AlfalfaGEDB | Msa0350910

M. sativa cultivar zhongmu-4 / Msa0350910

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350910	XP_003598901.1	95.489	133	6	0	1	133	1	133	5.78e-72	221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350910	G7J1N8	95.489	133	6	0	1	133	1	133	2.76e-72	221

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0350910	0.825838	3.768479e-54	-8.615850e-47
Msa0003470	Msa0350910	0.818717	1.694100e-52	-8.615850e-47
Msa0004350	Msa0350910	0.815442	9.224634e-52	-8.615850e-47
Msa0008850	Msa0350910	0.835839	1.328186e-56	-8.615850e-47
Msa0012460	Msa0350910	0.800659	1.299329e-48	-8.615850e-47
Msa0012780	Msa0350910	-0.802186	6.322732e-49	-8.615850e-47
Msa0017120	Msa0350910	0.834563	2.787687e-56	-8.615850e-47
Msa0017940	Msa0350910	0.802984	4.328415e-49	-8.615850e-47
Msa0020630	Msa0350910	0.818416	1.982529e-52	-8.615850e-47
Msa0027540	Msa0350910	0.845599	3.672752e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350910	MtrunA17_Chr3g0085861	95.489	133	6	0	1	133	1	133	5.32e-76	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350910	AT4G31560.1	47.586	145	54	7	1	132	1	136	9.74e-27	97.4

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Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAGCTTAAATTTG+AGG	0.419496	3_1:+16329263	Msa0350910:exon
AAATGCTAGCAGATAACCAA+TGG	0.578436	3_1:-16329370	None:intergenic
AAGGTGGGGCCCGCAAGGAA+GGG	0.516105	3_1:-16327155	None:intergenic
AAGTGGAAATAACGTCGCCA+TGG	0.611868	3_1:-16327103	None:intergenic
AATGTGAAGGAATGAGAAAT+TGG	0.412756	3_1:-16327132	None:intergenic
AATTAAATTCTTAAATGAAA+AGG	0.427139	3_1:+16329517	Msa0350910:three_prime_UTR
AATTGACGAAGAGGAAGAAG+AGG	0.548103	3_1:+16329163	Msa0350910:CDS
AGAGGCGGAGAGTTGCGTGA+AGG	0.613491	3_1:-16327174	None:intergenic
AGCACGTGTGACCACCGTCG+CGG	0.691929	3_1:-16327226	None:intergenic
ATTACACTGTAATCCATCCA+TGG	0.615008	3_1:+16327086	Msa0350910:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGAAGGAATGAGAAAT+TGG	-	chr3_1:16327135-16327154	None:intergenic	30.0%
TTACCTCTTCATAGAAATCT+TGG	-	chr3_1:16327350-16327369	None:intergenic	30.0%
GTTTGATGAAATTCCTCAAA+TGG	+	chr3_1:16327481-16327500	Msa0350910:intron	30.0%
TGGTTGAGCTTATGAATTAA+AGG	+	chr3_1:16327579-16327598	Msa0350910:intron	30.0%
GTTGAATGAAAAGTGGTTTA+TGG	+	chr3_1:16327865-16327884	Msa0350910:intron	30.0%
TTTGCCTCCAAAATCTAAAA+TGG	-	chr3_1:16327988-16328007	None:intergenic	30.0%
AAGATACAGTGATGTATGTT+TGG	+	chr3_1:16328118-16328137	Msa0350910:intron	30.0%
TAACAAGTGTTAACAGACAT+AGG	-	chr3_1:16328439-16328458	None:intergenic	30.0%
GACAAACGATAAATCTATCT+AGG	+	chr3_1:16328463-16328482	Msa0350910:intron	30.0%
ATCAACGTTAATTGAGTGTA+AGG	-	chr3_1:16328568-16328587	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	16327020	16329560	16327020	ID=Msa0350910;Name=Msa0350910
chr3_1	mRNA	16327020	16329560	16327020	ID=Msa0350910-mRNA-1;Parent=Msa0350910;Name=Msa0350910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85\|1\|1\|1\|0.5\|0.33\|3\|238\|133
chr3_1	exon	16327020	16327365	16327020	ID=Msa0350910-mRNA-1:exon:3961;Parent=Msa0350910-mRNA-1
chr3_1	exon	16329137	16329284	16329137	ID=Msa0350910-mRNA-1:exon:3962;Parent=Msa0350910-mRNA-1
chr3_1	exon	16329330	16329560	16329330	ID=Msa0350910-mRNA-1:exon:3963;Parent=Msa0350910-mRNA-1
chr3_1	five_prime_UTR	16327020	16327104	16327020	ID=Msa0350910-mRNA-1:five_prime_utr;Parent=Msa0350910-mRNA-1
chr3_1	CDS	16327105	16327365	16327105	ID=Msa0350910-mRNA-1:cds;Parent=Msa0350910-mRNA-1
chr3_1	CDS	16329137	16329277	16329137	ID=Msa0350910-mRNA-1:cds;Parent=Msa0350910-mRNA-1
chr3_1	three_prime_UTR	16329278	16329284	16329278	ID=Msa0350910-mRNA-1:three_prime_utr;Parent=Msa0350910-mRNA-1
chr3_1	three_prime_UTR	16329330	16329560	16329330	ID=Msa0350910-mRNA-1:three_prime_utr;Parent=Msa0350910-mRNA-1

Gene Sequence

>Msa0350910

ATGGCGACGTTATTTCCACTTTCTAATCCAATTTCTCATTCCTTCACATTCCCTTCCTTGCGGGCCCCACCTTCACGCAACTCTCCGCCTCTTCTCCTCACCGGCTGCCGGAGACCGAGAACCGCGACGGTGGTCACACGTGCTGGCGCAAGTACAAGTAGCTATGCTTTTGCGATTGCTCTTCCTCTTTCTCTCCTCGCTGTAACTGTTTTCACTGCTCTTCGGATAGGTGAGAAGCTTGACCAAGATTTCTATGAAGAGATGGCGAAGAACGAAGCTATCATGGAAATTGACGAAGAGGAAGAAGAGGATAATGATGATGATGATGTGGAAACTTATTCACAAGAAGAACAAGAACCGGTCCTTCCACGTGGCCGCAACAGGCCTAAAAGGGAAGCTTAA

Protein sequence

>Msa0350910

MATLFPLSNPISHSFTFPSLRAPPSRNSPPLLLTGCRRPRTATVVTRAGASTSSYAFAIALPLSLLAVTVFTALRIGEKLDQDFYEEMAKNEAIMEIDEEEEEDNDDDDVETYSQEEQEPVLPRGRNRPKREA*