AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0636840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0636840 MtrunA17_Chr4g0020051 97.222 360 9 1 1 360 1 359 0.0 714
Msa0636840 MtrunA17_Chr4g0041341 40.278 216 122 2 144 352 227 442 1.05e-40 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0636840 AT3G63490.1 65.722 353 100 7 13 356 1 341 5.95e-158 447
Msa0636840 AT3G63490.2 59.259 297 97 8 13 300 1 282 2.18e-104 309
Msa0636840 AT2G42710.1 41.395 215 120 2 144 352 188 402 4.30e-50 173

Find 120 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 4_3:-27969449 None:intergenic
TGCTAGCCTTGGGAAGATTC+TGG 0.185149 4_3:+27971981 Msa0636840:CDS
TATTGATTTAGTCGGCTTTA+TGG 0.225054 4_3:+27972565 Msa0636840:three_prime_UTR
CTTCTACTGTTTCTACAAAC+TGG 0.231611 4_3:-27969403 None:intergenic
TACATATACAGGGATGAATT+TGG 0.275025 4_3:+27972631 Msa0636840:three_prime_UTR
GGAATCGTTCACTTGCCTTT+TGG 0.287837 4_3:+27972258 Msa0636840:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 4_3:-27969448 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 4_3:-27966816 None:intergenic
CTGAAACTATAGCCCGTTCT+TGG 0.303320 4_3:-27972902 None:intergenic
ATTGATTTAGTCGGCTTTAT+GGG 0.311429 4_3:+27972566 Msa0636840:three_prime_UTR
TTCATAATATTATCTATCTA+TGG 0.311835 4_3:+27972768 Msa0636840:three_prime_UTR
CTTGAAGACAGCAATTTCTT+TGG 0.313872 4_3:+27969361 Msa0636840:CDS
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 4_3:-27966780 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 4_3:+27967023 Msa0636840:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.343136 4_3:+27971200 Msa0636840:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 4_3:-27969427 None:intergenic
GCTAGCCTTGGGAAGATTCT+GGG 0.350205 4_3:+27971982 Msa0636840:CDS
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 4_3:-27972027 None:intergenic
CAGAATAGATCACTTGAATA+TGG 0.363358 4_3:+27972539 Msa0636840:exon
TTCGATGAAGCAAAACTTGC+AGG 0.364692 4_3:+27971189 Msa0636840:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 4_3:-27966781 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.370363 4_3:-27966815 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 4_3:+27969585 Msa0636840:CDS
TACAAGGAAAATCCTCATCT+TGG 0.380572 4_3:-27972714 None:intergenic
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 4_3:-27967004 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 4_3:+27969301 Msa0636840:intron
AGATAATATTATGAAATCTA+AGG 0.388876 4_3:-27972760 None:intergenic
CTATGTTGTGTGCACACTTT+TGG 0.391436 4_3:-27972682 None:intergenic
GGATTTGGCATGAGTCCTCT+TGG 0.392084 4_3:-27972006 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 4_3:-27971291 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 4_3:+27972206 Msa0636840:intron
GATCTGATAGAAGAGATAAA+AGG 0.407945 4_3:+27971234 Msa0636840:CDS
GTCACCAAGGTTACATATAC+AGG 0.412726 4_3:+27972620 Msa0636840:three_prime_UTR
GTTGTACATGAAGCCATGTT+TGG 0.414703 4_3:-27966701 None:intergenic
TGTTTCAGGTTGCTAGCCTT+GGG 0.425349 4_3:+27971971 Msa0636840:intron
CATACTAGTTCCCCTTGAAA+AGG 0.438137 4_3:-27972869 None:intergenic
AACAGGGAAAAGTTGAATAC+AGG 0.442667 4_3:+27972223 Msa0636840:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 4_3:+27972479 Msa0636840:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 4_3:+27972466 Msa0636840:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 4_3:+27971245 Msa0636840:CDS
TTGTTTCAGGTTGCTAGCCT+TGG 0.461467 4_3:+27971970 Msa0636840:intron
TTCTACTGTTTCTACAAACT+GGG 0.463133 4_3:-27969402 None:intergenic
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 4_3:-27969426 None:intergenic
TGTAGACCCGTGCCAAGAAC+GGG 0.465459 4_3:+27972890 Msa0636840:three_prime_UTR
ACAAGGAAAATCCTCATCTT+GGG 0.467492 4_3:-27972713 None:intergenic
GAATACAGGGCAGATAAAAC+AGG 0.473583 4_3:+27972237 Msa0636840:CDS
TATGGTTATATTGATTTAGT+CGG 0.475738 4_3:+27972557 Msa0636840:three_prime_UTR
TTCAGTCAGGTTAAATATCA+AGG 0.479582 4_3:+27972492 Msa0636840:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 4_3:+27966992 Msa0636840:CDS
AAGACCTAGACTGGTAGGTT+AGG 0.497972 4_3:-27966868 None:intergenic
GTGCACACAACATAGTCCTT+TGG 0.501143 4_3:+27972690 Msa0636840:three_prime_UTR
GAGAGTGTGGTGGTGAAAGC+AGG 0.504363 4_3:-27966675 None:intergenic
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 4_3:-27966794 None:intergenic
GTTAGGTTAACCGACTTAGT+AGG 0.508509 4_3:-27966851 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 4_3:-27966779 None:intergenic
TTGTACATGAAGCCATGTTT+GGG 0.512407 4_3:-27966700 None:intergenic
TGGTGAAAGCAGGACATTAG+AGG 0.518128 4_3:-27966665 None:intergenic
GTAGAGGCAAACAAACCATC+TGG 0.518230 4_3:+27972418 Msa0636840:CDS
GTTATCTATTCGTTTGCCGA+TGG 0.524222 4_3:-27966640 None:intergenic
TGCGCACATATGCTCAGCAA+TGG 0.525735 4_3:+27972465 Msa0636840:CDS
CTATAGCCCGTTCTTGGCAC+GGG 0.527454 4_3:-27972896 None:intergenic
TATACAGGGATGAATTTGGT+TGG 0.530059 4_3:+27972635 Msa0636840:three_prime_UTR
ACTTAGTAGGCTTCAAAACA+AGG 0.530096 4_3:-27966838 None:intergenic
ATACTAGTTCCCCTTGAAAA+GGG 0.532763 4_3:-27972868 None:intergenic
GTAAAATCGAAGACCTAGAC+TGG 0.533354 4_3:-27966877 None:intergenic
AAATCCTCATCTTGGGCCAA+AGG 0.535268 4_3:-27972706 None:intergenic
CTCATGCCAAATCCAAAAGC+TGG 0.536274 4_3:+27972015 Msa0636840:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 4_3:-27969436 None:intergenic
CTGGTGCGAAAGGTGTGTAC+TGG 0.541250 4_3:+27972437 Msa0636840:CDS
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 4_3:-27966778 None:intergenic
TGTAACAGCTAATATTCCTC+AGG 0.545912 4_3:+27972041 Msa0636840:CDS
CATCCCTGTATATGTAACCT+TGG 0.546222 4_3:-27972624 None:intergenic
TTAACCTAACCTACCAGTCT+AGG 0.550126 4_3:+27966864 Msa0636840:CDS
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 4_3:-27966787 None:intergenic
CTGATAGAAGAGATAAAAGG+AGG 0.556066 4_3:+27971237 Msa0636840:CDS
CCACACTCTCTTCCCAAACA+TGG 0.557526 4_3:+27966688 Msa0636840:CDS
CTAGCCTTGGGAAGATTCTG+GGG 0.560309 4_3:+27971983 Msa0636840:CDS
ACTATAGCCCGTTCTTGGCA+CGG 0.563081 4_3:-27972897 None:intergenic
AAAATAGCCGTTCTTACTCA+AGG 0.563803 4_3:+27969618 Msa0636840:CDS
AGCAGATTTGGTAGGTGGAG+AGG 0.564195 4_3:+27971212 Msa0636840:CDS
TACACACCTTTCGCACCAGA+TGG 0.564285 4_3:-27972433 None:intergenic
ATGTAGACCCGTGCCAAGAA+CGG 0.565981 4_3:+27972889 Msa0636840:three_prime_UTR
TTCTCCAGATATGATGCCTA+AGG 0.567948 4_3:+27971287 Msa0636840:CDS
TAGTCCTTTGGCCCAAGATG+AGG 0.571677 4_3:+27972702 Msa0636840:three_prime_UTR
AACAAACCATCTGGTGCGAA+AGG 0.572574 4_3:+27972427 Msa0636840:CDS
GAGAAGGATGGTGTTGATGA+TGG 0.575832 4_3:+27966947 Msa0636840:CDS
GCTTCAAAACAAGGGGAGAG+AGG 0.576331 4_3:-27966829 None:intergenic
ATTACTTCTCAAGAGTGATA+GGG 0.582083 4_3:+27967024 Msa0636840:CDS
ATAATCACCTTGAGTAAGAA+CGG 0.583105 4_3:-27969625 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 4_3:-27972490 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 4_3:+27966993 Msa0636840:CDS
GCAGGAGCAGATTTGGTAGG+TGG 0.594774 4_3:+27971207 Msa0636840:CDS
AACTGTTGATGAAGATGAGA+AGG 0.595375 4_3:+27966931 Msa0636840:CDS
CTTGCAGGAGCAGATTTGGT+AGG 0.596280 4_3:+27971204 Msa0636840:CDS
AACAAGGGGAGAGAGGAAGA+AGG 0.598366 4_3:-27966822 None:intergenic
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 4_3:-27966758 None:intergenic
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 4_3:+27969578 Msa0636840:intron
ACAGGGAAAAGTTGAATACA+GGG 0.604006 4_3:+27972224 Msa0636840:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 4_3:-27966873 None:intergenic
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 4_3:-27966757 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 4_3:-27966777 None:intergenic
TACAAAGTAATAATAATACA+AGG 0.623495 4_3:-27972730 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.625950 4_3:+27971991 Msa0636840:CDS
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 4_3:-27966805 None:intergenic
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 4_3:-27969433 None:intergenic
CCATGTTTGGGAAGAGAGTG+TGG 0.639849 4_3:-27966688 None:intergenic
TAATTTGCAGAAATCAGTAG+AGG 0.640381 4_3:+27972402 Msa0636840:intron
TTAGTAGGCTTCAAAACAAG+GGG 0.645924 4_3:-27966836 None:intergenic
CTTAGTAGGCTTCAAAACAA+GGG 0.652023 4_3:-27966837 None:intergenic
TTGGCCCCAGAATCTTCCCA+AGG 0.652840 4_3:-27971987 None:intergenic
AGCAACATCAGCAGTGACAG+CGG 0.657412 4_3:-27966906 None:intergenic
GTTGATGAAGATGAGAAGGA+TGG 0.658305 4_3:+27966935 Msa0636840:CDS
TGTACTCATTGCAATTGATG+TGG 0.660685 4_3:+27972836 Msa0636840:three_prime_UTR
TCACCAAGGTTACATATACA+GGG 0.668132 4_3:+27972621 Msa0636840:three_prime_UTR
CGCACATATGCTCAGCAATG+GGG 0.673772 4_3:+27972467 Msa0636840:CDS
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 4_3:+27969579 Msa0636840:intron
CTTGTCAAAAGATGTCACCA+AGG 0.694231 4_3:+27972607 Msa0636840:three_prime_UTR
TGAAAGCAGGACATTAGAGG+TGG 0.695588 4_3:-27966662 None:intergenic
GCTATAGCAGAATTCAAACA+GGG 0.697806 4_3:+27972207 Msa0636840:CDS
TGTTTGGGAAGAGAGTGTGG+TGG 0.778971 4_3:-27966685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTCATAAAATATACA+TGG + chr4_3:27968902-27968921 Msa0636840:intron 10.0%
!! CAATTATTCATAAAATAAAT+GGG - chr4_3:27969259-27969278 None:intergenic 10.0%
!! ACAATTATTCATAAAATAAA+TGG - chr4_3:27969260-27969279 None:intergenic 10.0%
!! CAATACATATAATTAAAAAA+GGG - chr4_3:27970348-27970367 None:intergenic 10.0%
!! ACAATACATATAATTAAAAA+AGG - chr4_3:27970349-27970368 None:intergenic 10.0%
!! ATTAGATTGAATATTAAATT+GGG + chr4_3:27970842-27970861 Msa0636840:intron 10.0%
!!! TGAATTTTAATAACTACAAT+TGG + chr4_3:27967098-27967117 Msa0636840:intron 15.0%
!!! GAATTTTAATAACTACAATT+GGG + chr4_3:27967099-27967118 Msa0636840:intron 15.0%
!!! AATTTTAATAACTACAATTG+GGG + chr4_3:27967100-27967119 Msa0636840:intron 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr4_3:27967340-27967359 None:intergenic 15.0%
!! TAACAAATTATCTAGAAAAT+TGG - chr4_3:27967691-27967710 None:intergenic 15.0%
!!! TTCTAGATAATTTGTTAAAA+AGG + chr4_3:27967694-27967713 Msa0636840:intron 15.0%
!!! ATTATTGAATTTTTCATGTT+TGG + chr4_3:27969222-27969241 Msa0636840:intron 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG + chr4_3:27969702-27969721 Msa0636840:intron 15.0%
!! ACAATCATGTTAAAAATATA+TGG - chr4_3:27970163-27970182 None:intergenic 15.0%
!! AAAAAAAAATAGTTAGAATG+AGG + chr4_3:27970486-27970505 Msa0636840:intron 15.0%
!! TAAAATAAAAAAATACAGCA+AGG - chr4_3:27970659-27970678 None:intergenic 15.0%
!! GATTAGATTGAATATTAAAT+TGG + chr4_3:27970841-27970860 Msa0636840:intron 15.0%
!! TAAAGTTAAACAATATAAAG+TGG + chr4_3:27970908-27970927 Msa0636840:intron 15.0%
!! TGAAATTAAATTTATCAACT+TGG - chr4_3:27971483-27971502 None:intergenic 15.0%
!! ATAATTATGACTATAATCAA+CGG - chr4_3:27971742-27971761 None:intergenic 15.0%
!!! TTATTATTTTTCCTTCTTTT+GGG + chr4_3:27971805-27971824 Msa0636840:intron 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG + chr4_3:27971918-27971937 Msa0636840:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG - chr4_3:27972151-27972170 None:intergenic 15.0%
!! TACAAAGTAATAATAATACA+AGG - chr4_3:27972733-27972752 None:intergenic 15.0%
!! AGATAATATTATGAAATCTA+AGG - chr4_3:27972763-27972782 None:intergenic 15.0%
!! TTCATAATATTATCTATCTA+TGG + chr4_3:27972768-27972787 Msa0636840:three_prime_UTR 15.0%
!! AAATATGGTCAAAGTAAATT+AGG - chr4_3:27967325-27967344 None:intergenic 20.0%
!! TTGAATATCAATTTGTGAAT+TGG + chr4_3:27967659-27967678 Msa0636840:intron 20.0%
!! TTATATGGTTTAAAAAGATC+CGG + chr4_3:27967732-27967751 Msa0636840:intron 20.0%
!!! CAATCGATGTAAATATTTTA+CGG + chr4_3:27968107-27968126 Msa0636840:intron 20.0%
!! AAATTATTGCATATAATGGT+AGG - chr4_3:27969090-27969109 None:intergenic 20.0%
!! ACTGTTGATCATTATATTTA+GGG - chr4_3:27969451-27969470 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG - chr4_3:27969452-27969471 None:intergenic 20.0%
!!! GAAAAAACATTTTCTTGTAA+AGG + chr4_3:27969701-27969720 Msa0636840:intron 20.0%
!! CAATTATGTAAACTCAATTA+TGG + chr4_3:27969747-27969766 Msa0636840:intron 20.0%
!!! TTAATATTTGTGCTGATAAA+AGG + chr4_3:27970084-27970103 Msa0636840:intron 20.0%
!! TTAACATGATTGTAATTACT+AGG + chr4_3:27970170-27970189 Msa0636840:intron 20.0%
!! AAATTAAAGGTAGATATTGT+AGG - chr4_3:27970257-27970276 None:intergenic 20.0%
!!! ACCTTTAATTTACTAACTAA+TGG + chr4_3:27970266-27970285 Msa0636840:intron 20.0%
!! ACCATTAGTTAGTAAATTAA+AGG - chr4_3:27970270-27970289 None:intergenic 20.0%
!! ATTCCAATTAACAAGTTATT+GGG - chr4_3:27970988-27971007 None:intergenic 20.0%
!! TATTCCAATTAACAAGTTAT+TGG - chr4_3:27970989-27971008 None:intergenic 20.0%
!!! TAACTTGTTAATTGGAATAT+TGG + chr4_3:27970990-27971009 Msa0636840:intron 20.0%
!!! TAATTTATAGTTCATTTTGC+AGG + chr4_3:27971159-27971178 Msa0636840:intron 20.0%
!!! GTTATTATTTTTCCTTCTTT+TGG + chr4_3:27971804-27971823 Msa0636840:intron 20.0%
!!! TATTATTTTTCCTTCTTTTG+GGG + chr4_3:27971806-27971825 Msa0636840:intron 20.0%
!! TTTAGCATTTATTATTTGGA+TGG + chr4_3:27971922-27971941 Msa0636840:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG - chr4_3:27972184-27972203 None:intergenic 20.0%
!!! TATGGTTATATTGATTTAGT+CGG + chr4_3:27972557-27972576 Msa0636840:three_prime_UTR 20.0%
!! ATTCATTTTCATATCACCAT+CGG + chr4_3:27966624-27966643 Msa0636840:five_prime_UTR 25.0%
! ATTAAGGGAATTAATTGTGT+TGG + chr4_3:27967164-27967183 Msa0636840:intron 25.0%
! TTAAGCTCAAAATTATGCAT+TGG + chr4_3:27967462-27967481 Msa0636840:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG + chr4_3:27967717-27967736 Msa0636840:intron 25.0%
! AATAGATAAGTCAATGAATC+CGG - chr4_3:27967754-27967773 None:intergenic 25.0%
!! TCTTTTGTCTTACTTTAAAC+TGG - chr4_3:27967854-27967873 None:intergenic 25.0%
! CGTAAAATATTTACATCGAT+TGG - chr4_3:27968109-27968128 None:intergenic 25.0%
!! GTTTTCACACAAATTATCTA+GGG + chr4_3:27968301-27968320 Msa0636840:intron 25.0%
!!! TATTAGTTGATGCTACATTT+TGG + chr4_3:27968463-27968482 Msa0636840:intron 25.0%
! AAGATATAGTGAGAAATTGT+TGG + chr4_3:27968619-27968638 Msa0636840:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG - chr4_3:27968748-27968767 None:intergenic 25.0%
! TGAAGGAAAAAAAAATTCAC+TGG + chr4_3:27968841-27968860 Msa0636840:intron 25.0%
! AAATTTCAGAAGATATTGGA+AGG - chr4_3:27969016-27969035 None:intergenic 25.0%
! TGCTAAATTTCAGAAGATAT+TGG - chr4_3:27969020-27969039 None:intergenic 25.0%
! AGCGAAATTATTGCATATAA+TGG - chr4_3:27969094-27969113 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG + chr4_3:27969094-27969113 Msa0636840:intron 25.0%
! TGATCTTAGAAAGAAACAAA+TGG - chr4_3:27969188-27969207 None:intergenic 25.0%
! TCTTGGAAATTCAAAAATTG+AGG + chr4_3:27969318-27969337 Msa0636840:CDS 25.0%
! CTTGGAAATTCAAAAATTGA+GGG + chr4_3:27969319-27969338 Msa0636840:CDS 25.0%
! TATGTAAACTCAATTATGGA+TGG + chr4_3:27969751-27969770 Msa0636840:intron 25.0%
! AATAGTTAATACACAACCAT+AGG - chr4_3:27970024-27970043 None:intergenic 25.0%
! AGCACAAATATTAAGAAACT+CGG - chr4_3:27970078-27970097 None:intergenic 25.0%
!! TTTTCGATTTCAATTTTCGT+AGG - chr4_3:27970131-27970150 None:intergenic 25.0%
! ATCATAACAAATCAAGAGTT+TGG - chr4_3:27970231-27970250 None:intergenic 25.0%
!!! CTAACTTTAGAATGTAATGT+GGG - chr4_3:27970301-27970320 None:intergenic 25.0%
!!! ACTAACTTTAGAATGTAATG+TGG - chr4_3:27970302-27970321 None:intergenic 25.0%
! AAAAAATAGTTAGAATGAGG+AGG + chr4_3:27970489-27970508 Msa0636840:intron 25.0%
! GTTAAACAATATAAAGTGGA+CGG + chr4_3:27970912-27970931 Msa0636840:intron 25.0%
! TTAAACAATATAAAGTGGAC+GGG + chr4_3:27970913-27970932 Msa0636840:intron 25.0%
! TTAACTTATCTATGATGTCT+AGG - chr4_3:27970945-27970964 None:intergenic 25.0%
! AGACATCATAGATAAGTTAA+TGG + chr4_3:27970945-27970964 Msa0636840:intron 25.0%
! GACATCATAGATAAGTTAAT+GGG + chr4_3:27970946-27970965 Msa0636840:intron 25.0%
! TTCCAATTAACAAGTTATTG+GGG - chr4_3:27970987-27971006 None:intergenic 25.0%
! TTATTAAGCAGTGATTCAAT+TGG - chr4_3:27971102-27971121 None:intergenic 25.0%
! GAAGGAAAAATAATAACCTA+AGG - chr4_3:27971801-27971820 None:intergenic 25.0%
!!! ATTATTTTTCCTTCTTTTGG+GGG + chr4_3:27971807-27971826 Msa0636840:intron 25.0%
! AATGCTAAAAACAACATGAT+GGG - chr4_3:27971911-27971930 None:intergenic 25.0%
! AAATGCTAAAAACAACATGA+TGG - chr4_3:27971912-27971931 None:intergenic 25.0%
!! GATTGCATAATTCTTTTTAC+AGG + chr4_3:27972185-27972204 Msa0636840:intron 25.0%
! CAGATAGAAAATTCAATTTG+GGG - chr4_3:27972346-27972365 None:intergenic 25.0%
! GCAGATAGAAAATTCAATTT+GGG - chr4_3:27972347-27972366 None:intergenic 25.0%
! TGCAGATAGAAAATTCAATT+TGG - chr4_3:27972348-27972367 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG - chr4_3:27972395-27972414 None:intergenic 25.0%
! ATTTCTGCAAATTAGAACAA+TGG - chr4_3:27972396-27972415 None:intergenic 25.0%
!! ACATCTTTTGACAAGATATT+TGG - chr4_3:27972602-27972621 None:intergenic 25.0%
! CTCACTATTAATAGCAAAAA+TGG - chr4_3:27972804-27972823 None:intergenic 25.0%
!!! CATTTTTGCTATTAATAGTG+AGG + chr4_3:27972802-27972821 Msa0636840:three_prime_UTR 25.0%
TTACTACTAAGCCTAAGAAA+GGG + chr4_3:27966993-27967012 Msa0636840:CDS 30.0%
ATTACTTCTCAAGAGTGATA+GGG + chr4_3:27967024-27967043 Msa0636840:CDS 30.0%
TTCAAATGAGTCATCTATTG+CGG - chr4_3:27967287-27967306 None:intergenic 30.0%
CAATTTATCGTTCGTAATTG+TGG - chr4_3:27967635-27967654 None:intergenic 30.0%
CACAATTACGAACGATAAAT+TGG + chr4_3:27967633-27967652 Msa0636840:intron 30.0%
ATCCAAATTCAGTGACTTTA+AGG - chr4_3:27967831-27967850 None:intergenic 30.0%
TTCTTAGAACCAGTGAATTT+AGG + chr4_3:27967963-27967982 Msa0636840:intron 30.0%
AGTGAATTTAGGAAGATGAA+GGG + chr4_3:27967974-27967993 Msa0636840:intron 30.0%
ACTTGGAAAAATTGTTCTGA+AGG + chr4_3:27968017-27968036 Msa0636840:intron 30.0%
! ACGTGATTTTCAATTCTCTT+CGG - chr4_3:27968274-27968293 None:intergenic 30.0%
! GGTTTTCACACAAATTATCT+AGG + chr4_3:27968300-27968319 Msa0636840:intron 30.0%
ACCAGTAATAGAACAATTTG+TGG - chr4_3:27968358-27968377 None:intergenic 30.0%
AAATTGTTCTATTACTGGTG+TGG + chr4_3:27968359-27968378 Msa0636840:intron 30.0%
AATTGTTCTATTACTGGTGT+GGG + chr4_3:27968360-27968379 Msa0636840:intron 30.0%
TAACGATTAACATCTCATGT+AGG + chr4_3:27968795-27968814 Msa0636840:intron 30.0%
AACGATTAACATCTCATGTA+GGG + chr4_3:27968796-27968815 Msa0636840:intron 30.0%
GGTTCACGTATTTATGTTAT+AGG + chr4_3:27968862-27968881 Msa0636840:intron 30.0%
!! CTAAGATCAAGTTGATTGTT+TGG + chr4_3:27969199-27969218 Msa0636840:intron 30.0%
!! TTCTACTGTTTCTACAAACT+GGG - chr4_3:27969405-27969424 None:intergenic 30.0%
! TATATTTAGGGTCAATGTTG+AGG - chr4_3:27969439-27969458 None:intergenic 30.0%
TTCATCCATCTTCTCTTAAT+AGG + chr4_3:27969563-27969582 Msa0636840:intron 30.0%
ACTTACCTATTAAGAGAAGA+TGG - chr4_3:27969571-27969590 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG - chr4_3:27969615-27969634 None:intergenic 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG - chr4_3:27969616-27969635 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG - chr4_3:27969628-27969647 None:intergenic 30.0%
ATAACAAATCAAGAGTTTGG+AGG - chr4_3:27970228-27970247 None:intergenic 30.0%
TAGAACCTACTCAAAATTCA+AGG - chr4_3:27970455-27970474 None:intergenic 30.0%
! TGGAATTGGCATGTTATTTA+TGG + chr4_3:27970568-27970587 Msa0636840:intron 30.0%
TGATATTCCTCATCAAAACA+TGG + chr4_3:27970868-27970887 Msa0636840:intron 30.0%
ATCATAGATAAGTTAATGGG+TGG + chr4_3:27970949-27970968 Msa0636840:intron 30.0%
TTGTTAATTGGAATATTGGC+TGG + chr4_3:27970994-27971013 Msa0636840:intron 30.0%
TTCGCTTATCTTATTCCTAT+CGG - chr4_3:27971034-27971053 None:intergenic 30.0%
GTTGTACAAAGTAAAATGGT+AGG - chr4_3:27971071-27971090 None:intergenic 30.0%
! ACCATTTTACTTTGTACAAC+TGG + chr4_3:27971071-27971090 Msa0636840:intron 30.0%
! CCATTTTACTTTGTACAACT+GGG + chr4_3:27971072-27971091 Msa0636840:intron 30.0%
CTATTTATTGTGCATCTCTT+TGG + chr4_3:27971130-27971149 Msa0636840:intron 30.0%
GATCTGATAGAAGAGATAAA+AGG + chr4_3:27971234-27971253 Msa0636840:CDS 30.0%
AAGATTCGAAAGTTAGTAAC+TGG + chr4_3:27971406-27971425 Msa0636840:intron 30.0%
ATTTATCCTCAACACACATT+AGG - chr4_3:27971457-27971476 None:intergenic 30.0%
GTTCTATGTTCATTCAAATC+AGG + chr4_3:27971514-27971533 Msa0636840:intron 30.0%
TTCATTCAAATCAGGTTCTT+TGG + chr4_3:27971522-27971541 Msa0636840:intron 30.0%
ATTGTCAATACAGTTTCCTT+AGG + chr4_3:27971782-27971801 Msa0636840:intron 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG - chr4_3:27972289-27972308 None:intergenic 30.0%
! TAATTTGCAGAAATCAGTAG+AGG + chr4_3:27972402-27972421 Msa0636840:intron 30.0%
TTGATATTTAACCTGACTGA+AGG - chr4_3:27972493-27972512 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG + chr4_3:27972492-27972511 Msa0636840:CDS 30.0%
CAGAATAGATCACTTGAATA+TGG + chr4_3:27972539-27972558 Msa0636840:exon 30.0%
!! TATTGATTTAGTCGGCTTTA+TGG + chr4_3:27972565-27972584 Msa0636840:three_prime_UTR 30.0%
! ATTGATTTAGTCGGCTTTAT+GGG + chr4_3:27972566-27972585 Msa0636840:three_prime_UTR 30.0%
TACATATACAGGGATGAATT+TGG + chr4_3:27972631-27972650 Msa0636840:three_prime_UTR 30.0%
TTGTACATGAAGCCATGTTT+GGG - chr4_3:27966703-27966722 None:intergenic 35.0%
TTAGTAGGCTTCAAAACAAG+GGG - chr4_3:27966839-27966858 None:intergenic 35.0%
CTTAGTAGGCTTCAAAACAA+GGG - chr4_3:27966840-27966859 None:intergenic 35.0%
ACTTAGTAGGCTTCAAAACA+AGG - chr4_3:27966841-27966860 None:intergenic 35.0%
!!! TGTTTTGAAGCCTACTAAGT+CGG + chr4_3:27966841-27966860 Msa0636840:CDS 35.0%
! AACTGTTGATGAAGATGAGA+AGG + chr4_3:27966931-27966950 Msa0636840:CDS 35.0%
GTTACTACTAAGCCTAAGAA+AGG + chr4_3:27966992-27967011 Msa0636840:CDS 35.0%
CATTACTTCTCAAGAGTGAT+AGG + chr4_3:27967023-27967042 Msa0636840:CDS 35.0%
AATAACTACAATTGGGGTTC+TGG + chr4_3:27967106-27967125 Msa0636840:intron 35.0%
AAGGGAATTAATTGTGTTGG+TGG + chr4_3:27967167-27967186 Msa0636840:intron 35.0%
! AGGGAATTAATTGTGTTGGT+GGG + chr4_3:27967168-27967187 Msa0636840:intron 35.0%
TCAAATGAGTCATCTATTGC+GGG - chr4_3:27967286-27967305 None:intergenic 35.0%
GTCAACTGTGTCATGTATTA+TGG + chr4_3:27967498-27967517 Msa0636840:intron 35.0%
CTGTGTCATGTATTATGGAA+CGG + chr4_3:27967503-27967522 Msa0636840:intron 35.0%
!! AAATTCAGTGACTTTAAGGC+CGG - chr4_3:27967827-27967846 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG + chr4_3:27967885-27967904 Msa0636840:intron 35.0%
! ATCTCTTTTCCAATTGCGAT+CGG + chr4_3:27967920-27967939 Msa0636840:intron 35.0%
CTTCATCTTCCTAAATTCAC+TGG - chr4_3:27967975-27967994 None:intergenic 35.0%
CAGTGAATTTAGGAAGATGA+AGG + chr4_3:27967973-27967992 Msa0636840:intron 35.0%
GTGAATTTAGGAAGATGAAG+GGG + chr4_3:27967975-27967994 Msa0636840:intron 35.0%
! CGATGTAAATATTTTACGGC+AGG + chr4_3:27968111-27968130 Msa0636840:intron 35.0%
!! TACCAAGGATTGGTTACATT+GGG - chr4_3:27968223-27968242 None:intergenic 35.0%
TTTCAATTCTCTTCGGTATG+TGG - chr4_3:27968267-27968286 None:intergenic 35.0%
AATTGAAAATCACGTGACTG+TGG + chr4_3:27968279-27968298 Msa0636840:intron 35.0%
GTAATAGAACAATTTGTGGC+CGG - chr4_3:27968354-27968373 None:intergenic 35.0%
GCCACAAATTGTTCTATTAC+TGG + chr4_3:27968354-27968373 Msa0636840:intron 35.0%
TCTAAAGATACCGAATCAGT+TGG - chr4_3:27968388-27968407 None:intergenic 35.0%
!! ACTGATTCGGTATCTTTAGA+TGG + chr4_3:27968388-27968407 Msa0636840:intron 35.0%
ACGATTAACATCTCATGTAG+GGG + chr4_3:27968797-27968816 Msa0636840:intron 35.0%
!!! TTCCTTCATCACCACTTTTT+AGG - chr4_3:27968829-27968848 None:intergenic 35.0%
TTATGTTATAGGAGCTTCAG+AGG + chr4_3:27968873-27968892 Msa0636840:intron 35.0%
TTATAGCCAGACTTTCTCTT+TGG + chr4_3:27968958-27968977 Msa0636840:intron 35.0%
! TCTGAAATTTAGCATGAGTG+AGG + chr4_3:27969026-27969045 Msa0636840:intron 35.0%
CTGAAATTTAGCATGAGTGA+GGG + chr4_3:27969027-27969046 Msa0636840:intron 35.0%
ATGCAATAATTTCGCTTGGT+TGG + chr4_3:27969098-27969117 Msa0636840:intron 35.0%
AAGTAGGCAATCAAATATGC+TGG - chr4_3:27969134-27969153 None:intergenic 35.0%
AGCATATTTGATTGCCTACT+TGG + chr4_3:27969133-27969152 Msa0636840:intron 35.0%
CTTGAAGACAGCAATTTCTT+TGG + chr4_3:27969361-27969380 Msa0636840:CDS 35.0%
!! CTTCTACTGTTTCTACAAAC+TGG - chr4_3:27969406-27969425 None:intergenic 35.0%
AAAATAGCCGTTCTTACTCA+AGG + chr4_3:27969618-27969637 Msa0636840:CDS 35.0%
TGTAAAGGGATGTGTATGAA+AGG + chr4_3:27969716-27969735 Msa0636840:intron 35.0%
AACTCAATTATGGATGGACA+TGG + chr4_3:27969757-27969776 Msa0636840:intron 35.0%
ACGATTATATATGCATGCAG+TGG - chr4_3:27969861-27969880 None:intergenic 35.0%
AAGTAGATGTACTTGGTTCA+TGG - chr4_3:27969934-27969953 None:intergenic 35.0%
! GAACCAAGTACATCTACTTT+TGG + chr4_3:27969935-27969954 Msa0636840:intron 35.0%
CTACCAAAAGTAGATGTACT+TGG - chr4_3:27969941-27969960 None:intergenic 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG + chr4_3:27969946-27969965 Msa0636840:intron 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG + chr4_3:27969947-27969966 Msa0636840:intron 35.0%
CATGATTGTAATTACTAGGC+TGG + chr4_3:27970174-27970193 Msa0636840:intron 35.0%
! TGGTTCCAAACTCTTTTTGA+AGG + chr4_3:27970194-27970213 Msa0636840:intron 35.0%
! GGTTCCAAACTCTTTTTGAA+GGG + chr4_3:27970195-27970214 Msa0636840:intron 35.0%
!! AAGTTAGTTGCTCACTTTTG+AGG + chr4_3:27970314-27970333 Msa0636840:intron 35.0%
AATGAGGAGGCAAACTATTA+TGG + chr4_3:27970502-27970521 Msa0636840:intron 35.0%
! TTTTATCCCCAAGTCTATTG+TGG + chr4_3:27970548-27970567 Msa0636840:intron 35.0%
AAAATTATCCGCCAAAGAGA+AGG - chr4_3:27970703-27970722 None:intergenic 35.0%
! TTGAAAGTCTAGTTTGAGCT+TGG + chr4_3:27970781-27970800 Msa0636840:intron 35.0%
! TGAAAGTCTAGTTTGAGCTT+GGG + chr4_3:27970782-27970801 Msa0636840:intron 35.0%
!! CACCCCAATAACTTGTTAAT+TGG + chr4_3:27970982-27971001 Msa0636840:intron 35.0%
! GTTCTTAACAGTTTTCCGAT+AGG + chr4_3:27971016-27971035 Msa0636840:intron 35.0%
CCCAGTTGTACAAAGTAAAA+TGG - chr4_3:27971075-27971094 None:intergenic 35.0%
CTGATAGAAGAGATAAAAGG+AGG + chr4_3:27971237-27971256 Msa0636840:CDS 35.0%
AGAGATAAAAGGAGGATACA+TGG + chr4_3:27971245-27971264 Msa0636840:CDS 35.0%
AAGATATTGAGCAACACCTT+AGG - chr4_3:27971306-27971325 None:intergenic 35.0%
! AGGAGAACATGATTTGCAAA+TGG - chr4_3:27971437-27971456 None:intergenic 35.0%
GTTGCAGATTTCAGCTATAA+AGG - chr4_3:27971586-27971605 None:intergenic 35.0%
AATCAGTTGTTACTAGCATG+CGG + chr4_3:27971688-27971707 Msa0636840:intron 35.0%
TATTTGGATGGAAACTCAGT+TGG + chr4_3:27971934-27971953 Msa0636840:intron 35.0%
TGTAACAGCTAATATTCCTC+AGG + chr4_3:27972041-27972060 Msa0636840:CDS 35.0%
GCTATAGCAGAATTCAAACA+GGG + chr4_3:27972207-27972226 Msa0636840:CDS 35.0%
AACAGGGAAAAGTTGAATAC+AGG + chr4_3:27972223-27972242 Msa0636840:CDS 35.0%
ACAGGGAAAAGTTGAATACA+GGG + chr4_3:27972224-27972243 Msa0636840:CDS 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG - chr4_3:27972276-27972295 None:intergenic 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG + chr4_3:27972281-27972300 Msa0636840:CDS 35.0%
TCACCAAGGTTACATATACA+GGG + chr4_3:27972621-27972640 Msa0636840:three_prime_UTR 35.0%
TATACAGGGATGAATTTGGT+TGG + chr4_3:27972635-27972654 Msa0636840:three_prime_UTR 35.0%
ACAAGGAAAATCCTCATCTT+GGG - chr4_3:27972716-27972735 None:intergenic 35.0%
TACAAGGAAAATCCTCATCT+TGG - chr4_3:27972717-27972736 None:intergenic 35.0%
TGTACTCATTGCAATTGATG+TGG + chr4_3:27972836-27972855 Msa0636840:three_prime_UTR 35.0%
ATACTAGTTCCCCTTGAAAA+GGG - chr4_3:27972871-27972890 None:intergenic 35.0%
GTTATCTATTCGTTTGCCGA+TGG - chr4_3:27966643-27966662 None:intergenic 40.0%
GTTGTACATGAAGCCATGTT+TGG - chr4_3:27966704-27966723 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG - chr4_3:27966783-27966802 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG - chr4_3:27966808-27966827 None:intergenic 40.0%
! GTTAGGTTAACCGACTTAGT+AGG - chr4_3:27966854-27966873 None:intergenic 40.0%
TTAACCTAACCTACCAGTCT+AGG + chr4_3:27966864-27966883 Msa0636840:CDS 40.0%
GTAAAATCGAAGACCTAGAC+TGG - chr4_3:27966880-27966899 None:intergenic 40.0%
! GTTGATGAAGATGAGAAGGA+TGG + chr4_3:27966935-27966954 Msa0636840:CDS 40.0%
AATGCAGCTTTCCCTTTCTT+AGG - chr4_3:27967007-27967026 None:intergenic 40.0%
TGTCATGTATTATGGAACGG+AGG + chr4_3:27967506-27967525 Msa0636840:intron 40.0%
GTCATGTATTATGGAACGGA+GGG + chr4_3:27967507-27967526 Msa0636840:intron 40.0%
GTAAGTACACTGTCAAACAG+TGG + chr4_3:27967551-27967570 Msa0636840:intron 40.0%
TGTCAAACAGTGGTATGTGT+CGG + chr4_3:27967561-27967580 Msa0636840:intron 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG + chr4_3:27967593-27967612 Msa0636840:intron 40.0%
CTGAAGTCACCTTGAATTAC+CGG + chr4_3:27967805-27967824 Msa0636840:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG - chr4_3:27967817-27967836 None:intergenic 40.0%
GGCCTTAAAGTCACTGAATT+TGG + chr4_3:27967826-27967845 Msa0636840:intron 40.0%
! GGTTACATTGGGGGTATAAT+CGG - chr4_3:27968212-27968231 None:intergenic 40.0%
!! ACCAAGGATTGGTTACATTG+GGG - chr4_3:27968222-27968241 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG - chr4_3:27968224-27968243 None:intergenic 40.0%
CAATGTAACCAATCCTTGGT+AGG + chr4_3:27968222-27968241 Msa0636840:intron 40.0%
ATTCTCTTCGGTATGTGGTA+CGG - chr4_3:27968262-27968281 None:intergenic 40.0%
! GATTCGGTATCTTTAGATGG+AGG + chr4_3:27968391-27968410 Msa0636840:intron 40.0%
GCTACAAGGTTAGGTATAAG+TGG - chr4_3:27968424-27968443 None:intergenic 40.0%
TAACCTTGTAGCTGTGTTGT+GGG + chr4_3:27968432-27968451 Msa0636840:intron 40.0%
! ACCTGAGAATTTTCACGTAC+AGG + chr4_3:27968534-27968553 Msa0636840:intron 40.0%
TCCTGTACGTGAAAATTCTC+AGG - chr4_3:27968538-27968557 None:intergenic 40.0%
CAGTAGCTAACGACTACAAA+TGG + chr4_3:27968652-27968671 Msa0636840:intron 40.0%
! TTTTGTGCTCACTGCTCATT+TGG + chr4_3:27968707-27968726 Msa0636840:intron 40.0%
! CTCCTAAAAAGTGGTGATGA+AGG + chr4_3:27968824-27968843 Msa0636840:intron 40.0%
TTTCCACCAAAGAGAAAGTC+TGG - chr4_3:27968967-27968986 None:intergenic 40.0%
ATTGCCTACTTGGATAGTGA+TGG + chr4_3:27969143-27969162 Msa0636840:intron 40.0%
TACACCATCACTATCCAAGT+AGG - chr4_3:27969150-27969169 None:intergenic 40.0%
TGTTATCACCATGTTTCACC+AGG + chr4_3:27969280-27969299 Msa0636840:intron 40.0%
AGAATCTCTTAGATCTCACC+TGG - chr4_3:27969301-27969320 None:intergenic 40.0%
GGTGAGATCTAAGAGATTCT+TGG + chr4_3:27969301-27969320 Msa0636840:intron 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG - chr4_3:27969436-27969455 None:intergenic 40.0%
GAGAAGATGGATGAAAGACT+CGG - chr4_3:27969558-27969577 None:intergenic 40.0%
TTAATAGGTAAGTCTGCCGA+AGG + chr4_3:27969578-27969597 Msa0636840:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG + chr4_3:27969579-27969598 Msa0636840:intron 40.0%
GGACATGGACATAAGATGAT+AGG + chr4_3:27969772-27969791 Msa0636840:intron 40.0%
! ATAGGTCTTTTCTCCTGAAG+TGG + chr4_3:27969790-27969809 Msa0636840:intron 40.0%
CTTCGTGTGTGGATAACTAT+GGG + chr4_3:27969986-27970005 Msa0636840:intron 40.0%
ACTCGGTTGTTATGCACAAA+TGG - chr4_3:27970061-27970080 None:intergenic 40.0%
CTTGCCCTTCAAAAAGAGTT+TGG - chr4_3:27970202-27970221 None:intergenic 40.0%
!! CAAACTCTTTTTGAAGGGCA+AGG + chr4_3:27970200-27970219 Msa0636840:intron 40.0%
!! ACGCACCTTGAATTTTGAGT+AGG + chr4_3:27970447-27970466 Msa0636840:intron 40.0%
AGGAGGCAAACTATTATGGA+GGG + chr4_3:27970506-27970525 Msa0636840:intron 40.0%
CCAATTCCACAATAGACTTG+GGG - chr4_3:27970557-27970576 None:intergenic 40.0%
GCCAATTCCACAATAGACTT+GGG - chr4_3:27970558-27970577 None:intergenic 40.0%
TGCCAATTCCACAATAGACT+TGG - chr4_3:27970559-27970578 None:intergenic 40.0%
GTCCTTAAATGCCAAGTAAC+TGG + chr4_3:27970629-27970648 Msa0636840:intron 40.0%
GTCCAGTTACTTGGCATTTA+AGG - chr4_3:27970634-27970653 None:intergenic 40.0%
AGAGAAGGATCAAAGGAACA+GGG - chr4_3:27970688-27970707 None:intergenic 40.0%
AAGAGAAGGATCAAAGGAAC+AGG - chr4_3:27970689-27970708 None:intergenic 40.0%
GTTCCTTTGATCCTTCTCTT+TGG + chr4_3:27970689-27970708 Msa0636840:intron 40.0%
AAAACATGGACGATGGTTGA+TGG + chr4_3:27970882-27970901 Msa0636840:intron 40.0%
TTCGATGAAGCAAAACTTGC+AGG + chr4_3:27971189-27971208 Msa0636840:CDS 40.0%
AAAACTTGCAGGAGCAGATT+TGG + chr4_3:27971200-27971219 Msa0636840:CDS 40.0%
TTCTCCAGATATGATGCCTA+AGG + chr4_3:27971287-27971306 Msa0636840:CDS 40.0%
AACACCTTAGGCATCATATC+TGG - chr4_3:27971294-27971313 None:intergenic 40.0%
TGTTCTCCTAATGTGTGTTG+AGG + chr4_3:27971448-27971467 Msa0636840:intron 40.0%
TGATGCTATGCTCAGATTCA+TGG + chr4_3:27971623-27971642 Msa0636840:intron 40.0%
ATACAGGGACCAATGAGTTA+TGG + chr4_3:27971884-27971903 Msa0636840:intron 40.0%
TACAGGGACCAATGAGTTAT+GGG + chr4_3:27971885-27971904 Msa0636840:intron 40.0%
TTGCCATCGATGATTGTTTC+AGG + chr4_3:27971957-27971976 Msa0636840:intron 40.0%
CAACCTGAAACAATCATCGA+TGG - chr4_3:27971963-27971982 None:intergenic 40.0%
ACACACACATACACATAGAG+AGG + chr4_3:27972124-27972143 Msa0636840:intron 40.0%
GGCTATAGCAGAATTCAAAC+AGG + chr4_3:27972206-27972225 Msa0636840:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG + chr4_3:27972237-27972256 Msa0636840:CDS 40.0%
CTTGTCAAAAGATGTCACCA+AGG + chr4_3:27972607-27972626 Msa0636840:three_prime_UTR 40.0%
GTCACCAAGGTTACATATAC+AGG + chr4_3:27972620-27972639 Msa0636840:three_prime_UTR 40.0%
CATCCCTGTATATGTAACCT+TGG - chr4_3:27972627-27972646 None:intergenic 40.0%
! CTATGTTGTGTGCACACTTT+TGG - chr4_3:27972685-27972704 None:intergenic 40.0%
! GCGCAATATACCCTTTTCAA+GGG + chr4_3:27972858-27972877 Msa0636840:three_prime_UTR 40.0%
!! CGCAATATACCCTTTTCAAG+GGG + chr4_3:27972859-27972878 Msa0636840:three_prime_UTR 40.0%
CATACTAGTTCCCCTTGAAA+AGG - chr4_3:27972872-27972891 None:intergenic 40.0%
TGAAAGCAGGACATTAGAGG+TGG - chr4_3:27966665-27966684 None:intergenic 45.0%
TGGTGAAAGCAGGACATTAG+AGG - chr4_3:27966668-27966687 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG - chr4_3:27966760-27966779 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG - chr4_3:27966761-27966780 None:intergenic 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG - chr4_3:27966781-27966800 None:intergenic 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG - chr4_3:27966782-27966801 None:intergenic 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG - chr4_3:27966784-27966803 None:intergenic 45.0%
AACGGAGAGAAGAAGGAGAA+AGG - chr4_3:27966790-27966809 None:intergenic 45.0%
GGAAAAGAACGGAGAGAAGA+AGG - chr4_3:27966797-27966816 None:intergenic 45.0%
AAGACCTAGACTGGTAGGTT+AGG - chr4_3:27966871-27966890 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG - chr4_3:27966876-27966895 None:intergenic 45.0%
!! GAGAAGGATGGTGTTGATGA+TGG + chr4_3:27966947-27966966 Msa0636840:CDS 45.0%
!! CAATTGGGGTTCTGGTTTCA+TGG + chr4_3:27967114-27967133 Msa0636840:intron 45.0%
GTTCGCGACTATGCTTCATA+TGG - chr4_3:27967199-27967218 None:intergenic 45.0%
ATGAGTCATCTATTGCGGGA+CGG - chr4_3:27967282-27967301 None:intergenic 45.0%
! ATGCATTGGCATGCGTAATG+AGG + chr4_3:27967476-27967495 Msa0636840:intron 45.0%
CACGTCGTCAATCAAAAGTG+TGG + chr4_3:27967592-27967611 Msa0636840:intron 45.0%
TTTCCAATTGCGATCGGAAG+TGG + chr4_3:27967926-27967945 Msa0636840:intron 45.0%
ATTCCACTTCCGATCGCAAT+TGG - chr4_3:27967932-27967951 None:intergenic 45.0%
!! CCAAGGATTGGTTACATTGG+GGG - chr4_3:27968221-27968240 None:intergenic 45.0%
TTCTCTTCGGTATGTGGTAC+GGG - chr4_3:27968261-27968280 None:intergenic 45.0%
CACAACACAGCTACAAGGTT+AGG - chr4_3:27968433-27968452 None:intergenic 45.0%
CTAACCTTGTAGCTGTGTTG+TGG + chr4_3:27968431-27968450 Msa0636840:intron 45.0%
ATACCCACAACACAGCTACA+AGG - chr4_3:27968438-27968457 None:intergenic 45.0%
GTAGTCGTTAGCTACTGAAG+AGG - chr4_3:27968649-27968668 None:intergenic 45.0%
AGGGGAGAACTCCTAAAAAG+TGG + chr4_3:27968815-27968834 Msa0636840:intron 45.0%
TAGCCAGACTTTCTCTTTGG+TGG + chr4_3:27968961-27968980 Msa0636840:intron 45.0%
AGATCTCACCTGGTGAAACA+TGG - chr4_3:27969291-27969310 None:intergenic 45.0%
GTCAATGTTGAGGCGGAAAT+GGG - chr4_3:27969429-27969448 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG - chr4_3:27969493-27969512 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG - chr4_3:27969597-27969616 None:intergenic 45.0%
AACGCAATGTCTACCACTTC+AGG - chr4_3:27969806-27969825 None:intergenic 45.0%
!! TTGTCCTGGCATTGACATAG+AGG + chr4_3:27969824-27969843 Msa0636840:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG + chr4_3:27969953-27969972 Msa0636840:intron 45.0%
GAATTGAACTGCTTCGTGTG+TGG + chr4_3:27969975-27969994 Msa0636840:intron 45.0%
GCTTCGTGTGTGGATAACTA+TGG + chr4_3:27969985-27970004 Msa0636840:intron 45.0%
! TGGGTTCATTGAGTTGCCTA+TGG + chr4_3:27970005-27970024 Msa0636840:intron 45.0%
GAGGAGGCAAACTATTATGG+AGG + chr4_3:27970505-27970524 Msa0636840:intron 45.0%
GCAAACTATTATGGAGGGTG+AGG + chr4_3:27970511-27970530 Msa0636840:intron 45.0%
CCCCAAGTCTATTGTGGAAT+TGG + chr4_3:27970554-27970573 Msa0636840:intron 45.0%
CCTTTGATCCTTCTCTTTGG+CGG + chr4_3:27970692-27970711 Msa0636840:intron 45.0%
!!! CCATCGTCCATGTTTTGATG+AGG - chr4_3:27970878-27970897 None:intergenic 45.0%
CCTCATCAAAACATGGACGA+TGG + chr4_3:27970875-27970894 Msa0636840:intron 45.0%
! ATGCTTAGTCTTCGCTTGCA+TGG + chr4_3:27971560-27971579 Msa0636840:intron 45.0%
! GAGCATAGCATCAAGTATCG+TGG - chr4_3:27971616-27971635 None:intergenic 45.0%
ACAGAGAATCCCCCAAAAGA+AGG - chr4_3:27971819-27971838 None:intergenic 45.0%
!! ATGATGGGCCCATAACTCAT+TGG - chr4_3:27971896-27971915 None:intergenic 45.0%
!! TTGTTTCAGGTTGCTAGCCT+TGG + chr4_3:27971970-27971989 Msa0636840:intron 45.0%
!! TGTTTCAGGTTGCTAGCCTT+GGG + chr4_3:27971971-27971990 Msa0636840:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG + chr4_3:27972015-27972034 Msa0636840:CDS 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG - chr4_3:27972024-27972043 None:intergenic 45.0%
AGTAGTTGATTGTGCACCTG+AGG - chr4_3:27972060-27972079 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG + chr4_3:27972258-27972277 Msa0636840:CDS 45.0%
GTAGAGGCAAACAAACCATC+TGG + chr4_3:27972418-27972437 Msa0636840:CDS 45.0%
AACAAACCATCTGGTGCGAA+AGG + chr4_3:27972427-27972446 Msa0636840:CDS 45.0%
GTGCACACAACATAGTCCTT+TGG + chr4_3:27972690-27972709 Msa0636840:three_prime_UTR 45.0%
AAATCCTCATCTTGGGCCAA+AGG - chr4_3:27972709-27972728 None:intergenic 45.0%
! GGCGCAATATACCCTTTTCA+AGG + chr4_3:27972857-27972876 Msa0636840:three_prime_UTR 45.0%
CTGAAACTATAGCCCGTTCT+TGG - chr4_3:27972905-27972924 None:intergenic 45.0%
!! ATTATTAGTATTTATTATTA+AGG + chr4_3:27967148-27967167 Msa0636840:intron 5.0%
!! TTATTAGTATTTATTATTAA+GGG + chr4_3:27967149-27967168 Msa0636840:intron 5.0%
! TGTTTGGGAAGAGAGTGTGG+TGG - chr4_3:27966688-27966707 None:intergenic 50.0%
CCATGTTTGGGAAGAGAGTG+TGG - chr4_3:27966691-27966710 None:intergenic 50.0%
CCACACTCTCTTCCCAAACA+TGG + chr4_3:27966688-27966707 Msa0636840:CDS 50.0%
GGGGGTGAGAATAGAAGAAG+AGG - chr4_3:27966762-27966781 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG - chr4_3:27966780-27966799 None:intergenic 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG - chr4_3:27966818-27966837 None:intergenic 50.0%
AACAAGGGGAGAGAGGAAGA+AGG - chr4_3:27966825-27966844 None:intergenic 50.0%
GCTTCAAAACAAGGGGAGAG+AGG - chr4_3:27966832-27966851 None:intergenic 50.0%
AGCAACATCAGCAGTGACAG+CGG - chr4_3:27966909-27966928 None:intergenic 50.0%
GCGATCGGAAGTGGAATGAT+TGG + chr4_3:27967935-27967954 Msa0636840:intron 50.0%
CCCCCAATGTAACCAATCCT+TGG + chr4_3:27968218-27968237 Msa0636840:intron 50.0%
TATACGGTTGCTGCCTACCA+AGG - chr4_3:27968238-27968257 None:intergenic 50.0%
CGGTATGTGGTACGGGTATA+CGG - chr4_3:27968254-27968273 None:intergenic 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG + chr4_3:27968324-27968343 Msa0636840:intron 50.0%
GGTGTGGGTACCAACTGATT+CGG + chr4_3:27968375-27968394 Msa0636840:intron 50.0%
GGTCAATGTTGAGGCGGAAA+TGG - chr4_3:27969430-27969449 None:intergenic 50.0%
TGGTAGACATTGCGTTGTCC+TGG + chr4_3:27969810-27969829 Msa0636840:intron 50.0%
ACGTCCTCTATGTCAATGCC+AGG - chr4_3:27969831-27969850 None:intergenic 50.0%
AGCAAGGCTGTCCAGTTACT+TGG - chr4_3:27970643-27970662 None:intergenic 50.0%
CCGCCAAAGAGAAGGATCAA+AGG - chr4_3:27970695-27970714 None:intergenic 50.0%
! CTTGCAGGAGCAGATTTGGT+AGG + chr4_3:27971204-27971223 Msa0636840:CDS 50.0%
! AGCAGATTTGGTAGGTGGAG+AGG + chr4_3:27971212-27971231 Msa0636840:CDS 50.0%
ACATCAGAGCGTGACGATAC+AGG + chr4_3:27971868-27971887 Msa0636840:intron 50.0%
CATCAGAGCGTGACGATACA+GGG + chr4_3:27971869-27971888 Msa0636840:intron 50.0%
!! TGCTAGCCTTGGGAAGATTC+TGG + chr4_3:27971981-27972000 Msa0636840:CDS 50.0%
!! GCTAGCCTTGGGAAGATTCT+GGG + chr4_3:27971982-27972001 Msa0636840:CDS 50.0%
!! CTAGCCTTGGGAAGATTCTG+GGG + chr4_3:27971983-27972002 Msa0636840:CDS 50.0%
GGATTTGGCATGAGTCCTCT+TGG - chr4_3:27972009-27972028 None:intergenic 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG - chr4_3:27972030-27972049 None:intergenic 50.0%
TACACACCTTTCGCACCAGA+TGG - chr4_3:27972436-27972455 None:intergenic 50.0%
TGCGCACATATGCTCAGCAA+TGG + chr4_3:27972465-27972484 Msa0636840:CDS 50.0%
GCGCACATATGCTCAGCAAT+GGG + chr4_3:27972466-27972485 Msa0636840:CDS 50.0%
CGCACATATGCTCAGCAATG+GGG + chr4_3:27972467-27972486 Msa0636840:CDS 50.0%
TAGTCCTTTGGCCCAAGATG+AGG + chr4_3:27972702-27972721 Msa0636840:three_prime_UTR 50.0%
ATGTAGACCCGTGCCAAGAA+CGG + chr4_3:27972889-27972908 Msa0636840:three_prime_UTR 50.0%
ACTATAGCCCGTTCTTGGCA+CGG - chr4_3:27972900-27972919 None:intergenic 50.0%
! GAGAGTGTGGTGGTGAAAGC+AGG - chr4_3:27966678-27966697 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG - chr4_3:27966819-27966838 None:intergenic 55.0%
GTCATCTATTGCGGGACGGA+GGG - chr4_3:27967278-27967297 None:intergenic 55.0%
AGTCATCTATTGCGGGACGG+AGG - chr4_3:27967279-27967298 None:intergenic 55.0%
GAAGGGGTTCATCGTTCACG+CGG + chr4_3:27967991-27968010 Msa0636840:intron 55.0%
AAGGGGTTCATCGTTCACGC+GGG + chr4_3:27967992-27968011 Msa0636840:intron 55.0%
GGTTGCTGCCTACCAAGGAT+TGG - chr4_3:27968233-27968252 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG + chr4_3:27968318-27968337 Msa0636840:intron 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG + chr4_3:27968323-27968342 Msa0636840:intron 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG + chr4_3:27969585-27969604 Msa0636840:CDS 55.0%
! GCAGGAGCAGATTTGGTAGG+TGG + chr4_3:27971207-27971226 Msa0636840:CDS 55.0%
TTGGCCCCAGAATCTTCCCA+AGG - chr4_3:27971990-27972009 None:intergenic 55.0%
! CTGGTGCGAAAGGTGTGTAC+TGG + chr4_3:27972437-27972456 Msa0636840:CDS 55.0%
TGTAGACCCGTGCCAAGAAC+GGG + chr4_3:27972890-27972909 Msa0636840:three_prime_UTR 55.0%
CTATAGCCCGTTCTTGGCAC+GGG - chr4_3:27972899-27972918 None:intergenic 55.0%
CATCGTTCACGCGGGAGACT+TGG + chr4_3:27968000-27968019 Msa0636840:intron 60.0%
GCCAAGAGGTGAGGGAACTC+CGG + chr4_3:27968332-27968351 Msa0636840:intron 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG + chr4_3:27971991-27972010 Msa0636840:CDS 60.0%
CAGCAATGGGGCCTTCAGTC+AGG + chr4_3:27972479-27972498 Msa0636840:CDS 60.0%
GCCGGAGTTCCCTCACCTCT+TGG - chr4_3:27968336-27968355 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 27966607 27972925 27966607 ID=Msa0636840;Name=Msa0636840
chr4_3 mRNA 27966607 27972925 27966607 ID=Msa0636840-mRNA-1;Parent=Msa0636840;Name=Msa0636840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|7|379|360
chr4_3 exon 27966607 27967045 27966607 ID=Msa0636840-mRNA-1:exon:6894;Parent=Msa0636840-mRNA-1
chr4_3 exon 27969302 27969481 27969302 ID=Msa0636840-mRNA-1:exon:6895;Parent=Msa0636840-mRNA-1
chr4_3 exon 27969585 27969639 27969585 ID=Msa0636840-mRNA-1:exon:6896;Parent=Msa0636840-mRNA-1
chr4_3 exon 27971181 27971308 27971181 ID=Msa0636840-mRNA-1:exon:6897;Parent=Msa0636840-mRNA-1
chr4_3 exon 27971979 27972062 27971979 ID=Msa0636840-mRNA-1:exon:6898;Parent=Msa0636840-mRNA-1
chr4_3 exon 27972207 27972332 27972207 ID=Msa0636840-mRNA-1:exon:6899;Parent=Msa0636840-mRNA-1
chr4_3 exon 27972412 27972925 27972412 ID=Msa0636840-mRNA-1:exon:6900;Parent=Msa0636840-mRNA-1
chr4_3 five_prime_UTR 27966607 27966670 27966607 ID=Msa0636840-mRNA-1:five_prime_utr;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27966671 27967045 27966671 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27969302 27969481 27969302 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27969585 27969639 27969585 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27971181 27971308 27971181 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27971979 27972062 27971979 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27972207 27972332 27972207 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 CDS 27972412 27972546 27972412 ID=Msa0636840-mRNA-1:cds;Parent=Msa0636840-mRNA-1
chr4_3 three_prime_UTR 27972547 27972925 27972547 ID=Msa0636840-mRNA-1:three_prime_utr;Parent=Msa0636840-mRNA-1
Gene Sequence

>Msa0636840

ATGTCCTGCTTTCACCACCACACTCTCTTCCCAAACATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTTGTTTTGAAGCCTACTAAGTCGGTTAACCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCCAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAAAATCAGTAGAGGCAAACAAACCATCTGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>Msa0636840

MSCFHHHTLFPNMASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTQFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE*