:35811382-35811401 Msa0404440:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr3_2:35811386-35811405 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr3_2:35811756-35811775 Msa0404440:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr3_2:35811836-35811855 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr3_2:35812017-35812036 Msa0404440:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr3_2:35812059-35812078 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr3_2:35812106-35812125 Msa0404440:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr3_2:35812440-35812459 Msa0404440:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr3_2:35812544-35812563 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr3_2:35812555-35812574 Msa0404440:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr3_2:35812729-35812748 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr3_2:35812751-35812770 Msa0404440:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr3_2:35812785-35812804 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr3_2:35812786-35812805 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr3_2:35812938-35812957 None:intergenic 30.0%
! CTCTGAGAAATATGTATTTG+AGG + chr3_2:35811259-35811278 Msa0404440:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr3_2:35811382-35811401 Msa0404440:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr3_2:35811386-35811405 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr3_2:35811756-35811775 Msa0404440:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr3_2:35811836-35811855 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr3_2:35812017-35812036 Msa0404440:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr3_2:35812059-35812078 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr3_2:35812106-35812125 Msa0404440:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr3_2:35812440-35812459 Msa0404440:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr3_2:35812544-35812563 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr3_2:35812555-35812574 Msa0404440:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr3_2:35812729-35812748 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr3_2:35812751-35812770 Msa0404440:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr3_2:35812785-35812804 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr3_2:35812786-35812805 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr3_2:35812938-35812957 None:intergenic 30.0%
ACTTGTGAATGTGATTCTTG+TGG - chr3_2:35811131-35811150 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr3_2:35811162-35811181 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr3_2:35811275-35811294 Msa0404440:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr3_2:35811276-35811295 Msa0404440:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr3_2:35811296-35811315 Msa0404440:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr3_2:35811729-35811748 Msa0404440:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr3_2:35811879-35811898 Msa0404440:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr3_2:35811912-35811931 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr3_2:35811970-35811989 Msa0404440:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr3_2:35811999-35812018 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr3_2:35812000-35812019 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr3_2:35812010-35812029 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr3_2:35812023-35812042 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr3_2:35812063-35812082 Msa0404440:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr3_2:35812142-35812161 Msa0404440:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr3_2:35812152-35812171 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr3_2:35812150-35812169 Msa0404440:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr3_2:35812197-35812216 Msa0404440:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr3_2:35812287-35812306 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr3_2:35812319-35812338 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr3_2:35812400-35812419 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr3_2:35812655-35812674 Msa0404440:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr3_2:35812777-35812796 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr3_2:35812787-35812806 Msa0404440:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr3_2:35812788-35812807 Msa0404440:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr3_2:35813033-35813052 None:intergenic 35.0%
ACTTGTGAATGTGATTCTTG+TGG - chr3_2:35811131-35811150 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr3_2:35811162-35811181 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr3_2:35811275-35811294 Msa0404440:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr3_2:35811276-35811295 Msa0404440:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr3_2:35811296-35811315 Msa0404440:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr3_2:35811729-35811748 Msa0404440:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr3_2:35811879-35811898 Msa0404440:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr3_2:35811912-35811931 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr3_2:35811970-35811989 Msa0404440:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr3_2:35811999-35812018 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr3_2:35812000-35812019 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr3_2:35812010-35812029 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr3_2:35812023-35812042 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr3_2:35812063-35812082 Msa0404440:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr3_2:35812142-35812161 Msa0404440:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr3_2:35812152-35812171 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr3_2:35812150-35812169 Msa0404440:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr3_2:35812197-35812216 Msa0404440:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr3_2:35812287-35812306 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr3_2:35812319-35812338 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr3_2:35812400-35812419 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr3_2:35812655-35812674 Msa0404440:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr3_2:35812777-35812796 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr3_2:35812787-35812806 Msa0404440:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr3_2:35812788-35812807 Msa0404440:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr3_2:35813033-35813052 None:intergenic 35.0%
TGTGAATGTGATTCTTGTGG+TGG - chr3_2:35811128-35811147 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr3_2:35811416-35811435 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr3_2:35811780-35811799 Msa0404440:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr3_2:35811913-35811932 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr3_2:35811924-35811943 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr3_2:35811969-35811988 Msa0404440:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr3_2:35812006-35812025 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr3_2:35812003-35812022 Msa0404440:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr3_2:35812092-35812111 Msa0404440:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr3_2:35812212-35812231 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr3_2:35812209-35812228 Msa0404440:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr3_2:35812219-35812238 Msa0404440:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr3_2:35812236-35812255 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr3_2:35812236-35812255 Msa0404440:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr3_2:35812237-35812256 Msa0404440:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr3_2:35812305-35812324 Msa0404440:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr3_2:35812375-35812394 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr3_2:35812388-35812407 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr3_2:35812395-35812414 Msa0404440:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr3_2:35812425-35812444 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr3_2:35812600-35812619 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr3_2:35812637-35812656 Msa0404440:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr3_2:35812650-35812669 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr3_2:35812658-35812677 Msa0404440:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr3_2:35812664-35812683 Msa0404440:CDS 40.0%
TGTGAATGTGATTCTTGTGG+TGG - chr3_2:35811128-35811147 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr3_2:35811416-35811435 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr3_2:35811780-35811799 Msa0404440:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr3_2:35811913-35811932 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr3_2:35811924-35811943 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr3_2:35811969-35811988 Msa0404440:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr3_2:35812006-35812025 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr3_2:35812003-35812022 Msa0404440:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr3_2:35812092-35812111 Msa0404440:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr3_2:35812212-35812231 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr3_2:35812209-35812228 Msa0404440:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr3_2:35812219-35812238 Msa0404440:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr3_2:35812236-35812255 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr3_2:35812236-35812255 Msa0404440:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr3_2:35812237-35812256 Msa0404440:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr3_2:35812305-35812324 Msa0404440:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr3_2:35812375-35812394 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr3_2:35812388-35812407 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr3_2:35812395-35812414 Msa0404440:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr3_2:35812425-35812444 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr3_2:35812600-35812619 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr3_2:35812637-35812656 Msa0404440:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr3_2:35812650-35812669 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr3_2:35812658-35812677 Msa0404440:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr3_2:35812664-35812683 Msa0404440:CDS 40.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr3_2:35811122-35811141 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr3_2:35811410-35811429 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr3_2:35811770-35811789 Msa0404440:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr3_2:35811771-35811790 Msa0404440:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr3_2:35811783-35811802 Msa0404440:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr3_2:35811794-35811813 Msa0404440:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr3_2:35811805-35811824 Msa0404440:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr3_2:35811813-35811832 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr3_2:35812135-35812154 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr3_2:35812136-35812155 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr3_2:35812137-35812156 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr3_2:35812158-35812177 Msa0404440:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr3_2:35812159-35812178 Msa0404440:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr3_2:35812160-35812179 Msa0404440:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr3_2:35812227-35812246 Msa0404440:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr3_2:35812228-35812247 Msa0404440:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr3_2:35812238-35812257 Msa0404440:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr3_2:35812252-35812271 Msa0404440:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr3_2:35812253-35812272 Msa0404440:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr3_2:35812277-35812296 Msa0404440:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr3_2:35812424-35812443 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr3_2:35812612-35812631 Msa0404440:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr3_2:35812633-35812652 Msa0404440:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr3_2:35812806-35812825 None:intergenic 45.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr3_2:35811122-35811141 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr3_2:35811410-35811429 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr3_2:35811770-35811789 Msa0404440:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr3_2:35811771-35811790 Msa0404440:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr3_2:35811783-35811802 Msa0404440:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr3_2:35811794-35811813 Msa0404440:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr3_2:35811805-35811824 Msa0404440:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr3_2:35811813-35811832 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr3_2:35812135-35812154 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr3_2:35812136-35812155 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr3_2:35812137-35812156 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr3_2:35812158-35812177 Msa0404440:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr3_2:35812159-35812178 Msa0404440:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr3_2:35812160-35812179 Msa0404440:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr3_2:35812227-35812246 Msa0404440:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr3_2:35812228-35812247 Msa0404440:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr3_2:35812238-35812257 Msa0404440:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr3_2:35812252-35812271 Msa0404440:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr3_2:35812253-35812272 Msa0404440:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr3_2:35812277-35812296 Msa0404440:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr3_2:35812424-35812443 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr3_2:35812612-35812631 Msa0404440:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr3_2:35812633-35812652 Msa0404440:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr3_2:35812806-35812825 None:intergenic 45.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr3_2:35811103-35811122 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr3_2:35811114-35811133 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr3_2:35811772-35811791 Msa0404440:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr3_2:35811793-35811812 Msa0404440:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr3_2:35811825-35811844 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr3_2:35811865-35811884 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr3_2:35811973-35811992 Msa0404440:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr3_2:35812239-35812258 Msa0404440:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr3_2:35812273-35812292 Msa0404440:CDS 50.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr3_2:35811103-35811122 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr3_2:35811114-35811133 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr3_2:35811772-35811791 Msa0404440:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr3_2:35811793-35811812 Msa0404440:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr3_2:35811825-35811844 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr3_2:35811865-35811884 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr3_2:35811973-35811992 Msa0404440:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr3_2:35812239-35812258 Msa0404440:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr3_2:35812273-35812292 Msa0404440:CDS 50.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr3_2:35811115-35811134 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr3_2:35811402-35811421 Msa0404440:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr3_2:35811981-35812000 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr3_2:35812126-35812145 Msa0404440:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr3_2:35812170-35812189 None:intergenic 55.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr3_2:35811115-35811134 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr3_2:35811402-35811421 Msa0404440:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr3_2:35811981-35812000 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr3_2:35812126-35812145 Msa0404440:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr3_2:35812170-35812189 None:intergenic 55.0%
CAAGGGCCACCCTGACAACT+TGG - chr3_2:35811982-35812001 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr3_2:35812910-35812929 Msa0404440:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr3_2:35812911-35812930 Msa0404440:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr3_2:35812920-35812939 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr3_2:35812921-35812940 None:intergenic 60.0%
CAAGGGCCACCCTGACAACT+TGG - chr3_2:35811982-35812001 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr3_2:35812910-35812929 Msa0404440:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr3_2:35812911-35812930 Msa0404440:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr3_2:35812920-35812939 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr3_2:35812921-35812940 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 35811098 35813092 35811098 ID=Msa0404440;Name=Msa0404440
chr3_2 mRNA 35811098 35813092 35811098 ID=Msa0404440-mRNA-1;Parent=Msa0404440;Name=Msa0404440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=232|1|1|1|0.5|0.33|3|388|268
chr3_2 exon 35811098 35811297 35811098 ID=Msa0404440-mRNA-1:exon:7262;Parent=Msa0404440-mRNA-1
chr3_2 exon 35811751 35812461 35811751 ID=Msa0404440-mRNA-1:exon:7263;Parent=Msa0404440-mRNA-1
chr3_2 exon 35812577 35813092 35812577 ID=Msa0404440-mRNA-1:exon:7264;Parent=Msa0404440-mRNA-1
chr3_2 five_prime_UTR 35811098 35811297 35811098 ID=Msa0404440-mRNA-1:five_prime_utr;Parent=Msa0404440-mRNA-1
chr3_2 five_prime_UTR 35811751 35811782 35811751 ID=Msa0404440-mRNA-1:five_prime_utr;Parent=Msa0404440-mRNA-1
chr3_2 CDS 35811783 35812461 35811783 ID=Msa0404440-mRNA-1:cds;Parent=Msa0404440-mRNA-1
chr3_2 CDS 35812577 35812704 35812577 ID=Msa0404440-mRNA-1:cds;Parent=Msa0404440-mRNA-1
chr3_2 three_prime_UTR 35812705 35813092 35812705 ID=Msa0404440-mRNA-1:three_prime_utr;Parent=Msa0404440-mRNA-1
Gene Sequence

>Msa0404440

ATGAACTTGGGGTTTCTTGGTGGCATACCTTGGGTTAAACCTCGGAGTAACCAAGATTCAGCAATACATTTAGTTCAAACCACTGCGTTTACTTCGCAAGTCAAACATGAATCATCTGGTATTGATCCCAAATTTACTCCAGATTCAGCGACTCATTTAGTTCAAAAAGCACAACAAGAGTCATCTGTTAATGATCCCAAGTTGTCAGGGTGGCCCTTGTCCTTCCTTTCGTTATTTCCATGGACAAATAAAGATGGAGAAAAGTTTCAAAGACCAACTACGATCAATAAAGAGTTGAAGAGGCATGCACAAAATCGCGAAAACGTTGTTGGAAAAGATAATATGGCTACCCCTTTGCGCTTTAGGCCTTATGTTTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCACAGTTGTTTCCTAGATATGGACATTACTGTGGACCTAATTGGTCAAGTGGGAAAGATGGGGGATCTCTTGTTTGGGACAAGCGTCCAATTGATTGGTTGGATTACTGCTGCTATTGCCATGATATAGGATACGATACTCATGATCAAGCTAAACTGCTGAAAGCTGATTTAGCCTTTCTTGAGTGCCTAGAGAATCGCCATATTTTGCGTACTAAAGGAGACCCGCACGTTGCTCATCTTTACAAGACAATGTGCATTAATGGTCTTAAGAATTTTCTAATACCTTACAGAACGAATCTCGTAAGTCTACAACAGTCAGGACGATCATTGATCCAGTTTGGATGGCTAAGCAATTTGAAATGGAGGAGTTGGAATTACCAAAAAGAATGA

Protein sequence

>Msa0404440

MNLGFLGGIPWVKPRSNQDSAIHLVQTTAFTSQVKHESSGIDPKFTPDSATHLVQKAQQESSVNDPKLSGWPLSFLSLFPWTNKDGEKFQRPTTINKELKRHAQNRENVVGKDNMATPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDKRPIDWLDYCCYCHDIGYDTHDQAKLLKADLAFLECLENRHILRTKGDPHVAHLYKTMCINGLKNFLIPYRTNLVSLQQSGRSLIQFGWLSNLKWRSWNYQKE*