AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644760 MtrunA17_Chr4g0020011 97.143 385 6 3 1 384 1 381 0.0 748
Msa0644760 MtrunA17_Chr3g0090071 75.177 282 68 1 102 383 111 390 5.67e-158 449
Msa0644760 MtrunA17_Chr4g0039291 72.857 280 76 0 101 380 109 388 3.72e-153 437
Msa0644760 MtrunA17_Chr3g0114241 37.288 295 168 6 98 380 427 716 2.12e-55 194
Msa0644760 MtrunA17_Chr2g0320711 33.333 273 169 5 116 380 168 435 1.09e-38 143
Msa0644760 MtrunA17_Chr7g0240091 31.338 284 182 5 105 380 170 448 3.27e-32 126
Msa0644760 MtrunA17_Chr7g0245291 32.479 234 141 5 150 381 108 326 4.92e-29 115
Msa0644760 MtrunA17_Chr7g0245261 32.645 242 145 5 142 380 92 318 2.97e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644760 AT5G12470.1 73.702 289 76 0 93 381 96 384 2.64e-161 458
Msa0644760 AT3G56140.2 40.000 295 160 6 98 380 200 489 4.90e-60 202
Msa0644760 AT2G40400.2 40.339 295 159 6 98 380 410 699 8.24e-60 206
Msa0644760 AT2G40400.1 40.339 295 159 6 98 380 410 699 8.24e-60 206
Msa0644760 AT3G56140.1 40.000 295 160 6 98 380 419 708 1.28e-58 203
Msa0644760 AT3G56140.3 40.000 295 160 6 98 380 419 708 1.28e-58 203
Msa0644760 AT2G40400.3 39.184 245 133 5 98 330 410 650 2.80e-44 162
Msa0644760 AT5G22790.1 32.542 295 173 8 103 380 148 433 1.19e-35 135
Msa0644760 AT2G37860.3 31.633 294 176 9 103 380 148 432 3.09e-33 129
Msa0644760 AT2G37860.4 31.633 294 176 9 103 380 148 432 3.09e-33 129
Msa0644760 AT3G08630.1 31.356 236 141 5 154 384 104 323 3.20e-28 113
Msa0644760 AT3G08640.1 30.043 233 148 4 154 384 107 326 8.09e-26 107
Msa0644760 AT2G37860.2 29.268 205 127 5 103 294 148 347 1.10e-18 86.7
Msa0644760 AT2G37860.1 29.268 205 127 5 103 294 148 347 1.10e-18 86.7

Find 138 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCAAACGATGAGGTTTC+TGG 0.223216 4_3:+49051392 None:intergenic
TTTCGATGGTTGCTTAATTT+TGG 0.265425 4_3:-49055779 Msa0644760:CDS
CGAGCCCAAGAAAGTGTTTC+CGG 0.280740 4_3:+49051989 None:intergenic
GTCCAGAAAATAAGGGATTA+AGG 0.282122 4_3:-49051836 Msa0644760:exon
GGTGAAAGCGGGACGAGTTC+CGG 0.283707 4_3:-49055846 Msa0644760:CDS
GGGTTGGAGTCCAGAAAATA+AGG 0.297126 4_3:-49051844 Msa0644760:CDS
ACCAACGGTGGCGGCGGAAT+TGG 0.314588 4_3:-49056022 Msa0644760:CDS
TTGAAGAAGAGTGGTGGTTT+TGG 0.320949 4_3:+49056152 None:intergenic
TAGAACCGGAAACACTTTCT+TGG 0.331700 4_3:-49051994 Msa0644760:CDS
CACTTAACATGAGCTTGTTT+TGG 0.340136 4_3:+49052033 None:intergenic
ACCGTTGGTGGATGCATAAA+TGG 0.349408 4_3:+49056036 None:intergenic
CTTATTGCTAAATTCTTCTT+CGG 0.353659 4_3:-49053378 Msa0644760:CDS
CAACACTCAACAGGTGGCTT+TGG 0.358033 4_3:-49053234 Msa0644760:intron
AATACAACACACCAACATAA+TGG 0.375327 4_3:+49051738 None:intergenic
GTGAAAGCGGGACGAGTTCC+GGG 0.377853 4_3:-49055845 Msa0644760:CDS
ATCTGCTTTGCTGTTAGAAC+CGG 0.383744 4_3:-49052008 Msa0644760:CDS
GGATGCATAAATGGCGGTTA+TGG 0.384238 4_3:+49056045 None:intergenic
AGAACCGGAAACACTTTCTT+GGG 0.399853 4_3:-49051993 Msa0644760:CDS
GGTGGCAGTGGAAGCGGTGG+AGG 0.402348 4_3:-49055992 Msa0644760:CDS
ACTCAACAGGTGGCTTTGGC+TGG 0.406450 4_3:-49053230 Msa0644760:intron
GGGATGGAGTGTAGAGAGAT+TGG 0.407479 4_3:+49056237 None:intergenic
GATGCATAAATGGCGGTTAT+GGG 0.413302 4_3:+49056046 None:intergenic
GGCGGCGGAATTGGAGAATC+AGG 0.421149 4_3:-49056013 Msa0644760:CDS
AGAGAAACAAAGTGAAGAAA+AGG 0.424593 4_3:+49051444 None:intergenic
AAACAGAGAAGAAGCGTTGC+TGG 0.424722 4_3:-49055924 Msa0644760:CDS
TATTGTGTCATGAAATCAAT+CGG 0.427736 4_3:-49051797 Msa0644760:three_prime_UTR
TGATGATTTGTTTCTTGCTA+AGG 0.429196 4_3:-49055732 Msa0644760:CDS
GATGGATCTTTAACCTTCGC+TGG 0.430139 4_3:+49051639 None:intergenic
GGATGGAGTGTAGAGAGATT+GGG 0.435346 4_3:+49056238 None:intergenic
ATTTCAGACTGCTGCGGAGT+TGG 0.438593 4_3:-49053649 Msa0644760:intron
GGTGATGGTGGTGGCGATGA+TGG 0.440223 4_3:-49055968 Msa0644760:CDS
AATTCCGCCGCCACCGTTGG+TGG 0.441978 4_3:+49056024 None:intergenic
CCACCACCTTCCGTCAGTGC+TGG 0.447630 4_3:-49053402 Msa0644760:CDS
GGCAGTGGAAGCGGTGGAGG+AGG 0.448523 4_3:-49055989 Msa0644760:CDS
AGAGAAAGAACGAGGGTGGA+TGG 0.448523 4_3:+49056183 None:intergenic
GAGAGATGGGAGTGGGAGAG+AGG 0.449952 4_3:+49056129 None:intergenic
AGTCCTGCTAGCTATGTTGA+TGG 0.451552 4_3:+49051621 None:intergenic
AAGCTATTTGCAGTTGGGAC+TGG 0.451891 4_3:-49053072 Msa0644760:CDS
TCCAATTCCGCCGCCACCGT+TGG 0.461696 4_3:+49056021 None:intergenic
ACGGGGAGTGAAGAGGTTGT+TGG 0.463805 4_3:+49056072 None:intergenic
GTGGATTATGCTCGCTGGGT+TGG 0.464416 4_3:-49051860 Msa0644760:CDS
TGGACGACGGCGGGAGATGA+TGG 0.465286 4_3:+49056105 None:intergenic
ACCGCTTCGGCTAAATCCGC+TGG 0.467208 4_3:+49055866 None:intergenic
GTTTCTTGCTAAGGTTGCTA+TGG 0.467525 4_3:-49055723 Msa0644760:CDS
CGAAGAGAAACCGTCGGAGC+AGG 0.469158 4_3:+49053426 None:intergenic
AGAAGCGTTGCTGGTACTTA+CGG 0.475361 4_3:-49055915 Msa0644760:CDS
GGTGGGTGGATTATGCTCGC+TGG 0.481668 4_3:-49051865 Msa0644760:CDS
TGTTGCCTATGGGGTTTACA+TGG 0.487654 4_3:-49052224 Msa0644760:CDS
ATGAGAATGTGGACGACGGC+GGG 0.489108 4_3:+49056096 None:intergenic
GAAAGAACGAGGGTGGATGG+TGG 0.490060 4_3:+49056186 None:intergenic
TTATCAACGAGTGTTGCCTA+TGG 0.493065 4_3:-49052235 Msa0644760:CDS
AGCGGTGGAGGAGGTGATGG+TGG 0.494404 4_3:-49055980 Msa0644760:CDS
TACGGAAGTAGGTAAGTCAT+TGG 0.495225 4_3:-49055897 Msa0644760:CDS
GAATCAGGTGGCAGTGGAAG+CGG 0.497526 4_3:-49055998 Msa0644760:CDS
TATCAACGAGTGTTGCCTAT+GGG 0.498398 4_3:-49052234 Msa0644760:CDS
TGATGGAGAGAGATGGGAGT+GGG 0.500386 4_3:+49056122 None:intergenic
TGTGTGGCTTCCTGCTCCGA+CGG 0.501035 4_3:-49053436 Msa0644760:CDS
ACCAGGTATCAAATTCTAGC+TGG 0.501427 4_3:-49052092 Msa0644760:intron
GGAGAGAGGTTGAAGAAGAG+TGG 0.502379 4_3:+49056143 None:intergenic
AGTTGGGACTGGTGCATCAC+TGG 0.504898 4_3:-49053061 Msa0644760:intron
GCATCCACCAACGGTGGCGG+CGG 0.506271 4_3:-49056028 Msa0644760:CDS
GGAAGCGGTGGAGGAGGTGA+TGG 0.507443 4_3:-49055983 Msa0644760:CDS
GAGCTAAGCTATTTGCAGTT+GGG 0.507915 4_3:-49053077 Msa0644760:CDS
CGCATTGATTAATGCGCGGA+AGG 0.511156 4_3:-49052302 Msa0644760:CDS
TATTCACTTATACAGAGAAT+AGG 0.511633 4_3:-49053200 Msa0644760:CDS
GGAGCTAAGCTATTTGCAGT+TGG 0.516112 4_3:-49053078 Msa0644760:CDS
AAGCATAAAATCTGCTACAA+TGG 0.517084 4_3:+49053458 None:intergenic
CGGGAGATGATGGAGAGAGA+TGG 0.517838 4_3:+49056115 None:intergenic
AATGGCGGTTATGGGAGGAC+GGG 0.519477 4_3:+49056054 None:intergenic
TCGTCCCGCTTTCACCGCTT+CGG 0.521428 4_3:+49055853 None:intergenic
TGGTGATAATTGAAGACTCT+TGG 0.526733 4_3:+49051672 None:intergenic
TACACTCCATCCCATGGCCA+TGG 0.528152 4_3:-49056227 Msa0644760:exon
AGCAATAAGTCCAGCACTGA+CGG 0.529127 4_3:+49053392 None:intergenic
AGAGAGAGAAAGAACGAGGG+TGG 0.530359 4_3:+49056179 None:intergenic
TGGGAGGACGGGGAGTGAAG+AGG 0.531428 4_3:+49056065 None:intergenic
GGTGGAGGAGGTGATGGTGG+TGG 0.536613 4_3:-49055977 Msa0644760:CDS
GTGGGTGGATTATGCTCGCT+GGG 0.540441 4_3:-49051864 Msa0644760:CDS
ATGATGGAGAGAGATGGGAG+TGG 0.546774 4_3:+49056121 None:intergenic
TTAGCCGAAGCGGTGAAAGC+GGG 0.547028 4_3:-49055857 Msa0644760:CDS
GGGAGATGATGGAGAGAGAT+GGG 0.548685 4_3:+49056116 None:intergenic
TATGCATCCACCAACGGTGG+CGG 0.553293 4_3:-49056031 Msa0644760:CDS
CTTCCTCTCCACTCCACGGT+CGG 0.554747 4_3:-49056266 Msa0644760:five_prime_UTR
TGATTGAAATTCCATTATGT+TGG 0.555827 4_3:-49051749 Msa0644760:three_prime_UTR
TGGAGAGAGAGAAAGAACGA+GGG 0.556227 4_3:+49056176 None:intergenic
AAATGGCGGTTATGGGAGGA+CGG 0.556308 4_3:+49056053 None:intergenic
ATTGGAGAATCAGGTGGCAG+TGG 0.557497 4_3:-49056004 Msa0644760:CDS
GATCCATCAACATAGCTAGC+AGG 0.558269 4_3:-49051624 Msa0644760:three_prime_UTR
GAGAGGTTGAAGAAGAGTGG+TGG 0.558566 4_3:+49056146 None:intergenic
ACAGAGAATAGGTGCTATTG+TGG 0.560956 4_3:-49053189 Msa0644760:intron
GCCATTTATGCATCCACCAA+CGG 0.563296 4_3:-49056037 Msa0644760:CDS
TTGCTGGTACTTACGGAAGT+AGG 0.563924 4_3:-49055908 Msa0644760:CDS
GGTTGGAGTCCAGAAAATAA+GGG 0.565106 4_3:-49051843 Msa0644760:CDS
AAGAAGCCATGGCCATGGGA+TGG 0.570088 4_3:+49056221 None:intergenic
CGGTGTTGGCATCTTTACAA+AGG 0.571151 4_3:-49055696 Msa0644760:intron
GCAACACTCGTTGATAATAC+CGG 0.574937 4_3:+49052241 None:intergenic
GTGGAGAGAGAGAAAGAACG+AGG 0.576448 4_3:+49056175 None:intergenic
TCAGGTGGCAGTGGAAGCGG+TGG 0.578703 4_3:-49055995 Msa0644760:CDS
GTTGCTATGGAATGCGGTGT+TGG 0.583902 4_3:-49055710 Msa0644760:CDS
GGGGTGGACCGACCGTGGAG+TGG 0.585102 4_3:+49056258 None:intergenic
CCATATCTTCTGCAGCGGAA+CGG 0.585433 4_3:-49053099 Msa0644760:intron
ATTGTGTCATGAAATCAATC+GGG 0.588382 4_3:-49051796 Msa0644760:three_prime_UTR
GGACCGACCGTGGAGTGGAG+AGG 0.595106 4_3:+49056263 None:intergenic
CCAGCACTGACGGAAGGTGG+TGG 0.601074 4_3:+49053402 None:intergenic
TGATGAAGAAGCCATGGCCA+TGG 0.605310 4_3:+49056216 None:intergenic
AATCTCTTCACAATCGAACC+CGG 0.607903 4_3:+49055827 None:intergenic
TAGCTGGAATTATTGAACAA+CGG 0.608049 4_3:-49052076 Msa0644760:CDS
GCATAAATGGCGGTTATGGG+AGG 0.612260 4_3:+49056049 None:intergenic
GATGGAGTGTAGAGAGATTG+GGG 0.614439 4_3:+49056239 None:intergenic
TTTAGCCGAAGCGGTGAAAG+CGG 0.617657 4_3:-49055858 Msa0644760:CDS
TGACGAGGCAGAGGAAGTAC+CGG 0.617957 4_3:-49052260 Msa0644760:CDS
TGGCAGTATCTAGCAACTTG+AGG 0.618786 4_3:-49052204 Msa0644760:intron
ATCAACGAGTGTTGCCTATG+GGG 0.625712 4_3:-49052233 Msa0644760:CDS
AATGAGAATGTGGACGACGG+CGG 0.628298 4_3:+49056095 None:intergenic
TCTCTCTACACTCCATCCCA+TGG 0.629893 4_3:-49056233 Msa0644760:exon
AGATTGGGGTGGACCGACCG+TGG 0.630252 4_3:+49056253 None:intergenic
AGTCCAGCACTGACGGAAGG+TGG 0.630398 4_3:+49053399 None:intergenic
GAATGATGATGAAGAAGCCA+TGG 0.630932 4_3:+49056210 None:intergenic
ATGGCGGTTATGGGAGGACG+GGG 0.632753 4_3:+49056055 None:intergenic
AGGTTGTTGGAATGAGAATG+TGG 0.632978 4_3:+49056085 None:intergenic
GATGAAGAAGCCATGGCCAT+GGG 0.633092 4_3:+49056217 None:intergenic
GCCAGCGGATTTAGCCGAAG+CGG 0.643103 4_3:-49055867 Msa0644760:CDS
TCGACTTCCTCTCCACTCCA+CGG 0.643794 4_3:-49056270 Msa0644760:five_prime_UTR
GCTAAGGTTGCTATGGAATG+CGG 0.648096 4_3:-49055716 Msa0644760:CDS
ATAAGTCCAGCACTGACGGA+AGG 0.648262 4_3:+49053396 None:intergenic
TCTTACCATGAATAGGTGGG+TGG 0.654262 4_3:-49051879 Msa0644760:intron
GTCATTGGAGAATTTGCCAG+CGG 0.655188 4_3:-49055882 Msa0644760:CDS
CCACGCATAGTGTCCAGCGA+AGG 0.656661 4_3:-49051652 Msa0644760:three_prime_UTR
GGCGGAATTGGAGAATCAGG+TGG 0.664062 4_3:-49056010 Msa0644760:CDS
CCTTCGCTGGACACTATGCG+TGG 0.667915 4_3:+49051652 None:intergenic
TACTGCCATGTAAACCCCAT+AGG 0.674032 4_3:+49052219 None:intergenic
GTTTACATTTCAGACTGCTG+CGG 0.677064 4_3:-49053655 Msa0644760:intron
TGGCGATGATGGTGAATCAG+AGG 0.693089 4_3:-49055957 Msa0644760:CDS
GGTGGTCGAAGAGAAACCGT+CGG 0.706631 4_3:+49053420 None:intergenic
ATTTATGCATCCACCAACGG+TGG 0.707895 4_3:-49056034 Msa0644760:CDS
GTTGGTGGATGCATAAATGG+CGG 0.713035 4_3:+49056039 None:intergenic
GGAGTGTAGAGAGATTGGGG+TGG 0.713691 4_3:+49056242 None:intergenic
CAAACGCATTGATTAATGCG+CGG 0.722511 4_3:-49052306 Msa0644760:CDS
TGGAATGAGAATGTGGACGA+CGG 0.784154 4_3:+49056092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTAATTATTAAT+AGG - chr4_3:49054243-49054262 Msa0644760:intron 0.0%
!!! ATATATGACATTTTTTTTTT+CGG + chr4_3:49053254-49053273 None:intergenic 10.0%
!!! TGTAAAACATATTTTAATAT+AGG - chr4_3:49053280-49053299 Msa0644760:intron 10.0%
!! CAATAGTATAATATATTATT+TGG - chr4_3:49053634-49053653 Msa0644760:CDS 10.0%
!! TAATTTAAATATGTTTATGA+TGG + chr4_3:49053862-49053881 None:intergenic 10.0%
!! TTATAAAATATAATTTGGAA+CGG + chr4_3:49054208-49054227 None:intergenic 10.0%
!! ATTTAATTATTAATAGGTAA+TGG - chr4_3:49054249-49054268 Msa0644760:intron 10.0%
!! AATTATATATGTAATGAATA+TGG + chr4_3:49055064-49055083 None:intergenic 10.0%
!! ATTATATACTAATTATTACA+TGG + chr4_3:49055334-49055353 None:intergenic 10.0%
!! TTAATAAGTAAACTGAAATA+TGG - chr4_3:49052846-49052865 Msa0644760:intron 15.0%
!!! ACAAATTTTGTTTTTATATC+AGG - chr4_3:49053547-49053566 Msa0644760:intron 15.0%
!!! TTTTTTCATTGTTAATCTAT+TGG - chr4_3:49054013-49054032 Msa0644760:intron 15.0%
!!! TTGCTGTTTTTTTTTTTTTT+TGG - chr4_3:49056155-49056174 Msa0644760:CDS 15.0%
!!! TGCTGTTTTTTTTTTTTTTT+GGG - chr4_3:49056156-49056175 Msa0644760:CDS 15.0%
!! GTATCAAAATTACACATAAA+TGG - chr4_3:49052209-49052228 Msa0644760:CDS 20.0%
!! ACTAACAATACTATCTAATT+TGG + chr4_3:49052367-49052386 None:intergenic 20.0%
!! ATAATACGTGGTTAAATATA+TGG - chr4_3:49052414-49052433 Msa0644760:intron 20.0%
!!! TTCATTAGTTTTTATCTCAT+TGG + chr4_3:49052716-49052735 None:intergenic 20.0%
!! AATCGATATTTAATACATGA+CGG + chr4_3:49052763-49052782 None:intergenic 20.0%
!! ATAAATGTATCAAGAGAAAA+AGG - chr4_3:49052872-49052891 Msa0644760:intron 20.0%
!!! CATTTTTACAATAAATGTGT+CGG - chr4_3:49052918-49052937 Msa0644760:intron 20.0%
!!! TTTAGAATAACAATACCAAT+GGG + chr4_3:49053050-49053069 None:intergenic 20.0%
!!! TTTTAGAATAACAATACCAA+TGG + chr4_3:49053051-49053070 None:intergenic 20.0%
!! TGTTATATCTATTGTTTAGT+TGG + chr4_3:49053219-49053238 None:intergenic 20.0%
!!! TATTTTAATATAGGTATGTC+TGG - chr4_3:49053289-49053308 Msa0644760:intron 20.0%
!! TAACATATGCTTATTTACTT+AGG - chr4_3:49053344-49053363 Msa0644760:intron 20.0%
!! AACATATGCTTATTTACTTA+GGG - chr4_3:49053345-49053364 Msa0644760:intron 20.0%
!!! TGGAACTTTTGTTTTATAAT+AGG - chr4_3:49053595-49053614 Msa0644760:intron 20.0%
!!! ATAATAGGAACTTTTGTTTT+TGG - chr4_3:49053610-49053629 Msa0644760:CDS 20.0%
!!! ATATATTATTTGGTCTTGAA+CGG - chr4_3:49053644-49053663 Msa0644760:CDS 20.0%
!!! TAACAATGAAGTTTGTTAAT+GGG - chr4_3:49053714-49053733 Msa0644760:intron 20.0%
!!! TAAATATGTTTATGATGGAA+TGG + chr4_3:49053857-49053876 None:intergenic 20.0%
!!! TTATTTTACTTTTTCATGCT+TGG - chr4_3:49054428-49054447 Msa0644760:intron 20.0%
!!! TTTAAGATAATCTTCCTTTA+AGG - chr4_3:49055240-49055259 Msa0644760:intron 20.0%
!! ATAGTTATTATGCATTATTG+AGG + chr4_3:49055568-49055587 None:intergenic 20.0%
!! AGTAAATTATATAGACATGT+AGG + chr4_3:49055790-49055809 None:intergenic 20.0%
!! GATTCATGTAATAAATAATG+AGG + chr4_3:49055833-49055852 None:intergenic 20.0%
!!! GCTGTTTTTTTTTTTTTTTG+GGG - chr4_3:49056157-49056176 Msa0644760:CDS 20.0%
!!! CTGTTTTTTTTTTTTTTTGG+GGG - chr4_3:49056158-49056177 Msa0644760:CDS 20.0%
!!! TGTTTTTTTTTTTTTTTGGG+GGG - chr4_3:49056159-49056178 Msa0644760:CDS 20.0%
!! TTTGTTTCTTTGTACCAATT+TGG - chr4_3:49052086-49052105 Msa0644760:CDS 25.0%
! CAAAATTACACATAAATGGA+AGG - chr4_3:49052213-49052232 Msa0644760:CDS 25.0%
!!! ATATTAGTCATTTTGAGAGT+TGG - chr4_3:49052338-49052357 Msa0644760:intron 25.0%
!!! TATTAGTCATTTTGAGAGTT+GGG - chr4_3:49052339-49052358 Msa0644760:intron 25.0%
! TTAACCACGTATTATCAAAT+TGG + chr4_3:49052409-49052428 None:intergenic 25.0%
! AGCAAACATATAATTGATCT+AGG + chr4_3:49052557-49052576 None:intergenic 25.0%
! TATATGTTTGCTTCGTTATT+AGG - chr4_3:49052565-49052584 Msa0644760:intron 25.0%
!!! TCCTATTTGTTGTCAAAATT+AGG + chr4_3:49052656-49052675 None:intergenic 25.0%
!!! TAATTTTGACAACAAATAGG+AGG - chr4_3:49052655-49052674 Msa0644760:intron 25.0%
! AATTGTCTTAGATATAGTAC+TGG - chr4_3:49052690-49052709 Msa0644760:intron 25.0%
! TATCAAGAGAAAAAGGTAAT+TGG - chr4_3:49052879-49052898 Msa0644760:intron 25.0%
!! TTCTTTATTTAGTTTCCCAA+AGG - chr4_3:49052944-49052963 Msa0644760:intron 25.0%
! AATAAGATTCATTCCAACTA+AGG + chr4_3:49052973-49052992 None:intergenic 25.0%
! TTAGAATAACAATACCAATG+GGG + chr4_3:49053049-49053068 None:intergenic 25.0%
! ACATATGCTTATTTACTTAG+GGG - chr4_3:49053346-49053365 Msa0644760:intron 25.0%
!!! TATATTATTTGGTCTTGAAC+GGG - chr4_3:49053645-49053664 Msa0644760:CDS 25.0%
!!! GTAACAATGAAGTTTGTTAA+TGG - chr4_3:49053713-49053732 Msa0644760:intron 25.0%
!! TTCAGAGTTTTTATCTAAAC+CGG + chr4_3:49053771-49053790 None:intergenic 25.0%
! GAACATAATGTATTGTATCA+AGG + chr4_3:49053959-49053978 None:intergenic 25.0%
! TGATACAATACATTATGTTC+TGG - chr4_3:49053959-49053978 Msa0644760:intron 25.0%
!! TCTATTGGATTGAATTTTCT+TGG - chr4_3:49054028-49054047 Msa0644760:intron 25.0%
! AACGCAATATTCATTACAAA+TGG + chr4_3:49054058-49054077 None:intergenic 25.0%
! CTTATTGCTAAATTCTTCTT+CGG - chr4_3:49054352-49054371 Msa0644760:intron 25.0%
! TATTCACTTATACAGAGAAT+AGG - chr4_3:49054530-49054549 Msa0644760:intron 25.0%
! GAACTTCAAAACAAAAGAAT+TGG - chr4_3:49054782-49054801 Msa0644760:intron 25.0%
!! ATTAGACTAAGCAATTTTCA+TGG - chr4_3:49055095-49055114 Msa0644760:intron 25.0%
!! TTTTCATGGTAACTAAAGAT+AGG - chr4_3:49055109-49055128 Msa0644760:intron 25.0%
! ATTTATGTTCTCCAATCAAT+TGG + chr4_3:49055203-49055222 None:intergenic 25.0%
! TTGTAGTATATTCATCAATG+AGG - chr4_3:49055361-49055380 Msa0644760:intron 25.0%
! TATTGTGTCATGAAATCAAT+CGG - chr4_3:49055933-49055952 Msa0644760:CDS 25.0%
! TGATTGAAATTCCATTATGT+TGG - chr4_3:49055981-49056000 Msa0644760:CDS 25.0%
!!! GTTTTTTTTTTTTTTTGGGG+GGG - chr4_3:49056160-49056179 Msa0644760:CDS 25.0%
!!! TTTTTTTTTTTTTTTGGGGG+GGG - chr4_3:49056161-49056180 Msa0644760:CDS 25.0%
AAAAATCAAGTGTGTTTCGA+TGG - chr4_3:49051937-49051956 Msa0644760:intron 30.0%
! TTTCGATGGTTGCTTAATTT+TGG - chr4_3:49051951-49051970 Msa0644760:intron 30.0%
!! TGATGATTTGTTTCTTGCTA+AGG - chr4_3:49051998-49052017 Msa0644760:CDS 30.0%
! TTTACCAAGGTATCTATGTT+AGG + chr4_3:49052150-49052169 None:intergenic 30.0%
! CAAAGAATCAACTTTTACCA+AGG + chr4_3:49052163-49052182 None:intergenic 30.0%
! CTTGGTAAAAGTTGATTCTT+TGG - chr4_3:49052161-49052180 Msa0644760:intron 30.0%
!! AAAAGTTGATTCTTTGGAGT+TGG - chr4_3:49052167-49052186 Msa0644760:intron 30.0%
!! ATTAGTCATTTTGAGAGTTG+GGG - chr4_3:49052340-49052359 Msa0644760:intron 30.0%
TGTTCTCAAATAAGTTCATG+AGG + chr4_3:49052490-49052509 None:intergenic 30.0%
!!! AATTAGTCCCTTGTTTTGTA+GGG + chr4_3:49052513-49052532 None:intergenic 30.0%
!!! AAATTAGTCCCTTGTTTTGT+AGG + chr4_3:49052514-49052533 None:intergenic 30.0%
TACAAAACAAGGGACTAATT+TGG - chr4_3:49052513-49052532 Msa0644760:intron 30.0%
AATTAGACTTGTATTGCCAA+TGG - chr4_3:49052593-49052612 Msa0644760:intron 30.0%
!! GCCTAATTTTGACAACAAAT+AGG - chr4_3:49052652-49052671 Msa0644760:intron 30.0%
GTTACTATCATCATTCATCA+GGG + chr4_3:49053328-49053347 None:intergenic 30.0%
TGTTACTATCATCATTCATC+AGG + chr4_3:49053329-49053348 None:intergenic 30.0%
GATCCAAATTCAATTGCATT+GGG + chr4_3:49053411-49053430 None:intergenic 30.0%
CTAATCTCTGCTAAAGAATT+TGG + chr4_3:49053522-49053541 None:intergenic 30.0%
TTCAGTTGTTAAAGTCAGTT+TGG + chr4_3:49053934-49053953 None:intergenic 30.0%
AAGCATAAAATCTGCTACAA+TGG + chr4_3:49054275-49054294 None:intergenic 30.0%
!!! TAACCTGAAAAGCATTTTCA+GGG + chr4_3:49054381-49054400 None:intergenic 30.0%
!!! TTAACCTGAAAAGCATTTTC+AGG + chr4_3:49054382-49054401 None:intergenic 30.0%
!!! AATGCTTTTCAGGTTAACAA+CGG - chr4_3:49054385-49054404 Msa0644760:intron 30.0%
TTTCATGCTTGGATAGATAT+TGG - chr4_3:49054439-49054458 Msa0644760:intron 30.0%
! TCTATGCAACGTTTTTACAT+CGG + chr4_3:49054854-49054873 None:intergenic 30.0%
CATGTTCACAACTATATAGT+AGG - chr4_3:49054957-49054976 Msa0644760:intron 30.0%
AACTATATAGTAGGACTGTA+GGG - chr4_3:49054966-49054985 Msa0644760:intron 30.0%
TAGCTAATTTCCAAAGTAAG+CGG + chr4_3:49055145-49055164 None:intergenic 30.0%
! AAGCATAAGCCTGAATTTTA+GGG + chr4_3:49055283-49055302 None:intergenic 30.0%
! TAAGCATAAGCCTGAATTTT+AGG + chr4_3:49055284-49055303 None:intergenic 30.0%
TAGCTGGAATTATTGAACAA+CGG - chr4_3:49055654-49055673 Msa0644760:intron 30.0%
ACATGAATCTTACCATGAAT+AGG - chr4_3:49055844-49055863 Msa0644760:CDS 30.0%
!!! AACCTTAATCCCTTATTTTC+TGG + chr4_3:49055899-49055918 None:intergenic 30.0%
ATTGTGTCATGAAATCAATC+GGG - chr4_3:49055934-49055953 Msa0644760:CDS 30.0%
AATACAACACACCAACATAA+TGG + chr4_3:49055995-49056014 None:intergenic 30.0%
AGAGAAACAAAGTGAAGAAA+AGG + chr4_3:49056289-49056308 None:intergenic 30.0%
GTGACAAAAACAAAACTAAG+GGG + chr4_3:49056313-49056332 None:intergenic 30.0%
CGTGACAAAAACAAAACTAA+GGG + chr4_3:49056314-49056333 None:intergenic 30.0%
ACGTGACAAAAACAAAACTA+AGG + chr4_3:49056315-49056334 None:intergenic 30.0%
!! GATGGTTGCTTAATTTTGGT+GGG - chr4_3:49051955-49051974 Msa0644760:intron 35.0%
!!! TGCTTAATTTTGGTGGGTTT+AGG - chr4_3:49051961-49051980 Msa0644760:intron 35.0%
!!! GCTTAATTTTGGTGGGTTTA+GGG - chr4_3:49051962-49051981 Msa0644760:intron 35.0%
TCAATCATGTAGCACCAAAT+TGG + chr4_3:49052103-49052122 None:intergenic 35.0%
TCTTCCTAACATAGATACCT+TGG - chr4_3:49052143-49052162 Msa0644760:intron 35.0%
! GAGACCAATTTGATAATACG+TGG - chr4_3:49052402-49052421 Msa0644760:intron 35.0%
AATATATGGACCAACTTGAC+AGG - chr4_3:49052428-49052447 Msa0644760:intron 35.0%
TTCCAACTAAGGTAACCTTT+GGG + chr4_3:49052962-49052981 None:intergenic 35.0%
ATTCCAACTAAGGTAACCTT+TGG + chr4_3:49052963-49052982 None:intergenic 35.0%
GTTGGAATGAATCTTATTCG+AGG - chr4_3:49052975-49052994 Msa0644760:intron 35.0%
ATAACAATACCAATGGGGTT+GGG + chr4_3:49053044-49053063 None:intergenic 35.0%
AATAACAATACCAATGGGGT+TGG + chr4_3:49053045-49053064 None:intergenic 35.0%
AATTCAATTGCATTGGGAGT+GGG + chr4_3:49053405-49053424 None:intergenic 35.0%
AAATTCAATTGCATTGGGAG+TGG + chr4_3:49053406-49053425 None:intergenic 35.0%
ACTCCCAATGCAATTGAATT+TGG - chr4_3:49053405-49053424 Msa0644760:CDS 35.0%
GGATCCAAATTCAATTGCAT+TGG + chr4_3:49053412-49053431 None:intergenic 35.0%
TGGATGGATAAAACATGGTT+GGG - chr4_3:49053461-49053480 Msa0644760:CDS 35.0%
TCTCTGCTAAAGAATTTGGA+TGG + chr4_3:49053518-49053537 None:intergenic 35.0%
!! AAACTCTGAAGAAGTACTTG+TGG - chr4_3:49053781-49053800 Msa0644760:intron 35.0%
! TTATGATGGAATGGAGATGT+TGG + chr4_3:49053848-49053867 None:intergenic 35.0%
TACGATTATCTAGATGTGAC+CGG + chr4_3:49053991-49054010 None:intergenic 35.0%
! TAGCAGATTTTATGCTTGTG+TGG - chr4_3:49054278-49054297 Msa0644760:intron 35.0%
TAACTTTGTCAACACTCAAC+AGG - chr4_3:49054487-49054506 Msa0644760:intron 35.0%
CACCATAATGACATTGGTAA+GGG + chr4_3:49054752-49054771 None:intergenic 35.0%
ACACCATAATGACATTGGTA+AGG + chr4_3:49054753-49054772 None:intergenic 35.0%
CAAGAACACCATAATGACAT+TGG + chr4_3:49054758-49054777 None:intergenic 35.0%
!! ACGTTTTTACATCGGTTGAA+AGG + chr4_3:49054846-49054865 None:intergenic 35.0%
GTGAACATGAGTGCAAAATA+TGG + chr4_3:49054946-49054965 None:intergenic 35.0%
CAACTATATAGTAGGACTGT+AGG - chr4_3:49054965-49054984 Msa0644760:intron 35.0%
! AGCATAAGCCTGAATTTTAG+GGG + chr4_3:49055282-49055301 None:intergenic 35.0%
ATTCAGGCTTATGCTTAACT+CGG - chr4_3:49055287-49055306 Msa0644760:intron 35.0%
! TGATAAATCTTTTGCTGACG+AGG - chr4_3:49055455-49055474 Msa0644760:intron 35.0%
!! CACTTAACATGAGCTTGTTT+TGG + chr4_3:49055700-49055719 None:intergenic 35.0%
TGAATCTTACCATGAATAGG+TGG - chr4_3:49055847-49055866 Msa0644760:CDS 35.0%
GAATCTTACCATGAATAGGT+GGG - chr4_3:49055848-49055867 Msa0644760:CDS 35.0%
GTCCAGAAAATAAGGGATTA+AGG - chr4_3:49055894-49055913 Msa0644760:CDS 35.0%
TGGTGATAATTGAAGACTCT+TGG + chr4_3:49056061-49056080 None:intergenic 35.0%
! GAATGATGATGAAGAAGCCA+TGG + chr4_3:49051523-49051542 None:intergenic 40.0%
! TGAAGAAGAGTGGTGGTTTT+GGG + chr4_3:49051580-49051599 None:intergenic 40.0%
! TTGAAGAAGAGTGGTGGTTT+TGG + chr4_3:49051581-49051600 None:intergenic 40.0%
AGGTTGTTGGAATGAGAATG+TGG + chr4_3:49051648-49051667 None:intergenic 40.0%
GATGCATAAATGGCGGTTAT+GGG + chr4_3:49051687-49051706 None:intergenic 40.0%
TACGGAAGTAGGTAAGTCAT+TGG - chr4_3:49051833-49051852 Msa0644760:exon 40.0%
AATCTCTTCACAATCGAACC+CGG + chr4_3:49051906-49051925 None:intergenic 40.0%
! CGATGGTTGCTTAATTTTGG+TGG - chr4_3:49051954-49051973 Msa0644760:intron 40.0%
GTTTCTTGCTAAGGTTGCTA+TGG - chr4_3:49052007-49052026 Msa0644760:CDS 40.0%
! CTGCGTCAGTAACTTTTGTT+AGG - chr4_3:49052251-49052270 Msa0644760:CDS 40.0%
ACTCTGTTAACCTGTCAAGT+TGG + chr4_3:49052441-49052460 None:intergenic 40.0%
TGAGAACACCCTACAAAACA+AGG - chr4_3:49052502-49052521 Msa0644760:intron 40.0%
GAGAACACCCTACAAAACAA+GGG - chr4_3:49052503-49052522 Msa0644760:intron 40.0%
TTCCCAAAGGTTACCTTAGT+TGG - chr4_3:49052957-49052976 Msa0644760:intron 40.0%
TAGCAACTCAGTCGTACTTA+CGG + chr4_3:49053099-49053118 None:intergenic 40.0%
CACAGCTTATCAAATGTCCA+TGG + chr4_3:49053125-49053144 None:intergenic 40.0%
CATGGACATTTGATAAGCTG+TGG - chr4_3:49053123-49053142 Msa0644760:intron 40.0%
ACATTTGATAAGCTGTGGCA+TGG - chr4_3:49053128-49053147 Msa0644760:intron 40.0%
CATTTGATAAGCTGTGGCAT+GGG - chr4_3:49053129-49053148 Msa0644760:intron 40.0%
! TTCATCAGGGTGGATTCAAA+AGG + chr4_3:49053315-49053334 None:intergenic 40.0%
ACTATCATCATTCATCAGGG+TGG + chr4_3:49053325-49053344 None:intergenic 40.0%
GAGTGGGACTAATGTAATGT+TGG + chr4_3:49053389-49053408 None:intergenic 40.0%
GAATTTGGATCCCTTGACTA+AGG - chr4_3:49053420-49053439 Msa0644760:CDS 40.0%
! CCATGTTTTATCCATCCACA+GGG + chr4_3:49053459-49053478 None:intergenic 40.0%
! ACCATGTTTTATCCATCCAC+AGG + chr4_3:49053460-49053479 None:intergenic 40.0%
GTGGATGGATAAAACATGGT+TGG - chr4_3:49053460-49053479 Msa0644760:CDS 40.0%
ATGGATAAAACATGGTTGGG+AGG - chr4_3:49053464-49053483 Msa0644760:CDS 40.0%
TGGATAAAACATGGTTGGGA+GGG - chr4_3:49053465-49053484 Msa0644760:CDS 40.0%
AAAGAATTTGGATGGCCAGT+TGG + chr4_3:49053510-49053529 None:intergenic 40.0%
!! TGGATTAGCTTGTAGCTGAA+TGG + chr4_3:49053914-49053933 None:intergenic 40.0%
! CATTATGTTCTGGACCAAAC+CGG - chr4_3:49053969-49053988 Msa0644760:intron 40.0%
TTATCTAGATGTGACCGGTT+TGG + chr4_3:49053986-49054005 None:intergenic 40.0%
GTTTACATTTCAGACTGCTG+CGG - chr4_3:49054075-49054094 Msa0644760:intron 40.0%
!! ACAGAGAATAGGTGCTATTG+TGG - chr4_3:49054541-49054560 Msa0644760:intron 40.0%
CATAACCATATCTTCTGCAG+CGG - chr4_3:49054626-49054645 Msa0644760:intron 40.0%
GAGCTAAGCTATTTGCAGTT+GGG - chr4_3:49054653-49054672 Msa0644760:intron 40.0%
TAATGACATTGGTAAGGGTC+TGG + chr4_3:49054747-49054766 None:intergenic 40.0%
GACCCTTACCAATGTCATTA+TGG - chr4_3:49054747-49054766 Msa0644760:intron 40.0%
AACTGATAGAGAAAGCAACG+CGG + chr4_3:49054892-49054911 None:intergenic 40.0%
CAAAGCAACAAAAAGCGACA+AGG + chr4_3:49055010-49055029 None:intergenic 40.0%
!!! CTTGTCGCTTTTTGTTGCTT+TGG - chr4_3:49055008-49055027 Msa0644760:intron 40.0%
AACATTGTCACCGCTTACTT+TGG - chr4_3:49055132-49055151 Msa0644760:intron 40.0%
ATTGGATTCCAGCACTCATA+GGG + chr4_3:49055185-49055204 None:intergenic 40.0%
AATTGGATTCCAGCACTCAT+AGG + chr4_3:49055186-49055205 None:intergenic 40.0%
! AGTGCTGGAATCCAATTGAT+TGG - chr4_3:49055189-49055208 Msa0644760:intron 40.0%
CAAGCATCACTTGACCTTAA+AGG + chr4_3:49055257-49055276 None:intergenic 40.0%
TGCTTGTTCCCCTAAAATTC+AGG - chr4_3:49055271-49055290 Msa0644760:intron 40.0%
TTCAGGCTTATGCTTAACTC+GGG - chr4_3:49055288-49055307 Msa0644760:intron 40.0%
!! CATGACTTGCCTTTTCAGAT+TGG - chr4_3:49055390-49055409 Msa0644760:intron 40.0%
! TTGCCTTTTCAGATTGGTAC+TGG - chr4_3:49055396-49055415 Msa0644760:intron 40.0%
ACACCAGTACCAATCTGAAA+AGG + chr4_3:49055402-49055421 None:intergenic 40.0%
!! CAAACGCATTGATTAATGCG+CGG - chr4_3:49055424-49055443 Msa0644760:intron 40.0%
!! GCAACACTCGTTGATAATAC+CGG + chr4_3:49055492-49055511 None:intergenic 40.0%
! TTATCAACGAGTGTTGCCTA+TGG - chr4_3:49055495-49055514 Msa0644760:intron 40.0%
! TATCAACGAGTGTTGCCTAT+GGG - chr4_3:49055496-49055515 Msa0644760:intron 40.0%
AATTGTCTCTGATCTCTACC+AGG - chr4_3:49055621-49055640 Msa0644760:intron 40.0%
ACCAGGTATCAAATTCTAGC+TGG - chr4_3:49055638-49055657 Msa0644760:intron 40.0%
TCCAGCTAGAATTTGATACC+TGG + chr4_3:49055642-49055661 None:intergenic 40.0%
!! ATCTGCTTTGCTGTTAGAAC+CGG - chr4_3:49055722-49055741 Msa0644760:CDS 40.0%
TAGAACCGGAAACACTTTCT+TGG - chr4_3:49055736-49055755 Msa0644760:CDS 40.0%
AGAACCGGAAACACTTTCTT+GGG - chr4_3:49055737-49055756 Msa0644760:CDS 40.0%
ATAATCCACCCACCTATTCA+TGG + chr4_3:49055859-49055878 None:intergenic 40.0%
GGTTGGAGTCCAGAAAATAA+GGG - chr4_3:49055887-49055906 Msa0644760:CDS 40.0%
GATGGAGTGTAGAGAGATTG+GGG + chr4_3:49051494-49051513 None:intergenic 45.0%
GGATGGAGTGTAGAGAGATT+GGG + chr4_3:49051495-49051514 None:intergenic 45.0%
TGGAGAGAGAGAAAGAACGA+GGG + chr4_3:49051557-49051576 None:intergenic 45.0%
TGGAATGAGAATGTGGACGA+CGG + chr4_3:49051641-49051660 None:intergenic 45.0%
GGATGCATAAATGGCGGTTA+TGG + chr4_3:49051688-49051707 None:intergenic 45.0%
! GTTGGTGGATGCATAAATGG+CGG + chr4_3:49051694-49051713 None:intergenic 45.0%
GCCATTTATGCATCCACCAA+CGG - chr4_3:49051693-49051712 Msa0644760:three_prime_UTR 45.0%
! ACCGTTGGTGGATGCATAAA+TGG + chr4_3:49051697-49051716 None:intergenic 45.0%
ATTTATGCATCCACCAACGG+TGG - chr4_3:49051696-49051715 Msa0644760:three_prime_UTR 45.0%
!! AAACAGAGAAGAAGCGTTGC+TGG - chr4_3:49051806-49051825 Msa0644760:three_prime_UTR 45.0%
!! AGAAGCGTTGCTGGTACTTA+CGG - chr4_3:49051815-49051834 Msa0644760:three_prime_UTR 45.0%
TTGCTGGTACTTACGGAAGT+AGG - chr4_3:49051822-49051841 Msa0644760:exon 45.0%
GTCATTGGAGAATTTGCCAG+CGG - chr4_3:49051848-49051867 Msa0644760:CDS 45.0%
GCTAAGGTTGCTATGGAATG+CGG - chr4_3:49052014-49052033 Msa0644760:CDS 45.0%
!! CGGTGTTGGCATCTTTACAA+AGG - chr4_3:49052034-49052053 Msa0644760:CDS 45.0%
CTTGACAGGTTAACAGAGTG+AGG - chr4_3:49052442-49052461 Msa0644760:intron 45.0%
TGTCACGAGTAGATGGAGAT+AGG + chr4_3:49052627-49052646 None:intergenic 45.0%
AGCAACTCAGTCGTACTTAC+GGG + chr4_3:49053098-49053117 None:intergenic 45.0%
AATTCCCTGTTCTCAGCACT+TGG - chr4_3:49053163-49053182 Msa0644760:intron 45.0%
TGTGTGTGACTTTCGTTGCT+AGG - chr4_3:49053186-49053205 Msa0644760:intron 45.0%
GGATCCCTTGACTAAGGTAT+CGG - chr4_3:49053426-49053445 Msa0644760:CDS 45.0%
GAGTCCGATACCTTAGTCAA+GGG + chr4_3:49053433-49053452 None:intergenic 45.0%
CCCTGTGGATGGATAAAACA+TGG - chr4_3:49053456-49053475 Msa0644760:CDS 45.0%
GGATAAAACATGGTTGGGAG+GGG - chr4_3:49053466-49053485 Msa0644760:CDS 45.0%
!! TTTGGTCTTGAACGGGAAAC+AGG - chr4_3:49053652-49053671 Msa0644760:intron 45.0%
TGACCACATGCAAAAACAGC+CGG - chr4_3:49053749-49053768 Msa0644760:intron 45.0%
!!! AAACCGGCTGTTTTTGCATG+TGG + chr4_3:49053755-49053774 None:intergenic 45.0%
!! TGATTTTGTCTGCGCTGATG+TGG - chr4_3:49054135-49054154 Msa0644760:intron 45.0%
! AGCAATAAGTCCAGCACTGA+CGG + chr4_3:49054341-49054360 None:intergenic 45.0%
! CTGCCCTGAAAATGCTTTTC+AGG - chr4_3:49054375-49054394 Msa0644760:intron 45.0%
CTTTGTCAACACTCAACAGG+TGG - chr4_3:49054490-49054509 Msa0644760:intron 45.0%
GGAGCTAAGCTATTTGCAGT+TGG - chr4_3:49054652-49054671 Msa0644760:intron 45.0%
AAGCTATTTGCAGTTGGGAC+TGG - chr4_3:49054658-49054677 Msa0644760:intron 45.0%
ACTCATAGGGAAGTAGAGAG+AGG + chr4_3:49055172-49055191 None:intergenic 45.0%
TATGCTTAACTCGGGTGTCT+TGG - chr4_3:49055296-49055315 Msa0644760:intron 45.0%
! ATCAACGAGTGTTGCCTATG+GGG - chr4_3:49055497-49055516 Msa0644760:intron 45.0%
TGTTGCCTATGGGGTTTACA+TGG - chr4_3:49055506-49055525 Msa0644760:intron 45.0%
TACTGCCATGTAAACCCCAT+AGG + chr4_3:49055514-49055533 None:intergenic 45.0%
TGGCAGTATCTAGCAACTTG+AGG - chr4_3:49055526-49055545 Msa0644760:intron 45.0%
!!! AGCTTGTTTTGGTGCAGCAA+AGG + chr4_3:49055689-49055708 None:intergenic 45.0%
TCTTACCATGAATAGGTGGG+TGG - chr4_3:49055851-49055870 Msa0644760:CDS 45.0%
GGGTTGGAGTCCAGAAAATA+AGG - chr4_3:49055886-49055905 Msa0644760:CDS 45.0%
GATGGATCTTTAACCTTCGC+TGG + chr4_3:49056094-49056113 None:intergenic 45.0%
GATCCATCAACATAGCTAGC+AGG - chr4_3:49056106-49056125 Msa0644760:CDS 45.0%
AGTCCTGCTAGCTATGTTGA+TGG + chr4_3:49056112-49056131 None:intergenic 45.0%
!! TTATTGAAAATATATATAAT+TGG - chr4_3:49053575-49053594 Msa0644760:intron 5.0%
!!! TTATTTAACAAATTTTTTTT+TGG - chr4_3:49053691-49053710 Msa0644760:intron 5.0%
!! ATAAACATATTTAAATTATA+AGG - chr4_3:49053864-49053883 Msa0644760:intron 5.0%
!! AATATATAAACATAAATATA+TGG + chr4_3:49054165-49054184 None:intergenic 5.0%
!! GATTATTATAAAATATAATT+TGG + chr4_3:49054213-49054232 None:intergenic 5.0%
GGGATGGAGTGTAGAGAGAT+TGG + chr4_3:49051496-49051515 None:intergenic 50.0%
TCTCTCTACACTCCATCCCA+TGG - chr4_3:49051497-49051516 Msa0644760:three_prime_UTR 50.0%
GATGAAGAAGCCATGGCCAT+GGG + chr4_3:49051516-49051535 None:intergenic 50.0%
TGATGAAGAAGCCATGGCCA+TGG + chr4_3:49051517-49051536 None:intergenic 50.0%
AGAGAAAGAACGAGGGTGGA+TGG + chr4_3:49051550-49051569 None:intergenic 50.0%
AGAGAGAGAAAGAACGAGGG+TGG + chr4_3:49051554-49051573 None:intergenic 50.0%
GTGGAGAGAGAGAAAGAACG+AGG + chr4_3:49051558-49051577 None:intergenic 50.0%
!!! AGAAGAGTGGTGGTTTTGGG+TGG + chr4_3:49051577-49051596 None:intergenic 50.0%
GAGAGGTTGAAGAAGAGTGG+TGG + chr4_3:49051587-49051606 None:intergenic 50.0%
GGAGAGAGGTTGAAGAAGAG+TGG + chr4_3:49051590-49051609 None:intergenic 50.0%
TGATGGAGAGAGATGGGAGT+GGG + chr4_3:49051611-49051630 None:intergenic 50.0%
! ATGATGGAGAGAGATGGGAG+TGG + chr4_3:49051612-49051631 None:intergenic 50.0%
!! GGGAGATGATGGAGAGAGAT+GGG + chr4_3:49051617-49051636 None:intergenic 50.0%
AATGAGAATGTGGACGACGG+CGG + chr4_3:49051638-49051657 None:intergenic 50.0%
AAATGGCGGTTATGGGAGGA+CGG + chr4_3:49051680-49051699 None:intergenic 50.0%
GCATAAATGGCGGTTATGGG+AGG + chr4_3:49051684-49051703 None:intergenic 50.0%
ATTGGAGAATCAGGTGGCAG+TGG - chr4_3:49051726-49051745 Msa0644760:three_prime_UTR 50.0%
! TGGCGATGATGGTGAATCAG+AGG - chr4_3:49051773-49051792 Msa0644760:three_prime_UTR 50.0%
TTTAGCCGAAGCGGTGAAAG+CGG - chr4_3:49051872-49051891 Msa0644760:intron 50.0%
GTTGCTATGGAATGCGGTGT+TGG - chr4_3:49052020-49052039 Msa0644760:CDS 50.0%
GAGATAGGCGTATGAGCCAT+TGG + chr4_3:49052612-49052631 None:intergenic 50.0%
GCATGTCTGTCACGAGTAGA+TGG + chr4_3:49052634-49052653 None:intergenic 50.0%
TGGGGTTGGGTCTAGCAAAA+CGG + chr4_3:49053031-49053050 None:intergenic 50.0%
TTTGCTAGACCCAACCCCAT+TGG - chr4_3:49053032-49053051 Msa0644760:intron 50.0%
!! CACACCAAGTGCTGAGAACA+GGG + chr4_3:49053170-49053189 None:intergenic 50.0%
!! ACACACCAAGTGCTGAGAAC+AGG + chr4_3:49053171-49053190 None:intergenic 50.0%
CGAGTCCGATACCTTAGTCA+AGG + chr4_3:49053434-49053453 None:intergenic 50.0%
AGGGGAGACTCTACTAAAGG+TGG - chr4_3:49053484-49053503 Msa0644760:intron 50.0%
CTCTACTAAAGGTGGCCAAC+TGG - chr4_3:49053492-49053511 Msa0644760:intron 50.0%
GTCTTGAACGGGAAACAGGA+TGG - chr4_3:49053656-49053675 Msa0644760:intron 50.0%
ATTTCAGACTGCTGCGGAGT+TGG - chr4_3:49054081-49054100 Msa0644760:intron 50.0%
!! ATAAGTCCAGCACTGACGGA+AGG + chr4_3:49054337-49054356 None:intergenic 50.0%
CAACACTCAACAGGTGGCTT+TGG - chr4_3:49054496-49054515 Msa0644760:intron 50.0%
CCATATCTTCTGCAGCGGAA+CGG - chr4_3:49054631-49054650 Msa0644760:intron 50.0%
CTCTACTTCCCTATGAGTGC+TGG - chr4_3:49055174-49055193 Msa0644760:intron 50.0%
!! CGCATTGATTAATGCGCGGA+AGG - chr4_3:49055428-49055447 Msa0644760:intron 50.0%
! ATCTTTTGCTGACGAGGCAG+AGG - chr4_3:49055461-49055480 Msa0644760:intron 50.0%
!! CGAGCCCAAGAAAGTGTTTC+CGG + chr4_3:49055744-49055763 None:intergenic 50.0%
!! TTTTTGGGGGGGGATGATTG+TGG - chr4_3:49056171-49056190 Msa0644760:CDS 50.0%
TCGACTTCCTCTCCACTCCA+CGG - chr4_3:49051460-49051479 Msa0644760:three_prime_UTR 55.0%
GGAGTGTAGAGAGATTGGGG+TGG + chr4_3:49051491-49051510 None:intergenic 55.0%
TACACTCCATCCCATGGCCA+TGG - chr4_3:49051503-49051522 Msa0644760:three_prime_UTR 55.0%
AAGAAGCCATGGCCATGGGA+TGG + chr4_3:49051512-49051531 None:intergenic 55.0%
GAAAGAACGAGGGTGGATGG+TGG + chr4_3:49051547-49051566 None:intergenic 55.0%
!! CGGGAGATGATGGAGAGAGA+TGG + chr4_3:49051618-49051637 None:intergenic 55.0%
ATGAGAATGTGGACGACGGC+GGG + chr4_3:49051637-49051656 None:intergenic 55.0%
ACGGGGAGTGAAGAGGTTGT+TGG + chr4_3:49051661-49051680 None:intergenic 55.0%
AATGGCGGTTATGGGAGGAC+GGG + chr4_3:49051679-49051698 None:intergenic 55.0%
TATGCATCCACCAACGGTGG+CGG - chr4_3:49051699-49051718 Msa0644760:three_prime_UTR 55.0%
GGCGGAATTGGAGAATCAGG+TGG - chr4_3:49051720-49051739 Msa0644760:three_prime_UTR 55.0%
GAATCAGGTGGCAGTGGAAG+CGG - chr4_3:49051732-49051751 Msa0644760:three_prime_UTR 55.0%
TTAGCCGAAGCGGTGAAAGC+GGG - chr4_3:49051873-49051892 Msa0644760:intron 55.0%
CGACTGAGTTGCTAGCTCCA+TGG - chr4_3:49053105-49053124 Msa0644760:intron 55.0%
GGGAGGGGAGACTCTACTAA+AGG - chr4_3:49053481-49053500 Msa0644760:intron 55.0%
GGTGGTCGAAGAGAAACCGT+CGG + chr4_3:49054313-49054332 None:intergenic 55.0%
!! ACTCAACAGGTGGCTTTGGC+TGG - chr4_3:49054500-49054519 Msa0644760:intron 55.0%
CCGTTCCGCTGCAGAAGATA+TGG + chr4_3:49054634-49054653 None:intergenic 55.0%
! AGTTGGGACTGGTGCATCAC+TGG - chr4_3:49054669-49054688 Msa0644760:intron 55.0%
! TGACGAGGCAGAGGAAGTAC+CGG - chr4_3:49055470-49055489 Msa0644760:intron 55.0%
!! GTGGGTGGATTATGCTCGCT+GGG - chr4_3:49055866-49055885 Msa0644760:CDS 55.0%
! GTGGATTATGCTCGCTGGGT+TGG - chr4_3:49055870-49055889 Msa0644760:CDS 55.0%
CTTCCTCTCCACTCCACGGT+CGG - chr4_3:49051464-49051483 Msa0644760:three_prime_UTR 60.0%
GAGAGATGGGAGTGGGAGAG+AGG + chr4_3:49051604-49051623 None:intergenic 60.0%
ATGGCGGTTATGGGAGGACG+GGG + chr4_3:49051678-49051697 None:intergenic 60.0%
GGCGGCGGAATTGGAGAATC+AGG - chr4_3:49051717-49051736 Msa0644760:three_prime_UTR 60.0%
!! GGTGATGGTGGTGGCGATGA+TGG - chr4_3:49051762-49051781 Msa0644760:three_prime_UTR 60.0%
! GCCAGCGGATTTAGCCGAAG+CGG - chr4_3:49051863-49051882 Msa0644760:CDS 60.0%
ACCGCTTCGGCTAAATCCGC+TGG + chr4_3:49051867-49051886 None:intergenic 60.0%
TCGTCCCGCTTTCACCGCTT+CGG + chr4_3:49051880-49051899 None:intergenic 60.0%
GGTGAAAGCGGGACGAGTTC+CGG - chr4_3:49051884-49051903 Msa0644760:intron 60.0%
GTGAAAGCGGGACGAGTTCC+GGG - chr4_3:49051885-49051904 Msa0644760:intron 60.0%
! GGTATCGGACTCGAACCCTG+TGG - chr4_3:49053441-49053460 Msa0644760:CDS 60.0%
TCGGACTCGAACCCTGTGGA+TGG - chr4_3:49053445-49053464 Msa0644760:CDS 60.0%
TGTGTGGCTTCCTGCTCCGA+CGG - chr4_3:49054294-49054313 Msa0644760:intron 60.0%
CGAAGAGAAACCGTCGGAGC+AGG + chr4_3:49054307-49054326 None:intergenic 60.0%
!! AGTCCAGCACTGACGGAAGG+TGG + chr4_3:49054334-49054353 None:intergenic 60.0%
!! GGTGGGTGGATTATGCTCGC+TGG - chr4_3:49055865-49055884 Msa0644760:CDS 60.0%
CCTTCGCTGGACACTATGCG+TGG + chr4_3:49056081-49056100 None:intergenic 60.0%
CCACGCATAGTGTCCAGCGA+AGG - chr4_3:49056078-49056097 Msa0644760:CDS 60.0%
AGATTGGGGTGGACCGACCG+TGG + chr4_3:49051480-49051499 None:intergenic 65.0%
TGGACGACGGCGGGAGATGA+TGG + chr4_3:49051628-49051647 None:intergenic 65.0%
TGGGAGGACGGGGAGTGAAG+AGG + chr4_3:49051668-49051687 None:intergenic 65.0%
AATTCCGCCGCCACCGTTGG+TGG + chr4_3:49051709-49051728 None:intergenic 65.0%
! ACCAACGGTGGCGGCGGAAT+TGG - chr4_3:49051708-49051727 Msa0644760:three_prime_UTR 65.0%
TCCAATTCCGCCGCCACCGT+TGG + chr4_3:49051712-49051731 None:intergenic 65.0%
TCAGGTGGCAGTGGAAGCGG+TGG - chr4_3:49051735-49051754 Msa0644760:three_prime_UTR 65.0%
GGAAGCGGTGGAGGAGGTGA+TGG - chr4_3:49051747-49051766 Msa0644760:three_prime_UTR 65.0%
! AGCGGTGGAGGAGGTGATGG+TGG - chr4_3:49051750-49051769 Msa0644760:three_prime_UTR 65.0%
!! GGTGGAGGAGGTGATGGTGG+TGG - chr4_3:49051753-49051772 Msa0644760:three_prime_UTR 65.0%
!! CCAGCACTGACGGAAGGTGG+TGG + chr4_3:49054331-49054350 None:intergenic 65.0%
CCACCACCTTCCGTCAGTGC+TGG - chr4_3:49054328-49054347 Msa0644760:intron 65.0%
GGACCGACCGTGGAGTGGAG+AGG + chr4_3:49051470-49051489 None:intergenic 70.0%
! GCATCCACCAACGGTGGCGG+CGG - chr4_3:49051702-49051721 Msa0644760:three_prime_UTR 70.0%
GGTGGCAGTGGAAGCGGTGG+AGG - chr4_3:49051738-49051757 Msa0644760:three_prime_UTR 70.0%
GGCAGTGGAAGCGGTGGAGG+AGG - chr4_3:49051741-49051760 Msa0644760:three_prime_UTR 70.0%
GGGGTGGACCGACCGTGGAG+TGG + chr4_3:49051475-49051494 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49051404 49056348 49051404 ID=Msa0644760;Name=Msa0644760
chr4_3 mRNA 49051404 49056348 49051404 ID=Msa0644760-mRNA-1;Parent=Msa0644760;Name=Msa0644760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=112|1|1|1|1|1|8|434|384
chr4_3 exon 49051404 49051886 49051404 ID=Msa0644760-mRNA-1:exon:11656;Parent=Msa0644760-mRNA-1
chr4_3 exon 49051984 49052109 49051984 ID=Msa0644760-mRNA-1:exon:11655;Parent=Msa0644760-mRNA-1
chr4_3 exon 49052205 49052344 49052205 ID=Msa0644760-mRNA-1:exon:11654;Parent=Msa0644760-mRNA-1
chr4_3 exon 49053062 49053106 49053062 ID=Msa0644760-mRNA-1:exon:11653;Parent=Msa0644760-mRNA-1
chr4_3 exon 49053190 49053243 49053190 ID=Msa0644760-mRNA-1:exon:11652;Parent=Msa0644760-mRNA-1
chr4_3 exon 49053356 49053487 49053356 ID=Msa0644760-mRNA-1:exon:11651;Parent=Msa0644760-mRNA-1
chr4_3 exon 49053596 49053664 49053596 ID=Msa0644760-mRNA-1:exon:11650;Parent=Msa0644760-mRNA-1
chr4_3 exon 49055697 49056348 49055697 ID=Msa0644760-mRNA-1:exon:11649;Parent=Msa0644760-mRNA-1
chr4_3 five_prime_UTR 49056237 49056348 49056237 ID=Msa0644760-mRNA-1:five_prime_utr;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49055697 49056236 49055697 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49053596 49053664 49053596 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49053356 49053487 49053356 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49053190 49053243 49053190 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49053062 49053106 49053062 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49052205 49052344 49052205 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49051984 49052109 49051984 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 CDS 49051838 49051886 49051838 ID=Msa0644760-mRNA-1:cds;Parent=Msa0644760-mRNA-1
chr4_3 three_prime_UTR 49051404 49051837 49051404 ID=Msa0644760-mRNA-1:three_prime_utr;Parent=Msa0644760-mRNA-1
Gene Sequence

>Msa0644760

ATGGCCATGGCTTCTTCATCATCATTCTCCACCATCCACCCTCGTTCTTTCTCTCTCTCCACCCAAAACCACCACTCTTCTTCAACCTCTCTCCCACTCCCATCTCTCTCCATCATCTCCCGCCGTCGTCCACATTCTCATTCCAACAACCTCTTCACTCCCCGTCCTCCCATAACCGCCATTTATGCATCCACCAACGGTGGCGGCGGAATTGGAGAATCAGGTGGCAGTGGAAGCGGTGGAGGAGGTGATGGTGGTGGCGATGATGGTGAATCAGAGGATAGAGATCGAAACAGAGAAGAAGCGTTGCTGGTACTTACGGAAGTAGGTAAGTCATTGGAGAATTTGCCAGCGGATTTAGCCGAAGCGGTGAAAGCGGGACGAGTTCCGGGTTCGATTGTGAAGAGATTCTTTGAGCTGCAAAAATCAAGTGTGTTTCGATGGTTGCTTAATTTTGGTGGGTTTAGGGAAAGATTGCTTGCTGATGATTTGTTTCTTGCTAAGGTTGCTATGGAATGCGGTGTTGGCATCTTTACAAAGACTGCTGCGGAGTTGGAGAAGCGAAAAGAAAACTTTACTAAAGAACTTGATTTTGTCTGCGCTGATGTGGTAATGGCCATTGTAGCAGATTTTATGCTTGTGTGGCTTCCTGCTCCGACGGTTTCTCTTCGACCACCACCTTCCGTCAGTGCTGGACTTATTGCTAAATTCTTCTTCGGCTGCCCTGAAAATGCTTTTCAGGTGGCTTTGGCTGGAACGTCATATTCACTTATACAGAGAATAGGTGCTATTGTGCGGAACGGAGCTAAGCTATTTGCAGTTGGGACTGGTGCATCACTGATTGGTACTGGTGTAACAAACGCATTGATTAATGCGCGGAAGGTTGTTGATAAATCTTTTGCTGACGAGGCAGAGGAAGTACCGGTATTATCAACGAGTGTTGCCTATGGGGTTTACATGGCAGTATCTAGCAACTTGAGGTATCAAATTCTAGCTGGAATTATTGAACAACGGATTTTAGATCCTTTGCTGCACCAAAACAAGCTCATGTTAAGTGCAATCTGCTTTGCTGTTAGAACCGGAAACACTTTCTTGGGCTCGCTATTGTGGGTGGATTATGCTCGCTGGGTTGGAGTCCAGAAAATAAGGGATTAA

Protein sequence

>Msa0644760

MAMASSSSFSTIHPRSFSLSTQNHHSSSTSLPLPSLSIISRRRPHSHSNNLFTPRPPITAIYASTNGGGGIGESGGSGSGGGGDGGGDDGESEDRDRNREEALLVLTEVGKSLENLPADLAEAVKAGRVPGSIVKRFFELQKSSVFRWLLNFGGFRERLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWLPAPTVSLRPPPSVSAGLIAKFFFGCPENAFQVALAGTSYSLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNALINARKVVDKSFADEAEEVPVLSTSVAYGVYMAVSSNLRYQILAGIIEQRILDPLLHQNKLMLSAICFAVRTGNTFLGSLLWVDYARWVGVQKIRD*