AlfalfaGEDB | Msa0931090

M. sativa cultivar zhongmu-4 / Msa0931090

KEGG: K02710|K02712
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02533.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931090	RDY14692.1	90.722	97	9	0	1	97	4	100	7.75e-56	178

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931090	sp\|Q49L15\|PSBK_EUCGG	91.667	60	5	0	1	60	1	60	1.80e-32	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028610	Msa0931090	0.805015	1.636780e-49	-8.615850e-47
Msa0035090	Msa0931090	0.841780	3.861469e-58	-8.615850e-47
Msa0039200	Msa0931090	0.803885	2.815003e-49	-8.615850e-47
Msa0040190	Msa0931090	0.834364	3.127585e-56	-8.615850e-47
Msa0057740	Msa0931090	0.804596	2.002118e-49	-8.615850e-47
Msa0065190	Msa0931090	0.805695	1.179269e-49	-8.615850e-47
Msa0065390	Msa0931090	0.808040	3.765224e-50	-8.615850e-47
Msa0083570	Msa0931090	0.812377	4.372382e-51	-8.615850e-47
Msa0086820	Msa0931090	0.801996	6.916047e-49	-8.615850e-47
Msa0087880	Msa0931090	0.805899	1.068429e-49	-8.615850e-47
Msa0092750	Msa0931090	0.842459	2.552369e-58	-8.615850e-47
Msa0094420	Msa0931090	0.821271	4.412445e-53	-8.615850e-47
Msa0095140	Msa0931090	0.874487	6.498026e-68	-8.615850e-47
Msa0095200	Msa0931090	0.888549	5.349514e-73	-8.615850e-47
Msa0095240	Msa0931090	0.842584	2.365437e-58	-8.615850e-47
Msa0095270	Msa0931090	0.865953	4.061414e-65	-8.615850e-47
Msa0096230	Msa0931090	0.803446	3.472909e-49	-8.615850e-47
Msa0099830	Msa0931090	0.823200	1.574177e-53	-8.615850e-47
Msa0103060	Msa0931090	0.800258	1.568367e-48	-8.615850e-47
Msa0110710	Msa0931090	0.807812	4.208860e-50	-8.615850e-47
Msa0606140	Msa0931090	0.821179	4.633167e-53	-8.615850e-47
Msa0619060	Msa0931090	0.806198	9.241049e-50	-8.615850e-47
Msa0624240	Msa0931090	0.827025	1.964852e-54	-8.615850e-47
Msa0635350	Msa0931090	0.803279	3.760791e-49	-8.615850e-47
Msa0640880	Msa0931090	0.805582	1.245354e-49	-8.615850e-47
Msa0647110	Msa0931090	0.824733	6.877014e-54	-8.615850e-47
Msa0653710	Msa0931090	0.807046	6.120057e-50	-8.615850e-47
Msa0654060	Msa0931090	0.800321	1.522818e-48	-8.615850e-47
Msa0659640	Msa0931090	0.804357	2.245702e-49	-8.615850e-47
Msa0672350	Msa0931090	0.806279	8.884315e-50	-8.615850e-47
Msa0681040	Msa0931090	0.804356	2.247087e-49	-8.615850e-47
Msa0681890	Msa0931090	0.803367	3.606101e-49	-8.615850e-47
Msa0698900	Msa0931090	0.802275	6.060184e-49	-8.615850e-47
Msa0702070	Msa0931090	0.809354	1.972198e-50	-8.615850e-47
Msa0702120	Msa0931090	0.802976	4.344015e-49	-8.615850e-47
Msa0704750	Msa0931090	0.828918	6.881104e-55	-8.615850e-47
Msa0705030	Msa0931090	0.800436	1.442251e-48	-8.615850e-47
Msa0705610	Msa0931090	0.804036	2.619769e-49	-8.615850e-47
Msa0706710	Msa0931090	0.801806	7.568483e-49	-8.615850e-47
Msa0708120	Msa0931090	0.803509	3.369596e-49	-8.615850e-47
Msa0716670	Msa0931090	0.811929	5.475628e-51	-8.615850e-47
Msa0719340	Msa0931090	0.801422	9.073255e-49	-8.615850e-47
Msa0727020	Msa0931090	0.862388	5.249536e-64	-8.615850e-47
Msa0736330	Msa0931090	0.814293	1.658916e-51	-8.615850e-47
Msa0736930	Msa0931090	0.812511	4.086463e-51	-8.615850e-47
Msa0739570	Msa0931090	0.820126	8.087013e-53	-8.615850e-47
Msa0766880	Msa0931090	0.845339	4.320085e-59	-8.615850e-47
Msa0772150	Msa0931090	0.800592	1.340732e-48	-8.615850e-47
Msa0772210	Msa0931090	0.837800	4.196028e-57	-8.615850e-47
Msa0778060	Msa0931090	0.809737	1.632417e-50	-8.615850e-47
Msa0782330	Msa0931090	0.824978	6.022806e-54	-8.615850e-47
Msa0786090	Msa0931090	0.809776	1.600641e-50	-8.615850e-47
Msa0804930	Msa0931090	0.832950	7.053378e-56	-8.615850e-47
Msa0819470	Msa0931090	0.812059	5.129902e-51	-8.615850e-47
Msa0821490	Msa0931090	0.823311	1.482790e-53	-8.615850e-47
Msa0123940	Msa0931090	0.818894	1.544702e-52	-8.615850e-47
Msa0130120	Msa0931090	0.828372	9.328170e-55	-8.615850e-47
Msa0133670	Msa0931090	0.805214	1.487067e-49	-8.615850e-47
Msa0133880	Msa0931090	0.808051	3.744077e-50	-8.615850e-47
Msa0134550	Msa0931090	0.838213	3.285682e-57	-8.615850e-47
Msa0139740	Msa0931090	0.815012	1.149639e-51	-8.615850e-47
Msa0141670	Msa0931090	0.817397	3.367945e-52	-8.615850e-47
Msa0156780	Msa0931090	0.817375	3.406899e-52	-8.615850e-47
Msa0175900	Msa0931090	0.846085	2.710223e-59	-8.615850e-47
Msa0184120	Msa0931090	0.808600	2.859674e-50	-8.615850e-47
Msa0186750	Msa0931090	0.815200	1.044203e-51	-8.615850e-47
Msa0189050	Msa0931090	0.801853	7.401885e-49	-8.615850e-47
Msa0202630	Msa0931090	0.800280	1.551886e-48	-8.615850e-47
Msa0216010	Msa0931090	0.819802	9.593053e-53	-8.615850e-47
Msa0216560	Msa0931090	0.804769	1.842941e-49	-8.615850e-47
Msa0221860	Msa0931090	0.830521	2.802261e-55	-8.615850e-47
Msa0222070	Msa0931090	0.824842	6.482837e-54	-8.615850e-47
Msa0222120	Msa0931090	0.823158	1.610503e-53	-8.615850e-47
Msa0224960	Msa0931090	0.804930	1.704981e-49	-8.615850e-47
Msa0225010	Msa0931090	0.812272	4.609485e-51	-8.615850e-47
Msa0227290	Msa0931090	0.829618	4.655134e-55	-8.615850e-47
Msa0231310	Msa0931090	0.805833	1.103086e-49	-8.615850e-47
Msa0370510	Msa0931090	0.802198	6.285109e-49	-8.615850e-47
Msa0377460	Msa0931090	0.819818	9.511653e-53	-8.615850e-47
Msa0417630	Msa0931090	0.810066	1.386707e-50	-8.615850e-47
Msa0421800	Msa0931090	0.802139	6.465631e-49	-8.615850e-47
Msa0423110	Msa0931090	0.803756	2.994869e-49	-8.615850e-47
Msa0426860	Msa0931090	0.827744	1.320909e-54	-8.615850e-47
Msa0426890	Msa0931090	0.824794	6.653664e-54	-8.615850e-47
Msa0427050	Msa0931090	0.818055	2.393126e-52	-8.615850e-47
Msa0434630	Msa0931090	0.802759	4.817582e-49	-8.615850e-47
Msa0449930	Msa0931090	0.812756	3.612910e-51	-8.615850e-47
Msa0464500	Msa0931090	0.814244	1.700728e-51	-8.615850e-47
Msa0473450	Msa0931090	0.823626	1.251804e-53	-8.615850e-47
Msa0482020	Msa0931090	0.823008	1.745388e-53	-8.615850e-47
Msa0253410	Msa0931090	0.802675	5.014162e-49	-8.615850e-47
Msa0256170	Msa0931090	0.801011	1.101048e-48	-8.615850e-47
Msa0263620	Msa0931090	0.822872	1.877494e-53	-8.615850e-47
Msa0268180	Msa0931090	0.919846	2.698680e-87	-8.615850e-47
Msa0268220	Msa0931090	0.841496	4.587087e-58	-8.615850e-47
Msa0268340	Msa0931090	0.847435	1.158932e-59	-8.615850e-47
Msa0268380	Msa0931090	0.898329	5.905276e-77	-8.615850e-47
Msa0268420	Msa0931090	0.932985	3.734763e-95	-8.615850e-47
Msa0268460	Msa0931090	0.838785	2.338841e-57	-8.615850e-47
Msa0268500	Msa0931090	0.855325	6.806365e-62	-8.615850e-47
Msa0268540	Msa0931090	0.935645	6.119008e-97	-8.615850e-47
Msa0268650	Msa0931090	0.923600	2.145350e-89	-8.615850e-47
Msa0268680	Msa0931090	0.810476	1.131201e-50	-8.615850e-47
Msa0268690	Msa0931090	0.827528	1.488521e-54	-8.615850e-47
Msa0268730	Msa0931090	0.876452	1.380962e-68	-8.615850e-47
Msa0268760	Msa0931090	0.831955	1.244571e-55	-8.615850e-47
Msa0268850	Msa0931090	0.907685	3.877458e-81	-8.615850e-47
Msa0268900	Msa0931090	0.838868	2.226664e-57	-8.615850e-47
Msa0268930	Msa0931090	0.888221	7.154614e-73	-8.615850e-47
Msa0269060	Msa0931090	0.908268	2.059028e-81	-8.615850e-47
Msa0269100	Msa0931090	0.841587	4.340432e-58	-8.615850e-47
Msa0274690	Msa0931090	0.801243	9.872319e-49	-8.615850e-47
Msa0284260	Msa0931090	0.802514	5.410369e-49	-8.615850e-47
Msa0301460	Msa0931090	0.819617	1.056945e-52	-8.615850e-47
Msa0301800	Msa0931090	0.817279	3.580357e-52	-8.615850e-47
Msa0304870	Msa0931090	0.810855	9.363743e-51	-8.615850e-47
Msa0306130	Msa0931090	0.832684	8.213159e-56	-8.615850e-47
Msa0307490	Msa0931090	0.832330	1.005284e-55	-8.615850e-47
Msa0309160	Msa0931090	0.802959	4.380026e-49	-8.615850e-47
Msa0317630	Msa0931090	0.808200	3.480831e-50	-8.615850e-47
Msa0324060	Msa0931090	0.801383	9.240259e-49	-8.615850e-47
Msa0341260	Msa0931090	0.810144	1.333703e-50	-8.615850e-47
Msa0344200	Msa0931090	0.860600	1.844991e-63	-8.615850e-47
Msa0344250	Msa0931090	0.848830	4.773446e-60	-8.615850e-47
Msa0344290	Msa0931090	0.823459	1.369268e-53	-8.615850e-47
Msa0487560	Msa0931090	0.804949	1.689726e-49	-8.615850e-47
Msa0487620	Msa0931090	0.802076	6.661421e-49	-8.615850e-47
Msa0514260	Msa0931090	0.801959	7.039743e-49	-8.615850e-47
Msa0517400	Msa0931090	0.815964	7.056400e-52	-8.615850e-47
Msa0530210	Msa0931090	0.803038	4.217430e-49	-8.615850e-47
Msa0536170	Msa0931090	0.806183	9.307798e-50	-8.615850e-47
Msa0540340	Msa0931090	0.819524	1.110068e-52	-8.615850e-47
Msa0547050	Msa0931090	0.801656	8.124573e-49	-8.615850e-47
Msa0550720	Msa0931090	0.818023	2.432885e-52	-8.615850e-47
Msa0558890	Msa0931090	0.823264	1.520955e-53	-8.615850e-47
Msa0571070	Msa0931090	0.803451	3.464520e-49	-8.615850e-47
Msa0577140	Msa0931090	0.829485	5.013370e-55	-8.615850e-47
Msa0577870	Msa0931090	0.801407	9.136097e-49	-8.615850e-47
Msa0577910	Msa0931090	0.800994	1.109942e-48	-8.615850e-47
Msa0582530	Msa0931090	0.898071	7.592619e-77	-8.615850e-47
Msa0582570	Msa0931090	0.841179	5.557686e-58	-8.615850e-47
Msa0582580	Msa0931090	0.856384	3.336215e-62	-8.615850e-47
Msa0582620	Msa0931090	0.867281	1.535797e-65	-8.615850e-47
Msa0582660	Msa0931090	0.800405	1.463982e-48	-8.615850e-47
Msa0582710	Msa0931090	0.916670	1.346486e-85	-8.615850e-47
Msa0582740	Msa0931090	0.889471	2.352147e-73	-8.615850e-47
Msa0582830	Msa0931090	0.909216	7.277964e-82	-8.615850e-47
Msa0582900	Msa0931090	0.858262	9.293977e-63	-8.615850e-47
Msa0582930	Msa0931090	0.820956	5.215744e-53	-8.615850e-47
Msa0586890	Msa0931090	0.800013	1.758720e-48	-8.615850e-47
Msa0591370	Msa0931090	0.823751	1.169822e-53	-8.615850e-47
Msa0595780	Msa0931090	0.832625	8.497006e-56	-8.615850e-47
Msa0596080	Msa0931090	0.804521	2.076228e-49	-8.615850e-47
Msa0601780	Msa0931090	0.805693	1.180166e-49	-8.615850e-47
Msa0851870	Msa0931090	0.806006	1.014298e-49	-8.615850e-47
Msa0855490	Msa0931090	0.841193	5.513605e-58	-8.615850e-47
Msa0859390	Msa0931090	0.801593	8.370418e-49	-8.615850e-47
Msa0860270	Msa0931090	0.826809	2.212618e-54	-8.615850e-47
Msa0900320	Msa0931090	0.826491	2.635015e-54	-8.615850e-47
Msa0910650	Msa0931090	0.818072	2.372382e-52	-8.615850e-47
Msa0924820	Msa0931090	0.813143	2.970681e-51	-8.615850e-47
Msa0924860	Msa0931090	0.851172	1.055280e-60	-8.615850e-47
Msa0924890	Msa0931090	0.835185	1.943510e-56	-8.615850e-47
Msa0925020	Msa0931090	0.840899	6.584081e-58	-8.615850e-47
Msa0931090	Msa0931150	0.930754	1.032619e-93	-8.615850e-47
Msa0931090	Msa0931200	0.841728	3.983850e-58	-8.615850e-47
Msa0931090	Msa0931280	0.898484	5.070925e-77	-8.615850e-47
Msa0931090	Msa0945560	0.802025	6.824339e-49	-8.615850e-47
Msa0931090	Msa0959970	0.806067	9.848682e-50	-8.615850e-47
Msa0931090	Msa0978000	0.807855	4.122454e-50	-8.615850e-47
Msa0931090	Msa0983670	0.832785	7.751217e-56	-8.615850e-47
Msa0931090	Msa0983710	0.851996	6.164798e-61	-8.615850e-47
Msa0931090	Msa0992570	0.835845	1.323956e-56	-8.615850e-47
Msa0931090	Msa0992590	0.836513	8.953105e-57	-8.615850e-47
Msa0931090	Msa1002040	0.826988	2.005579e-54	-8.615850e-47
Msa0931090	Msa1024580	0.821040	4.986491e-53	-8.615850e-47
Msa0931090	Msa1030280	0.838057	3.603999e-57	-8.615850e-47
Msa0931090	Msa1040770	0.804481	2.116026e-49	-8.615850e-47
Msa0931090	Msa1044040	0.800816	1.206702e-48	-8.615850e-47
Msa0931090	Msa1049440	0.825112	5.598662e-54	-8.615850e-47
Msa0931090	Msa1063180	0.804668	1.933914e-49	-8.615850e-47
Msa0931090	Msa1070900	0.824846	6.468263e-54	-8.615850e-47
Msa0931090	Msa1079610	0.810002	1.431169e-50	-8.615850e-47
Msa0931090	Msa1086020	0.863977	1.692637e-64	-8.615850e-47
Msa0931090	Msa1086060	0.894232	2.992161e-75	-8.615850e-47
Msa0931090	Msa1086160	0.901150	3.583105e-78	-8.615850e-47
Msa0931090	Msa1086170	0.894768	1.807445e-75	-8.615850e-47
Msa0931090	Msa1086210	0.801059	1.076279e-48	-8.615850e-47
Msa0931090	Msa1086260	0.850177	2.009914e-60	-8.615850e-47
Msa0931090	Msa1086290	0.901257	3.217613e-78	-8.615850e-47
Msa0931090	Msa1086330	0.837654	4.576014e-57	-8.615850e-47
Msa0931090	Msa1086340	0.845533	3.826641e-59	-8.615850e-47
Msa0931090	Msa1086370	0.879414	1.271163e-69	-8.615850e-47
Msa0931090	Msa1086410	0.802732	4.878740e-49	-8.615850e-47
Msa0931090	Msa1086440	0.867044	1.829397e-65	-8.615850e-47
Msa0931090	Msa1086480	0.887540	1.304744e-72	-8.615850e-47
Msa0931090	Msa1086520	0.834977	2.192986e-56	-8.615850e-47
Msa0931090	Msa1086630	0.852680	3.937760e-61	-8.615850e-47
Msa0931090	Msa1086690	0.842950	1.891102e-58	-8.615850e-47
Msa0931090	Msa1086830	0.852753	3.753819e-61	-8.615850e-47
Msa0931090	Msa1086870	0.855871	4.714582e-62	-8.615850e-47
Msa0931090	Msa1087000	0.801820	7.519371e-49	-8.615850e-47
Msa0931090	Msa1090230	0.835936	1.255129e-56	-8.615850e-47
Msa0931090	Msa1091690	0.835969	1.231328e-56	-8.615850e-47
Msa0931090	Msa1123340	0.820027	8.519726e-53	-8.615850e-47
Msa0931090	Msa1124440	0.823907	1.075661e-53	-8.615850e-47
Msa0931090	Msa1128350	0.818447	1.950689e-52	-8.615850e-47
Msa0931090	Msa1132540	0.808714	2.703847e-50	-8.615850e-47
Msa0931090	Msa1143140	0.892665	1.287042e-74	-8.615850e-47
Msa0931090	Msa1143150	0.813430	2.569481e-51	-8.615850e-47
Msa0931090	Msa1157160	0.826186	3.113955e-54	-8.615850e-47
Msa0931090	Msa1168130	0.816341	5.812360e-52	-8.615850e-47
Msa0931090	Msa1173410	0.820079	8.291369e-53	-8.615850e-47
Msa0931090	Msa1195860	0.828589	8.265984e-55	-8.615850e-47
Msa0931090	Msa1198420	0.811164	8.027972e-51	-8.615850e-47
Msa0931090	Msa1199690	0.808766	2.636275e-50	-8.615850e-47
Msa0931090	Msa1208510	0.804488	2.108934e-49	-8.615850e-47
Msa0931090	Msa1209390	0.827612	1.421143e-54	-8.615850e-47
Msa0931090	Msa1220740	0.817998	2.465003e-52	-8.615850e-47
Msa0931090	Msa1248400	0.814132	1.800568e-51	-8.615850e-47
Msa0931090	Msa1252040	0.808876	2.497327e-50	-8.615850e-47
Msa0931090	Msa1284030	0.816294	5.956482e-52	-8.615850e-47
Msa0931090	Msa1298740	0.821796	3.337961e-53	-8.615850e-47
Msa0931090	Msa1300880	0.801983	6.960151e-49	-8.615850e-47
Msa0931090	Msa1302920	0.827095	1.890295e-54	-8.615850e-47
Msa0931090	Msa1309910	0.846020	2.823239e-59	-8.615850e-47
Msa0931090	Msa1327820	0.820544	6.486934e-53	-8.615850e-47
Msa0931090	Msa1334650	0.812324	4.490695e-51	-8.615850e-47
Msa0931090	Msa1339250	0.822724	2.032272e-53	-8.615850e-47
Msa0931090	Msa1351560	0.812673	3.766108e-51	-8.615850e-47
Msa0931090	Msa1352820	0.826440	2.709361e-54	-8.615850e-47
Msa0931090	Msa1354850	0.867181	1.652977e-65	-8.615850e-47
Msa0931090	Msa1354890	0.897847	9.453611e-77	-8.615850e-47
Msa0931090	Msa1354930	0.805624	1.220134e-49	-8.615850e-47
Msa0931090	Msa1355020	0.853091	3.004004e-61	-8.615850e-47
Msa0931090	Msa1355060	0.889416	2.469917e-73	-8.615850e-47
Msa0931090	Msa1355100	0.806156	9.430192e-50	-8.615850e-47
Msa0931090	Msa1365210	0.814125	1.806462e-51	-8.615850e-47
Msa0931090	Msa1367810	0.813933	1.991322e-51	-8.615850e-47
Msa0931090	Msa1369860	0.804919	1.713985e-49	-8.615850e-47
Msa0931090	Msa1371250	0.808664	2.771928e-50	-8.615850e-47
Msa0931090	Msa1373590	0.808952	2.404831e-50	-8.615850e-47
Msa0931090	Msa1380540	0.852368	4.831981e-61	-8.615850e-47
Msa0931090	Msa1380580	0.829721	4.392520e-55	-8.615850e-47
Msa0931090	Msa1385940	0.830703	2.529823e-55	-8.615850e-47
Msa0931090	Msa1387090	0.815927	7.194880e-52	-8.615850e-47
Msa0931090	Msa1390410	0.800656	1.301249e-48	-8.615850e-47
Msa0931090	Msa1394050	0.834994	2.172441e-56	-8.615850e-47
Msa0931090	Msa1394090	0.855988	4.358185e-62	-8.615850e-47
Msa0931090	Msa1394100	0.842725	2.170038e-58	-8.615850e-47
Msa0931090	Msa1394140	0.854976	8.593551e-62	-8.615850e-47
Msa0931090	Msa1394170	0.840885	6.638963e-58	-8.615850e-47
Msa0931090	Msa1394240	0.901286	3.125122e-78	-8.615850e-47
Msa0931090	Msa1394280	0.842446	2.574011e-58	-8.615850e-47
Msa0931090	Msa1406230	0.814433	1.544286e-51	-8.615850e-47
Msa0931090	Msa1415120	0.828506	8.657987e-55	-8.615850e-47
Msa0931090	Msa1422750	0.809560	1.781345e-50	-8.615850e-47
Msa0931090	Msa1426870	0.812801	3.531787e-51	-8.615850e-47
Msa0931090	Msa1435470	0.810854	9.369651e-51	-8.615850e-47
Msa0931090	Msa1458920	0.805125	1.552236e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931090	MtrunA17_Chr4g0015681	96.667	60	2	1	60	1	60	7.64e-35	113
Msa0931090	MtrunA17_CPg0492901	96.667	60	2	1	60	1	60	7.64e-35	113
Msa0931090	MtrunA17_Chr4g0016771	96.667	60	2	1	60	1	60	7.64e-35	113

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0931090	ATCG00070.1	76.667	60	14	0	1	60	1	60	3.76e-26	92.0
Msa0931090	ATCG00080.1	97.222	36	1	0	62	97	1	36	2.92e-19	73.9

Find 6 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGCTTAATATCTTTAGCT+TGG	0.440922	6_2:-80324686	Msa0931090:CDS
ACTGGCATAAAATCTACAAT+TGG	0.453871	6_2:+80324583	None:intergenic
AATGATCCAGGACGTAATCC+TGG	0.474800	6_2:-80324036	Msa0931090:CDS
GGATTCCTATCTAATGATCC+AGG	0.536202	6_2:-80324048	Msa0931090:CDS
TCACGTCCAGGATTACGTCC+TGG	0.548081	6_2:+80324030	None:intergenic
TACGTCCTGGATCATTAGAT+AGG	0.581605	6_2:+80324043	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTCCAAATATTAAAATTTT+TGG	-	chr6_2:80324312-80324331	Msa0931090:intron	10.0%
!!!	TATCCAAAAATTTTAATATT+TGG	+	chr6_2:80324318-80324337	None:intergenic	10.0%
!!	ATTTCAAAAAAAAAAAACTT+AGG	+	chr6_2:80324469-80324488	None:intergenic	10.0%
!!!	AATTTTAATATTTGGAATCA+AGG	+	chr6_2:80324310-80324329	None:intergenic	15.0%
!!!	CGTTTTTTTTTTAATTATCT+TGG	-	chr6_2:80324564-80324583	Msa0931090:CDS	15.0%
!!	GAAAAAACTACTTGAATAAA+GGG	+	chr6_2:80324069-80324088	None:intergenic	20.0%
!!	AGAAAAAACTACTTGAATAA+AGG	+	chr6_2:80324070-80324089	None:intergenic	20.0%
!!!	TTATTCAAGTAGTTTTTTCT+TGG	-	chr6_2:80324070-80324089	Msa0931090:CDS	20.0%
!!	TGAAAATTCTATTATTCGAT+TGG	-	chr6_2:80324356-80324375	Msa0931090:intron	20.0%
!!!	TGTGGATATGAAAAAAATTT+TGG	-	chr6_2:80324407-80324426	Msa0931090:intron	20.0%
!!	TCTTATAAACTTAGTATCAA+AGG	-	chr6_2:80324498-80324517	Msa0931090:intron	20.0%
!!!	TTTTTCTCTTAGCTTTTGTT+TGG	-	chr6_2:80324162-80324181	Msa0931090:intron	25.0%
!!!	TTTGTTTCTCTTTTCATCTT+CGG	-	chr6_2:80324639-80324658	Msa0931090:CDS	25.0%
!	AATTGGATTCAAAAAAGCGT+AGG	+	chr6_2:80324111-80324130	None:intergenic	30.0%
	ACTGGCATAAAATCTACAAT+TGG	+	chr6_2:80324128-80324147	None:intergenic	30.0%
!!	AAAAAGAGTAAGGGTATTAC+TGG	+	chr6_2:80324146-80324165	None:intergenic	30.0%
	GCTAAGAGAAAAAAGAGTAA+GGG	+	chr6_2:80324155-80324174	None:intergenic	30.0%
	AGCTAAGAGAAAAAAGAGTA+AGG	+	chr6_2:80324156-80324175	None:intergenic	30.0%
!!	AATCAAGATCTAGGTATTGG+TGG	+	chr6_2:80324388-80324407	None:intergenic	35.0%
	CACAATCAAGATCTAGGTAT+TGG	+	chr6_2:80324391-80324410	None:intergenic	35.0%
	CAATACCTAGATCTTGATTG+TGG	-	chr6_2:80324389-80324408	Msa0931090:intron	35.0%
	CATATCCACAATCAAGATCT+AGG	+	chr6_2:80324397-80324416	None:intergenic	35.0%
	GAGAATCTATTCTCTTTCTC+TGG	-	chr6_2:80324541-80324560	Msa0931090:CDS	35.0%
!	TTCAAAAAAGCGTAGGCTTC+AGG	+	chr6_2:80324104-80324123	None:intergenic	40.0%
	GGATTCCTATCTAATGATCC+AGG	-	chr6_2:80324660-80324679	Msa0931090:CDS	40.0%
	TACGTCCTGGATCATTAGAT+AGG	+	chr6_2:80324668-80324687	None:intergenic	40.0%
!!	CAAGATCTAGGTATTGGTGG+TGG	+	chr6_2:80324385-80324404	None:intergenic	45.0%
	AATGATCCAGGACGTAATCC+TGG	-	chr6_2:80324672-80324691	Msa0931090:CDS	45.0%
!!!	AATAAATTCTTAATTTTTTT+CGG	+	chr6_2:80324233-80324252	None:intergenic	5.0%
	TCACGTCCAGGATTACGTCC+TGG	+	chr6_2:80324681-80324700	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	80324023	80324707	80324023	ID=Msa0931090;Name=Msa0931090
chr6_2	mRNA	80324023	80324707	80324023	ID=Msa0931090-mRNA-1;Parent=Msa0931090;Name=Msa0931090-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|0\|0\|2\|0\|97
chr6_2	exon	80324533	80324707	80324533	ID=Msa0931090-mRNA-1:exon:14076;Parent=Msa0931090-mRNA-1
chr6_2	exon	80324023	80324141	80324023	ID=Msa0931090-mRNA-1:exon:14075;Parent=Msa0931090-mRNA-1
chr6_2	CDS	80324533	80324707	80324533	ID=Msa0931090-mRNA-1:cds;Parent=Msa0931090-mRNA-1
chr6_2	CDS	80324023	80324141	80324023	ID=Msa0931090-mRNA-1:cds;Parent=Msa0931090-mRNA-1

Gene Sequence	>Msa0931090 ATGCTTAATATCTTTAGCTTGGTCTGTATTTGTATTGACTCTGCCCTTTATTCAAGTAGTTTTTTCTTGGCAAAATTACCTGAAGCCTACGCTTTTTTGAATCCAATTGTAGATTTTATGCCAGTAATACCCTTACTCTTTTTTCTCTTAGCTTTTGTTTGGCAAGCTGCTGTAAATTTTGTAATGCTTACTCTAAAACTATTTGTTTACACGATAGTGATATTCTTTGTTTCTCTTTTCATCTTCGGATTCCTATCTAATGATCCAGGACGTAATCCTGGACGTGAAGAATAA
Protein sequence	>Msa0931090 MLNIFSLVCICIDSALYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVNFVMLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGREE*