Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809980 | KAG2660576.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 28 | 130 | 9.14e-66 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809980 | sp|P0CG89|H4_SOYBN | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.06e-67 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809980 | A0A453MZH1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 31 | 133 | 3.54e-66 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0809980 | 0.824054 | 9.937611e-54 | -8.615850e-47 |
| Msa0048180 | Msa0809980 | 0.805510 | 1.289485e-49 | -8.615850e-47 |
| Msa0057710 | Msa0809980 | 0.820861 | 5.484525e-53 | -8.615850e-47 |
| Msa0062120 | Msa0809980 | 0.800894 | 1.163576e-48 | -8.615850e-47 |
| Msa0069330 | Msa0809980 | 0.804971 | 1.671918e-49 | -8.615850e-47 |
| Msa0076040 | Msa0809980 | 0.802888 | 4.529808e-49 | -8.615850e-47 |
| Msa0081210 | Msa0809980 | 0.816277 | 6.008430e-52 | -8.615850e-47 |
| Msa0081650 | Msa0809980 | 0.808443 | 3.089953e-50 | -8.615850e-47 |
| Msa0103180 | Msa0809980 | 0.806190 | 9.277247e-50 | -8.615850e-47 |
| Msa0104550 | Msa0809980 | 0.803199 | 3.906658e-49 | -8.615850e-47 |
| Msa0610090 | Msa0809980 | 0.800089 | 1.697048e-48 | -8.615850e-47 |
| Msa0618950 | Msa0809980 | 0.809120 | 2.213862e-50 | -8.615850e-47 |
| Msa0628420 | Msa0809980 | 0.814555 | 1.451553e-51 | -8.615850e-47 |
| Msa0638480 | Msa0809980 | 0.816941 | 4.265635e-52 | -8.615850e-47 |
| Msa0644030 | Msa0809980 | 0.823063 | 1.694357e-53 | -8.615850e-47 |
| Msa0644800 | Msa0809980 | 0.823279 | 1.509123e-53 | -8.615850e-47 |
| Msa0658480 | Msa0809980 | 0.812754 | 3.616474e-51 | -8.615850e-47 |
| Msa0666230 | Msa0809980 | 0.811542 | 6.645456e-51 | -8.615850e-47 |
| Msa0669180 | Msa0809980 | 0.806214 | 9.168671e-50 | -8.615850e-47 |
| Msa0697720 | Msa0809980 | 0.814631 | 1.396479e-51 | -8.615850e-47 |
| Msa0704890 | Msa0809980 | 0.808717 | 2.700432e-50 | -8.615850e-47 |
| Msa0705390 | Msa0809980 | 0.800812 | 1.209104e-48 | -8.615850e-47 |
| Msa0716410 | Msa0809980 | 0.804638 | 1.961883e-49 | -8.615850e-47 |
| Msa0748920 | Msa0809980 | 0.810486 | 1.125416e-50 | -8.615850e-47 |
| Msa0752510 | Msa0809980 | 0.800008 | 1.763049e-48 | -8.615850e-47 |
| Msa0804250 | Msa0809980 | 0.804753 | 1.856562e-49 | -8.615850e-47 |
| Msa0809980 | Msa0830880 | 0.809124 | 2.208992e-50 | -8.615850e-47 |
| Msa0809980 | Msa0850150 | 0.868228 | 7.628987e-66 | -8.615850e-47 |
| Msa0809980 | Msa0898760 | 0.807381 | 5.196100e-50 | -8.615850e-47 |
| Msa0809980 | Msa0901110 | 0.817749 | 2.806570e-52 | -8.615850e-47 |
| Msa0809980 | Msa0928120 | 0.813684 | 2.259288e-51 | -8.615850e-47 |
| Msa0809980 | Msa0943170 | 0.806911 | 6.534393e-50 | -8.615850e-47 |
| Msa0809980 | Msa0944660 | 0.804140 | 2.491521e-49 | -8.615850e-47 |
| Msa0809980 | Msa1029070 | 0.810525 | 1.103879e-50 | -8.615850e-47 |
| Msa0809980 | Msa1050910 | 0.807969 | 3.897443e-50 | -8.615850e-47 |
| Msa0809980 | Msa1051600 | 0.801318 | 9.529503e-49 | -8.615850e-47 |
| Msa0809980 | Msa1055010 | 0.829463 | 5.077272e-55 | -8.615850e-47 |
| Msa0809980 | Msa1078170 | 0.811376 | 7.221230e-51 | -8.615850e-47 |
| Msa0809980 | Msa1093840 | 0.820501 | 6.635579e-53 | -8.615850e-47 |
| Msa0809980 | Msa1123350 | 0.811343 | 7.340777e-51 | -8.615850e-47 |
| Msa0809980 | Msa1127540 | 0.838617 | 2.584871e-57 | -8.615850e-47 |
| Msa0809980 | Msa1127590 | 0.834647 | 2.655365e-56 | -8.615850e-47 |
| Msa0809980 | Msa1156160 | 0.805897 | 1.069379e-49 | -8.615850e-47 |
| Msa0809980 | Msa1165490 | 0.806102 | 9.683185e-50 | -8.615850e-47 |
| Msa0809980 | Msa1192850 | 0.805337 | 1.401521e-49 | -8.615850e-47 |
| Msa0809980 | Msa1201640 | 0.813882 | 2.043734e-51 | -8.615850e-47 |
| Msa0809980 | Msa1201830 | 0.808046 | 3.754676e-50 | -8.615850e-47 |
| Msa0809980 | Msa1202580 | 0.807174 | 5.750442e-50 | -8.615850e-47 |
| Msa0809980 | Msa1204830 | 0.803434 | 3.493024e-49 | -8.615850e-47 |
| Msa0809980 | Msa1208160 | 0.807064 | 6.065298e-50 | -8.615850e-47 |
| Msa0809980 | Msa1214320 | 0.815293 | 9.958142e-52 | -8.615850e-47 |
| Msa0809980 | Msa1221060 | 0.819577 | 1.079385e-52 | -8.615850e-47 |
| Msa0809980 | Msa1251160 | 0.834901 | 2.292980e-56 | -8.615850e-47 |
| Msa0809980 | Msa1253550 | 0.811212 | 7.839300e-51 | -8.615850e-47 |
| Msa0809980 | Msa1254620 | 0.817560 | 3.095344e-52 | -8.615850e-47 |
| Msa0809980 | Msa1265590 | 0.823724 | 1.187366e-53 | -8.615850e-47 |
| Msa0809980 | Msa1277080 | 0.802253 | 6.123643e-49 | -8.615850e-47 |
| Msa0809980 | Msa1278740 | 0.805643 | 1.208761e-49 | -8.615850e-47 |
| Msa0809980 | Msa1303240 | 0.815490 | 9.002748e-52 | -8.615850e-47 |
| Msa0809980 | Msa1303250 | 0.816494 | 5.371283e-52 | -8.615850e-47 |
| Msa0809980 | Msa1317950 | 0.817444 | 3.287913e-52 | -8.615850e-47 |
| Msa0809980 | Msa1317960 | 0.825671 | 4.126924e-54 | -8.615850e-47 |
| Msa0809980 | Msa1327490 | 0.813017 | 3.166035e-51 | -8.615850e-47 |
| Msa0809980 | Msa1335160 | 0.803255 | 3.804703e-49 | -8.615850e-47 |
| Msa0809980 | Msa1356610 | 0.824221 | 9.079161e-54 | -8.615850e-47 |
| Msa0809980 | Msa1361400 | 0.838962 | 2.105140e-57 | -8.615850e-47 |
| Msa0809980 | Msa1361410 | 0.814297 | 1.655312e-51 | -8.615850e-47 |
| Msa0809980 | Msa1369690 | 0.811771 | 5.925619e-51 | -8.615850e-47 |
| Msa0809980 | Msa1373100 | 0.825391 | 4.808037e-54 | -8.615850e-47 |
| Msa0809980 | Msa1373820 | 0.805575 | 1.249212e-49 | -8.615850e-47 |
| Msa0809980 | Msa1376650 | 0.806826 | 6.811956e-50 | -8.615850e-47 |
| Msa0809980 | Msa1383530 | 0.813707 | 2.234079e-51 | -8.615850e-47 |
| Msa0809980 | Msa1411950 | 0.820027 | 8.517855e-53 | -8.615850e-47 |
| Msa0809980 | Msa1412660 | 0.822637 | 2.129265e-53 | -8.615850e-47 |
| Msa0809980 | Msa1416370 | 0.802337 | 5.885094e-49 | -8.615850e-47 |
| Msa0809980 | Msa1421560 | 0.811192 | 7.916556e-51 | -8.615850e-47 |
| Msa0809980 | Msa1422950 | 0.825075 | 5.710455e-54 | -8.615850e-47 |
| Msa0809980 | Msa1440880 | 0.822222 | 2.658617e-53 | -8.615850e-47 |
| Msa0809980 | Msa1446810 | 0.814549 | 1.456268e-51 | -8.615850e-47 |
| Msa0809980 | Msa1446820 | 0.806292 | 8.831837e-50 | -8.615850e-47 |
| Msa0809980 | Msa1450720 | 0.815571 | 8.636084e-52 | -8.615850e-47 |
| Msa0809980 | Msa1451160 | 0.822596 | 2.176919e-53 | -8.615850e-47 |
| Msa0127100 | Msa0809980 | 0.802167 | 6.380553e-49 | -8.615850e-47 |
| Msa0127850 | Msa0809980 | 0.819496 | 1.126805e-52 | -8.615850e-47 |
| Msa0130240 | Msa0809980 | 0.803981 | 2.689368e-49 | -8.615850e-47 |
| Msa0147980 | Msa0809980 | 0.805232 | 1.474197e-49 | -8.615850e-47 |
| Msa0174000 | Msa0809980 | 0.820691 | 6.001128e-53 | -8.615850e-47 |
| Msa0188350 | Msa0809980 | 0.810950 | 8.933072e-51 | -8.615850e-47 |
| Msa0197780 | Msa0809980 | 0.800053 | 1.726178e-48 | -8.615850e-47 |
| Msa0372810 | Msa0809980 | 0.812827 | 3.484288e-51 | -8.615850e-47 |
| Msa0378970 | Msa0809980 | 0.810459 | 1.140896e-50 | -8.615850e-47 |
| Msa0388990 | Msa0809980 | 0.824329 | 8.561141e-54 | -8.615850e-47 |
| Msa0456880 | Msa0809980 | 0.826087 | 3.288628e-54 | -8.615850e-47 |
| Msa0241830 | Msa0809980 | 0.838801 | 2.317321e-57 | -8.615850e-47 |
| Msa0249580 | Msa0809980 | 0.811924 | 5.488990e-51 | -8.615850e-47 |
| Msa0262480 | Msa0809980 | 0.802076 | 6.660162e-49 | -8.615850e-47 |
| Msa0279850 | Msa0809980 | 0.819031 | 1.437940e-52 | -8.615850e-47 |
| Msa0300320 | Msa0809980 | 0.830512 | 2.816651e-55 | -8.615850e-47 |
| Msa0302160 | Msa0809980 | 0.801559 | 8.502561e-49 | -8.615850e-47 |
| Msa0322900 | Msa0809980 | 0.830834 | 2.348831e-55 | -8.615850e-47 |
| Msa0326590 | Msa0809980 | 0.800059 | 1.721078e-48 | -8.615850e-47 |
| Msa0339490 | Msa0809980 | 0.808004 | 3.832228e-50 | -8.615850e-47 |
| Msa0339500 | Msa0809980 | 0.809205 | 2.123131e-50 | -8.615850e-47 |
| Msa0341690 | Msa0809980 | 0.807816 | 4.200806e-50 | -8.615850e-47 |
| Msa0484290 | Msa0809980 | 0.808193 | 3.493449e-50 | -8.615850e-47 |
| Msa0516120 | Msa0809980 | 0.802298 | 5.996516e-49 | -8.615850e-47 |
| Msa0518030 | Msa0809980 | 0.808036 | 3.771627e-50 | -8.615850e-47 |
| Msa0531250 | Msa0809980 | 0.818919 | 1.524458e-52 | -8.615850e-47 |
| Msa0547020 | Msa0809980 | 0.820671 | 6.065490e-53 | -8.615850e-47 |
| Msa0547990 | Msa0809980 | 0.840962 | 6.337263e-58 | -8.615850e-47 |
| Msa0556010 | Msa0809980 | 0.805493 | 1.299852e-49 | -8.615850e-47 |
| Msa0560500 | Msa0809980 | 0.817304 | 3.534300e-52 | -8.615850e-47 |
| Msa0588090 | Msa0809980 | 0.802869 | 4.570645e-49 | -8.615850e-47 |
| Msa0593700 | Msa0809980 | 0.809950 | 1.468828e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809980 | MtrunA17_Chr4g0072411 | 100.000 | 103 | 0 | 0 | 1 | 103 | 59 | 161 | 5.39e-69 | 203 |
| Msa0809980 | MtrunA17_Chr5g0425951 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr4g0030431 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0100121 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0113681 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr2g0327641 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0103351 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr8g0352791 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0103821 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0104031 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr7g0225731 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0103801 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr3g0103881 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Msa0809980 | MtrunA17_Chr7g0262791 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.26e-68 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809980 | AT3G53730.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT1G07820.2 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT1G07820.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT5G59690.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT3G46320.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT2G28740.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT1G07660.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT3G45930.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT5G59970.1 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT5G59970.2 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 3.11e-68 | 199 |
| Msa0809980 | AT1G07660.2 | 83.495 | 103 | 0 | 1 | 1 | 103 | 1 | 86 | 4.52e-51 | 155 |
Find 26 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGAACCCTTTATGGTTT+TGG | 0.212027 | 5_3:-37851363 | Msa0809980:CDS |
| AGGCAAGGAAGAACCCTTTA+TGG | 0.295802 | 5_3:-37851369 | Msa0809980:CDS |
| AGGAAAAGGAGGAAAGGGTT+TGG | 0.356920 | 5_3:-37851634 | Msa0809980:CDS |
| GGAAAAGGAGGAAAGGGTTT+GGG | 0.372310 | 5_3:-37851633 | Msa0809980:CDS |
| GTTCTTCGAGATAACATTCA+AGG | 0.421661 | 5_3:-37851582 | Msa0809980:CDS |
| GGAAAGGGTTTGGGAAAGGG+TGG | 0.425706 | 5_3:-37851624 | Msa0809980:CDS |
| GGAGGAAAGGGTTTGGGAAA+GGG | 0.445686 | 5_3:-37851627 | Msa0809980:CDS |
| GGAAGAGGAAAAGGAGGAAA+GGG | 0.454700 | 5_3:-37851639 | Msa0809980:CDS |
| TCGCAAAACGGTGACTGCTA+TGG | 0.458269 | 5_3:-37851412 | Msa0809980:CDS |
| GAGACGACGAATCGCAGGTT+TGG | 0.461583 | 5_3:+37851554 | None:intergenic |
| ATCTTGCAATCAACAATGTC+AGG | 0.473641 | 5_3:-37851660 | None:intergenic |
| AGGAGGAAAGGGTTTGGGAA+AGG | 0.475381 | 5_3:-37851628 | Msa0809980:CDS |
| AGGAAGAGGAAAAGGAGGAA+AGG | 0.488546 | 5_3:-37851640 | Msa0809980:CDS |
| ACAATGTCAGGAAGAGGAAA+AGG | 0.493795 | 5_3:-37851648 | Msa0809980:CDS |
| CTGCGATTCGTCGTCTCGCA+AGG | 0.531517 | 5_3:-37851548 | Msa0809980:CDS |
| CAATCAACAATGTCAGGAAG+AGG | 0.542220 | 5_3:-37851654 | None:intergenic |
| CTTGCGAGACGACGAATCGC+AGG | 0.555283 | 5_3:+37851549 | None:intergenic |
| GGAACACGCTCGTCGCAAAA+CGG | 0.562995 | 5_3:-37851424 | Msa0809980:CDS |
| GTTTATGCACTCAAGAGGCA+AGG | 0.602465 | 5_3:-37851384 | Msa0809980:CDS |
| ATTCGTCGTCTCGCAAGGCG+TGG | 0.608390 | 5_3:-37851543 | Msa0809980:CDS |
| ATGTTGTTTATGCACTCAAG+AGG | 0.622074 | 5_3:-37851389 | Msa0809980:CDS |
| ATGTCAGGAAGAGGAAAAGG+AGG | 0.630961 | 5_3:-37851645 | Msa0809980:CDS |
| CGTCGTCTCGCAAGGCGTGG+TGG | 0.632134 | 5_3:-37851540 | Msa0809980:CDS |
| TCGTGATGCTGTAACCTACA+CGG | 0.656428 | 5_3:-37851445 | Msa0809980:CDS |
| GGTGGTGTGAAGCGTATCAG+TGG | 0.661880 | 5_3:-37851522 | Msa0809980:CDS |
| CTCATCTATGAAGAAACTCG+TGG | 0.682677 | 5_3:-37851498 | Msa0809980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GTTCTTCGAGATAACATTCA+AGG | - | chr5_3:37851419-37851438 | Msa0809980:CDS | 35.0% | |
| ! | ATGTTGTTTATGCACTCAAG+AGG | - | chr5_3:37851612-37851631 | Msa0809980:CDS | 35.0% |
| ! | GAAGAACCCTTTATGGTTTT+GGG | - | chr5_3:37851639-37851658 | Msa0809980:CDS | 35.0% |
| !! | AAGAACCCTTTATGGTTTTG+GGG | - | chr5_3:37851640-37851659 | Msa0809980:CDS | 35.0% |
| CTCATCTATGAAGAAACTCG+TGG | - | chr5_3:37851503-37851522 | Msa0809980:CDS | 40.0% | |
| ! | GGAAGAACCCTTTATGGTTT+TGG | - | chr5_3:37851638-37851657 | Msa0809980:CDS | 40.0% |
| !!! | AGAACCCTTTATGGTTTTGG+GGG | - | chr5_3:37851641-37851660 | Msa0809980:CDS | 40.0% |
| CTAACCCCCAAAACCATAAA+GGG | + | chr5_3:37851648-37851667 | None:intergenic | 40.0% | |
| ATGTCAGGAAGAGGAAAAGG+AGG | - | chr5_3:37851356-37851375 | Msa0809980:CDS | 45.0% | |
| AGGAAGAGGAAAAGGAGGAA+AGG | - | chr5_3:37851361-37851380 | Msa0809980:CDS | 45.0% | |
| GGAAGAGGAAAAGGAGGAAA+GGG | - | chr5_3:37851362-37851381 | Msa0809980:CDS | 45.0% | |
| AGGAAAAGGAGGAAAGGGTT+TGG | - | chr5_3:37851367-37851386 | Msa0809980:CDS | 45.0% | |
| GGAAAAGGAGGAAAGGGTTT+GGG | - | chr5_3:37851368-37851387 | Msa0809980:CDS | 45.0% | |
| TCGTGATGCTGTAACCTACA+CGG | - | chr5_3:37851556-37851575 | Msa0809980:CDS | 45.0% | |
| GTTTATGCACTCAAGAGGCA+AGG | - | chr5_3:37851617-37851636 | Msa0809980:CDS | 45.0% | |
| AGGCAAGGAAGAACCCTTTA+TGG | - | chr5_3:37851632-37851651 | Msa0809980:CDS | 45.0% | |
| AGGAGGAAAGGGTTTGGGAA+AGG | - | chr5_3:37851373-37851392 | Msa0809980:CDS | 50.0% | |
| GGAGGAAAGGGTTTGGGAAA+GGG | - | chr5_3:37851374-37851393 | Msa0809980:CDS | 50.0% | |
| TCGCAAAACGGTGACTGCTA+TGG | - | chr5_3:37851589-37851608 | Msa0809980:CDS | 50.0% | |
| GGAAAGGGTTTGGGAAAGGG+TGG | - | chr5_3:37851377-37851396 | Msa0809980:CDS | 55.0% | |
| GAGACGACGAATCGCAGGTT+TGG | + | chr5_3:37851450-37851469 | None:intergenic | 55.0% | |
| GGTGGTGTGAAGCGTATCAG+TGG | - | chr5_3:37851479-37851498 | Msa0809980:CDS | 55.0% | |
| GGAACACGCTCGTCGCAAAA+CGG | - | chr5_3:37851577-37851596 | Msa0809980:CDS | 55.0% | |
| CTTGCGAGACGACGAATCGC+AGG | + | chr5_3:37851455-37851474 | None:intergenic | 60.0% | |
| CTGCGATTCGTCGTCTCGCA+AGG | - | chr5_3:37851453-37851472 | Msa0809980:CDS | 60.0% | |
| ATTCGTCGTCTCGCAAGGCG+TGG | - | chr5_3:37851458-37851477 | Msa0809980:CDS | 60.0% | |
| GCGACGAGCGTGTTCCGTGT+AGG | + | chr5_3:37851573-37851592 | None:intergenic | 65.0% | |
| CGTCGTCTCGCAAGGCGTGG+TGG | - | chr5_3:37851461-37851480 | Msa0809980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 37851356 | 37851667 | 37851356 | ID=Msa0809980;Name=Msa0809980 |
| chr5_3 | mRNA | 37851356 | 37851667 | 37851356 | ID=Msa0809980-mRNA-1;Parent=Msa0809980;Name=Msa0809980-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|103 |
| chr5_3 | exon | 37851356 | 37851667 | 37851356 | ID=Msa0809980-mRNA-1:exon:11600;Parent=Msa0809980-mRNA-1 |
| chr5_3 | CDS | 37851356 | 37851667 | 37851356 | ID=Msa0809980-mRNA-1:cds;Parent=Msa0809980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
