AlfalfaGEDB | Msa0796770

M. sativa cultivar zhongmu-4 / Msa0796770

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796770	XP_003611359.2	95.739	798	34	0	4	801	32	829	0.0	1582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796770	sp\|Q7FAZ3\|LERK1_ORYSJ	45.217	805	398	20	25	801	24	813	0.0	662

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796770	G7JXG0	95.739	798	34	0	4	801	3	800	0.0	1580

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015090	Msa0796770	0.808374	3.195302e-50	-8.615850e-47
Msa0017320	Msa0796770	0.811377	7.216093e-51	-8.615850e-47
Msa0040620	Msa0796770	0.811559	6.589177e-51	-8.615850e-47
Msa0049750	Msa0796770	0.812852	3.441158e-51	-8.615850e-47
Msa0090550	Msa0796770	0.811485	6.836823e-51	-8.615850e-47
Msa0092410	Msa0796770	0.821062	4.930873e-53	-8.615850e-47
Msa0104800	Msa0796770	0.813853	2.073849e-51	-8.615850e-47
Msa0130520	Msa0796770	0.804946	1.692063e-49	-8.615850e-47
Msa0135410	Msa0796770	0.802723	4.898924e-49	-8.615850e-47
Msa0138020	Msa0796770	0.809155	2.175564e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796770	MtrunA17_Chr5g0399591	95.739	798	34	0	4	801	3	800	0.0	1580
Msa0796770	MtrunA17_Chr5g0399561	86.318	804	102	5	4	801	2	803	0.0	1452
Msa0796770	MtrunA17_Chr8g0338471	48.622	798	360	22	30	798	34	810	0.0	714
Msa0796770	MtrunA17_Chr2g0311521	47.348	792	381	15	24	800	260	1030	0.0	707
Msa0796770	MtrunA17_Chr8g0338501	47.309	799	371	21	30	798	63	841	0.0	694
Msa0796770	MtrunA17_Chr2g0311551	46.280	793	380	17	26	800	260	1024	0.0	692
Msa0796770	MtrunA17_Chr2g0311541	46.329	790	386	16	26	799	19	786	0.0	685
Msa0796770	MtrunA17_Chr8g0338531	44.356	753	353	19	93	797	12	746	0.0	587
Msa0796770	MtrunA17_Chr4g0063701	38.617	839	442	25	1	796	1	809	3.53e-169	509
Msa0796770	MtrunA17_Chr5g0394381	35.162	802	448	23	11	792	10	759	1.31e-140	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0796770	AT5G24080.2	31.623	838	491	27	6	794	10	814	6.81e-109	353
Msa0796770	AT1G34300.1	31.436	808	446	30	33	800	35	774	2.46e-101	332
Msa0796770	AT4G00340.1	32.992	782	440	26	37	784	30	761	5.44e-96	318
Msa0796770	AT4G00340.2	32.730	773	433	25	37	784	30	740	3.19e-95	315
Msa0796770	AT5G24080.3	31.972	710	418	20	127	794	1	687	3.57e-94	311
Msa0796770	AT5G24080.1	31.972	710	418	20	127	794	1	687	3.57e-94	311
Msa0796770	AT2G19130.1	30.580	811	475	28	27	800	25	784	1.24e-89	301
Msa0796770	AT4G32300.1	46.557	305	152	5	500	799	483	781	4.91e-79	271
Msa0796770	AT5G35370.1	29.046	723	410	21	127	791	135	812	8.23e-78	269
Msa0796770	AT4G21390.1	29.537	843	505	27	8	799	12	816	1.50e-77	268

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Find 164 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGTTTCTCCTCT+TGG	0.437024	5_3:+8801433	Msa0796770:CDS
AAAAGACTGCCTATTGCGAA+TGG	0.574550	5_3:+8801376	Msa0796770:CDS
AAAATGGTGATGGTGGGTCA+GGG	0.549802	5_3:-8802503	None:intergenic
AAAGATCTCTGACTTTGGTT+TGG	0.396229	5_3:+8802086	Msa0796770:CDS
AAAGTTGATGTTTACAGCTT+TGG	0.318268	5_3:+8802210	Msa0796770:CDS
AACAAGGATGGACTATTATG+AGG	0.522416	5_3:+8800981	Msa0796770:CDS
AACCTCGTACAAGCACCGAC+AGG	0.601870	5_3:+8800395	Msa0796770:CDS
AAGACTGAGTTGAGAGCAAT+TGG	0.370989	5_3:+8801802	Msa0796770:CDS
AAGAGATTGATTAGGCAAAA+GGG	0.517414	5_3:-8800597	None:intergenic
AAGTCAAGGAATCGAACTGA+AGG	0.590393	5_3:-8802526	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCTGAAAAAACCATTGTT+TGG	+	chr5_3:8800348-8800367	Msa0796770:CDS	30.0%
AAGAGATTGATTAGGCAAAA+GGG	-	chr5_3:8800600-8800619	None:intergenic	30.0%
CCTAATTCAAGAGATTGATT+AGG	-	chr5_3:8800608-8800627	None:intergenic	30.0%
CCTAATCAATCTCTTGAATT+AGG	+	chr5_3:8800605-8800624	Msa0796770:CDS	30.0%
AATCAATCTCTTGAATTAGG+TGG	+	chr5_3:8800608-8800627	Msa0796770:CDS	30.0%
CATCATCACGAAAATAAAGT+TGG	-	chr5_3:8800682-8800701	None:intergenic	30.0%
TGAATCAGGAGATATTTATG+TGG	+	chr5_3:8800808-8800827	Msa0796770:CDS	30.0%
AGAGCAACACTTGATTATTA+TGG	+	chr5_3:8800917-8800936	Msa0796770:CDS	30.0%
ATTGCAATGCAAATGTTATC+AGG	-	chr5_3:8801013-8801032	None:intergenic	30.0%
ATATTCAATGAAATGGGTAG+TGG	+	chr5_3:8801031-8801050	Msa0796770:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	8800140	8802545	8800140	ID=Msa0796770;Name=Msa0796770
chr5_3	mRNA	8800140	8802545	8800140	ID=Msa0796770-mRNA-1;Parent=Msa0796770;Name=Msa0796770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|801
chr5_3	exon	8800140	8802545	8800140	ID=Msa0796770-mRNA-1:exon:3739;Parent=Msa0796770-mRNA-1
chr5_3	CDS	8800140	8802545	8800140	ID=Msa0796770-mRNA-1:cds;Parent=Msa0796770-mRNA-1

Gene Sequence

>Msa0796770

ATGGCTTCTTCTTCTTCTTCTACCTTATACATAATTTTCATTCTATTTCTTCAACTTGTGTTAGTCTTTGGAAACGTTACTCGAAGTTCTACACTATCCACCACAAACAACAATTCATGGCTGTCACCTTCTGGTGAATTTGCTTTCGGATTTCGACAACTTAGTATAACAACAAACCTCTTCATGCTTGCAATATGGTACAACAAAATACCTGAAAAAACCATTGTTTGGAGTGCTAAAAACACAAACAACAACAACCTCGTACAAGCACCGACAGGATCACAAGTTCAGCTAACATCAGGAGGACTCACGTTGACAACTCTACAAGGTGAATCCATTTGGACAGCACAACCAAACACTGCTGTTTCCTATGGAATCATGCATGACACTGGAAACTTTGTTCTTGTGAACAAAAATTCTACTATTGTTTGGGAAAGTTTCAAGTTTCCTACTGATACCCTTTTGCCTAATCAATCTCTTGAATTAGGTGGAAACATAACTTCTAGATTCTCTGAGACCAATTACACAAGTGGGAGGTTCCAACTTTATTTTCGTGATGATGATCATAATCTCATGTTAAGTCCACTTGCATGGCCTACTCAATTACGTTACAAATTTTACTATAGAATTGATGTTAATAACTCTGCATCTTCAAGTTTAGTTTTTGATGAATCAGGAGATATTTATGTGGAAACAAATAATAATGGTACTACTAGAATCAAACCTCAGGGTACACAATGGAAAAATTTAGATCTTGATCCTAAGTTGTATTATTATAGAGCAACACTTGATTATTATGGAGTTTTGACACAATATTCTCATCCAAGGGACACTAAAGCAAAACAAGGATGGACTATTATGAGGTATATTCCTGATAACATTTGCATTGCAATATTCAATGAAATGGGTAGTGGAACTTGTGGCTATAATAGCTATTGTTCCATGGAAAATCAGAGACCTACTTGTAAATGTCCTTATGGTTATTCATTGATAGATCCAAGTGATCAATTTGGTGGGTGTCAAGTCAATTTCACACTAGGTTGTGGAGATGATAATGGTGAAGGGTTGAATGTGAAGCCAGAAGAGTTATATGAGTTTACTGTTCTTAGAGATGTGGATTGGCCTTTATCAGATTATGAAAAGATGCAACCTTATTCTCAACAGGATTGTCAACAGACTTGTTTGCATGATTGCATGTGTGCGGTAGCAATTTTCAATAACAATACTTGTTGGAAGAAAAGACTGCCTATTGCGAATGGAAGAGCACAAAGTGGTGGACAATTGGTACTTGTGAAAACAAGAGTTTCTCCTCTTGGCCTTTCTTCAACTAAATATGATTCGAAGAAAGACGACCGGGTTAAGCCGATTCTTCAAGGTTTACTTATTAGTTCCACTGTCTTCAATAGCATACTCTTAGCTGCGGTTGTTTTTATGACTTTGTTGAAGCCGAAAAAGGTTGTCCAAGCTGCACCTCTGGTGGAAACAAATTTATGTTCGTTTAGTTATGACGCATTAAAAGAAGCTACGTGGGGTTTTAGTGAAGAACTAGGTAGAGGGTCCTTTGGAATTGTTTACAAAGGTGAGTTAAAAGTAGGATCATCTTGCAATGTTGTTGCTGTTAAGAGATTGGATCGGTTAGCGGAGGATCGCGAGAAGGAATTTAAGACTGAGTTGAGAGCAATTGGAAAAACCTGCCACAAAAACTTGGTAAGGTTGGTTGGATTTTGTGATGAAGGAATGCATAGAATGTTGGTATATGAGTTCATGAGCAATGGTAGTCTTGCAAATATCTTGTTTGGAGAAACCAAACCCATTTGGAATCAAAGGGTAGGATTTTCTTTGGGGATAGCAAGAGGGTTGGTGTATTTACATGAAGAGTGTGACACTCCTATTATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTTACGGCAAAGATCTCTGACTTTGGTTTGGCCAAGTTGTTATTGGCTGATCAAAGTAGAACAAATACAATGATCCGAGGAACACGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACAGCTAAAGTTGATGTTTACAGCTTTGGTTCCATGTTGTTGGAAATTGTTTGCTGCAGAAAAAGTGTGTTGCTGATGGAGTCAGGGGAGGAAGAAAAGGCAATTTTGACAGATTGGGCTTGTGATTGTTATATGGAAGGGAGAATAGATGCTTTGGTAGAGAATGATCAAGAGGCCTTGGATGACATTGACAGGTTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAACATCCTGAAATGAGGCCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTGACCCACCATCACCATTTTCCTTCAGTTCGATTCCTTGA

Protein sequence

>Msa0796770

MASSSSSTLYIIFILFLQLVLVFGNVTRSSTLSTTNNNSWLSPSGEFAFGFRQLSITTNLFMLAIWYNKIPEKTIVWSAKNTNNNNLVQAPTGSQVQLTSGGLTLTTLQGESIWTAQPNTAVSYGIMHDTGNFVLVNKNSTIVWESFKFPTDTLLPNQSLELGGNITSRFSETNYTSGRFQLYFRDDDHNLMLSPLAWPTQLRYKFYYRIDVNNSASSSLVFDESGDIYVETNNNGTTRIKPQGTQWKNLDLDPKLYYYRATLDYYGVLTQYSHPRDTKAKQGWTIMRYIPDNICIAIFNEMGSGTCGYNSYCSMENQRPTCKCPYGYSLIDPSDQFGGCQVNFTLGCGDDNGEGLNVKPEELYEFTVLRDVDWPLSDYEKMQPYSQQDCQQTCLHDCMCAVAIFNNNTCWKKRLPIANGRAQSGGQLVLVKTRVSPLGLSSTKYDSKKDDRVKPILQGLLISSTVFNSILLAAVVFMTLLKPKKVVQAAPLVETNLCSFSYDALKEATWGFSEELGRGSFGIVYKGELKVGSSCNVVAVKRLDRLAEDREKEFKTELRAIGKTCHKNLVRLVGFCDEGMHRMLVYEFMSNGSLANILFGETKPIWNQRVGFSLGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIVCCRKSVLLMESGEEEKAILTDWACDCYMEGRIDALVENDQEALDDIDRLEKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPDPPSPFSFSSIP*