AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404330 MtrunA17_Chr3g0094361 97.778 270 4 1 1 268 1 270 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404330 AT4G29070.1 54.478 268 111 6 1 267 1 258 6.87e-98 287
Msa0404330 AT4G29070.2 54.478 268 111 6 1 267 1 258 6.87e-98 287

Find 104 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTGAATCTGGAGTAAATT+TGG 0.151133 3_2:-35170393 None:intergenic
TACAAGACAATGTGCATTAA+TGG 0.165763 3_2:+35170923 Msa0404330:CDS
AAGAATGAAAATTTAGTAAA+TGG 0.192895 3_2:+35171180 Msa0404330:exon
AGGCAATCTTGAAGATATTA+AGG 0.239033 3_2:-35171266 None:intergenic
CGTTGTTGGAAAAGATAATA+TGG 0.290049 3_2:+35170589 Msa0404330:CDS
TCACAGTTGTTTCCTAGATA+TGG 0.298208 3_2:+35170680 Msa0404330:CDS
CTCCTTTAGTACGCAAAATA+TGG 0.299910 3_2:-35170880 None:intergenic
ACAATGAACTTGGGGTTTCT+TGG 0.306848 3_2:+35170263 Msa0404330:exon
ATTCACAATTTGTAGCTCTT+AGG 0.313226 3_2:-35171209 None:intergenic
GATAGAGTTTGAAGGAGAAT+TGG 0.320944 3_2:-35169642 None:intergenic
TCTTTCCCACTTGACCAATT+AGG 0.322806 3_2:-35170716 None:intergenic
AGAATGAAAATTTAGTAAAT+GGG 0.334127 3_2:+35171181 Msa0404330:exon
GACATTACTGTGGACCTAAT+TGG 0.334471 3_2:+35170702 Msa0404330:CDS
ACTAAATGAGTCGCTGAATC+TGG 0.356726 3_2:-35170404 None:intergenic
GTTTCTTGGTGGCATACCTT+GGG 0.365840 3_2:+35170277 Msa0404330:CDS
TTTGAGGACTTGCTTTCAAA+TGG 0.373399 3_2:+35169758 Msa0404330:five_prime_UTR
GGACGATCATTGATCCAGTT+TGG 0.376412 3_2:+35171116 Msa0404330:CDS
GGTTTCTTGGTGGCATACCT+TGG 0.379275 3_2:+35170276 Msa0404330:CDS
TGGCTACCCCTTTGCGCTTT+AGG 0.380144 3_2:+35170609 Msa0404330:CDS
GATGGCTAAGCAATTTGAAA+TGG 0.388789 3_2:+35171138 Msa0404330:CDS
CTTTAGGCCTTATGTTTGTA+AGG 0.395654 3_2:+35170625 Msa0404330:CDS
AATTGCTTAGCCATCCAAAC+TGG 0.398532 3_2:-35171130 None:intergenic
GTTAATGATCCCAAGTTGTC+AGG 0.399483 3_2:+35170452 Msa0404330:CDS
TGTAAGGTTCCATGGCATAC+AGG 0.400157 3_2:+35170641 Msa0404330:CDS
CAAAATCGCGAAAACGTTGT+TGG 0.403825 3_2:+35170575 Msa0404330:CDS
AACTCTTTATTGATCGTAGT+TGG 0.408341 3_2:-35170539 None:intergenic
CTAAATGTATTGCTGAATCT+TGG 0.410023 3_2:-35170316 None:intergenic
CCACAGTAATGTCCATATCT+AGG 0.418492 3_2:-35170692 None:intergenic
GGGACAAGCGTCCAATTGAT+TGG 0.422404 3_2:+35170756 Msa0404330:CDS
CTCTGAGAAATATGTATTTG+AGG 0.424162 3_2:+35169742 Msa0404330:five_prime_UTR
TGCTGCTATTGCCATGATAT+AGG 0.424949 3_2:+35170788 Msa0404330:CDS
CCTTCCTTTCGTTATTTCCA+TGG 0.427510 3_2:+35170486 Msa0404330:CDS
GCTGAATCTGGAGTAAATTT+GGG 0.427880 3_2:-35170392 None:intergenic
GCAATTTGAAATGGAGGAGT+TGG 0.430368 3_2:+35171147 Msa0404330:CDS
CAAGCGTCCAATTGATTGGT+TGG 0.431275 3_2:+35170760 Msa0404330:CDS
CATAAGGCCTAAAGCGCAAA+GGG 0.438079 3_2:-35170616 None:intergenic
TTTCTCAGAGTTAAAACTAA+AGG 0.438129 3_2:-35169729 None:intergenic
CAAGTCAAACATGAATCATC+TGG 0.443608 3_2:+35170362 Msa0404330:CDS
CTTACGAGATTCGTTCTGTA+AGG 0.444009 3_2:-35171080 None:intergenic
CAAGGGCCACCCTGACAACT+TGG 0.449292 3_2:-35170462 None:intergenic
AATTGGTCAAGTGGGAAAGA+TGG 0.457230 3_2:+35170719 Msa0404330:CDS
ATTGGTCAAGTGGGAAAGAT+GGG 0.460984 3_2:+35170720 Msa0404330:CDS
CTTATGTTTGTAAGGTTCCA+TGG 0.465114 3_2:+35170633 Msa0404330:CDS
AATCAAATGATAGAGTTTGA+AGG 0.478477 3_2:-35169650 None:intergenic
TTGAGGACTTGCTTTCAAAT+GGG 0.483591 3_2:+35169759 Msa0404330:five_prime_UTR
TTTCCATGGACAAATAAAGA+TGG 0.485141 3_2:+35170500 Msa0404330:CDS
CAGTAATCCAACCAATCAAT+TGG 0.489028 3_2:-35170767 None:intergenic
TCTCCATCTTTATTTGTCCA+TGG 0.491763 3_2:-35170503 None:intergenic
TAACATAATATTTAGTGTTG+TGG 0.491903 3_2:+35170236 Msa0404330:five_prime_UTR
GGCAATCTTGAAGATATTAA+GGG 0.493765 3_2:-35171265 None:intergenic
TTGTGGTGGCACAATGAACT+TGG 0.497520 3_2:+35170253 Msa0404330:exon
ATGAACTTGGGGTTTCTTGG+TGG 0.498099 3_2:+35170266 Msa0404330:CDS
GCAAAATATGGCGATTCTCT+AGG 0.500333 3_2:-35170868 None:intergenic
CATGGAACCTTACAAACATA+AGG 0.504158 3_2:-35170632 None:intergenic
ACGGAAAGAGGGTCGATTTG+TGG 0.506575 3_2:-35169583 None:intergenic
CATAATATTTAGTGTTGTGG+TGG 0.511970 3_2:+35170239 Msa0404330:five_prime_UTR
GAGTATCGTATCCTATATCA+TGG 0.517155 3_2:-35170799 None:intergenic
GAATGAAAATTTAGTAAATG+GGG 0.519903 3_2:+35171182 Msa0404330:exon
GTAAGGTTCCATGGCATACA+GGG 0.522334 3_2:+35170642 Msa0404330:CDS
ATTCTCTAGGCACTCAAGAA+AGG 0.522803 3_2:-35170855 None:intergenic
TGTGGTGGCACAATGAACTT+GGG 0.524930 3_2:+35170254 Msa0404330:exon
ATGTGCAAATTTGCACATGA+TGG 0.527273 3_2:-35171513 None:intergenic
GATCATTGATCCAGTTTGGA+TGG 0.540863 3_2:+35171120 Msa0404330:CDS
TTTCGACCCGTGTGACGCAC+GGG 0.544446 3_2:+35171394 Msa0404330:three_prime_UTR
CTCGTAAGTCTACAACAGTC+AGG 0.550370 3_2:+35171095 Msa0404330:CDS
CTTTCGACCCGTGTGACGCA+CGG 0.551765 3_2:+35171393 Msa0404330:three_prime_UTR
ACTTGTGAATGTGATTCTTG+TGG 0.552138 3_2:-35169611 None:intergenic
CTTGTGGTGGAGACGGAAAG+AGG 0.554065 3_2:-35169595 None:intergenic
AATATCTTCAAGATTGCCTG+TGG 0.561169 3_2:+35171270 Msa0404330:three_prime_UTR
TTGGTCAAGTGGGAAAGATG+GGG 0.571014 3_2:+35170721 Msa0404330:CDS
GGCTAAGCAATTTGAAATGG+AGG 0.576092 3_2:+35171141 Msa0404330:CDS
TGTAAAGATGAGCAACGTGC+GGG 0.578466 3_2:-35170904 None:intergenic
GATAGGACCCGTGCGTCACA+CGG 0.581738 3_2:-35171401 None:intergenic
CGATCAATAAAGAGTTGAAG+AGG 0.584391 3_2:+35170546 Msa0404330:CDS
TGTGGACCTAATTGGTCAAG+TGG 0.591356 3_2:+35170710 Msa0404330:CDS
TGTGAATGTGATTCTTGTGG+TGG 0.594212 3_2:-35169608 None:intergenic
TGTGATTCTTGTGGTGGAGA+CGG 0.594696 3_2:-35169602 None:intergenic
AAGGGCCACCCTGACAACTT+GGG 0.599062 3_2:-35170461 None:intergenic
GCTCTAACCCCTGTATGCCA+TGG 0.599360 3_2:-35170650 None:intergenic
TTGTCCATGGAAATAACGAA+AGG 0.600344 3_2:-35170490 None:intergenic
TTACTCCGAGGTTTAACCCA+AGG 0.601608 3_2:-35170293 None:intergenic
AATGAAAATTTAGTAAATGG+GGG 0.602393 3_2:+35171183 Msa0404330:exon
ACATAAGGCCTAAAGCGCAA+AGG 0.604279 3_2:-35170617 None:intergenic
CAAGCTCATTATACACCCAC+AGG 0.605164 3_2:-35171286 None:intergenic
TGATCATTATAACAGTCGAT+AGG 0.606275 3_2:-35171418 None:intergenic
TTAATGATCCCAAGTTGTCA+GGG 0.607070 3_2:+35170453 Msa0404330:CDS
CCATGGAAATAACGAAAGGA+AGG 0.609777 3_2:-35170486 None:intergenic
ATATCTTCAAGATTGCCTGT+GGG 0.631959 3_2:+35171271 Msa0404330:three_prime_UTR
AAATAACGAAAGGAAGGACA+AGG 0.631990 3_2:-35170480 None:intergenic
CCTAGATATGGACATTACTG+TGG 0.633496 3_2:+35170692 Msa0404330:CDS
GCTGAATCTTGGTTACTCCG+AGG 0.640091 3_2:-35170305 None:intergenic
TTGTGGTGGAGACGGAAAGA+GGG 0.641991 3_2:-35169594 None:intergenic
GCATACCTTGGGTTAAACCT+CGG 0.642539 3_2:+35170288 Msa0404330:CDS
TGAAGATATTAAGGGTGACA+AGG 0.644485 3_2:-35171257 None:intergenic
TGGTCAAGTGGGAAAGATGG+GGG 0.645782 3_2:+35170722 Msa0404330:CDS
GTGGACCTAATTGGTCAAGT+GGG 0.651606 3_2:+35170711 Msa0404330:CDS
GTGGTGGCACAATGAACTTG+GGG 0.655593 3_2:+35170255 Msa0404330:exon
TTGTAAAGATGAGCAACGTG+CGG 0.657865 3_2:-35170905 None:intergenic
TAAGGTTCCATGGCATACAG+GGG 0.665512 3_2:+35170643 Msa0404330:CDS
ATAGGACCCGTGCGTCACAC+GGG 0.666473 3_2:-35171400 None:intergenic
GACTTGCGAAGTAAACGCAG+TGG 0.668908 3_2:-35170345 None:intergenic
ATGATCCCAAGTTGTCAGGG+TGG 0.699677 3_2:+35170456 Msa0404330:CDS
AATAACGAAAGGAAGGACAA+GGG 0.717040 3_2:-35170479 None:intergenic
ATAAGGCCTAAAGCGCAAAG+GGG 0.758660 3_2:-35170615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAATCATATTATATATA+TGG - chr3_2:35170194-35170213 None:intergenic 10.0%
!! AATCAATCATATTATATATA+TGG - chr3_2:35170194-35170213 None:intergenic 10.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr3_2:35170153-35170172 Msa0404330:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr3_2:35171178-35171197 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr3_2:35171180-35171199 Msa0404330:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr3_2:35171181-35171200 Msa0404330:exon 15.0%
!!! ACTAATGATTTACAATTTTA+GGG + chr3_2:35170153-35170172 Msa0404330:intron 15.0%
!!! TACTAAATTTTCATTCTTTT+TGG - chr3_2:35171178-35171197 None:intergenic 15.0%
!! AAGAATGAAAATTTAGTAAA+TGG + chr3_2:35171180-35171199 Msa0404330:exon 15.0%
!! AGAATGAAAATTTAGTAAAT+GGG + chr3_2:35171181-35171200 Msa0404330:exon 15.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr3_2:35170030-35170049 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr3_2:35170114-35170133 Msa0404330:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr3_2:35170152-35170171 Msa0404330:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr3_2:35170236-35170255 Msa0404330:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr3_2:35171034-35171053 Msa0404330:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr3_2:35171182-35171201 Msa0404330:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr3_2:35171183-35171202 Msa0404330:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr3_2:35171320-35171339 None:intergenic 20.0%
!! ACTAAAATTTACAATTTCAG+TGG - chr3_2:35170030-35170049 None:intergenic 20.0%
!!! TGATTTTAAGTATTCATCTT+TGG + chr3_2:35170114-35170133 Msa0404330:intron 20.0%
!!! GACTAATGATTTACAATTTT+AGG + chr3_2:35170152-35170171 Msa0404330:intron 20.0%
!! TAACATAATATTTAGTGTTG+TGG + chr3_2:35170236-35170255 Msa0404330:five_prime_UTR 20.0%
!!! TGTTTTTTTTCTCTATGAAA+TGG + chr3_2:35171034-35171053 Msa0404330:intron 20.0%
!! GAATGAAAATTTAGTAAATG+GGG + chr3_2:35171182-35171201 Msa0404330:exon 20.0%
!! AATGAAAATTTAGTAAATGG+GGG + chr3_2:35171183-35171202 Msa0404330:exon 20.0%
!!! CATAAAAAAAAGTTACTTTG+TGG - chr3_2:35171320-35171339 None:intergenic 20.0%
! AATCAAATGATAGAGTTTGA+AGG - chr3_2:35169653-35169672 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr3_2:35169732-35169751 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr3_2:35169905-35169924 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr3_2:35169971-35169990 Msa0404330:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr3_2:35170048-35170067 Msa0404330:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr3_2:35170084-35170103 Msa0404330:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr3_2:35170130-35170149 Msa0404330:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr3_2:35170975-35170994 Msa0404330:intron 25.0%
! AATCAAATGATAGAGTTTGA+AGG - chr3_2:35169653-35169672 None:intergenic 25.0%
! TTTCTCAGAGTTAAAACTAA+AGG - chr3_2:35169732-35169751 None:intergenic 25.0%
!! ATCATTTTCATGAAATTCCA+TGG - chr3_2:35169905-35169924 None:intergenic 25.0%
!! TGAAATTATATGTTGCTGTT+AGG + chr3_2:35169971-35169990 Msa0404330:intron 25.0%
! GTCACACATTATATATTTGT+TGG + chr3_2:35170048-35170067 Msa0404330:intron 25.0%
!!! TTTTCGTAATTGATTTTGCT+AGG + chr3_2:35170084-35170103 Msa0404330:intron 25.0%
!! TCTTTGGATTAGAACAATTT+AGG + chr3_2:35170130-35170149 Msa0404330:intron 25.0%
!! ATTTGTGCTTTTCTGTTATT+CGG + chr3_2:35170975-35170994 Msa0404330:intron 25.0%
! CTCTGAGAAATATGTATTTG+AGG + chr3_2:35169742-35169761 Msa0404330:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr3_2:35169865-35169884 Msa0404330:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr3_2:35169869-35169888 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr3_2:35170239-35170258 Msa0404330:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr3_2:35170319-35170338 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr3_2:35170500-35170519 Msa0404330:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr3_2:35170542-35170561 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr3_2:35170589-35170608 Msa0404330:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr3_2:35170923-35170942 Msa0404330:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr3_2:35171027-35171046 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr3_2:35171038-35171057 Msa0404330:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr3_2:35171212-35171231 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr3_2:35171234-35171253 Msa0404330:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr3_2:35171268-35171287 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr3_2:35171269-35171288 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr3_2:35171421-35171440 None:intergenic 30.0%
! CTCTGAGAAATATGTATTTG+AGG + chr3_2:35169742-35169761 Msa0404330:five_prime_UTR 30.0%
TCCAATTTCATCATAGAGAA+TGG + chr3_2:35169865-35169884 Msa0404330:intron 30.0%
TCCATTCTCTATGATGAAAT+TGG - chr3_2:35169869-35169888 None:intergenic 30.0%
CATAATATTTAGTGTTGTGG+TGG + chr3_2:35170239-35170258 Msa0404330:five_prime_UTR 30.0%
CTAAATGTATTGCTGAATCT+TGG - chr3_2:35170319-35170338 None:intergenic 30.0%
TTTCCATGGACAAATAAAGA+TGG + chr3_2:35170500-35170519 Msa0404330:CDS 30.0%
AACTCTTTATTGATCGTAGT+TGG - chr3_2:35170542-35170561 None:intergenic 30.0%
CGTTGTTGGAAAAGATAATA+TGG + chr3_2:35170589-35170608 Msa0404330:CDS 30.0%
TACAAGACAATGTGCATTAA+TGG + chr3_2:35170923-35170942 Msa0404330:CDS 30.0%
GAGAAAAAAAACAAAGTCAG+CGG - chr3_2:35171027-35171046 None:intergenic 30.0%
!!! TTTTTTCTCTATGAAATGGC+AGG + chr3_2:35171038-35171057 Msa0404330:intron 30.0%
ATTCACAATTTGTAGCTCTT+AGG - chr3_2:35171212-35171231 None:intergenic 30.0%
!! CATCTAATTTTGAAAGCACA+TGG + chr3_2:35171234-35171253 Msa0404330:three_prime_UTR 30.0%
GGCAATCTTGAAGATATTAA+GGG - chr3_2:35171268-35171287 None:intergenic 30.0%
AGGCAATCTTGAAGATATTA+AGG - chr3_2:35171269-35171288 None:intergenic 30.0%
TGATCATTATAACAGTCGAT+AGG - chr3_2:35171421-35171440 None:intergenic 30.0%
ACTTGTGAATGTGATTCTTG+TGG - chr3_2:35169614-35169633 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr3_2:35169645-35169664 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr3_2:35169758-35169777 Msa0404330:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr3_2:35169759-35169778 Msa0404330:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr3_2:35169779-35169798 Msa0404330:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr3_2:35170212-35170231 Msa0404330:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr3_2:35170362-35170381 Msa0404330:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr3_2:35170395-35170414 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr3_2:35170453-35170472 Msa0404330:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr3_2:35170482-35170501 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr3_2:35170483-35170502 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr3_2:35170493-35170512 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr3_2:35170506-35170525 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr3_2:35170546-35170565 Msa0404330:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr3_2:35170625-35170644 Msa0404330:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr3_2:35170635-35170654 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr3_2:35170633-35170652 Msa0404330:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr3_2:35170680-35170699 Msa0404330:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr3_2:35170770-35170789 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr3_2:35170802-35170821 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr3_2:35170883-35170902 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr3_2:35171138-35171157 Msa0404330:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr3_2:35171260-35171279 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr3_2:35171270-35171289 Msa0404330:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr3_2:35171271-35171290 Msa0404330:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr3_2:35171516-35171535 None:intergenic 35.0%
ACTTGTGAATGTGATTCTTG+TGG - chr3_2:35169614-35169633 None:intergenic 35.0%
GATAGAGTTTGAAGGAGAAT+TGG - chr3_2:35169645-35169664 None:intergenic 35.0%
! TTTGAGGACTTGCTTTCAAA+TGG + chr3_2:35169758-35169777 Msa0404330:five_prime_UTR 35.0%
! TTGAGGACTTGCTTTCAAAT+GGG + chr3_2:35169759-35169778 Msa0404330:five_prime_UTR 35.0%
!! GGGTATGTGTAATGCTTTTT+AGG + chr3_2:35169779-35169798 Msa0404330:intron 35.0%
!! TTTAGCTGTTTTCTGTTTGC+AGG + chr3_2:35170212-35170231 Msa0404330:intron 35.0%
CAAGTCAAACATGAATCATC+TGG + chr3_2:35170362-35170381 Msa0404330:CDS 35.0%
! GCTGAATCTGGAGTAAATTT+GGG - chr3_2:35170395-35170414 None:intergenic 35.0%
TTAATGATCCCAAGTTGTCA+GGG + chr3_2:35170453-35170472 Msa0404330:CDS 35.0%
AATAACGAAAGGAAGGACAA+GGG - chr3_2:35170482-35170501 None:intergenic 35.0%
AAATAACGAAAGGAAGGACA+AGG - chr3_2:35170483-35170502 None:intergenic 35.0%
TTGTCCATGGAAATAACGAA+AGG - chr3_2:35170493-35170512 None:intergenic 35.0%
! TCTCCATCTTTATTTGTCCA+TGG - chr3_2:35170506-35170525 None:intergenic 35.0%
CGATCAATAAAGAGTTGAAG+AGG + chr3_2:35170546-35170565 Msa0404330:CDS 35.0%
! CTTTAGGCCTTATGTTTGTA+AGG + chr3_2:35170625-35170644 Msa0404330:CDS 35.0%
CATGGAACCTTACAAACATA+AGG - chr3_2:35170635-35170654 None:intergenic 35.0%
CTTATGTTTGTAAGGTTCCA+TGG + chr3_2:35170633-35170652 Msa0404330:CDS 35.0%
! TCACAGTTGTTTCCTAGATA+TGG + chr3_2:35170680-35170699 Msa0404330:CDS 35.0%
CAGTAATCCAACCAATCAAT+TGG - chr3_2:35170770-35170789 None:intergenic 35.0%
! GAGTATCGTATCCTATATCA+TGG - chr3_2:35170802-35170821 None:intergenic 35.0%
CTCCTTTAGTACGCAAAATA+TGG - chr3_2:35170883-35170902 None:intergenic 35.0%
GATGGCTAAGCAATTTGAAA+TGG + chr3_2:35171138-35171157 Msa0404330:CDS 35.0%
TGAAGATATTAAGGGTGACA+AGG - chr3_2:35171260-35171279 None:intergenic 35.0%
AATATCTTCAAGATTGCCTG+TGG + chr3_2:35171270-35171289 Msa0404330:three_prime_UTR 35.0%
ATATCTTCAAGATTGCCTGT+GGG + chr3_2:35171271-35171290 Msa0404330:three_prime_UTR 35.0%
ATGTGCAAATTTGCACATGA+TGG - chr3_2:35171516-35171535 None:intergenic 35.0%
TGTGAATGTGATTCTTGTGG+TGG - chr3_2:35169611-35169630 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr3_2:35169899-35169918 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr3_2:35170263-35170282 Msa0404330:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr3_2:35170396-35170415 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr3_2:35170407-35170426 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr3_2:35170452-35170471 Msa0404330:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr3_2:35170489-35170508 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr3_2:35170486-35170505 Msa0404330:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr3_2:35170575-35170594 Msa0404330:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr3_2:35170695-35170714 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr3_2:35170692-35170711 Msa0404330:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr3_2:35170702-35170721 Msa0404330:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr3_2:35170719-35170738 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr3_2:35170719-35170738 Msa0404330:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr3_2:35170720-35170739 Msa0404330:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr3_2:35170788-35170807 Msa0404330:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr3_2:35170858-35170877 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr3_2:35170871-35170890 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr3_2:35170878-35170897 Msa0404330:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr3_2:35170908-35170927 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr3_2:35171083-35171102 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr3_2:35171120-35171139 Msa0404330:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr3_2:35171133-35171152 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr3_2:35171141-35171160 Msa0404330:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr3_2:35171147-35171166 Msa0404330:CDS 40.0%
TGTGAATGTGATTCTTGTGG+TGG - chr3_2:35169611-35169630 None:intergenic 40.0%
TTCATGAAATTCCATGGCTC+TGG - chr3_2:35169899-35169918 None:intergenic 40.0%
ACAATGAACTTGGGGTTTCT+TGG + chr3_2:35170263-35170282 Msa0404330:exon 40.0%
! CGCTGAATCTGGAGTAAATT+TGG - chr3_2:35170396-35170415 None:intergenic 40.0%
ACTAAATGAGTCGCTGAATC+TGG - chr3_2:35170407-35170426 None:intergenic 40.0%
GTTAATGATCCCAAGTTGTC+AGG + chr3_2:35170452-35170471 Msa0404330:CDS 40.0%
CCATGGAAATAACGAAAGGA+AGG - chr3_2:35170489-35170508 None:intergenic 40.0%
! CCTTCCTTTCGTTATTTCCA+TGG + chr3_2:35170486-35170505 Msa0404330:CDS 40.0%
CAAAATCGCGAAAACGTTGT+TGG + chr3_2:35170575-35170594 Msa0404330:CDS 40.0%
CCACAGTAATGTCCATATCT+AGG - chr3_2:35170695-35170714 None:intergenic 40.0%
CCTAGATATGGACATTACTG+TGG + chr3_2:35170692-35170711 Msa0404330:CDS 40.0%
GACATTACTGTGGACCTAAT+TGG + chr3_2:35170702-35170721 Msa0404330:CDS 40.0%
TCTTTCCCACTTGACCAATT+AGG - chr3_2:35170719-35170738 None:intergenic 40.0%
AATTGGTCAAGTGGGAAAGA+TGG + chr3_2:35170719-35170738 Msa0404330:CDS 40.0%
ATTGGTCAAGTGGGAAAGAT+GGG + chr3_2:35170720-35170739 Msa0404330:CDS 40.0%
TGCTGCTATTGCCATGATAT+AGG + chr3_2:35170788-35170807 Msa0404330:CDS 40.0%
ATTCTCTAGGCACTCAAGAA+AGG - chr3_2:35170858-35170877 None:intergenic 40.0%
GCAAAATATGGCGATTCTCT+AGG - chr3_2:35170871-35170890 None:intergenic 40.0%
! CGCCATATTTTGCGTACTAA+AGG + chr3_2:35170878-35170897 Msa0404330:CDS 40.0%
TTGTAAAGATGAGCAACGTG+CGG - chr3_2:35170908-35170927 None:intergenic 40.0%
CTTACGAGATTCGTTCTGTA+AGG - chr3_2:35171083-35171102 None:intergenic 40.0%
GATCATTGATCCAGTTTGGA+TGG + chr3_2:35171120-35171139 Msa0404330:CDS 40.0%
AATTGCTTAGCCATCCAAAC+TGG - chr3_2:35171133-35171152 None:intergenic 40.0%
! GGCTAAGCAATTTGAAATGG+AGG + chr3_2:35171141-35171160 Msa0404330:CDS 40.0%
! GCAATTTGAAATGGAGGAGT+TGG + chr3_2:35171147-35171166 Msa0404330:CDS 40.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr3_2:35169605-35169624 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr3_2:35169893-35169912 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr3_2:35170253-35170272 Msa0404330:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr3_2:35170254-35170273 Msa0404330:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr3_2:35170266-35170285 Msa0404330:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr3_2:35170277-35170296 Msa0404330:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr3_2:35170288-35170307 Msa0404330:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr3_2:35170296-35170315 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr3_2:35170618-35170637 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr3_2:35170619-35170638 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr3_2:35170620-35170639 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr3_2:35170641-35170660 Msa0404330:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr3_2:35170642-35170661 Msa0404330:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr3_2:35170643-35170662 Msa0404330:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr3_2:35170710-35170729 Msa0404330:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr3_2:35170711-35170730 Msa0404330:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr3_2:35170721-35170740 Msa0404330:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr3_2:35170735-35170754 Msa0404330:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr3_2:35170736-35170755 Msa0404330:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr3_2:35170760-35170779 Msa0404330:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr3_2:35170907-35170926 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr3_2:35171095-35171114 Msa0404330:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr3_2:35171116-35171135 Msa0404330:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr3_2:35171289-35171308 None:intergenic 45.0%
! TGTGATTCTTGTGGTGGAGA+CGG - chr3_2:35169605-35169624 None:intergenic 45.0%
!! AAATTCCATGGCTCTGGACT+TGG - chr3_2:35169893-35169912 None:intergenic 45.0%
TTGTGGTGGCACAATGAACT+TGG + chr3_2:35170253-35170272 Msa0404330:exon 45.0%
TGTGGTGGCACAATGAACTT+GGG + chr3_2:35170254-35170273 Msa0404330:exon 45.0%
ATGAACTTGGGGTTTCTTGG+TGG + chr3_2:35170266-35170285 Msa0404330:CDS 45.0%
! GTTTCTTGGTGGCATACCTT+GGG + chr3_2:35170277-35170296 Msa0404330:CDS 45.0%
GCATACCTTGGGTTAAACCT+CGG + chr3_2:35170288-35170307 Msa0404330:CDS 45.0%
TTACTCCGAGGTTTAACCCA+AGG - chr3_2:35170296-35170315 None:intergenic 45.0%
ATAAGGCCTAAAGCGCAAAG+GGG - chr3_2:35170618-35170637 None:intergenic 45.0%
CATAAGGCCTAAAGCGCAAA+GGG - chr3_2:35170619-35170638 None:intergenic 45.0%
ACATAAGGCCTAAAGCGCAA+AGG - chr3_2:35170620-35170639 None:intergenic 45.0%
TGTAAGGTTCCATGGCATAC+AGG + chr3_2:35170641-35170660 Msa0404330:CDS 45.0%
GTAAGGTTCCATGGCATACA+GGG + chr3_2:35170642-35170661 Msa0404330:CDS 45.0%
TAAGGTTCCATGGCATACAG+GGG + chr3_2:35170643-35170662 Msa0404330:CDS 45.0%
TGTGGACCTAATTGGTCAAG+TGG + chr3_2:35170710-35170729 Msa0404330:CDS 45.0%
GTGGACCTAATTGGTCAAGT+GGG + chr3_2:35170711-35170730 Msa0404330:CDS 45.0%
TTGGTCAAGTGGGAAAGATG+GGG + chr3_2:35170721-35170740 Msa0404330:CDS 45.0%
AAGATGGGGGATCTCTTGTT+TGG + chr3_2:35170735-35170754 Msa0404330:CDS 45.0%
! AGATGGGGGATCTCTTGTTT+GGG + chr3_2:35170736-35170755 Msa0404330:CDS 45.0%
CAAGCGTCCAATTGATTGGT+TGG + chr3_2:35170760-35170779 Msa0404330:CDS 45.0%
TGTAAAGATGAGCAACGTGC+GGG - chr3_2:35170907-35170926 None:intergenic 45.0%
CTCGTAAGTCTACAACAGTC+AGG + chr3_2:35171095-35171114 Msa0404330:CDS 45.0%
GGACGATCATTGATCCAGTT+TGG + chr3_2:35171116-35171135 Msa0404330:CDS 45.0%
CAAGCTCATTATACACCCAC+AGG - chr3_2:35171289-35171308 None:intergenic 45.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr3_2:35169586-35169605 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr3_2:35169597-35169616 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr3_2:35170255-35170274 Msa0404330:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr3_2:35170276-35170295 Msa0404330:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr3_2:35170308-35170327 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr3_2:35170348-35170367 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr3_2:35170456-35170475 Msa0404330:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr3_2:35170722-35170741 Msa0404330:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr3_2:35170756-35170775 Msa0404330:CDS 50.0%
!! ACGGAAAGAGGGTCGATTTG+TGG - chr3_2:35169586-35169605 None:intergenic 50.0%
! TTGTGGTGGAGACGGAAAGA+GGG - chr3_2:35169597-35169616 None:intergenic 50.0%
GTGGTGGCACAATGAACTTG+GGG + chr3_2:35170255-35170274 Msa0404330:exon 50.0%
! GGTTTCTTGGTGGCATACCT+TGG + chr3_2:35170276-35170295 Msa0404330:CDS 50.0%
GCTGAATCTTGGTTACTCCG+AGG - chr3_2:35170308-35170327 None:intergenic 50.0%
GACTTGCGAAGTAAACGCAG+TGG - chr3_2:35170348-35170367 None:intergenic 50.0%
ATGATCCCAAGTTGTCAGGG+TGG + chr3_2:35170456-35170475 Msa0404330:CDS 50.0%
TGGTCAAGTGGGAAAGATGG+GGG + chr3_2:35170722-35170741 Msa0404330:CDS 50.0%
GGGACAAGCGTCCAATTGAT+TGG + chr3_2:35170756-35170775 Msa0404330:CDS 50.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr3_2:35169598-35169617 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr3_2:35169885-35169904 Msa0404330:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr3_2:35170464-35170483 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr3_2:35170609-35170628 Msa0404330:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr3_2:35170653-35170672 None:intergenic 55.0%
! CTTGTGGTGGAGACGGAAAG+AGG - chr3_2:35169598-35169617 None:intergenic 55.0%
TGGAACCAAGTCCAGAGCCA+TGG + chr3_2:35169885-35169904 Msa0404330:intron 55.0%
AAGGGCCACCCTGACAACTT+GGG - chr3_2:35170464-35170483 None:intergenic 55.0%
TGGCTACCCCTTTGCGCTTT+AGG + chr3_2:35170609-35170628 Msa0404330:CDS 55.0%
GCTCTAACCCCTGTATGCCA+TGG - chr3_2:35170653-35170672 None:intergenic 55.0%
CAAGGGCCACCCTGACAACT+TGG - chr3_2:35170465-35170484 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr3_2:35171393-35171412 Msa0404330:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr3_2:35171394-35171413 Msa0404330:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr3_2:35171403-35171422 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr3_2:35171404-35171423 None:intergenic 60.0%
CAAGGGCCACCCTGACAACT+TGG - chr3_2:35170465-35170484 None:intergenic 60.0%
CTTTCGACCCGTGTGACGCA+CGG + chr3_2:35171393-35171412 Msa0404330:three_prime_UTR 60.0%
TTTCGACCCGTGTGACGCAC+GGG + chr3_2:35171394-35171413 Msa0404330:three_prime_UTR 60.0%
ATAGGACCCGTGCGTCACAC+GGG - chr3_2:35171403-35171422 None:intergenic 60.0%
GATAGGACCCGTGCGTCACA+CGG - chr3_2:35171404-35171423 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 35169581 35171575 35169581 ID=Msa0404330;Name=Msa0404330
chr3_2 mRNA 35169581 35171575 35169581 ID=Msa0404330-mRNA-1;Parent=Msa0404330;Name=Msa0404330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=232|1|1|1|0.5|0.33|3|388|268
chr3_2 exon 35169581 35169780 35169581 ID=Msa0404330-mRNA-1:exon:7186;Parent=Msa0404330-mRNA-1
chr3_2 exon 35170234 35170944 35170234 ID=Msa0404330-mRNA-1:exon:7187;Parent=Msa0404330-mRNA-1
chr3_2 exon 35171060 35171575 35171060 ID=Msa0404330-mRNA-1:exon:7188;Parent=Msa0404330-mRNA-1
chr3_2 five_prime_UTR 35169581 35169780 35169581 ID=Msa0404330-mRNA-1:five_prime_utr;Parent=Msa0404330-mRNA-1
chr3_2 five_prime_UTR 35170234 35170265 35170234 ID=Msa0404330-mRNA-1:five_prime_utr;Parent=Msa0404330-mRNA-1
chr3_2 CDS 35170266 35170944 35170266 ID=Msa0404330-mRNA-1:cds;Parent=Msa0404330-mRNA-1
chr3_2 CDS 35171060 35171187 35171060 ID=Msa0404330-mRNA-1:cds;Parent=Msa0404330-mRNA-1
chr3_2 three_prime_UTR 35171188 35171575 35171188 ID=Msa0404330-mRNA-1:three_prime_utr;Parent=Msa0404330-mRNA-1
Gene Sequence

>Msa0404330

ATGAACTTGGGGTTTCTTGGTGGCATACCTTGGGTTAAACCTCGGAGTAACCAAGATTCAGCAATACATTTAGTTCAAACCACTGCGTTTACTTCGCAAGTCAAACATGAATCATCTGGTATTGATCCCAAATTTACTCCAGATTCAGCGACTCATTTAGTTCAAAAAGCACAACAAGAGTCATCTGTTAATGATCCCAAGTTGTCAGGGTGGCCCTTGTCCTTCCTTTCGTTATTTCCATGGACAAATAAAGATGGAGAAAAGTTTCAAAGACCAACTACGATCAATAAAGAGTTGAAGAGGCATGCACAAAATCGCGAAAACGTTGTTGGAAAAGATAATATGGCTACCCCTTTGCGCTTTAGGCCTTATGTTTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCACAGTTGTTTCCTAGATATGGACATTACTGTGGACCTAATTGGTCAAGTGGGAAAGATGGGGGATCTCTTGTTTGGGACAAGCGTCCAATTGATTGGTTGGATTACTGCTGCTATTGCCATGATATAGGATACGATACTCATGATCAAGCTAAACTGCTGAAAGCTGATTTAGCCTTTCTTGAGTGCCTAGAGAATCGCCATATTTTGCGTACTAAAGGAGACCCGCACGTTGCTCATCTTTACAAGACAATGTGCATTAATGGTCTTAAGAATTTTCTAATACCTTACAGAACGAATCTCGTAAGTCTACAACAGTCAGGACGATCATTGATCCAGTTTGGATGGCTAAGCAATTTGAAATGGAGGAGTTGGAATTACCAAAAAGAATGA

Protein sequence

>Msa0404330

MNLGFLGGIPWVKPRSNQDSAIHLVQTTAFTSQVKHESSGIDPKFTPDSATHLVQKAQQESSVNDPKLSGWPLSFLSLFPWTNKDGEKFQRPTTINKELKRHAQNRENVVGKDNMATPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDKRPIDWLDYCCYCHDIGYDTHDQAKLLKADLAFLECLENRHILRTKGDPHVAHLYKTMCINGLKNFLIPYRTNLVSLQQSGRSLIQFGWLSNLKWRSWNYQKE*