Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024000 | sp|Q9SVD0|SMXL3_ARATH | 53.584 | 851 | 308 | 22 | 1 | 804 | 1 | 811 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0024000 | 0.858056 | 1.070573e-62 | -8.615850e-47 |
| Msa0001940 | Msa0024000 | 0.821418 | 4.081570e-53 | -8.615850e-47 |
| Msa0001960 | Msa0024000 | 0.804948 | 1.690814e-49 | -8.615850e-47 |
| Msa0002580 | Msa0024000 | 0.847353 | 1.219989e-59 | -8.615850e-47 |
| Msa0017950 | Msa0024000 | 0.809469 | 1.863557e-50 | -8.615850e-47 |
| Msa0024000 | Msa0042640 | 0.807914 | 4.005430e-50 | -8.615850e-47 |
| Msa0024000 | Msa0077340 | 0.807636 | 4.587837e-50 | -8.615850e-47 |
| Msa0024000 | Msa0081520 | 0.807255 | 5.527171e-50 | -8.615850e-47 |
| Msa0024000 | Msa0094780 | 0.823820 | 1.127170e-53 | -8.615850e-47 |
| Msa0024000 | Msa0106620 | 0.800108 | 1.682513e-48 | -8.615850e-47 |
| Msa0024000 | Msa0108410 | 0.851896 | 6.584627e-61 | -8.615850e-47 |
| Msa0024000 | Msa0174450 | 0.846940 | 1.583768e-59 | -8.615850e-47 |
| Msa0024000 | Msa0221000 | 0.852280 | 5.121304e-61 | -8.615850e-47 |
| Msa0024000 | Msa0225100 | 0.840262 | 9.665647e-58 | -8.615850e-47 |
| Msa0024000 | Msa0225220 | 0.804096 | 2.545194e-49 | -8.615850e-47 |
| Msa0024000 | Msa0225860 | 0.833121 | 6.395061e-56 | -8.615850e-47 |
| Msa0024000 | Msa0237210 | 0.806581 | 7.673874e-50 | -8.615850e-47 |
| Msa0024000 | Msa0240900 | 0.812302 | 4.538664e-51 | -8.615850e-47 |
| Msa0024000 | Msa0244640 | 0.856396 | 3.310008e-62 | -8.615850e-47 |
| Msa0024000 | Msa0258310 | 0.808085 | 3.682009e-50 | -8.615850e-47 |
| Msa0024000 | Msa0260510 | 0.805466 | 1.317073e-49 | -8.615850e-47 |
| Msa0024000 | Msa0266180 | 0.819387 | 1.193211e-52 | -8.615850e-47 |
| Msa0024000 | Msa0283330 | 0.841588 | 4.338931e-58 | -8.615850e-47 |
| Msa0024000 | Msa0287740 | 0.828899 | 6.957018e-55 | -8.615850e-47 |
| Msa0024000 | Msa0297790 | 0.802518 | 5.402192e-49 | -8.615850e-47 |
| Msa0024000 | Msa0300270 | 0.813128 | 2.993940e-51 | -8.615850e-47 |
| Msa0024000 | Msa0300320 | 0.815912 | 7.247996e-52 | -8.615850e-47 |
| Msa0024000 | Msa0307270 | 0.842262 | 2.878727e-58 | -8.615850e-47 |
| Msa0024000 | Msa0315690 | 0.804642 | 1.958137e-49 | -8.615850e-47 |
| Msa0024000 | Msa0321620 | 0.842073 | 3.229490e-58 | -8.615850e-47 |
| Msa0024000 | Msa0337700 | 0.827293 | 1.694504e-54 | -8.615850e-47 |
| Msa0024000 | Msa0338210 | 0.802073 | 6.669909e-49 | -8.615850e-47 |
| Msa0024000 | Msa0342010 | 0.806300 | 8.793771e-50 | -8.615850e-47 |
| Msa0024000 | Msa0360210 | 0.820382 | 7.065250e-53 | -8.615850e-47 |
| Msa0024000 | Msa0367870 | 0.811799 | 5.843765e-51 | -8.615850e-47 |
| Msa0024000 | Msa0369790 | 0.805748 | 1.149285e-49 | -8.615850e-47 |
| Msa0024000 | Msa0378720 | 0.836530 | 8.868388e-57 | -8.615850e-47 |
| Msa0024000 | Msa0403640 | 0.849414 | 3.284603e-60 | -8.615850e-47 |
| Msa0024000 | Msa0406770 | 0.819055 | 1.419707e-52 | -8.615850e-47 |
| Msa0024000 | Msa0425170 | 0.810504 | 1.115179e-50 | -8.615850e-47 |
| Msa0024000 | Msa0428370 | 0.839557 | 1.475750e-57 | -8.615850e-47 |
| Msa0024000 | Msa0428920 | 0.818234 | 2.179860e-52 | -8.615850e-47 |
| Msa0024000 | Msa0436910 | 0.844513 | 7.218461e-59 | -8.615850e-47 |
| Msa0024000 | Msa0450400 | -0.805279 | 1.441504e-49 | -8.615850e-47 |
| Msa0024000 | Msa0464000 | 0.802002 | 6.898977e-49 | -8.615850e-47 |
| Msa0024000 | Msa0474730 | 0.843744 | 1.160428e-58 | -8.615850e-47 |
| Msa0024000 | Msa0476650 | 0.816094 | 6.600373e-52 | -8.615850e-47 |
| Msa0024000 | Msa0509550 | 0.803241 | 3.829341e-49 | -8.615850e-47 |
| Msa0024000 | Msa0519750 | 0.811235 | 7.746913e-51 | -8.615850e-47 |
| Msa0024000 | Msa0519820 | 0.803657 | 3.139330e-49 | -8.615850e-47 |
| Msa0024000 | Msa0519830 | 0.813787 | 2.144661e-51 | -8.615850e-47 |
| Msa0024000 | Msa0528570 | 0.815660 | 8.249794e-52 | -8.615850e-47 |
| Msa0024000 | Msa0529030 | 0.813089 | 3.053043e-51 | -8.615850e-47 |
| Msa0024000 | Msa0529890 | 0.806914 | 6.526329e-50 | -8.615850e-47 |
| Msa0024000 | Msa0534720 | 0.815809 | 7.644481e-52 | -8.615850e-47 |
| Msa0024000 | Msa0580370 | 0.807265 | 5.500897e-50 | -8.615850e-47 |
| Msa0024000 | Msa0581470 | 0.813252 | 2.811751e-51 | -8.615850e-47 |
| Msa0024000 | Msa0583360 | -0.849301 | 3.530194e-60 | -8.615850e-47 |
| Msa0024000 | Msa0585560 | 0.802494 | 5.462550e-49 | -8.615850e-47 |
| Msa0024000 | Msa0611210 | 0.833041 | 6.695976e-56 | -8.615850e-47 |
| Msa0024000 | Msa0624420 | 0.817250 | 3.635840e-52 | -8.615850e-47 |
| Msa0024000 | Msa0625720 | 0.807158 | 5.795054e-50 | -8.615850e-47 |
| Msa0024000 | Msa0626450 | 0.812634 | 3.840929e-51 | -8.615850e-47 |
| Msa0024000 | Msa0626490 | 0.810245 | 1.268589e-50 | -8.615850e-47 |
| Msa0024000 | Msa0651550 | 0.820990 | 5.120781e-53 | -8.615850e-47 |
| Msa0024000 | Msa0664600 | 0.815137 | 1.078481e-51 | -8.615850e-47 |
| Msa0024000 | Msa0693890 | 0.805094 | 1.575799e-49 | -8.615850e-47 |
| Msa0024000 | Msa0701700 | 0.819908 | 9.071572e-53 | -8.615850e-47 |
| Msa0024000 | Msa0711430 | 0.819525 | 1.109377e-52 | -8.615850e-47 |
| Msa0024000 | Msa0715060 | 0.807102 | 5.954917e-50 | -8.615850e-47 |
| Msa0024000 | Msa0727640 | 0.801229 | 9.935308e-49 | -8.615850e-47 |
| Msa0024000 | Msa0729270 | 0.819178 | 1.330949e-52 | -8.615850e-47 |
| Msa0024000 | Msa0733010 | 0.825957 | 3.529891e-54 | -8.615850e-47 |
| Msa0024000 | Msa0736960 | 0.803803 | 2.928459e-49 | -8.615850e-47 |
| Msa0024000 | Msa0741220 | 0.838469 | 2.823281e-57 | -8.615850e-47 |
| Msa0024000 | Msa0778590 | 0.847803 | 9.178745e-60 | -8.615850e-47 |
| Msa0024000 | Msa0795070 | 0.803480 | 3.416010e-49 | -8.615850e-47 |
| Msa0024000 | Msa0795870 | 0.813587 | 2.374091e-51 | -8.615850e-47 |
| Msa0024000 | Msa0815960 | 0.823533 | 1.316305e-53 | -8.615850e-47 |
| Msa0024000 | Msa0829300 | 0.826728 | 2.313061e-54 | -8.615850e-47 |
| Msa0024000 | Msa0829330 | 0.832478 | 9.239026e-56 | -8.615850e-47 |
| Msa0024000 | Msa0832120 | 0.822655 | 2.109448e-53 | -8.615850e-47 |
| Msa0024000 | Msa0833530 | 0.829431 | 5.166866e-55 | -8.615850e-47 |
| Msa0024000 | Msa0833650 | 0.811738 | 6.025526e-51 | -8.615850e-47 |
| Msa0024000 | Msa0835490 | 0.825890 | 3.661519e-54 | -8.615850e-47 |
| Msa0024000 | Msa0855870 | 0.813693 | 2.249294e-51 | -8.615850e-47 |
| Msa0024000 | Msa0861510 | 0.810658 | 1.033317e-50 | -8.615850e-47 |
| Msa0024000 | Msa0861600 | 0.825401 | 4.782058e-54 | -8.615850e-47 |
| Msa0024000 | Msa0866520 | 0.811917 | 5.507099e-51 | -8.615850e-47 |
| Msa0024000 | Msa0875290 | 0.823640 | 1.242093e-53 | -8.615850e-47 |
| Msa0024000 | Msa0902510 | 0.804157 | 2.471949e-49 | -8.615850e-47 |
| Msa0024000 | Msa0967870 | 0.839073 | 1.971011e-57 | -8.615850e-47 |
| Msa0024000 | Msa1004800 | 0.807244 | 5.557194e-50 | -8.615850e-47 |
| Msa0024000 | Msa1020510 | 0.800858 | 1.182943e-48 | -8.615850e-47 |
| Msa0024000 | Msa1034500 | 0.816101 | 6.577427e-52 | -8.615850e-47 |
| Msa0024000 | Msa1066670 | 0.807522 | 4.850317e-50 | -8.615850e-47 |
| Msa0024000 | Msa1072940 | 0.831873 | 1.303907e-55 | -8.615850e-47 |
| Msa0024000 | Msa1080640 | 0.811378 | 7.214079e-51 | -8.615850e-47 |
| Msa0024000 | Msa1085330 | 0.800880 | 1.170955e-48 | -8.615850e-47 |
| Msa0024000 | Msa1089450 | 0.806014 | 1.010574e-49 | -8.615850e-47 |
| Msa0024000 | Msa1096960 | 0.818585 | 1.815419e-52 | -8.615850e-47 |
| Msa0024000 | Msa1101090 | 0.802226 | 6.202594e-49 | -8.615850e-47 |
| Msa0024000 | Msa1111380 | 0.825673 | 4.123299e-54 | -8.615850e-47 |
| Msa0024000 | Msa1132840 | 0.813003 | 3.188825e-51 | -8.615850e-47 |
| Msa0024000 | Msa1145810 | 0.829086 | 6.267546e-55 | -8.615850e-47 |
| Msa0024000 | Msa1155170 | -0.850645 | 1.485686e-60 | -8.615850e-47 |
| Msa0024000 | Msa1160920 | 0.831434 | 1.672889e-55 | -8.615850e-47 |
| Msa0024000 | Msa1184890 | 0.806623 | 7.517594e-50 | -8.615850e-47 |
| Msa0024000 | Msa1199570 | 0.809027 | 2.317855e-50 | -8.615850e-47 |
| Msa0024000 | Msa1208950 | 0.812186 | 4.811453e-51 | -8.615850e-47 |
| Msa0024000 | Msa1225860 | -0.854305 | 1.344381e-61 | -8.615850e-47 |
| Msa0024000 | Msa1228200 | 0.817098 | 3.931914e-52 | -8.615850e-47 |
| Msa0024000 | Msa1238820 | 0.824241 | 8.981709e-54 | -8.615850e-47 |
| Msa0024000 | Msa1265650 | 0.843898 | 1.055794e-58 | -8.615850e-47 |
| Msa0024000 | Msa1277220 | 0.808533 | 2.955591e-50 | -8.615850e-47 |
| Msa0024000 | Msa1297230 | 0.810121 | 1.349086e-50 | -8.615850e-47 |
| Msa0024000 | Msa1303560 | 0.848754 | 5.011701e-60 | -8.615850e-47 |
| Msa0024000 | Msa1303650 | 0.841480 | 4.633066e-58 | -8.615850e-47 |
| Msa0024000 | Msa1307560 | 0.821128 | 4.759758e-53 | -8.615850e-47 |
| Msa0024000 | Msa1328710 | 0.804148 | 2.482044e-49 | -8.615850e-47 |
| Msa0024000 | Msa1330420 | 0.824184 | 9.259631e-54 | -8.615850e-47 |
| Msa0024000 | Msa1340200 | 0.810209 | 1.291315e-50 | -8.615850e-47 |
| Msa0024000 | Msa1341840 | 0.805091 | 1.577980e-49 | -8.615850e-47 |
| Msa0024000 | Msa1343430 | 0.815265 | 1.009892e-51 | -8.615850e-47 |
| Msa0024000 | Msa1345810 | 0.814175 | 1.761280e-51 | -8.615850e-47 |
| Msa0024000 | Msa1348090 | 0.832018 | 1.200760e-55 | -8.615850e-47 |
| Msa0024000 | Msa1355450 | 0.817868 | 2.637940e-52 | -8.615850e-47 |
| Msa0024000 | Msa1356830 | 0.804806 | 1.809735e-49 | -8.615850e-47 |
| Msa0024000 | Msa1368430 | 0.802982 | 4.332171e-49 | -8.615850e-47 |
| Msa0024000 | Msa1372040 | 0.812186 | 4.812639e-51 | -8.615850e-47 |
| Msa0024000 | Msa1382400 | 0.803522 | 3.349085e-49 | -8.615850e-47 |
| Msa0024000 | Msa1397400 | 0.822410 | 2.403955e-53 | -8.615850e-47 |
| Msa0024000 | Msa1405460 | 0.814011 | 1.914517e-51 | -8.615850e-47 |
| Msa0024000 | Msa1415540 | 0.807875 | 4.081976e-50 | -8.615850e-47 |
| Msa0024000 | Msa1425880 | 0.824046 | 9.978364e-54 | -8.615850e-47 |
| Msa0024000 | Msa1427100 | 0.813219 | 2.859014e-51 | -8.615850e-47 |
| Msa0024000 | Msa1433810 | 0.833237 | 5.983419e-56 | -8.615850e-47 |
| Msa0024000 | Msa1440310 | 0.824727 | 6.902569e-54 | -8.615850e-47 |
| Msa0024000 | Msa1440960 | 0.808049 | 3.747709e-50 | -8.615850e-47 |
| Msa0024000 | Msa1452710 | 0.809800 | 1.582188e-50 | -8.615850e-47 |
| Msa0024000 | Msa1464090 | 0.800589 | 1.342379e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024000 | MtrunA17_Chr1g0177421 | 96.035 | 807 | 32 | 0 | 1 | 807 | 1 | 807 | 0.0 | 1615 |
| Msa0024000 | MtrunA17_Chr1g0197121 | 51.068 | 515 | 211 | 12 | 1 | 488 | 1 | 501 | 1.45e-155 | 475 |
| Msa0024000 | MtrunA17_Chr1g0197121 | 45.522 | 268 | 117 | 9 | 548 | 803 | 597 | 847 | 4.35e-51 | 192 |
| Msa0024000 | MtrunA17_Chr2g0298801 | 34.165 | 802 | 390 | 28 | 1 | 708 | 1 | 758 | 3.05e-101 | 336 |
| Msa0024000 | MtrunA17_Chr4g0073021 | 31.368 | 848 | 429 | 23 | 1 | 731 | 1 | 812 | 1.17e-100 | 335 |
| Msa0024000 | MtrunA17_Chr4g0071701 | 62.567 | 187 | 50 | 5 | 1 | 177 | 1 | 177 | 2.52e-59 | 216 |
| Msa0024000 | MtrunA17_Chr3g0105051 | 26.208 | 538 | 303 | 20 | 1 | 478 | 1 | 504 | 9.75e-29 | 124 |
| Msa0024000 | MtrunA17_Chr3g0105051 | 27.197 | 239 | 162 | 5 | 501 | 735 | 613 | 843 | 6.81e-14 | 75.9 |
| Msa0024000 | MtrunA17_Chr3g0113631 | 29.455 | 404 | 232 | 15 | 1 | 380 | 1 | 375 | 1.32e-28 | 123 |
| Msa0024000 | MtrunA17_Chr3g0113631 | 29.714 | 175 | 109 | 3 | 561 | 735 | 686 | 846 | 1.08e-13 | 75.5 |
| Msa0024000 | MtrunA17_Chr5g0430201 | 29.327 | 416 | 224 | 13 | 1 | 385 | 1 | 377 | 1.33e-26 | 117 |
| Msa0024000 | MtrunA17_Chr5g0430201 | 27.111 | 225 | 157 | 4 | 510 | 731 | 625 | 845 | 3.57e-14 | 77.0 |
| Msa0024000 | MtrunA17_Chr4g0061371 | 28.571 | 301 | 181 | 11 | 26 | 320 | 20 | 292 | 1.43e-22 | 103 |
| Msa0024000 | MtrunA17_Chr7g0225161 | 26.117 | 291 | 182 | 9 | 23 | 308 | 17 | 279 | 2.06e-16 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024000 | AT3G52490.1 | 53.584 | 851 | 308 | 22 | 1 | 804 | 1 | 811 | 0.0 | 791 |
| Msa0024000 | AT4G29920.2 | 34.211 | 798 | 391 | 31 | 1 | 697 | 1 | 765 | 5.44e-96 | 322 |
| Msa0024000 | AT5G57130.1 | 32.854 | 834 | 370 | 31 | 1 | 697 | 1 | 781 | 2.50e-95 | 320 |
| Msa0024000 | AT5G57710.1 | 30.984 | 894 | 446 | 30 | 1 | 780 | 1 | 837 | 7.90e-95 | 318 |
| Msa0024000 | AT4G30350.1 | 32.688 | 826 | 404 | 18 | 1 | 765 | 1 | 735 | 4.21e-94 | 315 |
| Msa0024000 | AT4G29920.1 | 34.085 | 798 | 389 | 32 | 1 | 697 | 1 | 762 | 1.00e-93 | 316 |
| Msa0024000 | AT2G29970.1 | 24.390 | 943 | 528 | 35 | 1 | 805 | 1 | 896 | 1.73e-49 | 189 |
| Msa0024000 | AT1G07200.2 | 24.331 | 822 | 478 | 27 | 1 | 731 | 1 | 769 | 6.39e-49 | 187 |
| Msa0024000 | AT2G40130.2 | 25.732 | 785 | 439 | 25 | 1 | 734 | 1 | 692 | 7.25e-47 | 181 |
| Msa0024000 | AT2G40130.1 | 25.700 | 786 | 435 | 26 | 1 | 734 | 1 | 689 | 1.17e-45 | 177 |
| Msa0024000 | AT1G74310.2 | 29.355 | 310 | 179 | 11 | 20 | 320 | 14 | 292 | 6.76e-21 | 99.0 |
| Msa0024000 | AT1G74310.1 | 29.355 | 310 | 179 | 11 | 20 | 320 | 14 | 292 | 7.73e-21 | 99.0 |
Find 127 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTTCTCTTTCTGATTT+TGG | 0.071320 | 1_1:-46055015 | Msa0024000:CDS |
| AAAGATTCTCTTCAAATTTC+AGG | 0.131153 | 1_1:-46052334 | Msa0024000:CDS |
| CATTGGTATTGGATCCAATT+AGG | 0.134783 | 1_1:-46055203 | Msa0024000:CDS |
| GGATATTATGTACTTCTTTA+AGG | 0.140522 | 1_1:+46055844 | None:intergenic |
| TCACTAGAAGAGGTTGAATT+AGG | 0.183959 | 1_1:+46053122 | None:intergenic |
| GATAATGGAGATTGGAAAAT+TGG | 0.186851 | 1_1:-46054821 | Msa0024000:CDS |
| ATCCATCACTCGAGACTATT+TGG | 0.210566 | 1_1:-46054717 | Msa0024000:CDS |
| TCTTGAGATGATCTTTGTTT+TGG | 0.222106 | 1_1:+46052501 | None:intergenic |
| ATGCAATGCTTTGGAGAAAA+AGG | 0.237090 | 1_1:-46053036 | Msa0024000:CDS |
| TGTTGAACAAGCTGTTTCTT+TGG | 0.237988 | 1_1:-46055313 | Msa0024000:CDS |
| TTGATATCCTCAACCCTAAT+TGG | 0.254500 | 1_1:+46055189 | None:intergenic |
| GATAGATTGGTGGATGAAAT+TGG | 0.256106 | 1_1:-46052378 | Msa0024000:CDS |
| GACAAGTTCTTATGTTTCTT+TGG | 0.259034 | 1_1:-46052439 | Msa0024000:CDS |
| TATATCTTGGAGATCTAAAA+TGG | 0.284363 | 1_1:-46054906 | Msa0024000:CDS |
| AGTTTCCCGTTCTCATCTTT+AGG | 0.285635 | 1_1:+46055823 | None:intergenic |
| TGTACTTATATTGGAAGATT+TGG | 0.294708 | 1_1:-46052723 | Msa0024000:CDS |
| GAAGCAAGTTGTACTTATAT+TGG | 0.295959 | 1_1:-46052732 | Msa0024000:CDS |
| TCCTTTGGATCACATGATAA+TGG | 0.304776 | 1_1:-46054836 | Msa0024000:CDS |
| GAGATTGGAAAATTGGTTAA+TGG | 0.306808 | 1_1:-46054814 | Msa0024000:CDS |
| TTCCAACAAAACATTGGTAT+TGG | 0.316636 | 1_1:-46055214 | Msa0024000:CDS |
| ACTCTTGAAGGTGTAGTTAA+AGG | 0.320099 | 1_1:-46055099 | Msa0024000:CDS |
| ATCACCTCTTTGCATTTCTT+AGG | 0.326998 | 1_1:-46052229 | Msa0024000:three_prime_UTR |
| AGAAAGAGTATTGTTATTGT+TGG | 0.333319 | 1_1:-46055135 | Msa0024000:CDS |
| ATTGGTATTGGATCCAATTA+GGG | 0.341559 | 1_1:-46055202 | Msa0024000:CDS |
| CACTAGAAGAGGTTGAATTA+GGG | 0.358043 | 1_1:+46053123 | None:intergenic |
| TTTCACAAATTGGTTTCAAA+AGG | 0.364259 | 1_1:-46052635 | Msa0024000:CDS |
| TGATATTAATGTTGCTACTT+TGG | 0.366558 | 1_1:-46052466 | Msa0024000:CDS |
| AGTAGGGTTATGAGAGAAGC+AGG | 0.368227 | 1_1:-46055363 | Msa0024000:CDS |
| GTAATGGAAAAGTTTGATAA+AGG | 0.370950 | 1_1:-46055075 | Msa0024000:CDS |
| TATTGAAATGAAATTATTGT+AGG | 0.371269 | 1_1:+46052824 | None:intergenic |
| CATGGCCACGACGCTTTGCT+AGG | 0.373812 | 1_1:+46055742 | None:intergenic |
| CAATGTCAAGTAATCCTCAT+AGG | 0.380093 | 1_1:-46052695 | Msa0024000:CDS |
| TTGGAGAATGTGGAAAGTTT+TGG | 0.380920 | 1_1:-46054789 | Msa0024000:CDS |
| TATTGAGAAAGGAAGAGTTT+TGG | 0.384658 | 1_1:-46052610 | Msa0024000:CDS |
| ATATCAACTATCTTTGTTCC+AGG | 0.387365 | 1_1:-46052149 | Msa0024000:three_prime_UTR |
| TAGAGGCTATTATTGTCCTT+TGG | 0.388662 | 1_1:-46054851 | Msa0024000:CDS |
| ACTAAAGCATTTGAGATAGA+AGG | 0.391727 | 1_1:+46055513 | None:intergenic |
| TAGATGACCCTAGTGTTAGT+AGG | 0.393635 | 1_1:-46055380 | Msa0024000:CDS |
| TTCTAGTGACCTTGTGCAAA+TGG | 0.396262 | 1_1:-46053108 | Msa0024000:CDS |
| TCGCTTTGTGACACATTGTT+AGG | 0.398289 | 1_1:+46053203 | None:intergenic |
| TGTTTGCAGCTTCTGTGGTT+AGG | 0.399281 | 1_1:+46055784 | None:intergenic |
| GAGGTTGAATTAGGGTTTGA+AGG | 0.406776 | 1_1:+46053131 | None:intergenic |
| GATGTTGATGAATCTCTTAA+AGG | 0.407630 | 1_1:-46055051 | Msa0024000:CDS |
| GGAAAATTGGTTAATGGTGT+TGG | 0.413845 | 1_1:-46054808 | Msa0024000:CDS |
| AAAACCGTACTTGCAATTTC+CGG | 0.419364 | 1_1:+46052990 | None:intergenic |
| GATCACATGATAATGGAGAT+TGG | 0.425283 | 1_1:-46054829 | Msa0024000:CDS |
| TCCGGAATGGTGAAAAGAAA+AGG | 0.429488 | 1_1:-46052957 | Msa0024000:CDS |
| CTTCCAGCAGGTATAGTGAT+AGG | 0.437040 | 1_1:+46054685 | None:intergenic |
| AAGAAACAAGGGATGATTAG+AGG | 0.439979 | 1_1:-46054868 | Msa0024000:CDS |
| TCACCTTCTTCATCTACATC+AGG | 0.443123 | 1_1:-46053251 | Msa0024000:CDS |
| GACTTTCCACTCATAGAAGA+AGG | 0.446298 | 1_1:+46055285 | None:intergenic |
| TTACGATGAGGATGATAGAT+TGG | 0.450964 | 1_1:-46052391 | Msa0024000:CDS |
| TTCAAAAGGGCTATTGAGAA+AGG | 0.457640 | 1_1:-46052621 | Msa0024000:CDS |
| TACATAATAATAAAATTAAG+AGG | 0.459644 | 1_1:+46052193 | None:intergenic |
| AGGAATTGCTTACAATGATC+AGG | 0.460510 | 1_1:-46053661 | Msa0024000:intron |
| GTAACTACATGTATATTAGA+AGG | 0.464949 | 1_1:-46052173 | Msa0024000:three_prime_UTR |
| TTATGTACTTCTTTAAGGTA+AGG | 0.471207 | 1_1:+46055849 | None:intergenic |
| TTCACAAATTGGTTTCAAAA+GGG | 0.476637 | 1_1:-46052634 | Msa0024000:CDS |
| GAGAACTCTATGCAATGCTT+TGG | 0.480858 | 1_1:-46053045 | Msa0024000:CDS |
| GATTCAAATGGTGAAGAGGT+TGG | 0.485511 | 1_1:-46052588 | Msa0024000:CDS |
| GAAGAGAATCTTTCTGTCTA+CGG | 0.488889 | 1_1:+46052344 | None:intergenic |
| GAATGTGTAGCTACTCTTGA+AGG | 0.491325 | 1_1:-46055111 | Msa0024000:CDS |
| GTTAATGGTGTTGGAGAATG+TGG | 0.491733 | 1_1:-46054799 | Msa0024000:CDS |
| GTTTGAAGGTTCATTTGACT+TGG | 0.491779 | 1_1:+46053145 | None:intergenic |
| AACTTGTAATAGCCCTATGT+TGG | 0.491983 | 1_1:-46055568 | Msa0024000:CDS |
| TATTATGTTTGCAGCTTCTG+TGG | 0.492924 | 1_1:+46055779 | None:intergenic |
| AGAAACCTAGCTAGAAAAGA+AGG | 0.495369 | 1_1:+46052271 | None:intergenic |
| AATATCCTAAAGATGAGAAC+GGG | 0.496661 | 1_1:-46055828 | Msa0024000:exon |
| ATAGATTGGTGGATGAAATT+GGG | 0.497982 | 1_1:-46052377 | Msa0024000:CDS |
| AATACCGGAAATTGCAAGTA+CGG | 0.498764 | 1_1:-46052994 | Msa0024000:CDS |
| AGATGACCCTAGTGTTAGTA+GGG | 0.499585 | 1_1:-46055379 | Msa0024000:CDS |
| TCTAAAGCCTTGCATTGAAG+AGG | 0.499748 | 1_1:+46055630 | None:intergenic |
| GAAAATCCTTCTTCTATGAG+TGG | 0.499993 | 1_1:-46055291 | Msa0024000:CDS |
| ACTTGTAATAGCCCTATGTT+GGG | 0.502989 | 1_1:-46055567 | Msa0024000:CDS |
| ATTGGATCCAATTAGGGTTG+AGG | 0.504439 | 1_1:-46055196 | Msa0024000:CDS |
| AGAAACAGCTTGTTCAACAT+TGG | 0.507972 | 1_1:+46055317 | None:intergenic |
| TCAATCTTCACCGTCAAAAG+TGG | 0.509178 | 1_1:+46055429 | None:intergenic |
| TTGTATTGTTGTAGCCATGC+AGG | 0.511455 | 1_1:+46053696 | None:intergenic |
| TATTTACAGAATGTCCAAGT+AGG | 0.512031 | 1_1:-46053365 | Msa0024000:intron |
| CTCAATCTCAAGCTTCCAGC+AGG | 0.514563 | 1_1:+46054673 | None:intergenic |
| CTCATAACCCTACTAACACT+AGG | 0.515656 | 1_1:+46055372 | None:intergenic |
| TTTGAATATTTCTATTGATG+AGG | 0.522031 | 1_1:-46052415 | Msa0024000:CDS |
| CCGGAATGGTGAAAAGAAAA+GGG | 0.524578 | 1_1:-46052956 | Msa0024000:CDS |
| TTGCTTTCAAATCAACACCT+TGG | 0.526981 | 1_1:+46052889 | None:intergenic |
| TATCCTATCACTATACCTGC+TGG | 0.527341 | 1_1:-46054688 | Msa0024000:CDS |
| AGGATGTTGTTGATGCTCAT+AGG | 0.530677 | 1_1:+46053223 | None:intergenic |
| AGGTGTAGTTAAAGGAGTAA+TGG | 0.536255 | 1_1:-46055091 | Msa0024000:CDS |
| TGGCTATTGCATGAAGGAGT+AGG | 0.540833 | 1_1:-46053783 | Msa0024000:CDS |
| GTAGGGTTATGAGAGAAGCA+GGG | 0.541087 | 1_1:-46055362 | Msa0024000:CDS |
| TTTGATTATAAGAAGAAACA+AGG | 0.542023 | 1_1:-46054880 | Msa0024000:CDS |
| TTCTATGAGTGGAAAGTCAA+AGG | 0.546131 | 1_1:-46055280 | Msa0024000:CDS |
| CTCTCACCCTCTTCAATGCA+AGG | 0.548550 | 1_1:-46055637 | Msa0024000:CDS |
| AAATAGCAAAAGAATTAGCT+AGG | 0.548699 | 1_1:-46052860 | Msa0024000:CDS |
| TTTGGATTCAAATGGTGAAG+AGG | 0.551332 | 1_1:-46052592 | Msa0024000:CDS |
| AAACCTGATGTAGATGAAGA+AGG | 0.555376 | 1_1:+46053248 | None:intergenic |
| AGCTGTTCTCAATAATCCAT+TGG | 0.555409 | 1_1:+46055674 | None:intergenic |
| TTGCACAAGGTCACTAGAAG+AGG | 0.556105 | 1_1:+46053112 | None:intergenic |
| GAATGATGAGAACCCAACAT+AGG | 0.558077 | 1_1:+46055555 | None:intergenic |
| AATGATGAGAACCCAACATA+GGG | 0.558354 | 1_1:+46055556 | None:intergenic |
| GATAGTTTCCAACAAAACAT+TGG | 0.564471 | 1_1:-46055220 | Msa0024000:CDS |
| TCCATTATCATGTGATCCAA+AGG | 0.564507 | 1_1:+46054835 | None:intergenic |
| TTCCAAATAGTCTCGAGTGA+TGG | 0.565104 | 1_1:+46054715 | None:intergenic |
| AAGCTGAGAATAAAACAAGC+TGG | 0.566561 | 1_1:-46053803 | Msa0024000:CDS |
| TTTGCAATGCCGATCCGGAA+TGG | 0.569780 | 1_1:-46052970 | Msa0024000:CDS |
| GATTGAGTCTCATCACTGAC+AGG | 0.581797 | 1_1:-46054657 | Msa0024000:intron |
| AATGTCAAGTAATCCTCATA+GGG | 0.585696 | 1_1:-46052694 | Msa0024000:CDS |
| CGATGAGGATGATAGATTGG+TGG | 0.588947 | 1_1:-46052388 | Msa0024000:CDS |
| TTGATTATAAGAAGAAACAA+GGG | 0.590629 | 1_1:-46054879 | Msa0024000:CDS |
| ATGGCCACGACGCTTTGCTA+GGG | 0.591505 | 1_1:+46055743 | None:intergenic |
| TAATATCCTAAAGATGAGAA+CGG | 0.592018 | 1_1:-46055829 | Msa0024000:exon |
| AGCTTGAGCACGCTTAAAAG+CGG | 0.594692 | 1_1:+46055488 | None:intergenic |
| ACAAGCTGGCTATTGCATGA+AGG | 0.600453 | 1_1:-46053789 | Msa0024000:CDS |
| CTAAAGCCTTGCATTGAAGA+GGG | 0.601547 | 1_1:+46055631 | None:intergenic |
| GGAAACTGTTCTTTGCAACA+AGG | 0.603124 | 1_1:-46055807 | Msa0024000:CDS |
| AACAAGAGTTGATTCAAGTG+AGG | 0.609537 | 1_1:-46052781 | Msa0024000:CDS |
| GGGCTATTACAAGTTGTCGC+TGG | 0.611230 | 1_1:+46055576 | None:intergenic |
| CAAGTTCAAGTCTTCCTGCA+TGG | 0.612792 | 1_1:-46053710 | Msa0024000:CDS |
| ACTATGCTTAGTGTTACCAA+TGG | 0.614381 | 1_1:-46055690 | Msa0024000:CDS |
| AATACCTAAGAAATGCAAAG+AGG | 0.628630 | 1_1:+46052225 | None:intergenic |
| ATAGTGTTTGCAACATGAAG+TGG | 0.629684 | 1_1:+46055708 | None:intergenic |
| TCATAACCCTACTAACACTA+GGG | 0.629834 | 1_1:+46055373 | None:intergenic |
| TATTGATGAGGATTACGATG+AGG | 0.637911 | 1_1:-46052403 | Msa0024000:CDS |
| TTAGTTGCTCCATTTGCACA+AGG | 0.651285 | 1_1:+46053099 | None:intergenic |
| GCTCAAGCTCATCAACGTCG+TGG | 0.666837 | 1_1:-46055474 | Msa0024000:CDS |
| ATGATGCTAAAGAAGAAACA+TGG | 0.677228 | 1_1:-46052920 | Msa0024000:CDS |
| GAAGTGGTGTTACTTGAGCA+TGG | 0.682174 | 1_1:+46055724 | None:intergenic |
| ATAACCCTAGCAAAGCGTCG+TGG | 0.740781 | 1_1:-46055747 | Msa0024000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACATATATAAT+TGG | - | chr1_1:46053956-46053975 | Msa0024000:intron | 10.0% |
| !!! | TATTTGCTATATATTTATTT+AGG | + | chr1_1:46054197-46054216 | None:intergenic | 10.0% |
| !!! | TATTATATATTTTGATTTGT+GGG | + | chr1_1:46054506-46054525 | None:intergenic | 10.0% |
| !!! | TTATTATATATTTTGATTTG+TGG | + | chr1_1:46054507-46054526 | None:intergenic | 10.0% |
| !! | AGTTTCAATAATAATATTAT+TGG | + | chr1_1:46054639-46054658 | None:intergenic | 10.0% |
| !! | TACATAATAATAAAATTAAG+AGG | + | chr1_1:46055896-46055915 | None:intergenic | 10.0% |
| !! | AATAATTATCTATCATGAAA+TGG | - | chr1_1:46053550-46053569 | Msa0024000:intron | 15.0% |
| !! | AAAAAAAAAAAGAACTAACT+AGG | - | chr1_1:46053848-46053867 | Msa0024000:intron | 15.0% |
| !! | CAATACAAAAATGAAAATAA+AGG | - | chr1_1:46054405-46054424 | Msa0024000:intron | 15.0% |
| !!! | ATTATATATTTTGATTTGTG+GGG | + | chr1_1:46054505-46054524 | None:intergenic | 15.0% |
| !! | TATTGAAATGAAATTATTGT+AGG | + | chr1_1:46055265-46055284 | None:intergenic | 15.0% |
| !!! | TGATTTTGGTAAATTTTCAA+GGG | - | chr1_1:46053085-46053104 | Msa0024000:CDS | 20.0% |
| !!! | AAAAAGAGTTTTAATGGAAA+AGG | - | chr1_1:46053149-46053168 | Msa0024000:CDS | 20.0% |
| !!! | AAAGGATATGTTTTATATCT+TGG | - | chr1_1:46053167-46053186 | Msa0024000:CDS | 20.0% |
| !! | TTTGATTATAAGAAGAAACA+AGG | - | chr1_1:46053206-46053225 | Msa0024000:CDS | 20.0% |
| !! | TTGATTATAAGAAGAAACAA+GGG | - | chr1_1:46053207-46053226 | Msa0024000:CDS | 20.0% |
| !! | GATAATTATTCATGAAAAGA+AGG | + | chr1_1:46053540-46053559 | None:intergenic | 20.0% |
| !!! | CAAAACATATTTTCCTTATA+TGG | + | chr1_1:46053662-46053681 | None:intergenic | 20.0% |
| !!! | CATATAAGGAAAATATGTTT+TGG | - | chr1_1:46053660-46053679 | Msa0024000:intron | 20.0% |
| !! | ATTTATGAAGCTATTAGAAA+TGG | + | chr1_1:46054117-46054136 | None:intergenic | 20.0% |
| !!! | ATTTTATCATCACAATGATA+GGG | + | chr1_1:46054796-46054815 | None:intergenic | 20.0% |
| !!! | AATTTTATCATCACAATGAT+AGG | + | chr1_1:46054797-46054816 | None:intergenic | 20.0% |
| !!! | GTTGATTATTTTTCACAAAT+TGG | - | chr1_1:46055441-46055460 | Msa0024000:CDS | 20.0% |
| !!! | TTTGAATATTTCTATTGATG+AGG | - | chr1_1:46055671-46055690 | Msa0024000:CDS | 20.0% |
| !!! | TTATGTACTTCTTTAAGGTA+AGG | + | chr1_1:46052240-46052259 | None:intergenic | 25.0% |
| ! | GGATATTATGTACTTCTTTA+AGG | + | chr1_1:46052245-46052264 | None:intergenic | 25.0% |
| ! | TAATATCCTAAAGATGAGAA+CGG | - | chr1_1:46052257-46052276 | Msa0024000:three_prime_UTR | 25.0% |
| !!! | AGAAAGAGTATTGTTATTGT+TGG | - | chr1_1:46052951-46052970 | Msa0024000:CDS | 25.0% |
| !! | GTAATGGAAAAGTTTGATAA+AGG | - | chr1_1:46053011-46053030 | Msa0024000:CDS | 25.0% |
| !!! | CTGATTTTGGTAAATTTTCA+AGG | - | chr1_1:46053084-46053103 | Msa0024000:CDS | 25.0% |
| ! | GAAAAAGTTGAAGAGATTAA+GGG | - | chr1_1:46053119-46053138 | Msa0024000:CDS | 25.0% |
| !!! | CTTGCAAAAAAGAGTTTTAA+TGG | - | chr1_1:46053143-46053162 | Msa0024000:CDS | 25.0% |
| ! | TATATCTTGGAGATCTAAAA+TGG | - | chr1_1:46053180-46053199 | Msa0024000:CDS | 25.0% |
| ! | GGTAAAATTAACATGAAGTT+TGG | - | chr1_1:46053450-46053469 | Msa0024000:intron | 25.0% |
| !!! | TTAGCTTTTAACCTAGTAAA+AGG | + | chr1_1:46053612-46053631 | None:intergenic | 25.0% |
| !! | TTTCCTATTTGTTTCTTAAG+TGG | - | chr1_1:46053694-46053713 | Msa0024000:CDS | 25.0% |
| ! | TAACCACTTAAGAAACAAAT+AGG | + | chr1_1:46053700-46053719 | None:intergenic | 25.0% |
| ! | TTCTTAAGTGGTTATTGTAA+TGG | - | chr1_1:46053706-46053725 | Msa0024000:CDS | 25.0% |
| ! | TCTTAAGTGGTTATTGTAAT+GGG | - | chr1_1:46053707-46053726 | Msa0024000:CDS | 25.0% |
| !!! | TTTTTAACTCTTTCCTAGTT+AGG | + | chr1_1:46053831-46053850 | None:intergenic | 25.0% |
| ! | ATTACTATCACCACATATAA+TGG | + | chr1_1:46054155-46054174 | None:intergenic | 25.0% |
| ! | GGTGATAGTAATATTTGAAA+TGG | - | chr1_1:46054163-46054182 | Msa0024000:intron | 25.0% |
| ! | GAAAAAGAAAAAAGAGGAAA+TGG | + | chr1_1:46054227-46054246 | None:intergenic | 25.0% |
| ! | TGAAGAGAAAAAGAAAAAAG+AGG | + | chr1_1:46054233-46054252 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTTTCTCTTCAG+TGG | - | chr1_1:46054234-46054253 | Msa0024000:intron | 25.0% |
| !! | ATTTAGTTAACGAGTCTTAT+AGG | - | chr1_1:46054597-46054616 | Msa0024000:intron | 25.0% |
| ! | ATGGCAAAAAGATATAATAC+CGG | - | chr1_1:46055077-46055096 | Msa0024000:CDS | 25.0% |
| ! | AAATAGCAAAAGAATTAGCT+AGG | - | chr1_1:46055226-46055245 | Msa0024000:CDS | 25.0% |
| ! | TGTACTTATATTGGAAGATT+TGG | - | chr1_1:46055363-46055382 | Msa0024000:CDS | 25.0% |
| !! | TTTCACAAATTGGTTTCAAA+AGG | - | chr1_1:46055451-46055470 | Msa0024000:CDS | 25.0% |
| !! | TTCACAAATTGGTTTCAAAA+GGG | - | chr1_1:46055452-46055471 | Msa0024000:CDS | 25.0% |
| !! | TGATATTAATGTTGCTACTT+TGG | - | chr1_1:46055620-46055639 | Msa0024000:CDS | 25.0% |
| ! | AAAGATTCTCTTCAAATTTC+AGG | - | chr1_1:46055752-46055771 | Msa0024000:CDS | 25.0% |
| ! | GTAACTACATGTATATTAGA+AGG | - | chr1_1:46055913-46055932 | Msa0024000:five_prime_UTR | 25.0% |
| AATATCCTAAAGATGAGAAC+GGG | - | chr1_1:46052258-46052277 | Msa0024000:three_prime_UTR | 30.0% | |
| ! | ACTAAAGCATTTGAGATAGA+AGG | + | chr1_1:46052576-46052595 | None:intergenic | 30.0% |
| GATAGTTTCCAACAAAACAT+TGG | - | chr1_1:46052866-46052885 | Msa0024000:CDS | 30.0% | |
| TTCCAACAAAACATTGGTAT+TGG | - | chr1_1:46052872-46052891 | Msa0024000:CDS | 30.0% | |
| ! | ATCCAATACCAATGTTTTGT+TGG | + | chr1_1:46052877-46052896 | None:intergenic | 30.0% |
| ! | ATTGGTATTGGATCCAATTA+GGG | - | chr1_1:46052884-46052903 | Msa0024000:CDS | 30.0% |
| ! | GATGTTGATGAATCTCTTAA+AGG | - | chr1_1:46053035-46053054 | Msa0024000:CDS | 30.0% |
| ! | TCTCTTTCTCTTTCTGATTT+TGG | - | chr1_1:46053071-46053090 | Msa0024000:CDS | 30.0% |
| !! | ATTTTCAAGGGTTGAAATTG+AGG | - | chr1_1:46053097-46053116 | Msa0024000:CDS | 30.0% |
| GGAAAAAGTTGAAGAGATTA+AGG | - | chr1_1:46053118-46053137 | Msa0024000:CDS | 30.0% | |
| !! | GATAATGGAGATTGGAAAAT+TGG | - | chr1_1:46053265-46053284 | Msa0024000:CDS | 30.0% |
| GAGATTGGAAAATTGGTTAA+TGG | - | chr1_1:46053272-46053291 | Msa0024000:CDS | 30.0% | |
| !!! | ATGTGTATTGCTACTTTTCA+AGG | - | chr1_1:46053323-46053342 | Msa0024000:CDS | 30.0% |
| GGTTACATGAGATGTAAAAA+TGG | - | chr1_1:46053344-46053363 | Msa0024000:CDS | 30.0% | |
| ATCTATCATGAAATGGACAT+TGG | - | chr1_1:46053557-46053576 | Msa0024000:intron | 30.0% | |
| ATGAAATGGACATTGGAAAA+GGG | - | chr1_1:46053564-46053583 | Msa0024000:intron | 30.0% | |
| ! | AGTTGTCTTTTCCTTTTACT+AGG | - | chr1_1:46053598-46053617 | Msa0024000:intron | 30.0% |
| TATTTAAGCCAAGCCATATA+AGG | - | chr1_1:46053646-46053665 | Msa0024000:intron | 30.0% | |
| ! | CATATTTTCCTTATATGGCT+TGG | + | chr1_1:46053657-46053676 | None:intergenic | 30.0% |
| ! | GGTTATTGTAATGGGAAAAA+TGG | - | chr1_1:46053715-46053734 | Msa0024000:CDS | 30.0% |
| AACCAAAAAAAGACCTAACT+AGG | - | chr1_1:46053815-46053834 | Msa0024000:CDS | 30.0% | |
| !!! | TTCCTAGTTAGGTCTTTTTT+TGG | + | chr1_1:46053820-46053839 | None:intergenic | 30.0% |
| !! | AGCTGTTTTACCATTATATG+TGG | - | chr1_1:46054142-46054161 | Msa0024000:intron | 30.0% |
| TATTTACAGAATGTCCAAGT+AGG | - | chr1_1:46054721-46054740 | Msa0024000:CDS | 30.0% | |
| AAAAAATGGAACTCTATGTG+TGG | - | chr1_1:46054754-46054773 | Msa0024000:CDS | 30.0% | |
| ! | GGTATTATATCTTTTTGCCA+TGG | + | chr1_1:46055078-46055097 | None:intergenic | 30.0% |
| ATGATGCTAAAGAAGAAACA+TGG | - | chr1_1:46055166-46055185 | Msa0024000:CDS | 30.0% | |
| !! | AATTAGCTAGGCTTGTTTTT+GGG | - | chr1_1:46055238-46055257 | Msa0024000:CDS | 30.0% |
| GAAGCAAGTTGTACTTATAT+TGG | - | chr1_1:46055354-46055373 | Msa0024000:CDS | 30.0% | |
| AATGTCAAGTAATCCTCATA+GGG | - | chr1_1:46055392-46055411 | Msa0024000:CDS | 30.0% | |
| ! | TATTGAGAAAGGAAGAGTTT+TGG | - | chr1_1:46055476-46055495 | Msa0024000:CDS | 30.0% |
| !! | TCTTGAGATGATCTTTGTTT+TGG | + | chr1_1:46055588-46055607 | None:intergenic | 30.0% |
| GACAAGTTCTTATGTTTCTT+TGG | - | chr1_1:46055647-46055666 | Msa0024000:CDS | 30.0% | |
| ! | ATAGATTGGTGGATGAAATT+GGG | - | chr1_1:46055709-46055728 | Msa0024000:CDS | 30.0% |
| !!! | TTTTTCCTTCTTTTCTAGCT+AGG | - | chr1_1:46055810-46055829 | Msa0024000:CDS | 30.0% |
| AATACCTAAGAAATGCAAAG+AGG | + | chr1_1:46055864-46055883 | None:intergenic | 30.0% | |
| TATTATGTTTGCAGCTTCTG+TGG | + | chr1_1:46052310-46052329 | None:intergenic | 35.0% | |
| ATAGTGTTTGCAACATGAAG+TGG | + | chr1_1:46052381-46052400 | None:intergenic | 35.0% | |
| ACTATGCTTAGTGTTACCAA+TGG | - | chr1_1:46052396-46052415 | Msa0024000:CDS | 35.0% | |
| AGCTGTTCTCAATAATCCAT+TGG | + | chr1_1:46052415-46052434 | None:intergenic | 35.0% | |
| AACTTGTAATAGCCCTATGT+TGG | - | chr1_1:46052518-46052537 | Msa0024000:CDS | 35.0% | |
| ACTTGTAATAGCCCTATGTT+GGG | - | chr1_1:46052519-46052538 | Msa0024000:CDS | 35.0% | |
| AATGATGAGAACCCAACATA+GGG | + | chr1_1:46052533-46052552 | None:intergenic | 35.0% | |
| !! | TCAACAACAACCACTTTTGA+CGG | - | chr1_1:46052647-46052666 | Msa0024000:CDS | 35.0% |
| TCATAACCCTACTAACACTA+GGG | + | chr1_1:46052716-46052735 | None:intergenic | 35.0% | |
| ! | AGAAACAGCTTGTTCAACAT+TGG | + | chr1_1:46052772-46052791 | None:intergenic | 35.0% |
| !! | TGTTGAACAAGCTGTTTCTT+TGG | - | chr1_1:46052773-46052792 | Msa0024000:CDS | 35.0% |
| GAAAATCCTTCTTCTATGAG+TGG | - | chr1_1:46052795-46052814 | Msa0024000:CDS | 35.0% | |
| TTCTATGAGTGGAAAGTCAA+AGG | - | chr1_1:46052806-46052825 | Msa0024000:CDS | 35.0% | |
| ! | CATTGGTATTGGATCCAATT+AGG | - | chr1_1:46052883-46052902 | Msa0024000:CDS | 35.0% |
| TTGATATCCTCAACCCTAAT+TGG | + | chr1_1:46052900-46052919 | None:intergenic | 35.0% | |
| ! | ACTCTTGAAGGTGTAGTTAA+AGG | - | chr1_1:46052987-46053006 | Msa0024000:CDS | 35.0% |
| AGGTGTAGTTAAAGGAGTAA+TGG | - | chr1_1:46052995-46053014 | Msa0024000:CDS | 35.0% | |
| AAGAAACAAGGGATGATTAG+AGG | - | chr1_1:46053218-46053237 | Msa0024000:CDS | 35.0% | |
| TAGAGGCTATTATTGTCCTT+TGG | - | chr1_1:46053235-46053254 | Msa0024000:CDS | 35.0% | |
| TCCTTTGGATCACATGATAA+TGG | - | chr1_1:46053250-46053269 | Msa0024000:CDS | 35.0% | |
| TCCATTATCATGTGATCCAA+AGG | + | chr1_1:46053254-46053273 | None:intergenic | 35.0% | |
| !! | GATCACATGATAATGGAGAT+TGG | - | chr1_1:46053257-46053276 | Msa0024000:CDS | 35.0% |
| GGAAAATTGGTTAATGGTGT+TGG | - | chr1_1:46053278-46053297 | Msa0024000:CDS | 35.0% | |
| ! | TTGGAGAATGTGGAAAGTTT+TGG | - | chr1_1:46053297-46053316 | Msa0024000:CDS | 35.0% |
| ! | TGTAACTTGTAACTGTGCTT+TGG | - | chr1_1:46053493-46053512 | Msa0024000:intron | 35.0% |
| CATGAAATGGACATTGGAAA+AGG | - | chr1_1:46053563-46053582 | Msa0024000:intron | 35.0% | |
| AAGCTGAGAATAAAACAAGC+TGG | - | chr1_1:46054283-46054302 | Msa0024000:intron | 35.0% | |
| AGGAATTGCTTACAATGATC+AGG | - | chr1_1:46054425-46054444 | Msa0024000:intron | 35.0% | |
| GGGGCATGGTAAAAAATAAT+TGG | + | chr1_1:46054486-46054505 | None:intergenic | 35.0% | |
| !!! | ATATTTTGATTTGTGGGGCA+TGG | + | chr1_1:46054500-46054519 | None:intergenic | 35.0% |
| ! | AGTTAACGAGTCTTATAGGT+AGG | - | chr1_1:46054601-46054620 | Msa0024000:intron | 35.0% |
| TAGGAGAGCTTTGCAAAAAA+TGG | - | chr1_1:46054740-46054759 | Msa0024000:CDS | 35.0% | |
| !! | CACAATGATAGGGTTGTTTT+TGG | + | chr1_1:46054786-46054805 | None:intergenic | 35.0% |
| AAACCTGATGTAGATGAAGA+AGG | + | chr1_1:46054841-46054860 | None:intergenic | 35.0% | |
| ! | CACTTTGAGAGAACCAAAAA+TGG | + | chr1_1:46054918-46054937 | None:intergenic | 35.0% |
| !!! | CATTTTTGGTTCTCTCAAAG+TGG | - | chr1_1:46054916-46054935 | Msa0024000:CDS | 35.0% |
| GTTTGAAGGTTCATTTGACT+TGG | + | chr1_1:46054944-46054963 | None:intergenic | 35.0% | |
| CACTAGAAGAGGTTGAATTA+GGG | + | chr1_1:46054966-46054985 | None:intergenic | 35.0% | |
| TCACTAGAAGAGGTTGAATT+AGG | + | chr1_1:46054967-46054986 | None:intergenic | 35.0% | |
| !! | ATGCAATGCTTTGGAGAAAA+AGG | - | chr1_1:46055050-46055069 | Msa0024000:CDS | 35.0% |
| AATACCGGAAATTGCAAGTA+CGG | - | chr1_1:46055092-46055111 | Msa0024000:CDS | 35.0% | |
| AAAACCGTACTTGCAATTTC+CGG | + | chr1_1:46055099-46055118 | None:intergenic | 35.0% | |
| !!! | GAAACATGGTTGTTTTTCCA+AGG | - | chr1_1:46055180-46055199 | Msa0024000:CDS | 35.0% |
| TTGCTTTCAAATCAACACCT+TGG | + | chr1_1:46055200-46055219 | None:intergenic | 35.0% | |
| !! | GAATTAGCTAGGCTTGTTTT+TGG | - | chr1_1:46055237-46055256 | Msa0024000:CDS | 35.0% |
| ! | AACAAGAGTTGATTCAAGTG+AGG | - | chr1_1:46055305-46055324 | Msa0024000:CDS | 35.0% |
| CAATGTCAAGTAATCCTCAT+AGG | - | chr1_1:46055391-46055410 | Msa0024000:CDS | 35.0% | |
| TCAACTAGAAAAACCCTATG+AGG | + | chr1_1:46055408-46055427 | None:intergenic | 35.0% | |
| TTCAAAAGGGCTATTGAGAA+AGG | - | chr1_1:46055465-46055484 | Msa0024000:CDS | 35.0% | |
| !!! | GGAAGAGTTTTGGATTCAAA+TGG | - | chr1_1:46055486-46055505 | Msa0024000:CDS | 35.0% |
| TTTGGATTCAAATGGTGAAG+AGG | - | chr1_1:46055494-46055513 | Msa0024000:CDS | 35.0% | |
| TATTGATGAGGATTACGATG+AGG | - | chr1_1:46055683-46055702 | Msa0024000:CDS | 35.0% | |
| TTACGATGAGGATGATAGAT+TGG | - | chr1_1:46055695-46055714 | Msa0024000:CDS | 35.0% | |
| ! | GATAGATTGGTGGATGAAAT+TGG | - | chr1_1:46055708-46055727 | Msa0024000:CDS | 35.0% |
| GAAGAGAATCTTTCTGTCTA+CGG | + | chr1_1:46055745-46055764 | None:intergenic | 35.0% | |
| AGAAACCTAGCTAGAAAAGA+AGG | + | chr1_1:46055818-46055837 | None:intergenic | 35.0% | |
| ATCACCTCTTTGCATTTCTT+AGG | - | chr1_1:46055857-46055876 | Msa0024000:five_prime_UTR | 35.0% | |
| AGTTTCCCGTTCTCATCTTT+AGG | + | chr1_1:46052266-46052285 | None:intergenic | 40.0% | |
| GGAAACTGTTCTTTGCAACA+AGG | - | chr1_1:46052279-46052298 | Msa0024000:three_prime_UTR | 40.0% | |
| CTAAAGCCTTGCATTGAAGA+GGG | + | chr1_1:46052458-46052477 | None:intergenic | 40.0% | |
| ! | TCTAAAGCCTTGCATTGAAG+AGG | + | chr1_1:46052459-46052478 | None:intergenic | 40.0% |
| GAATGATGAGAACCCAACAT+AGG | + | chr1_1:46052534-46052553 | None:intergenic | 40.0% | |
| TCAATCTTCACCGTCAAAAG+TGG | + | chr1_1:46052660-46052679 | None:intergenic | 40.0% | |
| TAGATGACCCTAGTGTTAGT+AGG | - | chr1_1:46052706-46052725 | Msa0024000:CDS | 40.0% | |
| AGATGACCCTAGTGTTAGTA+GGG | - | chr1_1:46052707-46052726 | Msa0024000:CDS | 40.0% | |
| CTCATAACCCTACTAACACT+AGG | + | chr1_1:46052717-46052736 | None:intergenic | 40.0% | |
| GACTTTCCACTCATAGAAGA+AGG | + | chr1_1:46052804-46052823 | None:intergenic | 40.0% | |
| ATTGGATCCAATTAGGGTTG+AGG | - | chr1_1:46052890-46052909 | Msa0024000:CDS | 40.0% | |
| GAATGTGTAGCTACTCTTGA+AGG | - | chr1_1:46052975-46052994 | Msa0024000:CDS | 40.0% | |
| ! | GTTAATGGTGTTGGAGAATG+TGG | - | chr1_1:46053287-46053306 | Msa0024000:CDS | 40.0% |
| ATCCATCACTCGAGACTATT+TGG | - | chr1_1:46053369-46053388 | Msa0024000:intron | 40.0% | |
| TTCCAAATAGTCTCGAGTGA+TGG | + | chr1_1:46053374-46053393 | None:intergenic | 40.0% | |
| TATCCTATCACTATACCTGC+TGG | - | chr1_1:46053398-46053417 | Msa0024000:intron | 40.0% | |
| TTGTATTGTTGTAGCCATGC+AGG | + | chr1_1:46054393-46054412 | None:intergenic | 40.0% | |
| ! | TTTTGCAAAGCTCTCCTACT+TGG | + | chr1_1:46054738-46054757 | None:intergenic | 40.0% |
| TCACCTTCTTCATCTACATC+AGG | - | chr1_1:46054835-46054854 | Msa0024000:CDS | 40.0% | |
| AGGATGTTGTTGATGCTCAT+AGG | + | chr1_1:46054866-46054885 | None:intergenic | 40.0% | |
| TCGCTTTGTGACACATTGTT+AGG | + | chr1_1:46054886-46054905 | None:intergenic | 40.0% | |
| GAGGTTGAATTAGGGTTTGA+AGG | + | chr1_1:46054958-46054977 | None:intergenic | 40.0% | |
| TTCTAGTGACCTTGTGCAAA+TGG | - | chr1_1:46054978-46054997 | Msa0024000:CDS | 40.0% | |
| TTAGTTGCTCCATTTGCACA+AGG | + | chr1_1:46054990-46055009 | None:intergenic | 40.0% | |
| GAGAACTCTATGCAATGCTT+TGG | - | chr1_1:46055041-46055060 | Msa0024000:CDS | 40.0% | |
| ! | CTTTGGAGAAAAAGGTTCCA+TGG | - | chr1_1:46055058-46055077 | Msa0024000:CDS | 40.0% |
| ! | TTCTTTTCACCATTCCGGAT+CGG | + | chr1_1:46055128-46055147 | None:intergenic | 40.0% |
| TCCGGAATGGTGAAAAGAAA+AGG | - | chr1_1:46055129-46055148 | Msa0024000:CDS | 40.0% | |
| ! | CCCTTTTCTTTTCACCATTC+CGG | + | chr1_1:46055133-46055152 | None:intergenic | 40.0% |
| CCGGAATGGTGAAAAGAAAA+GGG | - | chr1_1:46055130-46055149 | Msa0024000:CDS | 40.0% | |
| GATTCAAATGGTGAAGAGGT+TGG | - | chr1_1:46055498-46055517 | Msa0024000:CDS | 40.0% | |
| TGTTTGCAGCTTCTGTGGTT+AGG | + | chr1_1:46052305-46052324 | None:intergenic | 45.0% | |
| !! | GAAGTGGTGTTACTTGAGCA+TGG | + | chr1_1:46052365-46052384 | None:intergenic | 45.0% |
| AGCTTGAGCACGCTTAAAAG+CGG | + | chr1_1:46052601-46052620 | None:intergenic | 45.0% | |
| AGTAGGGTTATGAGAGAAGC+AGG | - | chr1_1:46052723-46052742 | Msa0024000:CDS | 45.0% | |
| GTAGGGTTATGAGAGAAGCA+GGG | - | chr1_1:46052724-46052743 | Msa0024000:CDS | 45.0% | |
| CTTCCAGCAGGTATAGTGAT+AGG | + | chr1_1:46053404-46053423 | None:intergenic | 45.0% | |
| GATTGAGTCTCATCACTGAC+AGG | - | chr1_1:46053429-46053448 | Msa0024000:intron | 45.0% | |
| ACAAGCTGGCTATTGCATGA+AGG | - | chr1_1:46054297-46054316 | Msa0024000:intron | 45.0% | |
| TGGCTATTGCATGAAGGAGT+AGG | - | chr1_1:46054303-46054322 | Msa0024000:intron | 45.0% | |
| CAAGTTCAAGTCTTCCTGCA+TGG | - | chr1_1:46054376-46054395 | Msa0024000:intron | 45.0% | |
| AGAACCAAAAATGGCGATCG+TGG | + | chr1_1:46054909-46054928 | None:intergenic | 45.0% | |
| TTGCACAAGGTCACTAGAAG+AGG | + | chr1_1:46054977-46054996 | None:intergenic | 45.0% | |
| CGATGAGGATGATAGATTGG+TGG | - | chr1_1:46055698-46055717 | Msa0024000:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_1:46052189-46052208 | None:intergenic | 50.0% | |
| !! | ATAACCCTAGCAAAGCGTCG+TGG | - | chr1_1:46052339-46052358 | Msa0024000:CDS | 50.0% |
| CTCTCACCCTCTTCAATGCA+AGG | - | chr1_1:46052449-46052468 | Msa0024000:CDS | 50.0% | |
| GGGCTATTACAAGTTGTCGC+TGG | + | chr1_1:46052513-46052532 | None:intergenic | 50.0% | |
| CTCAATCTCAAGCTTCCAGC+AGG | + | chr1_1:46053416-46053435 | None:intergenic | 50.0% | |
| ! | ACGGTTTTGCAATGCCGATC+CGG | - | chr1_1:46055111-46055130 | Msa0024000:CDS | 50.0% |
| TTTGCAATGCCGATCCGGAA+TGG | - | chr1_1:46055116-46055135 | Msa0024000:CDS | 50.0% | |
| ATGGCCACGACGCTTTGCTA+GGG | + | chr1_1:46052346-46052365 | None:intergenic | 55.0% | |
| GCTCAAGCTCATCAACGTCG+TGG | - | chr1_1:46052612-46052631 | Msa0024000:CDS | 55.0% | |
| !! | GCGACCACGATCGCCATTTT+TGG | - | chr1_1:46054902-46054921 | Msa0024000:CDS | 55.0% |
| CATGGCCACGACGCTTTGCT+AGG | + | chr1_1:46052347-46052366 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46052149 | 46055959 | 46052149 | ID=Msa0024000;Name=Msa0024000 |
| chr1_1 | mRNA | 46052149 | 46055959 | 46052149 | ID=Msa0024000-mRNA-1;Parent=Msa0024000;Name=Msa0024000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|3|177|808 |
| chr1_1 | exon | 46052149 | 46053378 | 46052149 | ID=Msa0024000-mRNA-1:exon:13097;Parent=Msa0024000-mRNA-1 |
| chr1_1 | exon | 46053662 | 46053854 | 46053662 | ID=Msa0024000-mRNA-1:exon:13096;Parent=Msa0024000-mRNA-1 |
| chr1_1 | exon | 46054658 | 46055959 | 46054658 | ID=Msa0024000-mRNA-1:exon:13095;Parent=Msa0024000-mRNA-1 |
| chr1_1 | five_prime_UTR | 46055839 | 46055959 | 46055839 | ID=Msa0024000-mRNA-1:five_prime_utr;Parent=Msa0024000-mRNA-1 |
| chr1_1 | CDS | 46054658 | 46055838 | 46054658 | ID=Msa0024000-mRNA-1:cds;Parent=Msa0024000-mRNA-1 |
| chr1_1 | CDS | 46053662 | 46053854 | 46053662 | ID=Msa0024000-mRNA-1:cds;Parent=Msa0024000-mRNA-1 |
| chr1_1 | CDS | 46052326 | 46053378 | 46052326 | ID=Msa0024000-mRNA-1:cds;Parent=Msa0024000-mRNA-1 |
| chr1_1 | three_prime_UTR | 46052149 | 46052325 | 46052149 | ID=Msa0024000-mRNA-1:three_prime_utr;Parent=Msa0024000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
