AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817810 MtrunA17_Chr5g0436831 92.442 516 12 2 1 491 1 514 0.0 937
Msa0817810 MtrunA17_Chr7g0253961 28.358 536 302 14 5 478 10 525 9.31e-44 162
Msa0817810 MtrunA17_Chr4g0003211 25.586 469 278 15 69 478 126 582 1.16e-20 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817810 AT5G05740.3 60.911 527 149 9 1 483 1 514 0.0 592
Msa0817810 AT5G05740.2 60.755 530 148 10 1 483 1 517 0.0 589
Msa0817810 AT5G05740.1 57.603 559 148 11 1 483 1 546 0.0 575
Msa0817810 AT5G35220.1 26.755 527 303 13 26 478 14 531 2.00e-41 156
Msa0817810 AT5G35210.1 39.316 117 68 1 287 400 1545 1661 3.56e-16 82.4
Msa0817810 AT1G17870.1 25.445 562 315 19 9 478 3 552 1.33e-15 79.7

Find 133 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGGTTTCATCTATAAA+TGG 0.131698 5_3:-53243181 None:intergenic
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_3:+53241098 Msa0817810:CDS
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_3:-53240062 None:intergenic
AGGAATGAGAATGATGAAAA+TGG 0.186441 5_3:-53234865 None:intergenic
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_3:-53240561 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_3:+53240468 Msa0817810:CDS
TCATCTGATAGAGGAGAAAT+TGG 0.248471 5_3:-53243073 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.269455 5_3:-53241403 None:intergenic
CATTTGTTATAGGATAAATT+TGG 0.280363 5_3:+53239779 Msa0817810:intron
CTATCAACCCTCTTGTGATC+TGG 0.284156 5_3:+53241410 Msa0817810:CDS
AATAAATCGGATTGCAAATT+GGG 0.290251 5_3:-53240061 None:intergenic
AACATTTCGCACTGAACAAC+TGG 0.313206 5_3:-53243414 None:intergenic
AAACCCTAACGCCATTAAAA+AGG 0.313721 5_3:-53234885 None:intergenic
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_3:+53240508 Msa0817810:CDS
ACCCTCTTGTGATCTGGGCT+TGG 0.322194 5_3:+53241416 Msa0817810:CDS
AAATGGAGAAACACAATCTT+TGG 0.324342 5_3:+53236842 Msa0817810:CDS
CCCTCTTGTGATCTGGGCTT+GGG 0.337951 5_3:+53241417 Msa0817810:CDS
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_3:+53240987 Msa0817810:intron
CATCCTCAGGATTGACTAGA+AGG 0.346366 5_3:-53239820 None:intergenic
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_3:+53240001 Msa0817810:CDS
TATCAACCCTCTTGTGATCT+GGG 0.351252 5_3:+53241411 Msa0817810:CDS
ATTTATAATTCATTAACAAA+TGG 0.362122 5_3:+53243367 Msa0817810:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_3:-53239866 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_3:+53241065 Msa0817810:CDS
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_3:+53240481 Msa0817810:CDS
TCCCTAACAGCCTCAACAAC+TGG 0.384146 5_3:+53239413 Msa0817810:intron
TTGTTACTGCACTTATTATC+GGG 0.385893 5_3:+53240509 Msa0817810:CDS
CGATACCTTTCTTCCCCATA+TGG 0.388554 5_3:-53241509 None:intergenic
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_3:+53241077 Msa0817810:CDS
ATAAATTTGGAGATGAATAC+AGG 0.402996 5_3:+53239792 Msa0817810:CDS
CAAGGGTTTCATCTATAAAT+GGG 0.405206 5_3:-53243180 None:intergenic
GGAATGAGAATGATGAAAAT+GGG 0.406041 5_3:-53234864 None:intergenic
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_3:+53241053 Msa0817810:CDS
TTTATAATTCATTAACAAAT+GGG 0.409451 5_3:+53243368 Msa0817810:three_prime_UTR
TGAAGGTAGTGAGAGATTCA+TGG 0.410422 5_3:-53234946 None:intergenic
TTTAGCTGTTCTGCATCTAC+AGG 0.415775 5_3:-53236894 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_3:-53241084 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_3:+53241076 Msa0817810:CDS
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_3:+53243020 Msa0817810:CDS
ACACTCTGGCAACATCACTA+TGG 0.421289 5_3:+53243233 Msa0817810:three_prime_UTR
CTTGTGATCTGGGCTTGGGC+AGG 0.421611 5_3:+53241421 Msa0817810:CDS
CACACACCTCGTAAGGATCT+TGG 0.435624 5_3:-53239518 None:intergenic
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_3:+53242962 Msa0817810:intron
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_3:-53241077 None:intergenic
TCCAGCGGGAATACTGTTGA+TGG 0.441942 5_3:-53241458 None:intergenic
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_3:+53240587 Msa0817810:CDS
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_3:+53240591 Msa0817810:CDS
GGAACGACGCGGAAAGTTGA+AGG 0.464506 5_3:-53234969 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_3:-53239848 None:intergenic
TACAAATCAAAATGATGTGC+AGG 0.470961 5_3:+53236935 Msa0817810:CDS
TCATTTCTAGCTGGCGGCAT+TGG 0.472509 5_3:+53241182 Msa0817810:CDS
TGTTCTGCATCTACAGGTGG+AGG 0.473670 5_3:-53236888 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_3:+53240562 Msa0817810:CDS
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_3:+53239986 Msa0817810:intron
TCAGTTATTTCATCTGATAG+AGG 0.476396 5_3:-53243082 None:intergenic
TTTCTAGTTGCCCAAAACCT+TGG 0.479583 5_3:+53240550 Msa0817810:CDS
AAGTAAGTACGAGTTGTCTC+TGG 0.481786 5_3:-53239884 None:intergenic
GCCACTGGCTTATCATCCTC+AGG 0.483050 5_3:-53239833 None:intergenic
CTTCTTCTTCTTCCTGTAGG+AGG 0.484021 5_3:-53235086 None:intergenic
TCTATAAATGGGAAAGGGTA+TGG 0.488120 5_3:-53243169 None:intergenic
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_3:-53240589 None:intergenic
ATTCCCGCTGGAGAAATTGA+TGG 0.493577 5_3:+53241469 Msa0817810:CDS
GAATTACGAAAACGATTAGA+AGG 0.496921 5_3:-53235038 None:intergenic
GCCAGTGGATCACCTCTGCC+AGG 0.499435 5_3:+53239284 Msa0817810:CDS
AATGTATCAAAACATACCCT+TGG 0.500360 5_3:+53243303 Msa0817810:three_prime_UTR
CTGATATTCTTCTTGCAAAG+AGG 0.500793 5_3:+53243049 Msa0817810:CDS
AGAGCAACATACTTGTCATC+AGG 0.510930 5_3:-53243106 None:intergenic
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_3:-53240507 None:intergenic
ATTATCGGGGTACATGAACT+TGG 0.511624 5_3:+53240523 Msa0817810:CDS
TTGAAGTTGAATCCTCCTAC+AGG 0.519904 5_3:+53235074 Msa0817810:CDS
TTAAGAACTGAAGTTGAGGT+AGG 0.527451 5_3:-53234834 None:intergenic
CCTCCATCAATTTCTCCAGC+GGG 0.528767 5_3:-53241472 None:intergenic
CTTGGTAACGTTCTCAAGGA+AGG 0.529950 5_3:+53241376 Msa0817810:CDS
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_3:+53240472 Msa0817810:CDS
TATCATACAACCTGCCAGCT+AGG 0.533569 5_3:-53240601 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_3:+53241128 Msa0817810:CDS
AGATAGGCACACACCTCGTA+AGG 0.537678 5_3:-53239525 None:intergenic
CAAGAAGTGCAGTGGGAGAG+AGG 0.540257 5_3:-53234990 None:intergenic
ATTACATCATCCAGTTGTTG+AGG 0.540848 5_3:-53239423 None:intergenic
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_3:-53240499 None:intergenic
TTTCACGAGTCATTTCTAGC+TGG 0.544995 5_3:+53241173 Msa0817810:CDS
TTTCATCTATAAATGGGAAA+GGG 0.545765 5_3:-53243174 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_3:-53240041 None:intergenic
GTTTCATCTATAAATGGGAA+AGG 0.548267 5_3:-53243175 None:intergenic
CACGAGTCATTTCTAGCTGG+CGG 0.551293 5_3:+53241176 Msa0817810:CDS
TTTGAAACTCAGTATACGGT+AGG 0.552926 5_3:+53243274 Msa0817810:three_prime_UTR
AGCTGTTCTGCATCTACAGG+TGG 0.557660 5_3:-53236891 None:intergenic
CCCTCCATCAATTTCTCCAG+CGG 0.559231 5_3:-53241473 None:intergenic
TGGAGAAACACAATCTTTGG+AGG 0.560871 5_3:+53236845 Msa0817810:CDS
ATCACCTCTGCCAGGTGTGA+AGG 0.562627 5_3:+53239292 Msa0817810:CDS
ACCTGGCAGAGGTGATCCAC+TGG 0.563174 5_3:-53239285 None:intergenic
GAAGTTAAGAACTGAAGTTG+AGG 0.566189 5_3:-53234838 None:intergenic
GTTTCTTGGTAACGTTCTCA+AGG 0.570500 5_3:+53241372 Msa0817810:CDS
GCCATCAACAGTATTCCCGC+TGG 0.575199 5_3:+53241457 Msa0817810:CDS
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_3:-53240588 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_3:-53241131 None:intergenic
AATATAATCACCTTCACACC+TGG 0.583486 5_3:-53239302 None:intergenic
GATGACAAGTATGTTGCTCT+CGG 0.586737 5_3:+53243109 Msa0817810:CDS
TGTTACTGCACTTATTATCG+GGG 0.591294 5_3:+53240510 Msa0817810:CDS
ATCACCTTCACACCTGGCAG+AGG 0.594663 5_3:-53239296 None:intergenic
AAGTTGAGGTAGGAAGAAGA+AGG 0.595955 5_3:-53234824 None:intergenic
ACAACACCAATACCGTCACT+TGG 0.597252 5_3:-53241134 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_3:-53240506 None:intergenic
ACTGTTTCTAGAAACTTGCA+AGG 0.605257 5_3:-53243198 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_3:-53240567 None:intergenic
GCCCAAGCCCAGATCACAAG+AGG 0.612324 5_3:-53241418 None:intergenic
TTGAAAGCAAGAAGTGCAGT+GGG 0.613507 5_3:-53234997 None:intergenic
CCCGCTGGAGAAATTGATGG+AGG 0.614785 5_3:+53241472 Msa0817810:CDS
TTTCCTTCTAGTCAATCCTG+AGG 0.617367 5_3:+53239817 Msa0817810:CDS
CCGCTGGAGAAATTGATGGA+GGG 0.622971 5_3:+53241473 Msa0817810:CDS
CTGTTTCTAGAAACTTGCAA+GGG 0.625123 5_3:-53243197 None:intergenic
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_3:+53243021 Msa0817810:CDS
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_3:-53240495 None:intergenic
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_3:+53241122 Msa0817810:CDS
GACGCAGCACCAAACCACTC+AGG 0.637018 5_3:-53239995 None:intergenic
GTTCTGCATCTACAGGTGGA+GGG 0.651010 5_3:-53236887 None:intergenic
TGTAGTGTTAATGAGTCTGA+TGG 0.652732 5_3:+53235122 Msa0817810:CDS
ATTGAAAGCAAGAAGTGCAG+TGG 0.654752 5_3:-53234998 None:intergenic
TGGAGGGTTACTTTGCTCAG+AGG 0.654797 5_3:-53236871 None:intergenic
ACGCGGAAAGTTGAAGGTGA+AGG 0.655777 5_3:-53234963 None:intergenic
TTGCAAGTTTCTAGAAACAG+TGG 0.658448 5_3:+53243200 Msa0817810:exon
TCCTGAGGATGATAAGCCAG+TGG 0.661607 5_3:+53239832 Msa0817810:CDS
GTGGCCACATGCATACACTC+TGG 0.662351 5_3:+53243219 Msa0817810:three_prime_UTR
TACTGTTGATGGCATTGATG+AGG 0.664732 5_3:-53241447 None:intergenic
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_3:-53240060 None:intergenic
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_3:-53239855 None:intergenic
CCCAAGCCCAGATCACAAGA+GGG 0.683801 5_3:-53241417 None:intergenic
AAGAAGAAGGAAGTGACGCG+AGG 0.687574 5_3:-53234811 None:intergenic
GTCTGATGGTGATAAAGACG+AGG 0.707643 5_3:+53235136 Msa0817810:CDS
GATAACATAGAAGTTGCCAG+TGG 0.714256 5_3:+53239269 Msa0817810:CDS
GTTGCCAGAGTGTATGCATG+TGG 0.719226 5_3:-53243223 None:intergenic
AACAAGCCAAGATCCTTACG+AGG 0.757784 5_3:+53239512 Msa0817810:CDS
AGTGGGAGAGAGGAACGACG+CGG 0.781394 5_3:-53234980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTATAACATTTTTT+TGG + chr5_3:53235809-53235828 Msa0817810:intron 10.0%
!!! AATAGTTTATATTTTATTGA+AGG - chr5_3:53240763-53240782 None:intergenic 10.0%
!! ATTTATAATTCATTAACAAA+TGG + chr5_3:53243367-53243386 Msa0817810:three_prime_UTR 10.0%
!! TTTATAATTCATTAACAAAT+GGG + chr5_3:53243368-53243387 Msa0817810:three_prime_UTR 10.0%
!! TCTTTATTAAGTAAGATAAT+TGG + chr5_3:53235288-53235307 Msa0817810:intron 15.0%
!!! TCATTTTCTCAAAAATTTAT+TGG - chr5_3:53235419-53235438 None:intergenic 15.0%
!!! ACATTAATGTAATTCTATTT+TGG + chr5_3:53235625-53235644 Msa0817810:intron 15.0%
!! AAACCAAAAAACTTTATAAT+TGG + chr5_3:53236018-53236037 Msa0817810:intron 15.0%
!! GTATATTCTTTAACATATAT+TGG + chr5_3:53236183-53236202 Msa0817810:intron 15.0%
!!! AAGAATAATATGTTTCTATT+TGG - chr5_3:53236654-53236673 None:intergenic 15.0%
!! TTTATTTATCGTAGAATAAT+AGG - chr5_3:53237677-53237696 None:intergenic 15.0%
!! TAGAAGAAAAATATTTAGAA+GGG + chr5_3:53238071-53238090 Msa0817810:intron 15.0%
!! TTATGTTAGAAATTTCAAAT+CGG - chr5_3:53238205-53238224 None:intergenic 15.0%
!! ATATAACACAAAAAAAATTG+TGG - chr5_3:53238685-53238704 None:intergenic 15.0%
!!! TACAAAAATATTGATCTTTT+AGG + chr5_3:53240259-53240278 Msa0817810:intron 15.0%
!! TTTACATGATATATATTAGA+TGG - chr5_3:53240728-53240747 None:intergenic 15.0%
!! ATAAAATATAAACTATTCAG+AGG + chr5_3:53240766-53240785 Msa0817810:intron 15.0%
!! TTCAAATTATCATTAAACTT+TGG - chr5_3:53241631-53241650 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG + chr5_3:53242754-53242773 Msa0817810:intron 15.0%
!! CAAAAAACTTTATAATTGGA+GGG + chr5_3:53236022-53236041 Msa0817810:intron 20.0%
!! TTAAAGAATCATTTCTCATT+TGG + chr5_3:53236258-53236277 Msa0817810:intron 20.0%
!! AGAATAATGATATCTTAAGT+TGG + chr5_3:53236381-53236400 Msa0817810:intron 20.0%
!! TAGAAACATATTATTCTTAG+TGG + chr5_3:53236656-53236675 Msa0817810:intron 20.0%
!! GTTTAAAAATTGTATTGTCA+AGG - chr5_3:53236797-53236816 None:intergenic 20.0%
!!! TACAATTTTTAAACTTACGT+AGG + chr5_3:53236803-53236822 Msa0817810:intron 20.0%
!! CTTGACTATTATATTCAATT+TGG + chr5_3:53236963-53236982 Msa0817810:intron 20.0%
!! AAAAATAAATACTATGTTCC+TGG + chr5_3:53237088-53237107 Msa0817810:intron 20.0%
!! GTAATCAAAAATATAATTCC+AGG - chr5_3:53237109-53237128 None:intergenic 20.0%
!!! AGATGATTTTTTTAGAGTTT+AGG + chr5_3:53237160-53237179 Msa0817810:intron 20.0%
!!! TTAATAATTTCTTTTCACTC+TGG + chr5_3:53237363-53237382 Msa0817810:intron 20.0%
!! CTAGAAGAAAAATATTTAGA+AGG + chr5_3:53238070-53238089 Msa0817810:intron 20.0%
!!! AAGATTGGAAATTTTAATTG+AGG + chr5_3:53238161-53238180 Msa0817810:intron 20.0%
!!! AGATTGGAAATTTTAATTGA+GGG + chr5_3:53238162-53238181 Msa0817810:intron 20.0%
!!! ATAATAAATTGCTATGCTTT+TGG + chr5_3:53238248-53238267 Msa0817810:intron 20.0%
!!! TAATAAATTGCTATGCTTTT+GGG + chr5_3:53238249-53238268 Msa0817810:intron 20.0%
!!! AAGAAGTTCAAAATTTTCAA+TGG + chr5_3:53238343-53238362 Msa0817810:intron 20.0%
!!! TATTTGAGATGATGAATATT+TGG + chr5_3:53238622-53238641 Msa0817810:intron 20.0%
!! TGAGATAATCTTTATCAATT+TGG - chr5_3:53239094-53239113 None:intergenic 20.0%
!!! TTTTATTTTTCTGTTCATGA+TGG - chr5_3:53239153-53239172 None:intergenic 20.0%
!! ACATAAGAGATATGAAAAAA+GGG - chr5_3:53239362-53239381 None:intergenic 20.0%
!! AACATAAGAGATATGAAAAA+AGG - chr5_3:53239363-53239382 None:intergenic 20.0%
!! TAAGAAATGAAACAGAAATA+TGG - chr5_3:53239702-53239721 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG + chr5_3:53239779-53239798 Msa0817810:intron 20.0%
!!! TCTTTTTTATTTTCTACTCA+TGG + chr5_3:53239936-53239955 Msa0817810:intron 20.0%
!!! GAACATCAACAATAATATTT+TGG - chr5_3:53240436-53240455 None:intergenic 20.0%
!! GATGCATATAATAAACTTTA+GGG + chr5_3:53240788-53240807 Msa0817810:intron 20.0%
!! CCATAACATATTAAATTATG+TGG - chr5_3:53240839-53240858 None:intergenic 20.0%
!! CCACATAATTTAATATGTTA+TGG + chr5_3:53240836-53240855 Msa0817810:intron 20.0%
!! AGATTCAAATTGACAAAATT+TGG + chr5_3:53240869-53240888 Msa0817810:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG + chr5_3:53240967-53240986 Msa0817810:intron 20.0%
!! CAACATTAATATGTTGAAAA+AGG + chr5_3:53241841-53241860 Msa0817810:intron 20.0%
!!! TATAGTTTATTGTTATTGCT+TGG + chr5_3:53242055-53242074 Msa0817810:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG - chr5_3:53242627-53242646 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG - chr5_3:53242631-53242650 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG + chr5_3:53242629-53242648 Msa0817810:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG + chr5_3:53242632-53242651 Msa0817810:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG + chr5_3:53242770-53242789 Msa0817810:intron 20.0%
!! TTACACATAAAAAGAAGTAA+AGG - chr5_3:53242919-53242938 None:intergenic 20.0%
!!! ATTTTTTGAAACTCAGTATA+CGG + chr5_3:53243270-53243289 Msa0817810:three_prime_UTR 20.0%
!! TCATTCTCATTCCTTTTTAA+TGG + chr5_3:53234874-53234893 Msa0817810:five_prime_UTR 25.0%
! TGATATATACTGAGTAATGA+AGG + chr5_3:53235205-53235224 Msa0817810:intron 25.0%
! TTTAATGTAATCACAAGTGT+CGG + chr5_3:53235440-53235459 Msa0817810:intron 25.0%
!!! TCTCGATAAGTTTTTTGTTT+GGG + chr5_3:53235838-53235857 Msa0817810:intron 25.0%
!!! GTAACAATTTTTTAACTTGC+AGG + chr5_3:53235962-53235981 Msa0817810:intron 25.0%
! ATCTAAACAGAAAAGGTTAT+AGG + chr5_3:53235990-53236009 Msa0817810:intron 25.0%
! TCTAAACAGAAAAGGTTATA+GGG + chr5_3:53235991-53236010 Msa0817810:intron 25.0%
!!! CCTCCAATTATAAAGTTTTT+TGG - chr5_3:53236024-53236043 None:intergenic 25.0%
! CCAAAAAACTTTATAATTGG+AGG + chr5_3:53236021-53236040 Msa0817810:intron 25.0%
! CCAAATTTGTGGTTAATAAA+AGG - chr5_3:53236066-53236085 None:intergenic 25.0%
!! CCTTTTATTAACCACAAATT+TGG + chr5_3:53236063-53236082 Msa0817810:intron 25.0%
!! ATCATTTCTCATTTGGATTT+TGG + chr5_3:53236265-53236284 Msa0817810:intron 25.0%
!!! ATGATATCTTAAGTTGGATA+TGG + chr5_3:53236387-53236406 Msa0817810:intron 25.0%
!!! TGATATCTTAAGTTGGATAT+GGG + chr5_3:53236388-53236407 Msa0817810:intron 25.0%
! GTAGATTATGTAATAGGAAA+AGG + chr5_3:53236463-53236482 Msa0817810:intron 25.0%
! ATAAAAGTGATGAGATAGAA+AGG + chr5_3:53236511-53236530 Msa0817810:intron 25.0%
!! GAAAAGGTATGAAAAAACAA+AGG - chr5_3:53236775-53236794 None:intergenic 25.0%
! AAATTGTATTGTCAAGGAAA+AGG - chr5_3:53236791-53236810 None:intergenic 25.0%
! TCAACAAGACATAAAACAAA+AGG - chr5_3:53237038-53237057 None:intergenic 25.0%
!! TGAGATATTGAATAGTTTGT+TGG + chr5_3:53237462-53237481 Msa0817810:intron 25.0%
! CAGACAAAATTTACTTGATT+TGG - chr5_3:53237517-53237536 None:intergenic 25.0%
! AAAACTTTGATACCTCTATT+GGG - chr5_3:53237577-53237596 None:intergenic 25.0%
!! CTTTGTTATCGTAGAATAAT+AGG - chr5_3:53237625-53237644 None:intergenic 25.0%
!!! TTCTAGTTTTATTCACTTGT+AGG - chr5_3:53238056-53238075 None:intergenic 25.0%
! CATAGCAATTTATTATGCAT+TGG - chr5_3:53238244-53238263 None:intergenic 25.0%
!! AATAAATTGCTATGCTTTTG+GGG + chr5_3:53238250-53238269 Msa0817810:intron 25.0%
!! AAATAATGCCACTTATTCAT+TGG + chr5_3:53238385-53238404 Msa0817810:intron 25.0%
! GTTACAAGGAATAATAAACA+CGG - chr5_3:53238523-53238542 None:intergenic 25.0%
! TACTCATAATTCATGAAAGA+AGG + chr5_3:53238779-53238798 Msa0817810:intron 25.0%
! ACTCATAATTCATGAAAGAA+GGG + chr5_3:53238780-53238799 Msa0817810:intron 25.0%
!!! ATTAAGCATATTTGTTTCTG+TGG + chr5_3:53238823-53238842 Msa0817810:intron 25.0%
! TTAGACAAATAACAAAGACA+TGG - chr5_3:53238977-53238996 None:intergenic 25.0%
! CTAAATTAAATCCTTGAAAC+AGG + chr5_3:53238993-53239012 Msa0817810:intron 25.0%
! AAGTGTAACTAACAAAAATC+AGG - chr5_3:53239020-53239039 None:intergenic 25.0%
!! GATGGAAAAGATTGTAATTT+TGG - chr5_3:53239135-53239154 None:intergenic 25.0%
! GTACAATAGATGAGAAAATT+AGG - chr5_3:53239221-53239240 None:intergenic 25.0%
!! TTTTCTCATCTATTGTACTT+TGG + chr5_3:53239223-53239242 Msa0817810:intron 25.0%
! TTTCTCATCTATTGTACTTT+GGG + chr5_3:53239224-53239243 Msa0817810:intron 25.0%
! TTCAATATTTCCTATGTTAG+AGG + chr5_3:53239330-53239349 Msa0817810:intron 25.0%
! TGATGTAATAAAAATTCCCA+AGG + chr5_3:53239437-53239456 Msa0817810:CDS 25.0%
! ATCCTTAAAAATCAAGTGTT+TGG + chr5_3:53239471-53239490 Msa0817810:CDS 25.0%
! AAACTAAATAGAGGAAAGAT+AGG - chr5_3:53239544-53239563 None:intergenic 25.0%
! GCATATGAAAAACTAAATAG+AGG - chr5_3:53239553-53239572 None:intergenic 25.0%
!!! TTAGTTTTTCATATGCTCAA+AGG + chr5_3:53239557-53239576 Msa0817810:intron 25.0%
!!! ATCTGCATAACATTTGTTAT+AGG + chr5_3:53239769-53239788 Msa0817810:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG + chr5_3:53239792-53239811 Msa0817810:CDS 25.0%
! AATAAATCGGATTGCAAATT+GGG - chr5_3:53240064-53240083 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG - chr5_3:53240077-53240096 None:intergenic 25.0%
! TTCATACTCTATTATCTCTT+AGG + chr5_3:53240116-53240135 Msa0817810:intron 25.0%
! TCATACTCTATTATCTCTTA+GGG + chr5_3:53240117-53240136 Msa0817810:intron 25.0%
! ATTCCTTCAAGTAAATTTCA+AGG + chr5_3:53240209-53240228 Msa0817810:intron 25.0%
! TATCCTTGAAATTTACTTGA+AGG - chr5_3:53240215-53240234 None:intergenic 25.0%
!!! AATATTTTTGTACCCAAACA+TGG - chr5_3:53240251-53240270 None:intergenic 25.0%
! GTATGATTTATTCCTATGAA+AGG - chr5_3:53240351-53240370 None:intergenic 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG + chr5_3:53240468-53240487 Msa0817810:CDS 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG + chr5_3:53240472-53240491 Msa0817810:CDS 25.0%
! GGATGCATATAATAAACTTT+AGG + chr5_3:53240787-53240806 Msa0817810:intron 25.0%
!! CATATAATAAACTTTAGGGA+TGG + chr5_3:53240792-53240811 Msa0817810:intron 25.0%
! ATTATGTGGTTTGAAAAAAC+AGG - chr5_3:53240825-53240844 None:intergenic 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG + chr5_3:53240970-53240989 Msa0817810:intron 25.0%
!!! TTATTTTGATCTTGACTCTT+AGG + chr5_3:53241545-53241564 Msa0817810:intron 25.0%
!!! AGTATCGATTTTATCTCAAA+TGG - chr5_3:53241588-53241607 None:intergenic 25.0%
! CAAAATAATAGCTCCAAATT+TGG + chr5_3:53241886-53241905 Msa0817810:intron 25.0%
! GAATAATGTCATCTTTGAAT+CGG - chr5_3:53241960-53241979 None:intergenic 25.0%
! TGAAATAACACTCATTAATC+TGG - chr5_3:53242375-53242394 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG - chr5_3:53242628-53242647 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG - chr5_3:53242815-53242834 None:intergenic 25.0%
! ACATAAAAAGAAGTAAAGGA+AGG - chr5_3:53242915-53242934 None:intergenic 25.0%
! TTTCATCTATAAATGGGAAA+GGG - chr5_3:53243177-53243196 None:intergenic 25.0%
!! TAGTTGAAAATTTTCATCAC+TGG + chr5_3:53243437-53243456 Msa0817810:three_prime_UTR 25.0%
GGAATGAGAATGATGAAAAT+GGG - chr5_3:53234867-53234886 None:intergenic 30.0%
AGGAATGAGAATGATGAAAA+TGG - chr5_3:53234868-53234887 None:intergenic 30.0%
! ATTCCTTTTTAATGGCGTTA+GGG + chr5_3:53234882-53234901 Msa0817810:five_prime_UTR 30.0%
GAATTACGAAAACGATTAGA+AGG - chr5_3:53235041-53235060 None:intergenic 30.0%
ATAATTGGATTCGTTATGAG+TGG + chr5_3:53235303-53235322 Msa0817810:intron 30.0%
ACAGAGATTACAAGACTATT+TGG + chr5_3:53235490-53235509 Msa0817810:intron 30.0%
!!! TCTATTTTGGTAAATTAGCC+TGG + chr5_3:53235638-53235657 Msa0817810:intron 30.0%
AATACAACTCAGTTAGTAAC+TGG - chr5_3:53235738-53235757 None:intergenic 30.0%
!!! GTCTCGATAAGTTTTTTGTT+TGG + chr5_3:53235837-53235856 Msa0817810:intron 30.0%
TTCCCTGACATAAACATATT+GGG + chr5_3:53235891-53235910 Msa0817810:intron 30.0%
CTAAACAGAAAAGGTTATAG+GGG + chr5_3:53235992-53236011 Msa0817810:intron 30.0%
TTTGAACACCTGAAAATTTG+TGG - chr5_3:53236099-53236118 None:intergenic 30.0%
AGTTAAACACTTGACAATTG+TGG + chr5_3:53236128-53236147 Msa0817810:intron 30.0%
GAAGTGGTAGATTATGTAAT+AGG + chr5_3:53236457-53236476 Msa0817810:intron 30.0%
ATCAGAAGTGATGTTTAAGA+AGG + chr5_3:53236584-53236603 Msa0817810:intron 30.0%
TTCACACATTGTAGAAAGAA+TGG + chr5_3:53236729-53236748 Msa0817810:intron 30.0%
! GAGAAAGAAGCACATAAAAA+TGG + chr5_3:53236825-53236844 Msa0817810:CDS 30.0%
AAATGGAGAAACACAATCTT+TGG + chr5_3:53236842-53236861 Msa0817810:CDS 30.0%
TACAAATCAAAATGATGTGC+AGG + chr5_3:53236935-53236954 Msa0817810:CDS 30.0%
TCACATTGATATGTAGAAGA+AGG + chr5_3:53237137-53237156 Msa0817810:intron 30.0%
AGTCAAGAAACCAAGTATAT+GGG + chr5_3:53237294-53237313 Msa0817810:intron 30.0%
TTTGTATGGTAACACAACTT+GGG + chr5_3:53237401-53237420 Msa0817810:intron 30.0%
CAAAACTTTGATACCTCTAT+TGG - chr5_3:53237578-53237597 None:intergenic 30.0%
!!! CAATAGAGGTATCAAAGTTT+TGG + chr5_3:53237576-53237595 Msa0817810:intron 30.0%
ATTCTACGATAACAAAGTCT+TGG + chr5_3:53237628-53237647 Msa0817810:intron 30.0%
AGTGATTGTTAAACCAGAAT+TGG + chr5_3:53237746-53237765 Msa0817810:intron 30.0%
AATCTTGGCAAATGTGTATT+GGG - chr5_3:53237788-53237807 None:intergenic 30.0%
GTTAGGAAATGGTAACATAA+TGG + chr5_3:53237856-53237875 Msa0817810:intron 30.0%
TAGAAGGGAAAACTTTGTTA+AGG + chr5_3:53238086-53238105 Msa0817810:intron 30.0%
AGAAGGGAAAACTTTGTTAA+GGG + chr5_3:53238087-53238106 Msa0817810:intron 30.0%
! TTTTCTGACGAAAAGAAGAT+TGG + chr5_3:53238146-53238165 Msa0817810:intron 30.0%
!!! TTGGAAATTTTAATTGAGGG+TGG + chr5_3:53238165-53238184 Msa0817810:intron 30.0%
! TTTTGAACTTCTTCCAAAGA+TGG - chr5_3:53238336-53238355 None:intergenic 30.0%
! GTTCAAAATTTTCAATGGTG+TGG + chr5_3:53238348-53238367 Msa0817810:intron 30.0%
TGAGATGATGAATATTTGGT+TGG + chr5_3:53238626-53238645 Msa0817810:intron 30.0%
AAAATCTGCACAACAAAGAA+GGG - chr5_3:53238738-53238757 None:intergenic 30.0%
AAAAATCTGCACAACAAAGA+AGG - chr5_3:53238739-53238758 None:intergenic 30.0%
TGCTTAATTGCAACTGAAAA+GGG - chr5_3:53238811-53238830 None:intergenic 30.0%
ATGCTTAATTGCAACTGAAA+AGG - chr5_3:53238812-53238831 None:intergenic 30.0%
! ACAAAGACATGGACTAATTA+GGG - chr5_3:53238966-53238985 None:intergenic 30.0%
! AACAAAGACATGGACTAATT+AGG - chr5_3:53238967-53238986 None:intergenic 30.0%
AAACTCTGTTCTTAAGAGTA+AGG + chr5_3:53239185-53239204 Msa0817810:intron 30.0%
CTTGTGATCAAAACAGAATA+CGG + chr5_3:53239247-53239266 Msa0817810:intron 30.0%
!!! AGGATTTCGATTTTTTCCTT+GGG - chr5_3:53239456-53239475 None:intergenic 30.0%
!!! AAGGATTTCGATTTTTTCCT+TGG - chr5_3:53239457-53239476 None:intergenic 30.0%
! AGCCAAACACTTGATTTTTA+AGG - chr5_3:53239476-53239495 None:intergenic 30.0%
! GTTCAGAAGTTATTTCAACA+TGG - chr5_3:53239744-53239763 None:intergenic 30.0%
ACTTAACTCCTTCAAAATTG+TGG + chr5_3:53239903-53239922 Msa0817810:intron 30.0%
! ACAATGATCCACAATTTTGA+AGG - chr5_3:53239914-53239933 None:intergenic 30.0%
ATAAATCGGATTGCAAATTG+GGG - chr5_3:53240063-53240082 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG - chr5_3:53240065-53240084 None:intergenic 30.0%
CATACTCTATTATCTCTTAG+GGG + chr5_3:53240118-53240137 Msa0817810:intron 30.0%
TCCTAACAAATACCATGTTT+GGG + chr5_3:53240236-53240255 Msa0817810:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG - chr5_3:53240348-53240367 None:intergenic 30.0%
! CATATCATAGATGCATTTTG+AGG + chr5_3:53240405-53240424 Msa0817810:intron 30.0%
GATAATAAGTGCAGTAACAA+GGG - chr5_3:53240509-53240528 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG + chr5_3:53240508-53240527 Msa0817810:CDS 30.0%
TTGTTACTGCACTTATTATC+GGG + chr5_3:53240509-53240528 Msa0817810:CDS 30.0%
!!! TGGTATTGGTCAATTTGTTT+TGG + chr5_3:53240907-53240926 Msa0817810:intron 30.0%
TTTAAGCTTGCATTCATTTG+TGG + chr5_3:53241247-53241266 Msa0817810:intron 30.0%
!! GTTTTAGCAAGATTGTTTCT+TGG + chr5_3:53241358-53241377 Msa0817810:intron 30.0%
! GAGAATTTCTTTTGCCATAT+GGG + chr5_3:53241495-53241514 Msa0817810:CDS 30.0%
! AGAATTTCTTTTGCCATATG+GGG + chr5_3:53241496-53241515 Msa0817810:CDS 30.0%
TATTAAATGTGATGACTGAG+TGG - chr5_3:53241659-53241678 None:intergenic 30.0%
! AAAAGTGAAACATGATTTGC+CGG + chr5_3:53241696-53241715 Msa0817810:intron 30.0%
TTAATGTTGTGTGTCTAAAG+AGG - chr5_3:53241830-53241849 None:intergenic 30.0%
CAAGTGAATGAAACCAAATT+TGG - chr5_3:53241902-53241921 None:intergenic 30.0%
! CTTTGAATCGGATTCTAAAA+TGG - chr5_3:53241948-53241967 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG - chr5_3:53242034-53242053 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG + chr5_3:53242032-53242051 Msa0817810:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG - chr5_3:53242352-53242371 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG - chr5_3:53242475-53242494 None:intergenic 30.0%
AGTTATGAGTGCTTATGAAA+AGG - chr5_3:53242679-53242698 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG + chr5_3:53242692-53242711 Msa0817810:intron 30.0%
AAGGAAGGCAATGATATAAA+TGG - chr5_3:53242900-53242919 None:intergenic 30.0%
CTAACTTAAGTCTATTTCAC+AGG + chr5_3:53242943-53242962 Msa0817810:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG + chr5_3:53243020-53243039 Msa0817810:CDS 30.0%
TAATGATGTAGCTTTCTACT+GGG + chr5_3:53243021-53243040 Msa0817810:CDS 30.0%
! TCAGTTATTTCATCTGATAG+AGG - chr5_3:53243085-53243104 None:intergenic 30.0%
GTTTCATCTATAAATGGGAA+AGG - chr5_3:53243178-53243197 None:intergenic 30.0%
CAAGGGTTTCATCTATAAAT+GGG - chr5_3:53243183-53243202 None:intergenic 30.0%
AATGTATCAAAACATACCCT+TGG + chr5_3:53243303-53243322 Msa0817810:three_prime_UTR 30.0%
! AAGTTTTGCAAATGAACCAA+GGG - chr5_3:53243322-53243341 None:intergenic 30.0%
TTAAGAACTGAAGTTGAGGT+AGG - chr5_3:53234837-53234856 None:intergenic 35.0%
GAAGTTAAGAACTGAAGTTG+AGG - chr5_3:53234841-53234860 None:intergenic 35.0%
! CATTCCTTTTTAATGGCGTT+AGG + chr5_3:53234881-53234900 Msa0817810:five_prime_UTR 35.0%
AAACCCTAACGCCATTAAAA+AGG - chr5_3:53234888-53234907 None:intergenic 35.0%
! GAGATTCATGGTTTTCGATT+TGG - chr5_3:53234937-53234956 None:intergenic 35.0%
TGTAGTGTTAATGAGTCTGA+TGG + chr5_3:53235122-53235141 Msa0817810:CDS 35.0%
TGATTACAAGCTATGAAGCA+CGG + chr5_3:53235352-53235371 Msa0817810:intron 35.0%
ACACTTAAGTGTGGAAAAGT+GGG + chr5_3:53235674-53235693 Msa0817810:intron 35.0%
!!! TCATCGATGTAGTTTTGTTG+AGG + chr5_3:53235766-53235785 Msa0817810:intron 35.0%
CTTCCCTGACATAAACATAT+TGG + chr5_3:53235890-53235909 Msa0817810:intron 35.0%
TGCCCAATATGTTTATGTCA+GGG - chr5_3:53235896-53235915 None:intergenic 35.0%
TTGCCCAATATGTTTATGTC+AGG - chr5_3:53235897-53235916 None:intergenic 35.0%
CATAAACATATTGGGCAATG+TGG + chr5_3:53235899-53235918 Msa0817810:intron 35.0%
GGCGTTAATCTAAACAGAAA+AGG + chr5_3:53235983-53236002 Msa0817810:intron 35.0%
! GTGATCAACCACAAATTTTC+AGG + chr5_3:53236088-53236107 Msa0817810:intron 35.0%
! CTTGAAGAATTTAAGATCCC+AGG + chr5_3:53236324-53236343 Msa0817810:intron 35.0%
!! TTAAGTTGGATATGGGTTGT+GGG + chr5_3:53236395-53236414 Msa0817810:intron 35.0%
GAAAAGGAAACAGACACAAA+GGG + chr5_3:53236479-53236498 Msa0817810:intron 35.0%
GAGTCAAGAAACCAAGTATA+TGG + chr5_3:53237293-53237312 Msa0817810:intron 35.0%
AGTATAGATACTTTCGCTGT+AGG - chr5_3:53237327-53237346 None:intergenic 35.0%
!!! ATTTCTTTTCACTCTGGAGT+TGG + chr5_3:53237369-53237388 Msa0817810:intron 35.0%
!!! TTTCTTTTCACTCTGGAGTT+GGG + chr5_3:53237370-53237389 Msa0817810:intron 35.0%
GTTTGTATGGTAACACAACT+TGG + chr5_3:53237400-53237419 Msa0817810:intron 35.0%
TTGTATGGTAACACAACTTG+GGG + chr5_3:53237402-53237421 Msa0817810:intron 35.0%
TCTGCTCTACAATTTCTTTG+TGG + chr5_3:53237533-53237552 Msa0817810:intron 35.0%
TGACAACTCTCAAACAAATG+TGG + chr5_3:53237702-53237721 Msa0817810:intron 35.0%
TGTTAAACCAGAATTGGTGA+TGG + chr5_3:53237752-53237771 Msa0817810:intron 35.0%
! GTTAAACCAGAATTGGTGAT+GGG + chr5_3:53237753-53237772 Msa0817810:intron 35.0%
ATCTTGGCAAATGTGTATTG+GGG - chr5_3:53237787-53237806 None:intergenic 35.0%
CAATCTTGGCAAATGTGTAT+TGG - chr5_3:53237789-53237808 None:intergenic 35.0%
ATACACATTTGCCAAGATTG+AGG + chr5_3:53237789-53237808 Msa0817810:intron 35.0%
GTGTCAAATATCCTCAATCT+TGG - chr5_3:53237803-53237822 None:intergenic 35.0%
TTTGACACCGTAAAGACTAA+TGG + chr5_3:53237815-53237834 Msa0817810:intron 35.0%
!! AAACACGCCATTAGTCTTTA+CGG - chr5_3:53237825-53237844 None:intergenic 35.0%
TAAAGACTAATGGCGTGTTT+GGG + chr5_3:53237825-53237844 Msa0817810:intron 35.0%
!! GGTAACATAATGGATGTTGA+AGG + chr5_3:53237866-53237885 Msa0817810:intron 35.0%
TCACTTGAGTAGAAGTTTGA+TGG + chr5_3:53237987-53238006 Msa0817810:intron 35.0%
TGCAAGGTGTATAGTACATA+AGG + chr5_3:53238023-53238042 Msa0817810:intron 35.0%
GCAAGGTGTATAGTACATAA+GGG + chr5_3:53238024-53238043 Msa0817810:intron 35.0%
TTCTGATACTCATCCATCTT+TGG + chr5_3:53238320-53238339 Msa0817810:intron 35.0%
CTTTACAGCCAATGAATAAG+TGG - chr5_3:53238396-53238415 None:intergenic 35.0%
TCACATGACCCTTTATATAG+TGG - chr5_3:53238430-53238449 None:intergenic 35.0%
ATTCCTTGTAACTCTTGAGT+AGG + chr5_3:53238531-53238550 Msa0817810:intron 35.0%
TTCCTTGTAACTCTTGAGTA+GGG + chr5_3:53238532-53238551 Msa0817810:intron 35.0%
AGTAGGGTATACGAATCTTT+GGG + chr5_3:53238548-53238567 Msa0817810:intron 35.0%
CTTAATTGCAACTGAAAAGG+GGG - chr5_3:53238809-53238828 None:intergenic 35.0%
GCTTAATTGCAACTGAAAAG+GGG - chr5_3:53238810-53238829 None:intergenic 35.0%
AAAAATCAGGTCCTGTTTCA+AGG - chr5_3:53239007-53239026 None:intergenic 35.0%
AATATAATCACCTTCACACC+TGG - chr5_3:53239305-53239324 None:intergenic 35.0%
ATTACATCATCCAGTTGTTG+AGG - chr5_3:53239426-53239445 None:intergenic 35.0%
TCTGGTTGTAAAGTAGTTCT+TGG - chr5_3:53239869-53239888 None:intergenic 35.0%
GAGTATGAAGTGACAAGAAA+AGG - chr5_3:53240105-53240124 None:intergenic 35.0%
! CCACATGACAATGTTTTGTA+GGG - chr5_3:53240154-53240173 None:intergenic 35.0%
! ACCACATGACAATGTTTTGT+AGG - chr5_3:53240155-53240174 None:intergenic 35.0%
GTCCTAACAAATACCATGTT+TGG + chr5_3:53240235-53240254 Msa0817810:intron 35.0%
ACCCAAACATGGTATTTGTT+AGG - chr5_3:53240240-53240259 None:intergenic 35.0%
AATTCTGTTCCACCTTTCAT+AGG + chr5_3:53240336-53240355 Msa0817810:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG - chr5_3:53240510-53240529 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG + chr5_3:53240510-53240529 Msa0817810:CDS 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG - chr5_3:53240563-53240582 None:intergenic 35.0%
!! TTTGGTGACATGTACGATTT+TGG + chr5_3:53240887-53240906 Msa0817810:intron 35.0%
!! GACATGTACGATTTTGGTAT+TGG + chr5_3:53240893-53240912 Msa0817810:intron 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG + chr5_3:53241000-53241019 Msa0817810:CDS 35.0%
! TTTGTTATACCTCCAAGTGA+CGG + chr5_3:53241122-53241141 Msa0817810:CDS 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG - chr5_3:53241406-53241425 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG + chr5_3:53241494-53241513 Msa0817810:CDS 35.0%
TTGATCTTGACTCTTAGGTT+TGG + chr5_3:53241550-53241569 Msa0817810:intron 35.0%
ATCTCAAATGGAACAACCAT+TGG - chr5_3:53241576-53241595 None:intergenic 35.0%
!!! TGATTTGCCGGTTTCTTTTT+TGG + chr5_3:53241708-53241727 Msa0817810:intron 35.0%
TTTCGGTCCAAAAAAGAAAC+CGG - chr5_3:53241718-53241737 None:intergenic 35.0%
GATCCTATTCGTATGTCTTT+CGG - chr5_3:53241735-53241754 None:intergenic 35.0%
AGTTGCTCATAACCTTGTTA+GGG - chr5_3:53241796-53241815 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTA+TGG + chr5_3:53241906-53241925 Msa0817810:intron 35.0%
!! TGAATCGGATTCTAAAATGG+TGG - chr5_3:53241945-53241964 None:intergenic 35.0%
CATTTAATCCAAACAGCTCT+CGG + chr5_3:53242159-53242178 Msa0817810:intron 35.0%
! TGGTTCTATATAGTCTATGG+CGG - chr5_3:53242349-53242368 None:intergenic 35.0%
AACACTCATTAATCTGGCTA+TGG - chr5_3:53242369-53242388 None:intergenic 35.0%
!!! AAAACCTTATTTTTCGCTGC+AGG - chr5_3:53242400-53242419 None:intergenic 35.0%
TAGGACAACTTAAGGAAAAG+AGG + chr5_3:53242500-53242519 Msa0817810:intron 35.0%
AAACAAGAGTGAGAGACAAA+GGG - chr5_3:53242580-53242599 None:intergenic 35.0%
AAAACAAGAGTGAGAGACAA+AGG - chr5_3:53242581-53242600 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG + chr5_3:53242695-53242714 Msa0817810:intron 35.0%
CTCGAGAGGATTAAAGAATT+TGG - chr5_3:53242728-53242747 None:intergenic 35.0%
CTGATATTCTTCTTGCAAAG+AGG + chr5_3:53243049-53243068 Msa0817810:CDS 35.0%
TCATCTGATAGAGGAGAAAT+TGG - chr5_3:53243076-53243095 None:intergenic 35.0%
! GGAATAACAGTTTTGCTCTT+AGG + chr5_3:53243130-53243149 Msa0817810:CDS 35.0%
TCTATAAATGGGAAAGGGTA+TGG - chr5_3:53243172-53243191 None:intergenic 35.0%
GCAAGGGTTTCATCTATAAA+TGG - chr5_3:53243184-53243203 None:intergenic 35.0%
!! CTGTTTCTAGAAACTTGCAA+GGG - chr5_3:53243200-53243219 None:intergenic 35.0%
!! ACTGTTTCTAGAAACTTGCA+AGG - chr5_3:53243201-53243220 None:intergenic 35.0%
! TTGCAAGTTTCTAGAAACAG+TGG + chr5_3:53243200-53243219 Msa0817810:exon 35.0%
! TTTGAAACTCAGTATACGGT+AGG + chr5_3:53243274-53243293 Msa0817810:three_prime_UTR 35.0%
! GAAGTTTTGCAAATGAACCA+AGG - chr5_3:53243323-53243342 None:intergenic 35.0%
AAGTTGAGGTAGGAAGAAGA+AGG - chr5_3:53234827-53234846 None:intergenic 40.0%
TGAAGGTAGTGAGAGATTCA+TGG - chr5_3:53234949-53234968 None:intergenic 40.0%
! TTGAAAGCAAGAAGTGCAGT+GGG - chr5_3:53235000-53235019 None:intergenic 40.0%
! ATTGAAAGCAAGAAGTGCAG+TGG - chr5_3:53235001-53235020 None:intergenic 40.0%
TTGAAGTTGAATCCTCCTAC+AGG + chr5_3:53235074-53235093 Msa0817810:CDS 40.0%
CTTCTTCTTCTTCTTCCTGT+AGG - chr5_3:53235092-53235111 None:intergenic 40.0%
CAGGAAGAAGAAGAAGAAGA+CGG + chr5_3:53235093-53235112 Msa0817810:CDS 40.0%
ATTGGATTCGTTATGAGTGG+TGG + chr5_3:53235306-53235325 Msa0817810:intron 40.0%
TGAAGCACGGAAACAAACAT+TGG + chr5_3:53235365-53235384 Msa0817810:intron 40.0%
CACACTTAAGTGTGGAAAAG+TGG + chr5_3:53235673-53235692 Msa0817810:intron 40.0%
TGTGGAAAAGTGGGTAATCT+GGG + chr5_3:53235683-53235702 Msa0817810:intron 40.0%
GAAGTATGTTGATACGCAAC+GGG - chr5_3:53235716-53235735 None:intergenic 40.0%
! GGAAGTATGTTGATACGCAA+CGG - chr5_3:53235717-53235736 None:intergenic 40.0%
TTGAGTTACGTATGCTGTCA+AGG + chr5_3:53235932-53235951 Msa0817810:intron 40.0%
GTTGATCACGTCCAAATTTG+TGG - chr5_3:53236077-53236096 None:intergenic 40.0%
GTCCCAAATGATGTTGTGAA+GGG + chr5_3:53236346-53236365 Msa0817810:intron 40.0%
CTCCCTTCACAACATCATTT+GGG - chr5_3:53236351-53236370 None:intergenic 40.0%
ACTCCCTTCACAACATCATT+TGG - chr5_3:53236352-53236371 None:intergenic 40.0%
!! CTTAAGTTGGATATGGGTTG+TGG + chr5_3:53236394-53236413 Msa0817810:intron 40.0%
AGGAAAGAAAGTGAGAGAAG+TGG + chr5_3:53236441-53236460 Msa0817810:intron 40.0%
GGAAAAGGAAACAGACACAA+AGG + chr5_3:53236478-53236497 Msa0817810:intron 40.0%
TGGAGAAACACAATCTTTGG+AGG + chr5_3:53236845-53236864 Msa0817810:CDS 40.0%
TTTAGCTGTTCTGCATCTAC+AGG - chr5_3:53236897-53236916 None:intergenic 40.0%
!! TCCAAAAGCGCTATTGCTTA+TGG + chr5_3:53237064-53237083 Msa0817810:intron 40.0%
!! CCAAAAGCGCTATTGCTTAT+GGG + chr5_3:53237065-53237084 Msa0817810:intron 40.0%
GTCCACTTCTTCATTGTTGA+AGG + chr5_3:53237209-53237228 Msa0817810:intron 40.0%
GTCCTTCAACAATGAAGAAG+TGG - chr5_3:53237214-53237233 None:intergenic 40.0%
ATAGATACTTTCGCTGTAGG+TGG - chr5_3:53237324-53237343 None:intergenic 40.0%
!! AGTTTGTTGGAGTGTTTCCA+TGG + chr5_3:53237475-53237494 Msa0817810:intron 40.0%
GCAGCTATTTATTGTGTCCA+TGG - chr5_3:53237495-53237514 None:intergenic 40.0%
GTAAAGACTAATGGCGTGTT+TGG + chr5_3:53237824-53237843 Msa0817810:intron 40.0%
AAAGACTAATGGCGTGTTTG+GGG + chr5_3:53237826-53237845 Msa0817810:intron 40.0%
!! GTGTTTGGGGATTTCAAGTT+AGG + chr5_3:53237839-53237858 Msa0817810:intron 40.0%
!! GGGGATTTCAAGTTAGGAAA+TGG + chr5_3:53237845-53237864 Msa0817810:intron 40.0%
! GAAGTTTGATGGTCCAAAGT+AGG + chr5_3:53237998-53238017 Msa0817810:intron 40.0%
TACACCTTGCAAACCTACTT+TGG - chr5_3:53238014-53238033 None:intergenic 40.0%
GTGTATAGTACATAAGGGCT+TGG + chr5_3:53238029-53238048 Msa0817810:intron 40.0%
ACAACCCGCCACTATATAAA+GGG + chr5_3:53238419-53238438 Msa0817810:intron 40.0%
ATGACCCTTTATATAGTGGC+GGG - chr5_3:53238426-53238445 None:intergenic 40.0%
CATGACCCTTTATATAGTGG+CGG - chr5_3:53238427-53238446 None:intergenic 40.0%
TACCCTACTCAAGAGTTACA+AGG - chr5_3:53238537-53238556 None:intergenic 40.0%
GAGTAGGGTATACGAATCTT+TGG + chr5_3:53238547-53238566 Msa0817810:intron 40.0%
GTAGGGTATACGAATCTTTG+GGG + chr5_3:53238549-53238568 Msa0817810:intron 40.0%
ATTTGGTTGGACTGTTTCCA+TGG + chr5_3:53238639-53238658 Msa0817810:intron 40.0%
TTGCTTGATGAAAATGCTCC+TGG + chr5_3:53238882-53238901 Msa0817810:intron 40.0%
CTCAATGTGAAACTGAAACC+AGG - chr5_3:53238903-53238922 None:intergenic 40.0%
CTGGTTTCAGTTTCACATTG+AGG + chr5_3:53238901-53238920 Msa0817810:intron 40.0%
GATAACATAGAAGTTGCCAG+TGG + chr5_3:53239269-53239288 Msa0817810:CDS 40.0%
AGGCTGTTAGGGACATATAA+AGG - chr5_3:53239406-53239425 None:intergenic 40.0%
!! AGGTCTTGTTGCATGAAGAT+TGG + chr5_3:53239577-53239596 Msa0817810:intron 40.0%
!! GGTCTTGTTGCATGAAGATT+GGG + chr5_3:53239578-53239597 Msa0817810:intron 40.0%
TATTCAAAGGAAACCTGCGA+GGG + chr5_3:53239629-53239648 Msa0817810:intron 40.0%
TTTCCTTCTAGTCAATCCTG+AGG + chr5_3:53239817-53239836 Msa0817810:CDS 40.0%
AGTAGTTCTTGGAACGACAA+CGG - chr5_3:53239858-53239877 None:intergenic 40.0%
AAGTAAGTACGAGTTGTCTC+TGG - chr5_3:53239887-53239906 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG + chr5_3:53239981-53240000 Msa0817810:intron 40.0%
CCCTACAAAACATTGTCATG+TGG + chr5_3:53240151-53240170 Msa0817810:intron 40.0%
CATACAACCTGTCTTTACTC+TGG + chr5_3:53240366-53240385 Msa0817810:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG - chr5_3:53240376-53240395 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG - chr5_3:53240458-53240477 None:intergenic 40.0%
ATTATCGGGGTACATGAACT+TGG + chr5_3:53240523-53240542 Msa0817810:CDS 40.0%
!! TTTCTAGTTGCCCAAAACCT+TGG + chr5_3:53240550-53240569 Msa0817810:CDS 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG - chr5_3:53240564-53240583 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG + chr5_3:53240562-53240581 Msa0817810:CDS 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG + chr5_3:53240978-53240997 Msa0817810:intron 40.0%
AACAAGACCCAATGCAAATC+CGG - chr5_3:53241087-53241106 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+TGG + chr5_3:53241173-53241192 Msa0817810:CDS 40.0%
!! GTTTCTTGGTAACGTTCTCA+AGG + chr5_3:53241372-53241391 Msa0817810:CDS 40.0%
TATCAACCCTCTTGTGATCT+GGG + chr5_3:53241411-53241430 Msa0817810:CDS 40.0%
!! TACTGTTGATGGCATTGATG+AGG - chr5_3:53241450-53241469 None:intergenic 40.0%
! TTTTGCCATATGGGGAAGAA+AGG + chr5_3:53241504-53241523 Msa0817810:CDS 40.0%
GAGTTGCTCATAACCTTGTT+AGG - chr5_3:53241797-53241816 None:intergenic 40.0%
AAGGTTATGAGCAACTCCAT+TGG + chr5_3:53241800-53241819 Msa0817810:intron 40.0%
AGGTTATGAGCAACTCCATT+GGG + chr5_3:53241801-53241820 Msa0817810:intron 40.0%
!! GATTCTAAAATGGTGGTGGA+TGG - chr5_3:53241938-53241957 None:intergenic 40.0%
!! ATCGGATTCTAAAATGGTGG+TGG - chr5_3:53241942-53241961 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG - chr5_3:53242022-53242041 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG - chr5_3:53242023-53242042 None:intergenic 40.0%
! ATATGCATCTGGAATGAGCA+TGG - chr5_3:53242090-53242109 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG - chr5_3:53242101-53242120 None:intergenic 40.0%
CAAACCTGCAGCGAAAAATA+AGG + chr5_3:53242393-53242412 Msa0817810:intron 40.0%
! AGCTGTATTGCTGTCAGTTT+TGG + chr5_3:53242430-53242449 Msa0817810:intron 40.0%
! ATATGGCTTGCAGAATACCT+CGG - chr5_3:53242458-53242477 None:intergenic 40.0%
GTTGTCCTAGAAGCGAAAAA+TGG - chr5_3:53242489-53242508 None:intergenic 40.0%
!! TTCGCTTCTAGGACAACTTA+AGG + chr5_3:53242492-53242511 Msa0817810:intron 40.0%
AATCAAGCAAGGAGAACACT+TGG - chr5_3:53242526-53242545 None:intergenic 40.0%
TGAGTGTCCTTATGTCTGTA+CGG - chr5_3:53242555-53242574 None:intergenic 40.0%
AACAAGAGTGAGAGACAAAG+GGG - chr5_3:53242579-53242598 None:intergenic 40.0%
! TTGGTGGCACCTTTAAATCT+TGG + chr5_3:53242648-53242667 Msa0817810:intron 40.0%
! AAGGTGCCACCAAGATTTAA+AGG - chr5_3:53242641-53242660 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG + chr5_3:53242698-53242717 Msa0817810:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG - chr5_3:53242742-53242761 None:intergenic 40.0%
CATGCAGGTACATAATCAAG+AGG - chr5_3:53242800-53242819 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG + chr5_3:53242983-53243002 Msa0817810:CDS 40.0%
AGAGCAACATACTTGTCATC+AGG - chr5_3:53243109-53243128 None:intergenic 40.0%
GATGACAAGTATGTTGCTCT+CGG + chr5_3:53243109-53243128 Msa0817810:CDS 40.0%
AACATTTCGCACTGAACAAC+TGG - chr5_3:53243417-53243436 None:intergenic 40.0%
CTTCTTCTTCTTCCTGTAGG+AGG - chr5_3:53235089-53235108 None:intergenic 45.0%
! GTCTGATGGTGATAAAGACG+AGG + chr5_3:53235136-53235155 Msa0817810:CDS 45.0%
! CGTTATGAGTGGTGGCATTT+TGG + chr5_3:53235314-53235333 Msa0817810:intron 45.0%
GAGACTCACACACTTAAGTG+TGG + chr5_3:53235665-53235684 Msa0817810:intron 45.0%
GTGTGGAAAAGTGGGTAATC+TGG + chr5_3:53235682-53235701 Msa0817810:intron 45.0%
GTGGAAAAGTGGGTAATCTG+GGG + chr5_3:53235684-53235703 Msa0817810:intron 45.0%
! CACAACATCATTTGGGACCT+GGG - chr5_3:53236344-53236363 None:intergenic 45.0%
! TCACAACATCATTTGGGACC+TGG - chr5_3:53236345-53236364 None:intergenic 45.0%
GGTCCCAAATGATGTTGTGA+AGG + chr5_3:53236345-53236364 Msa0817810:intron 45.0%
! CCCATAAGCAATAGCGCTTT+TGG - chr5_3:53237068-53237087 None:intergenic 45.0%
! ACACCCCACAACTCTAAAGA+AGG + chr5_3:53237232-53237251 Msa0817810:intron 45.0%
! CACCCCACAACTCTAAAGAA+GGG + chr5_3:53237233-53237252 Msa0817810:intron 45.0%
!! AGCCCTTCTTTAGAGTTGTG+GGG - chr5_3:53237238-53237257 None:intergenic 45.0%
!! GAGCCCTTCTTTAGAGTTGT+GGG - chr5_3:53237239-53237258 None:intergenic 45.0%
!! AGAGCCCTTCTTTAGAGTTG+TGG - chr5_3:53237240-53237259 None:intergenic 45.0%
AGGTGGATCACCCATATACT+TGG - chr5_3:53237307-53237326 None:intergenic 45.0%
GTTGGGCACTCAAGTTTGTA+TGG + chr5_3:53237387-53237406 Msa0817810:intron 45.0%
TATGGTAACACAACTTGGGG+TGG + chr5_3:53237405-53237424 Msa0817810:intron 45.0%
TTGCGTGTGTTTCCCAATAG+AGG + chr5_3:53237562-53237581 Msa0817810:intron 45.0%
GTAGAACCCATCACCAATTC+TGG - chr5_3:53237762-53237781 None:intergenic 45.0%
ACATATGAACTGCAGCATCG+TGG - chr5_3:53237916-53237935 None:intergenic 45.0%
TTCATATGTCCCAGGATGCA+AGG + chr5_3:53237927-53237946 Msa0817810:intron 45.0%
TGATGCCAACATCGTCTCTT+TGG + chr5_3:53237954-53237973 Msa0817810:intron 45.0%
TCTCTCCAAAGAGACGATGT+TGG - chr5_3:53237962-53237981 None:intergenic 45.0%
TGGTCCAAAGTAGGTTTGCA+AGG + chr5_3:53238007-53238026 Msa0817810:intron 45.0%
CACAACCCGCCACTATATAA+AGG + chr5_3:53238418-53238437 Msa0817810:intron 45.0%
GAGAAATGAGCATGTGTGAG+CGG + chr5_3:53238469-53238488 Msa0817810:intron 45.0%
TGTGTGAGCGGTCATGTATT+AGG + chr5_3:53238481-53238500 Msa0817810:intron 45.0%
AGGGAGAATGCCTCTAACAT+AGG - chr5_3:53239343-53239362 None:intergenic 45.0%
TCCAGTTGTTGAGGCTGTTA+GGG - chr5_3:53239417-53239436 None:intergenic 45.0%
ATCCAGTTGTTGAGGCTGTT+AGG - chr5_3:53239418-53239437 None:intergenic 45.0%
AACAAGCCAAGATCCTTACG+AGG + chr5_3:53239512-53239531 Msa0817810:CDS 45.0%
! TGGGTCCTGATTTTTCTGCT+AGG + chr5_3:53239597-53239616 Msa0817810:intron 45.0%
! GGGTCCTGATTTTTCTGCTA+GGG + chr5_3:53239598-53239617 Msa0817810:intron 45.0%
! TCCTGATTTTTCTGCTAGGG+TGG + chr5_3:53239601-53239620 Msa0817810:intron 45.0%
TCCACCCTAGCAGAAAAATC+AGG - chr5_3:53239605-53239624 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+AGG + chr5_3:53239616-53239635 Msa0817810:intron 45.0%
CTATTCAAAGGAAACCTGCG+AGG + chr5_3:53239628-53239647 Msa0817810:intron 45.0%
!! TTTTAGAAGCTTTCCCTCGC+AGG - chr5_3:53239645-53239664 None:intergenic 45.0%
CATCCTCAGGATTGACTAGA+AGG - chr5_3:53239823-53239842 None:intergenic 45.0%
TTAGCTGTACCTGAGTGGTT+TGG + chr5_3:53239986-53240005 Msa0817810:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG + chr5_3:53240481-53240500 Msa0817810:CDS 45.0%
TGCCAGCTAGGAACAAAGTA+CGG - chr5_3:53240592-53240611 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG - chr5_3:53240604-53240623 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG + chr5_3:53241076-53241095 Msa0817810:CDS 45.0%
CCAATTGCCGGATTTGCATT+GGG + chr5_3:53241077-53241096 Msa0817810:CDS 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG + chr5_3:53241098-53241117 Msa0817810:CDS 45.0%
ATACCTCCAAGTGACGGTAT+TGG + chr5_3:53241128-53241147 Msa0817810:CDS 45.0%
ACAACACCAATACCGTCACT+TGG - chr5_3:53241137-53241156 None:intergenic 45.0%
!! CTTGGTAACGTTCTCAAGGA+AGG + chr5_3:53241376-53241395 Msa0817810:CDS 45.0%
CTATCAACCCTCTTGTGATC+TGG + chr5_3:53241410-53241429 Msa0817810:CDS 45.0%
ATTCCCGCTGGAGAAATTGA+TGG + chr5_3:53241469-53241488 Msa0817810:CDS 45.0%
CGATACCTTTCTTCCCCATA+TGG - chr5_3:53241512-53241531 None:intergenic 45.0%
TGACTCTTAGGTTTGGCCAA+TGG + chr5_3:53241557-53241576 Msa0817810:intron 45.0%
GGACCGAAAGACATACGAAT+AGG + chr5_3:53241729-53241748 Msa0817810:intron 45.0%
TGCTCATAACCTTGTTAGGG+CGG - chr5_3:53241793-53241812 None:intergenic 45.0%
TGTCTAAAGAGGCAACCCAA+TGG - chr5_3:53241819-53241838 None:intergenic 45.0%
GTCTTTGGCATGCAATGATC+TGG - chr5_3:53242000-53242019 None:intergenic 45.0%
! GTTGCGTTTTCTCAGTACAC+AGG - chr5_3:53242129-53242148 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG - chr5_3:53242191-53242210 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG - chr5_3:53242219-53242238 None:intergenic 45.0%
!! TATGCTTTGGGAGTCCATTC+AGG - chr5_3:53242316-53242335 None:intergenic 45.0%
GGAGTCGAATGCTATGCTTT+GGG - chr5_3:53242328-53242347 None:intergenic 45.0%
!! AGCCACCATTTTTCGCTTCT+AGG + chr5_3:53242481-53242500 Msa0817810:intron 45.0%
GTCCTAGAAGCGAAAAATGG+TGG - chr5_3:53242486-53242505 None:intergenic 45.0%
TACGGTTTGCGAATCAAGCA+AGG - chr5_3:53242537-53242556 None:intergenic 45.0%
TCGCAAACCGTACAGACATA+AGG + chr5_3:53242545-53242564 Msa0817810:intron 45.0%
GTGGCACCTTTAAATCTTGG+TGG + chr5_3:53242651-53242670 Msa0817810:intron 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG - chr5_3:53242710-53242729 None:intergenic 45.0%
ACACTCTGGCAACATCACTA+TGG + chr5_3:53243233-53243252 Msa0817810:three_prime_UTR 45.0%
!!! AAAACTTTTTATTTTTATAT+AGG + chr5_3:53236608-53236627 Msa0817810:intron 5.0%
AAGAAGAAGGAAGTGACGCG+AGG - chr5_3:53234814-53234833 None:intergenic 50.0%
ACGCGGAAAGTTGAAGGTGA+AGG - chr5_3:53234966-53234985 None:intergenic 50.0%
AGTGTGTGAGTCTCATCACC+AGG - chr5_3:53235659-53235678 None:intergenic 50.0%
TGCACGACGGAAAGAGTTAG+AGG + chr5_3:53236421-53236440 Msa0817810:intron 50.0%
GGAAACAGACACAAAGGGTG+AGG + chr5_3:53236484-53236503 Msa0817810:intron 50.0%
AACAGACACAAAGGGTGAGG+AGG + chr5_3:53236487-53236506 Msa0817810:intron 50.0%
! TGGAGGGTTACTTTGCTCAG+AGG - chr5_3:53236874-53236893 None:intergenic 50.0%
GTTCTGCATCTACAGGTGGA+GGG - chr5_3:53236890-53236909 None:intergenic 50.0%
TGTTCTGCATCTACAGGTGG+AGG - chr5_3:53236891-53236910 None:intergenic 50.0%
AGCTGTTCTGCATCTACAGG+TGG - chr5_3:53236894-53236913 None:intergenic 50.0%
TGCTGCAGTTCATATGTCCC+AGG + chr5_3:53237919-53237938 Msa0817810:intron 50.0%
CATCAGCAACCTTGCATCCT+GGG - chr5_3:53237939-53237958 None:intergenic 50.0%
! GGGTATACGAATCTTTGGGG+TGG + chr5_3:53238552-53238571 Msa0817810:intron 50.0%
!! CTTTGGGGTGGTACACATAG+TGG + chr5_3:53238564-53238583 Msa0817810:intron 50.0%
! GGTGGTACACATAGTGGAGA+GGG + chr5_3:53238570-53238589 Msa0817810:intron 50.0%
TTGGACTGTTTCCATGGACG+TGG + chr5_3:53238645-53238664 Msa0817810:intron 50.0%
TGGACTGTTTCCATGGACGT+GGG + chr5_3:53238646-53238665 Msa0817810:intron 50.0%
! GACACTTTTACCCACGTCCA+TGG - chr5_3:53238659-53238678 None:intergenic 50.0%
TCCCTAACAGCCTCAACAAC+TGG + chr5_3:53239413-53239432 Msa0817810:intron 50.0%
CACACACCTCGTAAGGATCT+TGG - chr5_3:53239521-53239540 None:intergenic 50.0%
AGATAGGCACACACCTCGTA+AGG - chr5_3:53239528-53239547 None:intergenic 50.0%
TCCTGAGGATGATAAGCCAG+TGG + chr5_3:53239832-53239851 Msa0817810:CDS 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG + chr5_3:53240001-53240020 Msa0817810:CDS 50.0%
GGACTCCAAGCTTAACTCCA+AGG - chr5_3:53240570-53240589 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG + chr5_3:53240587-53240606 Msa0817810:CDS 50.0%
GCCAGCTAGGAACAAAGTAC+GGG - chr5_3:53240591-53240610 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG + chr5_3:53240591-53240610 Msa0817810:CDS 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG + chr5_3:53240987-53241006 Msa0817810:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG + chr5_3:53241053-53241072 Msa0817810:CDS 50.0%
CCCAATGCAAATCCGGCAAT+TGG - chr5_3:53241080-53241099 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG - chr5_3:53241134-53241153 None:intergenic 50.0%
!! CACGAGTCATTTCTAGCTGG+CGG + chr5_3:53241176-53241195 Msa0817810:CDS 50.0%
!! TCATTTCTAGCTGGCGGCAT+TGG + chr5_3:53241182-53241201 Msa0817810:CDS 50.0%
TCCAGCGGGAATACTGTTGA+TGG - chr5_3:53241461-53241480 None:intergenic 50.0%
CCTCCATCAATTTCTCCAGC+GGG - chr5_3:53241475-53241494 None:intergenic 50.0%
CCCTCCATCAATTTCTCCAG+CGG - chr5_3:53241476-53241495 None:intergenic 50.0%
CCGCTGGAGAAATTGATGGA+GGG + chr5_3:53241473-53241492 Msa0817810:CDS 50.0%
CATTGCATGCCAAAGACCCA+AGG + chr5_3:53242003-53242022 Msa0817810:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG - chr5_3:53242015-53242034 None:intergenic 50.0%
! TACACAGGAGGCATAGGTCT+TGG - chr5_3:53242114-53242133 None:intergenic 50.0%
! TCTCAGTACACAGGAGGCAT+AGG - chr5_3:53242120-53242139 None:intergenic 50.0%
! GCGTTTTCTCAGTACACAGG+AGG - chr5_3:53242126-53242145 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG - chr5_3:53242205-53242224 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG - chr5_3:53242240-53242259 None:intergenic 50.0%
AGACTTGGCAAGCTGGAACA+CGG - chr5_3:53242259-53242278 None:intergenic 50.0%
! GGAGAAGCCAGACCAGATTT+TGG - chr5_3:53242295-53242314 None:intergenic 50.0%
CGGAGTCGAATGCTATGCTT+TGG - chr5_3:53242329-53242348 None:intergenic 50.0%
!!! TGCTGTCAGTTTTGGTTCCG+AGG + chr5_3:53242438-53242457 Msa0817810:intron 50.0%
CAGGCTTCAATTCGCTTCAC+AGG + chr5_3:53242962-53242981 Msa0817810:intron 50.0%
GTTGCCAGAGTGTATGCATG+TGG - chr5_3:53243226-53243245 None:intergenic 50.0%
GGAACGACGCGGAAAGTTGA+AGG - chr5_3:53234972-53234991 None:intergenic 55.0%
! CAAGAAGTGCAGTGGGAGAG+AGG - chr5_3:53234993-53235012 None:intergenic 55.0%
GGGTTGTGGGTAATGCACGA+CGG + chr5_3:53236408-53236427 Msa0817810:intron 55.0%
GCATCAGCAACCTTGCATCC+TGG - chr5_3:53237940-53237959 None:intergenic 55.0%
! GGGTGGTACACATAGTGGAG+AGG + chr5_3:53238569-53238588 Msa0817810:intron 55.0%
ATCACCTCTGCCAGGTGTGA+AGG + chr5_3:53239292-53239311 Msa0817810:CDS 55.0%
ATCACCTTCACACCTGGCAG+AGG - chr5_3:53239299-53239318 None:intergenic 55.0%
!! GCCACTGGCTTATCATCCTC+AGG - chr5_3:53239836-53239855 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG - chr5_3:53240044-53240063 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG - chr5_3:53240498-53240517 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG - chr5_3:53240502-53240521 None:intergenic 55.0%
ACCCTCTTGTGATCTGGGCT+TGG + chr5_3:53241416-53241435 Msa0817810:CDS 55.0%
CCCAAGCCCAGATCACAAGA+GGG - chr5_3:53241420-53241439 None:intergenic 55.0%
CCCTCTTGTGATCTGGGCTT+GGG + chr5_3:53241417-53241436 Msa0817810:CDS 55.0%
GCCATCAACAGTATTCCCGC+TGG + chr5_3:53241457-53241476 Msa0817810:CDS 55.0%
CCCGCTGGAGAAATTGATGG+AGG + chr5_3:53241472-53241491 Msa0817810:CDS 55.0%
TCCAGCTTGCCAAGTCTGCT+TGG + chr5_3:53242262-53242281 Msa0817810:intron 55.0%
CCAGCTTGCCAAGTCTGCTT+GGG + chr5_3:53242263-53242282 Msa0817810:intron 55.0%
CTTGGGCTCGTGCCAAAATC+TGG + chr5_3:53242280-53242299 Msa0817810:intron 55.0%
GCTCGTGCCAAAATCTGGTC+TGG + chr5_3:53242285-53242304 Msa0817810:intron 55.0%
! CTGGTCTGGCTTCTCCTGAA+TGG + chr5_3:53242299-53242318 Msa0817810:intron 55.0%
GTGGCCACATGCATACACTC+TGG + chr5_3:53243219-53243238 Msa0817810:three_prime_UTR 55.0%
AGTGGGAGAGAGGAACGACG+CGG - chr5_3:53234983-53235002 None:intergenic 60.0%
ACCTGGCAGAGGTGATCCAC+TGG - chr5_3:53239288-53239307 None:intergenic 60.0%
CTTGGAACGACAACGGCCAC+TGG - chr5_3:53239851-53239870 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG - chr5_3:53239998-53240017 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG + chr5_3:53241065-53241084 Msa0817810:CDS 60.0%
GCCCAAGCCCAGATCACAAG+AGG - chr5_3:53241421-53241440 None:intergenic 60.0%
CTTGTGATCTGGGCTTGGGC+AGG + chr5_3:53241421-53241440 Msa0817810:CDS 60.0%
GTGATGCAGCCGCCCTAACA+AGG + chr5_3:53241781-53241800 Msa0817810:intron 60.0%
GGCAGAAGCCGAGAGCTGTT+TGG - chr5_3:53242170-53242189 None:intergenic 60.0%
CCCAAGCAGACTTGGCAAGC+TGG - chr5_3:53242266-53242285 None:intergenic 60.0%
GCCAGTGGATCACCTCTGCC+AGG + chr5_3:53239284-53239303 Msa0817810:CDS 65.0%
GGCACGAGCCCAAGCAGACT+TGG - chr5_3:53242274-53242293 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53234783 53243492 53234783 ID=Msa0817810;Name=Msa0817810
chr5_3 mRNA 53234783 53243492 53234783 ID=Msa0817810-mRNA-1;Parent=Msa0817810;Name=Msa0817810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=165|0.88|1|1|1|1|10|279|491
chr5_3 exon 53234783 53235157 53234783 ID=Msa0817810-mRNA-1:exon:16024;Parent=Msa0817810-mRNA-1
chr5_3 exon 53236825 53236956 53236825 ID=Msa0817810-mRNA-1:exon:16025;Parent=Msa0817810-mRNA-1
chr5_3 exon 53239263 53239313 53239263 ID=Msa0817810-mRNA-1:exon:16026;Parent=Msa0817810-mRNA-1
chr5_3 exon 53239423 53239533 53239423 ID=Msa0817810-mRNA-1:exon:16027;Parent=Msa0817810-mRNA-1
chr5_3 exon 53239791 53239896 53239791 ID=Msa0817810-mRNA-1:exon:16028;Parent=Msa0817810-mRNA-1
chr5_3 exon 53239990 53240083 53239990 ID=Msa0817810-mRNA-1:exon:16029;Parent=Msa0817810-mRNA-1
chr5_3 exon 53240459 53240612 53240459 ID=Msa0817810-mRNA-1:exon:16030;Parent=Msa0817810-mRNA-1
chr5_3 exon 53240996 53241203 53240996 ID=Msa0817810-mRNA-1:exon:16031;Parent=Msa0817810-mRNA-1
chr5_3 exon 53241365 53241525 53241365 ID=Msa0817810-mRNA-1:exon:16032;Parent=Msa0817810-mRNA-1
chr5_3 exon 53242965 53243492 53242965 ID=Msa0817810-mRNA-1:exon:16033;Parent=Msa0817810-mRNA-1
chr5_3 five_prime_UTR 53234783 53234947 53234783 ID=Msa0817810-mRNA-1:five_prime_utr;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53234948 53235157 53234948 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53236825 53236956 53236825 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53239263 53239313 53239263 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53239423 53239533 53239423 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53239791 53239896 53239791 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53239990 53240083 53239990 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53240459 53240612 53240459 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53240996 53241203 53240996 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53241365 53241525 53241365 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 CDS 53242965 53243213 53242965 ID=Msa0817810-mRNA-1:cds;Parent=Msa0817810-mRNA-1
chr5_3 three_prime_UTR 53243214 53243492 53243214 ID=Msa0817810-mRNA-1:three_prime_utr;Parent=Msa0817810-mRNA-1
Gene Sequence

>Msa0817810

ATGAATCTCTCACTACCTTCACCTTCAACTTTCCGCGTCGTTCCTCTCTCCCACTGCACTTCTTGCTTTCAATTCAATCTTCGTTTTCATCCTTCTAATCGTTTTCGTAATTCGCGTTCGAGTTCGTTGAAGTTGAATCCTCCTACAGGAAGAAGAAGAAGAAGACGGATTGCTTGTAGTGTTAATGAGTCTGATGGTGATAAAGACGAGGAGAAAGAAGCACATAAAAATGGAGAAACACAATCTTTGGAGGATACCTCTGAGCAAAGTAACCCTCCACCTGTAGATGCAGAACAGCTAAACAAGTTTACTGATGAAAATACAAATCAAAATGATGTGCAGAATACGGATAACATAGAAGTTGCCAGTGGATCACCTCTGCCAGGTGTGAAGCCTCAACAACTGGATGATGTAATAAAAATTCCCAAGGAAAAAATCGAAATCCTTAAAAATCAAGTGTTTGGCTTTGATACTTTTTTTGTAACAAGCCAAGATCCTTACGAGGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTAGTCAATCCTGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGAATTTGTTAAAGGATGGCCTACCTGGAGCCCTTGTTACTGCACTTATTATCGGGGTACATGAACTTGGTCACTTTCTAGTTGCCCAAAACCTTGGAGTTAAGCTTGGAGTCCCGTACTTTGTTCCTAGCTGGCAGATAGGCTCTTTTGGTTCAATTACAAGGATAAGAAGCATAGTATCTAATCGTGAAGATTTGCTCAAGATTGCAGCTGCTGGACCAATTGCCGGATTTGCATTGGGTCTTGTTCTTCTGCTTCTAGGTTTTGTTATACCTCCAAGTGACGGTATTGGTGTTGTTGTTGATGCTTCTGTGTTTCACGAGTCATTTCTAGCTGGCGGCATTGCAAGATTGTTTCTTGGTAACGTTCTCAAGGAAGGAACTCCAATTTCTATCAACCCTCTTGTGATCTGGGCTTGGGCAGGACTCCTCATCAATGCCATCAACAGTATTCCCGCTGGAGAAATTGATGGAGGGAGAATTTCTTTTGCCATATGGGGAAGAAAGGCTTCAATTCGCTTCACAGGATTTTCGATTGTGTTGCTTGGACTGTCATCACTGCTTAATGATGTAGCTTTCTACTGGGTAGTTCTGATATTCTTCTTGCAAAGAGGTCCAATTTCTCCTCTATCAGATGAAATAACTGAACCTGATGACAAGTATGTTGCTCTCGGAATAACAGTTTTGCTCTTAGGCTTGTTAGTATGCTTGCCATACCCTTTCCCATTTATAGATGAAACCCTTGCAAGTTTCTAG

Protein sequence

>Msa0817810

MNLSLPSPSTFRVVPLSHCTSCFQFNLRFHPSNRFRNSRSSSLKLNPPTGRRRRRRIACSVNESDGDKDEEKEAHKNGETQSLEDTSEQSNPPPVDAEQLNKFTDENTNQNDVQNTDNIEVASGSPLPGVKPQQLDDVIKIPKEKIEILKNQVFGFDTFFVTSQDPYEDKFGDEYRLFLLVNPEDDKPVAVVVPRTTLQPETTPVPEWFGAASFGIVTVFTLLLRNVPNLQSDLLSTVDNLNLLKDGLPGALVTALIIGVHELGHFLVAQNLGVKLGVPYFVPSWQIGSFGSITRIRSIVSNREDLLKIAAAGPIAGFALGLVLLLLGFVIPPSDGIGVVVDASVFHESFLAGGIARLFLGNVLKEGTPISINPLVIWAWAGLLINAINSIPAGEIDGGRISFAIWGRKASIRFTGFSIVLLGLSSLLNDVAFYWVVLIFFLQRGPISPLSDEITEPDDKYVALGITVLLLGLLVCLPYPFPFIDETLASF*