AlfalfaGEDB | Msa0636840

M. sativa cultivar zhongmu-4 / Msa0636840

KEGG: K02863
GO: GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00687.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0636840	XP_013442937.1	97.222	360	9	1	1	360	1	359	0.0	714

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0636840	sp\|Q9LY66\|RK1_ARATH	65.722	353	100	7	13	356	1	341	5.85e-157	447

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0636840	A0A072THS2	97.222	360	9	1	1	360	1	359	0.0	714

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0636840	0.830246	3.272156e-55	-8.615850e-47
Msa0000310	Msa0636840	0.813782	2.150471e-51	-8.615850e-47
Msa0000610	Msa0636840	0.828642	8.025524e-55	-8.615850e-47
Msa0001040	Msa0636840	0.859729	3.380667e-63	-8.615850e-47
Msa0001420	Msa0636840	0.838643	2.545177e-57	-8.615850e-47
Msa0001510	Msa0636840	0.800564	1.358638e-48	-8.615850e-47
Msa0001540	Msa0636840	0.811791	5.868245e-51	-8.615850e-47
Msa0002110	Msa0636840	0.806361	8.539073e-50	-8.615850e-47
Msa0002690	Msa0636840	0.862680	4.268558e-64	-8.615850e-47
Msa0002700	Msa0636840	0.865064	7.740147e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0636840	MtrunA17_Chr4g0020051	97.222	360	9	1	1	360	1	359	0.0	714
Msa0636840	MtrunA17_Chr4g0041341	40.278	216	122	2	144	352	227	442	1.05e-40	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0636840	AT3G63490.1	65.722	353	100	7	13	356	1	341	5.95e-158	447
Msa0636840	AT3G63490.2	59.259	297	97	8	13	300	1	282	2.18e-104	309
Msa0636840	AT2G42710.1	41.395	215	120	2	144	352	188	402	4.30e-50	173

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Find 120 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCAGGAGCAGATT+TGG	0.343136	4_3:+27971200	Msa0636840:CDS
AAAATAGCCGTTCTTACTCA+AGG	0.563803	4_3:+27969618	Msa0636840:CDS
AAATCCTCATCTTGGGCCAA+AGG	0.535268	4_3:-27972706	None:intergenic
AACAAACCATCTGGTGCGAA+AGG	0.572574	4_3:+27972427	Msa0636840:CDS
AACAAGGGGAGAGAGGAAGA+AGG	0.598366	4_3:-27966822	None:intergenic
AACACCTTAGGCATCATATC+TGG	0.401176	4_3:-27971291	None:intergenic
AACAGGGAAAAGTTGAATAC+AGG	0.442667	4_3:+27972223	Msa0636840:CDS
AACGGAGAGAAGAAGGAGAA+AGG	0.551129	4_3:-27966787	None:intergenic
AACTGTTGATCATTATATTT+AGG	0.131759	4_3:-27969449	None:intergenic
AACTGTTGATGAAGATGAGA+AGG	0.595375	4_3:+27966931	Msa0636840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTACTAAGCCTAAGAAA+GGG	+	chr4_3:27966993-27967012	Msa0636840:CDS	30.0%
ATTACTTCTCAAGAGTGATA+GGG	+	chr4_3:27967024-27967043	Msa0636840:CDS	30.0%
TTCAAATGAGTCATCTATTG+CGG	-	chr4_3:27967287-27967306	None:intergenic	30.0%
CAATTTATCGTTCGTAATTG+TGG	-	chr4_3:27967635-27967654	None:intergenic	30.0%
CACAATTACGAACGATAAAT+TGG	+	chr4_3:27967633-27967652	Msa0636840:intron	30.0%
ATCCAAATTCAGTGACTTTA+AGG	-	chr4_3:27967831-27967850	None:intergenic	30.0%
TTCTTAGAACCAGTGAATTT+AGG	+	chr4_3:27967963-27967982	Msa0636840:intron	30.0%
AGTGAATTTAGGAAGATGAA+GGG	+	chr4_3:27967974-27967993	Msa0636840:intron	30.0%
ACTTGGAAAAATTGTTCTGA+AGG	+	chr4_3:27968017-27968036	Msa0636840:intron	30.0%
ACCAGTAATAGAACAATTTG+TGG	-	chr4_3:27968358-27968377	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	27966607	27972925	27966607	ID=Msa0636840;Name=Msa0636840
chr4_3	mRNA	27966607	27972925	27966607	ID=Msa0636840-mRNA-1;Parent=Msa0636840;Name=Msa0636840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64\|1\|1\|1\|1\|1\|7\|379\|360
chr4_3	exon	27966607	27967045	27966607	ID=Msa0636840-mRNA-1:exon:6894;Parent=Msa0636840-mRNA-1
chr4_3	exon	27969302	27969481	27969302	ID=Msa0636840-mRNA-1:exon:6895;Parent=Msa0636840-mRNA-1
chr4_3	exon	27969585	27969639	27969585	ID=Msa0636840-mRNA-1:exon:6896;Parent=Msa0636840-mRNA-1
chr4_3	exon	27971181	27971308	27971181	ID=Msa0636840-mRNA-1:exon:6897;Parent=Msa0636840-mRNA-1
chr4_3	exon	27971979	27972062	27971979	ID=Msa0636840-mRNA-1:exon:6898;Parent=Msa0636840-mRNA-1
chr4_3	exon	27972207	27972332	27972207	ID=Msa0636840-mRNA-1:exon:6899;Parent=Msa0636840-mRNA-1
chr4_3	exon	27972412	27972925	27972412	ID=Msa0636840-mRNA-1:exon:6900;Parent=Msa0636840-mRNA-1
chr4_3	five_prime_UTR	27966607	27966670	27966607	ID=Msa0636840-mRNA-1:five_prime_utr;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27966671	27967045	27966671	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27969302	27969481	27969302	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27969585	27969639	27969585	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27971181	27971308	27971181	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27971979	27972062	27971979	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27972207	27972332	27972207	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	CDS	27972412	27972546	27972412	ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3	three_prime_UTR	27972547	27972925	27972547	ID=Msa0636840-mRNA-1:three_prime_utr;Parent=Msa0636840-mRNA-1

Gene Sequence

>Msa0636840

ATGTCCTGCTTTCACCACCACACTCTCTTCCCAAACATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTTGTTTTGAAGCCTACTAAGTCGGTTAACCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCCAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAAAATCAGTAGAGGCAAACAAACCATCTGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>Msa0636840

MSCFHHHTLFPNMASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTQFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE*