AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0350910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350910 MtrunA17_Chr3g0085861 95.489 133 6 0 1 133 1 133 5.32e-76 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350910 AT4G31560.1 47.586 145 54 7 1 132 1 136 9.74e-27 97.4

Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCCGCAACAGGCCTAAA+AGG 0.219871 3_1:+16329246 Msa0350910:CDS
CTTCACATTCCCTTCCTTGC+GGG 0.249184 3_1:+16327146 Msa0350910:CDS
TCCTTCCACGTGGCCGCAAC+AGG 0.325588 3_1:+16329237 Msa0350910:CDS
GTGACCACCGTCGCGGTTCT+CGG 0.360693 3_1:-16327219 None:intergenic
TTACCTCTTCATAGAAATCT+TGG 0.361085 3_1:-16327347 None:intergenic
TATAAAGGGTTTATAATGTA+AGG 0.367183 3_1:+16329439 Msa0350910:three_prime_UTR
TCTGATATGTAAGCTTATAA+AGG 0.377323 3_1:+16329424 Msa0350910:three_prime_UTR
CTGATATGTAAGCTTATAAA+GGG 0.391777 3_1:+16329425 Msa0350910:three_prime_UTR
CTCTTCTCCTCACCGGCTGC+CGG 0.412074 3_1:+16327193 Msa0350910:CDS
AATGTGAAGGAATGAGAAAT+TGG 0.412756 3_1:-16327132 None:intergenic
AAAAGGGAAGCTTAAATTTG+AGG 0.419496 3_1:+16329263 Msa0350910:exon
AATTAAATTCTTAAATGAAA+AGG 0.427139 3_1:+16329517 Msa0350910:three_prime_UTR
GAAGGTGGGGCCCGCAAGGA+AGG 0.432992 3_1:-16327156 None:intergenic
TAGGGGAGGTGTTTATCTAT+AGG 0.456479 3_1:+16329322 Msa0350910:intron
TCTCTTAGTTCATGTTCCAT+TGG 0.463587 3_1:+16329354 Msa0350910:three_prime_UTR
GCCTGTTGCGGCCACGTGGA+AGG 0.472208 3_1:-16329238 None:intergenic
CCGTCGCGGTTCTCGGTCTC+CGG 0.473735 3_1:-16327212 None:intergenic
GGCGAAGAACGAAGCTATCA+TGG 0.476969 3_1:+16329139 Msa0350910:CDS
TTCACAAGAAGAACAAGAAC+CGG 0.477138 3_1:+16329214 Msa0350910:CDS
TGAGAAATTGGATTAGAAAG+TGG 0.481568 3_1:-16327120 None:intergenic
GCGACGGTGGTCACACGTGC+TGG 0.481713 3_1:+16327228 Msa0350910:CDS
GGAAATAACGTCGCCATGGA+TGG 0.482119 3_1:-16327099 None:intergenic
GGTTCTCGGTCTCCGGCAGC+CGG 0.492759 3_1:-16327205 None:intergenic
TTGCGGCCACGTGGAAGGAC+CGG 0.505790 3_1:-16329233 None:intergenic
TGGCCGCAACAGGCCTAAAA+GGG 0.513982 3_1:+16329247 Msa0350910:CDS
AAGGTGGGGCCCGCAAGGAA+GGG 0.516105 3_1:-16327155 None:intergenic
GGCGGAGAGTTGCGTGAAGG+TGG 0.517310 3_1:-16327171 None:intergenic
GTTACAGCGAGGAGAGAAAG+AGG 0.517475 3_1:-16327288 None:intergenic
CGGCAGCCGGTGAGGAGAAG+AGG 0.525624 3_1:-16327192 None:intergenic
TGACCAAGATTTCTATGAAG+AGG 0.531554 3_1:+16327344 Msa0350910:CDS
CCTTCACATTCCCTTCCTTG+CGG 0.535091 3_1:+16327145 Msa0350910:CDS
AATTGACGAAGAGGAAGAAG+AGG 0.548103 3_1:+16329163 Msa0350910:CDS
TCGGTCTCCGGCAGCCGGTG+AGG 0.549955 3_1:-16327200 None:intergenic
GCGGAGAGTTGCGTGAAGGT+GGG 0.550581 3_1:-16327170 None:intergenic
GCGTGAAGGTGGGGCCCGCA+AGG 0.554379 3_1:-16327160 None:intergenic
CAGCCGGTGAGGAGAAGAGG+CGG 0.566616 3_1:-16327189 None:intergenic
CGGAGAGTTGCGTGAAGGTG+GGG 0.577510 3_1:-16327169 None:intergenic
AAATGCTAGCAGATAACCAA+TGG 0.578436 3_1:-16329370 None:intergenic
TATCATGGAAATTGACGAAG+AGG 0.608853 3_1:+16329154 Msa0350910:CDS
TCTCCGCCTCTTCTCCTCAC+CGG 0.610510 3_1:+16327186 Msa0350910:CDS
AAGTGGAAATAACGTCGCCA+TGG 0.611868 3_1:-16327103 None:intergenic
AGAGGCGGAGAGTTGCGTGA+AGG 0.613491 3_1:-16327174 None:intergenic
ATTACACTGTAATCCATCCA+TGG 0.615008 3_1:+16327086 Msa0350910:exon
TTAGGCCTGTTGCGGCCACG+TGG 0.641712 3_1:-16329242 None:intergenic
GAGACCGAGAACCGCGACGG+TGG 0.655284 3_1:+16327215 Msa0350910:CDS
TGTAATCTATTCGTGTAGTG+TGG 0.656296 3_1:-16327069 None:intergenic
CCGGAGACCGAGAACCGCGA+CGG 0.661053 3_1:+16327212 Msa0350910:CDS
CCGCAAGGAAGGGAATGTGA+AGG 0.673491 3_1:-16327145 None:intergenic
AGCACGTGTGACCACCGTCG+CGG 0.691929 3_1:-16327226 None:intergenic
CAAGAACCGGTCCTTCCACG+TGG 0.698218 3_1:+16329227 Msa0350910:CDS
CAGTGAAAACAGTTACAGCG+AGG 0.729313 3_1:-16327299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTAAGAATTTAAT+TGG - chr3_1:16329518-16329537 None:intergenic 10.0%
!! AATTAAATTCTTAAATGAAA+AGG + chr3_1:16329517-16329536 Msa0350910:three_prime_UTR 10.0%
!! AAAACAAAACAATGTAAATT+CGG - chr3_1:16327747-16327766 None:intergenic 15.0%
!!! CATCTTTAAAAATAAATCTT+TGG + chr3_1:16328718-16328737 Msa0350910:intron 15.0%
!! AGTATATTAAATATTCATTG+AGG - chr3_1:16328876-16328895 None:intergenic 15.0%
!!! TAGTAATTTTTTATCTACAT+TGG - chr3_1:16329479-16329498 None:intergenic 15.0%
!! TTATGTTAGTATTTGAATTC+TGG - chr3_1:16327623-16327642 None:intergenic 20.0%
!!! CTCAAAATTATTTTTTGTCA+CGG - chr3_1:16327771-16327790 None:intergenic 20.0%
!!! AAAATCAATTTTTATCATCG+CGG - chr3_1:16327804-16327823 None:intergenic 20.0%
!! AATAAATTGTTTCGTGAATT+TGG + chr3_1:16327825-16327844 Msa0350910:intron 20.0%
!!! TTAGAATCCATTTTAGATTT+TGG + chr3_1:16327978-16327997 Msa0350910:intron 20.0%
!!! TACACATTTAGAATCAATTA+TGG + chr3_1:16328053-16328072 Msa0350910:intron 20.0%
!!! ACACATTTAGAATCAATTAT+GGG + chr3_1:16328054-16328073 Msa0350910:intron 20.0%
!!! AACTTCAAGTTTATCAATTA+TGG + chr3_1:16328222-16328241 Msa0350910:intron 20.0%
!!! AAATTGATTTTGAGATGTTT+GGG - chr3_1:16328275-16328294 None:intergenic 20.0%
!!! AAAATTGATTTTGAGATGTT+TGG - chr3_1:16328276-16328295 None:intergenic 20.0%
!! GAAATCTAAATTACAGTAAT+TGG - chr3_1:16328365-16328384 None:intergenic 20.0%
!! TCATGTTAGAAATTTCTTTA+TGG - chr3_1:16328613-16328632 None:intergenic 20.0%
!!! TGAAAATTTCTCTTATGTTT+TGG + chr3_1:16328795-16328814 Msa0350910:intron 20.0%
!!! GAAAATTTCTCTTATGTTTT+GGG + chr3_1:16328796-16328815 Msa0350910:intron 20.0%
!!! ACTTTTTTGGAAATATTTGT+CGG + chr3_1:16329066-16329085 Msa0350910:intron 20.0%
!!! ATGTTTTTTTTAATACCAGA+TGG + chr3_1:16329118-16329137 Msa0350910:intron 20.0%
!! TATAAAGGGTTTATAATGTA+AGG + chr3_1:16329439-16329458 Msa0350910:three_prime_UTR 20.0%
!! CAACTTTACAAAGCAAATTT+TGG - chr3_1:16327382-16327401 None:intergenic 25.0%
! TTTGATGAAATTCCTCAAAT+GGG + chr3_1:16327482-16327501 Msa0350910:intron 25.0%
! TAGTTTAGTTGAATGAAAAG+TGG + chr3_1:16327858-16327877 Msa0350910:intron 25.0%
! TGGAATGTGTTTAACATATA+AGG + chr3_1:16328514-16328533 Msa0350910:intron 25.0%
! ACATATAAGGTCAGAAATAT+AGG + chr3_1:16328527-16328546 Msa0350910:intron 25.0%
! ACAATCTGGAAAATTTCTTA+AGG - chr3_1:16328665-16328684 None:intergenic 25.0%
! TATTAGTGAGTTAACTGTTT+CGG - chr3_1:16328919-16328938 None:intergenic 25.0%
! TTATAATTACCAGCTCAATA+AGG + chr3_1:16328974-16328993 Msa0350910:intron 25.0%
! AATTAGAAATTTGTGAACAG+AGG - chr3_1:16329019-16329038 None:intergenic 25.0%
! CAAATATTTCCAAAAAAGTG+TGG - chr3_1:16329065-16329084 None:intergenic 25.0%
! AAAAACATGTCACAAAAACA+GGG - chr3_1:16329106-16329125 None:intergenic 25.0%
! AAAAAACATGTCACAAAAAC+AGG - chr3_1:16329107-16329126 None:intergenic 25.0%
! AGTAAACTTGCAAATGAATA+GGG + chr3_1:16329294-16329313 Msa0350910:intron 25.0%
! TCTGATATGTAAGCTTATAA+AGG + chr3_1:16329424-16329443 Msa0350910:three_prime_UTR 25.0%
! CTGATATGTAAGCTTATAAA+GGG + chr3_1:16329425-16329444 Msa0350910:three_prime_UTR 25.0%
! TGAGAAATTGGATTAGAAAG+TGG - chr3_1:16327123-16327142 None:intergenic 30.0%
AATGTGAAGGAATGAGAAAT+TGG - chr3_1:16327135-16327154 None:intergenic 30.0%
TTACCTCTTCATAGAAATCT+TGG - chr3_1:16327350-16327369 None:intergenic 30.0%
GTTTGATGAAATTCCTCAAA+TGG + chr3_1:16327481-16327500 Msa0350910:intron 30.0%
TGGTTGAGCTTATGAATTAA+AGG + chr3_1:16327579-16327598 Msa0350910:intron 30.0%
GTTGAATGAAAAGTGGTTTA+TGG + chr3_1:16327865-16327884 Msa0350910:intron 30.0%
! ATGGATTCTAAGTTGAAGAT+AGG - chr3_1:16327969-16327988 None:intergenic 30.0%
! GAATCCATTTTAGATTTTGG+AGG + chr3_1:16327981-16328000 Msa0350910:intron 30.0%
TTTGCCTCCAAAATCTAAAA+TGG - chr3_1:16327988-16328007 None:intergenic 30.0%
AAGATACAGTGATGTATGTT+TGG + chr3_1:16328118-16328137 Msa0350910:intron 30.0%
! AGATTTGAAGTTTGCGAATA+AGG + chr3_1:16328303-16328322 Msa0350910:intron 30.0%
TAACAAGTGTTAACAGACAT+AGG - chr3_1:16328439-16328458 None:intergenic 30.0%
GACAAACGATAAATCTATCT+AGG + chr3_1:16328463-16328482 Msa0350910:intron 30.0%
ATCAACGTTAATTGAGTGTA+AGG - chr3_1:16328568-16328587 None:intergenic 30.0%
TATAACATGTCTCTACAATC+TGG - chr3_1:16328679-16328698 None:intergenic 30.0%
TTTCATCATAACTTGAGAGA+TGG + chr3_1:16328771-16328790 Msa0350910:intron 30.0%
ACAGTTAACTCACTAATATC+TGG + chr3_1:16328921-16328940 Msa0350910:intron 30.0%
ATAGATATTCCTTATTGAGC+TGG - chr3_1:16328986-16329005 None:intergenic 30.0%
!!! GATTCTTAACCACACTTTTT+TGG + chr3_1:16329053-16329072 Msa0350910:intron 30.0%
! CAAATTTAAGCTTCCCTTTT+AGG - chr3_1:16329263-16329282 None:intergenic 30.0%
AAAAGGGAAGCTTAAATTTG+AGG + chr3_1:16329263-16329282 Msa0350910:exon 30.0%
CAGTAAACTTGCAAATGAAT+AGG + chr3_1:16329293-16329312 Msa0350910:intron 30.0%
TGTAATCTATTCGTGTAGTG+TGG - chr3_1:16327072-16327091 None:intergenic 35.0%
ATTACACTGTAATCCATCCA+TGG + chr3_1:16327086-16327105 Msa0350910:exon 35.0%
! TAACTGTTTTCACTGCTCTT+CGG + chr3_1:16327307-16327326 Msa0350910:CDS 35.0%
TGACCAAGATTTCTATGAAG+AGG + chr3_1:16327344-16327363 Msa0350910:CDS 35.0%
GAGGAATTTCATCAAACACA+TGG - chr3_1:16327478-16327497 None:intergenic 35.0%
CTTATGAATTAAAGGAGCGA+AGG + chr3_1:16327587-16327606 Msa0350910:intron 35.0%
AAAAAAGTAGTGTTGCCATC+TGG + chr3_1:16327671-16327690 Msa0350910:intron 35.0%
ACCATATTCATTCAACCAGA+TGG - chr3_1:16327689-16327708 None:intergenic 35.0%
AATTATGGGTGATCCAAATG+TGG + chr3_1:16328068-16328087 Msa0350910:intron 35.0%
! ACTTACTATTAGCCTGTGTT+TGG - chr3_1:16328096-16328115 None:intergenic 35.0%
!!! TTGATTTTGAGATGTTTGGG+TGG - chr3_1:16328272-16328291 None:intergenic 35.0%
TATCATGGAAATTGACGAAG+AGG + chr3_1:16329154-16329173 Msa0350910:CDS 35.0%
! GGATAATGATGATGATGATG+TGG + chr3_1:16329184-16329203 Msa0350910:CDS 35.0%
TTCACAAGAAGAACAAGAAC+CGG + chr3_1:16329214-16329233 Msa0350910:CDS 35.0%
AAACTTGCAAATGAATAGGG+AGG + chr3_1:16329297-16329316 Msa0350910:intron 35.0%
CAAATGAATAGGGAGGAATA+GGG + chr3_1:16329304-16329323 Msa0350910:intron 35.0%
AAATGAATAGGGAGGAATAG+GGG + chr3_1:16329305-16329324 Msa0350910:intron 35.0%
TCTCTTAGTTCATGTTCCAT+TGG + chr3_1:16329354-16329373 Msa0350910:three_prime_UTR 35.0%
AAATGCTAGCAGATAACCAA+TGG - chr3_1:16329373-16329392 None:intergenic 35.0%
AATTGCGCAAAACCCATTTG+AGG - chr3_1:16327497-16327516 None:intergenic 40.0%
ATACAAGTAGTGTTGCCATC+TGG + chr3_1:16327537-16327556 Msa0350910:intron 40.0%
TACAAGTAGTGTTGCCATCT+GGG + chr3_1:16327538-16327557 Msa0350910:intron 40.0%
TAAAGGAGCGAAGGAGTTAA+AGG + chr3_1:16327596-16327615 Msa0350910:intron 40.0%
GCCATCTGGTTGAATGAATA+TGG + chr3_1:16327685-16327704 Msa0350910:intron 40.0%
GGATGCATTCATGCATGTAA+AGG + chr3_1:16328139-16328158 Msa0350910:intron 40.0%
TTCATGCATGTAAAGGTGAG+TGG + chr3_1:16328146-16328165 Msa0350910:intron 40.0%
TCCACTAAGCAACTCTACAA+CGG - chr3_1:16328332-16328351 None:intergenic 40.0%
CCAAAATAAGCCTTCTGAGT+CGG + chr3_1:16328391-16328410 Msa0350910:intron 40.0%
TCACATAGCTAAAGTTGCAC+AGG - chr3_1:16328636-16328655 None:intergenic 40.0%
AATTGACGAAGAGGAAGAAG+AGG + chr3_1:16329163-16329182 Msa0350910:CDS 40.0%
GCAAATGAATAGGGAGGAAT+AGG + chr3_1:16329303-16329322 Msa0350910:intron 40.0%
!! TAGGGGAGGTGTTTATCTAT+AGG + chr3_1:16329322-16329341 Msa0350910:intron 40.0%
AAGTGGAAATAACGTCGCCA+TGG - chr3_1:16327106-16327125 None:intergenic 45.0%
CAGTGAAAACAGTTACAGCG+AGG - chr3_1:16327302-16327321 None:intergenic 45.0%
! GTTTTCACTGCTCTTCGGAT+AGG + chr3_1:16327312-16327331 Msa0350910:CDS 45.0%
ACAAGTAGTGTTGCCATCTG+GGG + chr3_1:16327539-16327558 Msa0350910:intron 45.0%
! CCTGTGTTTGGTTCCACATT+TGG - chr3_1:16328084-16328103 None:intergenic 45.0%
CCAAATGTGGAACCAAACAC+AGG + chr3_1:16328081-16328100 Msa0350910:intron 45.0%
TCCGTTGTAGAGTTGCTTAG+TGG + chr3_1:16328328-16328347 Msa0350910:intron 45.0%
! CCGACTCAGAAGGCTTATTT+TGG - chr3_1:16328394-16328413 None:intergenic 45.0%
ACATTCCAAGTCATGCAGCA+TGG - chr3_1:16328502-16328521 None:intergenic 45.0%
! CAGACGTGTGCATGGATTAA+AGG - chr3_1:16328845-16328864 None:intergenic 45.0%
TAACTGATCAGACGTGTGCA+TGG - chr3_1:16328853-16328872 None:intergenic 45.0%
GGAAATAACGTCGCCATGGA+TGG - chr3_1:16327102-16327121 None:intergenic 50.0%
CCTTCACATTCCCTTCCTTG+CGG + chr3_1:16327145-16327164 Msa0350910:CDS 50.0%
CTTCACATTCCCTTCCTTGC+GGG + chr3_1:16327146-16327165 Msa0350910:CDS 50.0%
GTTACAGCGAGGAGAGAAAG+AGG - chr3_1:16327291-16327310 None:intergenic 50.0%
CAAGTAGTGTTGCCATCTGG+GGG + chr3_1:16327540-16327559 Msa0350910:intron 50.0%
! GGAAGATCAACCGACTCAGA+AGG - chr3_1:16328404-16328423 None:intergenic 50.0%
GAGTCGGTTGATCTTCCCTT+TGG + chr3_1:16328407-16328426 Msa0350910:intron 50.0%
AGACATAGGCGCATGCCAAA+GGG - chr3_1:16328425-16328444 None:intergenic 50.0%
AAGTGCCATGCTGCATGACT+TGG + chr3_1:16328494-16328513 Msa0350910:intron 50.0%
TAGCTTCGTTCTTCGCCATC+TGG - chr3_1:16329136-16329155 None:intergenic 50.0%
GGCGAAGAACGAAGCTATCA+TGG + chr3_1:16329139-16329158 Msa0350910:CDS 50.0%
! CTTCCCTTTTAGGCCTGTTG+CGG - chr3_1:16329253-16329272 None:intergenic 50.0%
TGAATAGGGAGGAATAGGGG+AGG + chr3_1:16329308-16329327 Msa0350910:intron 50.0%
CCGCAAGGAAGGGAATGTGA+AGG - chr3_1:16327148-16327167 None:intergenic 55.0%
TGTTGCCATCTGGGGGAGTT+GGG + chr3_1:16327547-16327566 Msa0350910:intron 55.0%
GGGGAGTTGGGTAGCTCATT+TGG + chr3_1:16327559-16327578 Msa0350910:intron 55.0%
CAGACATAGGCGCATGCCAA+AGG - chr3_1:16328426-16328445 None:intergenic 55.0%
TGGCCGCAACAGGCCTAAAA+GGG + chr3_1:16329247-16329266 Msa0350910:CDS 55.0%
CGGAGAGTTGCGTGAAGGTG+GGG - chr3_1:16327172-16327191 None:intergenic 60.0%
GCGGAGAGTTGCGTGAAGGT+GGG - chr3_1:16327173-16327192 None:intergenic 60.0%
AGAGGCGGAGAGTTGCGTGA+AGG - chr3_1:16327177-16327196 None:intergenic 60.0%
TCTCCGCCTCTTCTCCTCAC+CGG + chr3_1:16327186-16327205 Msa0350910:CDS 60.0%
GTGTTGCCATCTGGGGGAGT+TGG + chr3_1:16327546-16327565 Msa0350910:intron 60.0%
AGCTACCCAACTCCCCCAGA+TGG - chr3_1:16327555-16327574 None:intergenic 60.0%
CAAGAACCGGTCCTTCCACG+TGG + chr3_1:16329227-16329246 Msa0350910:CDS 60.0%
GTGGCCGCAACAGGCCTAAA+AGG + chr3_1:16329246-16329265 Msa0350910:CDS 60.0%
AAGGTGGGGCCCGCAAGGAA+GGG - chr3_1:16327158-16327177 None:intergenic 65.0%
GGCGGAGAGTTGCGTGAAGG+TGG - chr3_1:16327174-16327193 None:intergenic 65.0%
CAGCCGGTGAGGAGAAGAGG+CGG - chr3_1:16327192-16327211 None:intergenic 65.0%
! CTCTTCTCCTCACCGGCTGC+CGG + chr3_1:16327193-16327212 Msa0350910:CDS 65.0%
GTGACCACCGTCGCGGTTCT+CGG - chr3_1:16327222-16327241 None:intergenic 65.0%
AGCACGTGTGACCACCGTCG+CGG - chr3_1:16327229-16327248 None:intergenic 65.0%
TTGCGGCCACGTGGAAGGAC+CGG - chr3_1:16329236-16329255 None:intergenic 65.0%
TCCTTCCACGTGGCCGCAAC+AGG + chr3_1:16329237-16329256 Msa0350910:CDS 65.0%
TTAGGCCTGTTGCGGCCACG+TGG - chr3_1:16329245-16329264 None:intergenic 65.0%
GAAGGTGGGGCCCGCAAGGA+AGG - chr3_1:16327159-16327178 None:intergenic 70.0%
CGGCAGCCGGTGAGGAGAAG+AGG - chr3_1:16327195-16327214 None:intergenic 70.0%
GGTTCTCGGTCTCCGGCAGC+CGG - chr3_1:16327208-16327227 None:intergenic 70.0%
CCGTCGCGGTTCTCGGTCTC+CGG - chr3_1:16327215-16327234 None:intergenic 70.0%
CCGGAGACCGAGAACCGCGA+CGG + chr3_1:16327212-16327231 Msa0350910:CDS 70.0%
GAGACCGAGAACCGCGACGG+TGG + chr3_1:16327215-16327234 Msa0350910:CDS 70.0%
GCGACGGTGGTCACACGTGC+TGG + chr3_1:16327228-16327247 Msa0350910:CDS 70.0%
GCCTGTTGCGGCCACGTGGA+AGG - chr3_1:16329241-16329260 None:intergenic 70.0%
GCGTGAAGGTGGGGCCCGCA+AGG - chr3_1:16327163-16327182 None:intergenic 75.0%
TCGGTCTCCGGCAGCCGGTG+AGG - chr3_1:16327203-16327222 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 16327020 16329560 16327020 ID=Msa0350910;Name=Msa0350910
chr3_1 mRNA 16327020 16329560 16327020 ID=Msa0350910-mRNA-1;Parent=Msa0350910;Name=Msa0350910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|1|1|1|0.5|0.33|3|238|133
chr3_1 exon 16327020 16327365 16327020 ID=Msa0350910-mRNA-1:exon:3961;Parent=Msa0350910-mRNA-1
chr3_1 exon 16329137 16329284 16329137 ID=Msa0350910-mRNA-1:exon:3962;Parent=Msa0350910-mRNA-1
chr3_1 exon 16329330 16329560 16329330 ID=Msa0350910-mRNA-1:exon:3963;Parent=Msa0350910-mRNA-1
chr3_1 five_prime_UTR 16327020 16327104 16327020 ID=Msa0350910-mRNA-1:five_prime_utr;Parent=Msa0350910-mRNA-1
chr3_1 CDS 16327105 16327365 16327105 ID=Msa0350910-mRNA-1:cds;Parent=Msa0350910-mRNA-1
chr3_1 CDS 16329137 16329277 16329137 ID=Msa0350910-mRNA-1:cds;Parent=Msa0350910-mRNA-1
chr3_1 three_prime_UTR 16329278 16329284 16329278 ID=Msa0350910-mRNA-1:three_prime_utr;Parent=Msa0350910-mRNA-1
chr3_1 three_prime_UTR 16329330 16329560 16329330 ID=Msa0350910-mRNA-1:three_prime_utr;Parent=Msa0350910-mRNA-1
Gene Sequence

>Msa0350910

ATGGCGACGTTATTTCCACTTTCTAATCCAATTTCTCATTCCTTCACATTCCCTTCCTTGCGGGCCCCACCTTCACGCAACTCTCCGCCTCTTCTCCTCACCGGCTGCCGGAGACCGAGAACCGCGACGGTGGTCACACGTGCTGGCGCAAGTACAAGTAGCTATGCTTTTGCGATTGCTCTTCCTCTTTCTCTCCTCGCTGTAACTGTTTTCACTGCTCTTCGGATAGGTGAGAAGCTTGACCAAGATTTCTATGAAGAGATGGCGAAGAACGAAGCTATCATGGAAATTGACGAAGAGGAAGAAGAGGATAATGATGATGATGATGTGGAAACTTATTCACAAGAAGAACAAGAACCGGTCCTTCCACGTGGCCGCAACAGGCCTAAAAGGGAAGCTTAA

Protein sequence

>Msa0350910

MATLFPLSNPISHSFTFPSLRAPPSRNSPPLLLTGCRRPRTATVVTRAGASTSSYAFAIALPLSLLAVTVFTALRIGEKLDQDFYEEMAKNEAIMEIDEEEEEDNDDDDVETYSQEEQEPVLPRGRNRPKREA*