AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183490 MtrunA17_Chr1g0210971 99.482 386 2 0 1 386 1 386 0.0 792
Msa0183490 MtrunA17_Chr4g0004681 33.448 290 166 5 60 349 43 305 1.63e-39 142
Msa0183490 MtrunA17_Chr4g0004711 33.798 287 160 7 66 349 49 308 5.44e-39 141
Msa0183490 MtrunA17_Chr4g0004721 32.990 291 169 6 60 349 44 309 1.69e-37 137
Msa0183490 MtrunA17_Chr4g0000511 34.228 298 173 7 50 346 117 392 3.53e-35 136
Msa0183490 MtrunA17_Chr1g0208141 33.564 289 162 8 63 346 96 359 1.30e-29 120
Msa0183490 MtrunA17_Chr4g0004741 32.990 291 169 7 60 349 43 308 5.57e-27 109
Msa0183490 MtrunA17_Chr8g0351141 27.344 256 166 2 94 349 86 321 6.98e-27 109
Msa0183490 MtrunA17_Chr8g0351121 27.419 248 157 4 94 340 120 345 1.33e-26 108
Msa0183490 MtrunA17_Chr8g0351111 28.571 259 151 8 94 347 83 312 2.41e-26 107
Msa0183490 MtrunA17_Chr2g0331641 29.771 262 157 3 91 349 72 309 6.62e-25 103
Msa0183490 MtrunA17_Chr6g0450811 26.809 235 151 6 94 325 129 345 2.70e-11 64.7
Msa0183490 MtrunA17_Chr7g0248631 24.364 275 181 7 100 365 88 344 6.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183490 AT1G68010.1 88.860 386 43 0 1 386 1 386 0.0 697
Msa0183490 AT1G68010.2 88.630 387 43 1 1 386 1 387 0.0 692
Msa0183490 AT1G68010.3 90.909 341 31 0 1 341 1 341 0.0 625
Msa0183490 AT4G34200.1 34.737 285 164 6 63 346 102 365 7.37e-34 132
Msa0183490 AT1G17745.1 32.558 344 192 11 10 346 76 386 1.41e-33 132
Msa0183490 AT1G79870.1 31.373 306 172 8 45 346 34 305 7.87e-33 125
Msa0183490 AT3G19480.1 33.221 298 176 7 50 346 75 350 1.71e-30 123
Msa0183490 AT1G17745.2 30.435 368 195 11 10 346 76 413 6.95e-29 119
Msa0183490 AT1G79870.2 29.180 305 161 7 45 346 34 286 6.75e-27 108
Msa0183490 AT1G12550.1 27.413 259 163 5 94 350 82 317 8.61e-26 106
Msa0183490 AT2G45630.2 25.723 311 201 6 39 347 45 327 1.06e-23 100
Msa0183490 AT1G72190.1 26.966 267 173 8 88 349 117 366 1.71e-15 77.8

Find 133 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTAGCATCGATTTAA+TGG 0.180188 1_4:+72459729 Msa0183490:three_prime_UTR
TGTATCCATCCTCACTTATA+AGG 0.250595 1_4:+72459796 Msa0183490:three_prime_UTR
TGATGATGTGTAGAGGATTT+TGG 0.254421 1_4:-72455557 None:intergenic
TCACATTAACTTCAAATAAA+AGG 0.264985 1_4:+72455532 Msa0183490:five_prime_UTR
AGCATATGGTGCTTTCTTAA+AGG 0.276108 1_4:+72457996 Msa0183490:intron
CTTGCATTCTTCTGATCTAA+TGG 0.300930 1_4:-72459455 None:intergenic
AACCAGTTTCAATTCAAGTA+TGG 0.311416 1_4:+72455779 Msa0183490:CDS
GTTGTAGTTTATTGAGCAAT+TGG 0.320233 1_4:+72459680 Msa0183490:three_prime_UTR
GATAAGTGTGATGGAGTTAT+TGG 0.337723 1_4:+72456061 Msa0183490:CDS
AGGAAAAGTGTTAATAATAA+AGG 0.340766 1_4:+72459569 Msa0183490:three_prime_UTR
TCTAAATTCATCCATTTCAT+TGG 0.349195 1_4:+72455613 Msa0183490:five_prime_UTR
GTCAATGCTGCAAACAAATA+TGG 0.354110 1_4:+72456648 Msa0183490:CDS
TTCCATACTTGAATTGAAAC+TGG 0.356787 1_4:-72455781 None:intergenic
ATTGAGCAATTGGGAGAGTT+GGG 0.365636 1_4:+72459690 Msa0183490:three_prime_UTR
AGGCAAAGCTTTCAGTAATA+TGG 0.369024 1_4:+72456602 Msa0183490:CDS
GGACAAACAGTTGGTGTTAT+CGG 0.377915 1_4:+72457282 Msa0183490:CDS
TTTCTGCTGTATCAGGTTGA+AGG 0.378719 1_4:+72457830 Msa0183490:intron
CAAGCTTTGAAGGCTCTTGT+AGG 0.382688 1_4:-72459265 None:intergenic
TATGCACACACAAGCTTTGA+AGG 0.385122 1_4:-72459275 None:intergenic
AACTCTAACCTTCTTCATCT+TGG 0.389875 1_4:-72458246 None:intergenic
TTCTCTGCTTTGAGCAAAGC+AGG 0.391693 1_4:+72456579 Msa0183490:CDS
TGTTTATCTGGCAGATTTGT+TGG 0.395143 1_4:+72457246 Msa0183490:intron
AGATTGATCCAACGAGTTCC+AGG 0.398695 1_4:-72455844 None:intergenic
GATTAGTCTTCATCCTATCT+TGG 0.399037 1_4:+72458184 Msa0183490:intron
CAGTATGGTTTGATGCCAAT+AGG 0.402824 1_4:+72459019 Msa0183490:CDS
GTTATCGGAGCTGGCCGTAT+TGG 0.403616 1_4:+72457297 Msa0183490:CDS
TATGTTTCTGACCAATGAAA+TGG 0.405529 1_4:-72455624 None:intergenic
AAGAAATGGCTCCACCCTAT+TGG 0.407299 1_4:-72459034 None:intergenic
GGTAGAGATCGAAGTATATC+AGG 0.410543 1_4:-72457865 None:intergenic
AAAACAAATTGTTCTTATTG+AGG 0.414112 1_4:+72459504 Msa0183490:three_prime_UTR
AGATCAAGGGCTACCCAGTA+TGG 0.420729 1_4:+72459004 Msa0183490:CDS
CTATTGGCATCAAACCATAC+TGG 0.422550 1_4:-72459018 None:intergenic
CGTAGGCCTTGATGTGTTTG+AGG 0.424117 1_4:+72458443 Msa0183490:CDS
ATACACTACAGCTTTGAAAC+TGG 0.431086 1_4:-72459221 None:intergenic
TTCTTCAACTCTGCAAGTCC+AGG 0.432293 1_4:-72458570 None:intergenic
TATTGAGCAATTGGGAGAGT+TGG 0.433084 1_4:+72459689 Msa0183490:three_prime_UTR
TTCTTACTATATCTGCCTCT+TGG 0.435870 1_4:-72458074 None:intergenic
TTGTAGTTTATTGAGCAATT+GGG 0.437297 1_4:+72459681 Msa0183490:three_prime_UTR
TGACTTTGGCAGCTGCTAGA+AGG 0.446003 1_4:+72457027 Msa0183490:CDS
GCTTGCAGCTTCACTGACTT+TGG 0.451429 1_4:+72457013 Msa0183490:CDS
GAAGATATCATTGCTTTGAT+TGG 0.457462 1_4:+72456037 Msa0183490:CDS
ACAATGCTTGGGCATGCAGC+TGG 0.459559 1_4:-72459075 None:intergenic
GGTGCTTTCTTAAAGGCAAA+TGG 0.460883 1_4:+72458003 Msa0183490:CDS
ACTTCAAAAGTACATAAATC+AGG 0.460989 1_4:+72459549 Msa0183490:three_prime_UTR
AGTGCAACTTCATCAATAAC+AGG 0.463873 1_4:-72458387 None:intergenic
AAACACCAGTAACTTGGAAA+AGG 0.465743 1_4:+72458028 Msa0183490:CDS
TATAATACAGGGCAAGATCA+AGG 0.470540 1_4:+72458990 Msa0183490:intron
ACCTTGACTCACTGATTCAA+TGG 0.471925 1_4:+72455753 Msa0183490:exon
CTTGTTGACGAGGTGGTAAG+TGG 0.472748 1_4:-72458213 None:intergenic
AGTATGGTTTGATGCCAATA+GGG 0.473886 1_4:+72459020 Msa0183490:CDS
ACACATTGCTTCTGCTTCCA+AGG 0.479271 1_4:+72458608 Msa0183490:CDS
ATTTAATGGTAGAATGTAGT+AGG 0.480449 1_4:+72459743 Msa0183490:three_prime_UTR
TATTGCAGCTGACTGAAGAC+TGG 0.489700 1_4:+72456544 Msa0183490:intron
AACAAATATGGTGTTGCTGT+TGG 0.490286 1_4:+72456660 Msa0183490:CDS
TTGGAAAAGGGCAGCATCCA+TGG 0.493217 1_4:+72458041 Msa0183490:CDS
ATGGTGAAACACCAGTAACT+TGG 0.493816 1_4:+72458022 Msa0183490:CDS
TTCTGCTGTATCAGGTTGAA+GGG 0.494245 1_4:+72457831 Msa0183490:intron
ATTCAAGTATGGAACCCAAA+TGG 0.502702 1_4:+72455790 Msa0183490:CDS
GCTTTCAGTAATATGGCTGT+TGG 0.504769 1_4:+72456609 Msa0183490:CDS
GCAAGTCCAGGTTTCATGTA+GGG 0.504842 1_4:-72458558 None:intergenic
GTATCCATCCTCACTTATAA+GGG 0.511831 1_4:+72459797 Msa0183490:three_prime_UTR
CGAGTCTTTCCTTGTTGACG+AGG 0.512210 1_4:-72458223 None:intergenic
AACAGAATGATTGAGTGATT+CGG 0.516366 1_4:-72455670 None:intergenic
ACAGTTGGTGTTATCGGAGC+TGG 0.526985 1_4:+72457288 Msa0183490:CDS
GCAGATGAGTTCATGAGGGC+AGG 0.528261 1_4:+72457059 Msa0183490:CDS
GCAGTGGACTCGTGAGGGAA+TGG 0.533885 1_4:+72458848 Msa0183490:intron
ATCCTCACTTATAAGGGAGG+AGG 0.534862 1_4:+72459803 Msa0183490:three_prime_UTR
AACACCAGTAACTTGGAAAA+GGG 0.538959 1_4:+72458029 Msa0183490:CDS
TTGCATAAGCTGATCCAATA+CGG 0.539584 1_4:-72457311 None:intergenic
TCAAGGCCTACGCGAAACAT+TGG 0.540440 1_4:-72458432 None:intergenic
AAAGCTGTAGTGTATGCGTA+CGG 0.544002 1_4:+72459229 Msa0183490:exon
GAAGTTAATGTGAGGTGAGG+AGG 0.544804 1_4:-72455522 None:intergenic
TGCAAGTCCAGGTTTCATGT+AGG 0.550331 1_4:-72458559 None:intergenic
CTCTTGGAGAACCTCGTCCA+TGG 0.559767 1_4:-72458058 None:intergenic
GTCTTTCCTTGTTGACGAGG+TGG 0.560436 1_4:-72458220 None:intergenic
TCCTCACTTATAAGGGAGGA+GGG 0.561330 1_4:+72459804 Msa0183490:three_prime_UTR
GCTAGCAGCTCTAAATGTGC+TGG 0.561333 1_4:+72458875 Msa0183490:CDS
AAGCTGTAGTGTATGCGTAC+GGG 0.565234 1_4:+72459230 Msa0183490:exon
GTGTGATGGAGTTATTGGAC+AGG 0.566011 1_4:+72456066 Msa0183490:CDS
CAATTACCTCAAACACATCA+AGG 0.566746 1_4:-72458449 None:intergenic
TCCTCCCTTATAAGTGAGGA+TGG 0.567206 1_4:-72459801 None:intergenic
GGGCAGGATTATATGATGGC+TGG 0.567472 1_4:+72457075 Msa0183490:CDS
TATTGATGAAGTTGCACTTG+TGG 0.567753 1_4:+72458392 Msa0183490:CDS
AGTCAAGAAAGAACATGTAA+AGG 0.568166 1_4:+72459658 Msa0183490:three_prime_UTR
CACTTACCACCTCGTCAACA+AGG 0.569943 1_4:+72458214 Msa0183490:CDS
ATTCTTATAAACTGCAGTAG+AGG 0.572235 1_4:+72458363 Msa0183490:CDS
GTTAGCACAAAATCAATGCC+TGG 0.572324 1_4:+72455826 Msa0183490:CDS
TTTGAAGTTAATGTGAGGTG+AGG 0.578455 1_4:-72455525 None:intergenic
ATTTGTTGGAAACTTGCTCA+AGG 0.580236 1_4:+72457260 Msa0183490:CDS
GCCATTGAATCAGTGAGTCA+AGG 0.580492 1_4:-72455754 None:intergenic
ATGAGGGCAGGATTATATGA+TGG 0.580751 1_4:+72457071 Msa0183490:CDS
ATTGCAGCTGACTGAAGACT+GGG 0.581549 1_4:+72456545 Msa0183490:intron
ATCAGCTTATGCAAGAATGA+TGG 0.584719 1_4:+72457320 Msa0183490:CDS
AGACTAGAAAAGTTTGTCAC+AGG 0.585130 1_4:+72457896 Msa0183490:CDS
TTATTGAATTCAGATATGTA+CGG 0.587056 1_4:+72455991 Msa0183490:intron
GAATACTTTAAAATAAAATG+AGG 0.587157 1_4:+72459394 Msa0183490:three_prime_UTR
AATCAATGCCTGGAACTCGT+TGG 0.587209 1_4:+72455836 Msa0183490:CDS
TTGATTGGTGATAAGTGTGA+TGG 0.588494 1_4:+72456052 Msa0183490:CDS
GGGAGTTCTCACAGAGACTA+CGG 0.589946 1_4:+72456986 Msa0183490:intron
TTTGTTGGAAACTTGCTCAA+GGG 0.594105 1_4:+72457261 Msa0183490:CDS
GATGAGCCCTACATGAAACC+TGG 0.594414 1_4:+72458552 Msa0183490:CDS
ATAATACAGGGCAAGATCAA+GGG 0.598270 1_4:+72458991 Msa0183490:intron
AAGACTCGCCAAGATGAAGA+AGG 0.601821 1_4:+72458238 Msa0183490:CDS
TTGCTCAAGGGACAAACAGT+TGG 0.607085 1_4:+72457273 Msa0183490:CDS
TATTGGCATCAAACCATACT+GGG 0.608430 1_4:-72459017 None:intergenic
ACAAAGTGCAGTGTTGATGA+CGG 0.610784 1_4:+72459592 Msa0183490:three_prime_UTR
AGCTTGTGTGTGCATACTGA+TGG 0.614699 1_4:+72459282 Msa0183490:three_prime_UTR
TCTTCCTCATCAAGGCAATG+AGG 0.619889 1_4:-72459770 None:intergenic
TTGAGGCAGATGAGTTCATG+AGG 0.619999 1_4:+72457054 Msa0183490:CDS
ATACACATTCTTCCTCATCA+AGG 0.621066 1_4:-72459778 None:intergenic
AAGGGCAGCATCCATGGACG+AGG 0.621564 1_4:+72458047 Msa0183490:CDS
CCTCACTTATAAGGGAGGAG+GGG 0.621943 1_4:+72459805 Msa0183490:three_prime_UTR
TCCATCCTCACTTATAAGGG+AGG 0.634904 1_4:+72459800 Msa0183490:three_prime_UTR
CCCCTCCTCCCTTATAAGTG+AGG 0.635596 1_4:-72459805 None:intergenic
GAAAATCCAATGTTTCGCGT+AGG 0.638637 1_4:+72458426 Msa0183490:CDS
TGAGCCTCATTGCCTTGATG+AGG 0.640353 1_4:+72459766 Msa0183490:three_prime_UTR
AGCTGCTAGAAGGATAGTTG+AGG 0.641144 1_4:+72457037 Msa0183490:CDS
ATGGTTTGATGCCAATAGGG+TGG 0.649631 1_4:+72459023 Msa0183490:CDS
TGAGGCAGATGAGTTCATGA+GGG 0.651617 1_4:+72457055 Msa0183490:CDS
AGTGATTCGGTGTGAAACAG+TGG 0.663359 1_4:-72455657 None:intergenic
TCTGCTTTGAGCAAAGCAGG+AGG 0.664158 1_4:+72456582 Msa0183490:CDS
CATGGACGAGGTTCTCCAAG+AGG 0.666582 1_4:+72458059 Msa0183490:CDS
TGTGAGGTGAGGAGGACATG+AGG 0.671366 1_4:-72455514 None:intergenic
ATGCTTGGGCATGCAGCTGG+AGG 0.674932 1_4:-72459072 None:intergenic
CATGGAATGATGATGTGTAG+AGG 0.682056 1_4:-72455564 None:intergenic
GTGTTTGCAGTGGACTCGTG+AGG 0.684941 1_4:+72458842 Msa0183490:intron
TGTTTGCAGTGGACTCGTGA+GGG 0.684969 1_4:+72458843 Msa0183490:intron
TTGTGTGTGCATACTGATGG+TGG 0.686507 1_4:+72459285 Msa0183490:three_prime_UTR
AGCAATGTGTGGTACTACAA+CGG 0.690341 1_4:-72458595 None:intergenic
GCATACTGATGGTGGCAGTG+TGG 0.695956 1_4:+72459293 Msa0183490:three_prime_UTR
ATTGAATCAGTGAGTCAAGG+TGG 0.706038 1_4:-72455751 None:intergenic
TTGGAAGCAGAAGCAATGTG+TGG 0.717012 1_4:-72458606 None:intergenic
TTGCAGCTGACTGAAGACTG+GGG 0.745652 1_4:+72456546 Msa0183490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTAAATTAT+AGG + chr1_4:72456177-72456196 Msa0183490:intron 0.0%
!!! TTTTAAATTATAGGTTTTTT+TGG + chr1_4:72456186-72456205 Msa0183490:intron 10.0%
!!! TCTAAATAACTATTTTTTAT+TGG + chr1_4:72456268-72456287 Msa0183490:intron 10.0%
!!! AGTTTAAATTTTAACATAAG+AGG + chr1_4:72456446-72456465 Msa0183490:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG + chr1_4:72456742-72456761 Msa0183490:intron 15.0%
!! TCATCATAAACTAAATTATT+AGG - chr1_4:72458153-72458172 None:intergenic 15.0%
!! TTAGAATTAAATTAAGTACA+GGG + chr1_4:72458690-72458709 Msa0183490:intron 15.0%
!!! ATTTTATTTTAAAGTATTCC+TGG - chr1_4:72459393-72459412 None:intergenic 15.0%
!!! GAATACTTTAAAATAAAATG+AGG + chr1_4:72459394-72459413 Msa0183490:three_prime_UTR 15.0%
!!! TTTTATTTGAAGTTAATGTG+AGG - chr1_4:72455533-72455552 None:intergenic 20.0%
!! TCACATTAACTTCAAATAAA+AGG + chr1_4:72455532-72455551 Msa0183490:five_prime_UTR 20.0%
!! TTATTGAATTCAGATATGTA+CGG + chr1_4:72455991-72456010 Msa0183490:intron 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG - chr1_4:72457126-72457145 None:intergenic 20.0%
!! AGTTGCTAATAAAAATTACT+TGG + chr1_4:72457435-72457454 Msa0183490:intron 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG - chr1_4:72457743-72457762 None:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG - chr1_4:72457927-72457946 None:intergenic 20.0%
!! TATCCATTTAAACAAATCAT+AGG - chr1_4:72457928-72457947 None:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG - chr1_4:72458139-72458158 None:intergenic 20.0%
!! AATTATTAGGAATGATCAAA+TGG - chr1_4:72458140-72458159 None:intergenic 20.0%
!!! ACCATGTGATTTTTTTTATT+AGG + chr1_4:72458530-72458549 Msa0183490:intron 20.0%
!! TCCTAATAAAAAAAATCACA+TGG - chr1_4:72458534-72458553 None:intergenic 20.0%
!! ATAACTAAAATTGATTACCT+TGG - chr1_4:72458628-72458647 None:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG + chr1_4:72458689-72458708 Msa0183490:intron 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG - chr1_4:72458782-72458801 None:intergenic 20.0%
!!! GTTTTATTTGCAACAATATT+TGG - chr1_4:72459148-72459167 None:intergenic 20.0%
!!! TATATTTTATTTCTAATCGC+AGG + chr1_4:72459194-72459213 Msa0183490:intron 20.0%
!!! TTATAATTTTCAATTGAACC+AGG + chr1_4:72459372-72459391 Msa0183490:three_prime_UTR 20.0%
!! AAAACAAATTGTTCTTATTG+AGG + chr1_4:72459504-72459523 Msa0183490:three_prime_UTR 20.0%
!!! AGGAAAAGTGTTAATAATAA+AGG + chr1_4:72459569-72459588 Msa0183490:three_prime_UTR 20.0%
!!! TTTAGAAGACTTTGACTTTT+TGG - chr1_4:72455599-72455618 None:intergenic 25.0%
! TCTAAATTCATCCATTTCAT+TGG + chr1_4:72455613-72455632 Msa0183490:five_prime_UTR 25.0%
!!! TATGTGGTTTTTTTACTTCT+GGG + chr1_4:72456212-72456231 Msa0183490:intron 25.0%
! ATATTGTGAATCAAGAATAG+AGG + chr1_4:72456371-72456390 Msa0183490:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG + chr1_4:72456372-72456391 Msa0183490:intron 25.0%
!! ATGTACTAAAGTGTTTATCA+AGG + chr1_4:72456418-72456437 Msa0183490:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG + chr1_4:72456485-72456504 Msa0183490:intron 25.0%
!!! GAAGTTATTTGTTATAACCT+TGG + chr1_4:72456937-72456956 Msa0183490:intron 25.0%
! TTCATATCATTCATTGTGTT+TGG + chr1_4:72456961-72456980 Msa0183490:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG - chr1_4:72457104-72457123 None:intergenic 25.0%
!!! CAGTTTTGATTTTGTTTATC+TGG + chr1_4:72457234-72457253 Msa0183490:intron 25.0%
! AATGCAAAACTGAAATGTAT+GGG - chr1_4:72457353-72457372 None:intergenic 25.0%
! GACTTGGCATAAAATTAAAA+CGG + chr1_4:72457470-72457489 Msa0183490:intron 25.0%
! AAAAAAAAAAGAGAAGCTAG+TGG + chr1_4:72457646-72457665 Msa0183490:intron 25.0%
! ATTGTCACGATATTCAAATT+TGG + chr1_4:72457696-72457715 Msa0183490:intron 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG - chr1_4:72457739-72457758 None:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG + chr1_4:72458335-72458354 Msa0183490:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG - chr1_4:72458779-72458798 None:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG - chr1_4:72458934-72458953 None:intergenic 25.0%
! GTGAAAAATGTTATTACTCA+GGG - chr1_4:72459112-72459131 None:intergenic 25.0%
!! ACTTCAAAAGTACATAAATC+AGG + chr1_4:72459549-72459568 Msa0183490:three_prime_UTR 25.0%
!! TGATGCATGTAATGAATTTT+AGG + chr1_4:72459633-72459652 Msa0183490:three_prime_UTR 25.0%
! TTGTAGTTTATTGAGCAATT+GGG + chr1_4:72459681-72459700 Msa0183490:three_prime_UTR 25.0%
! ATTTAATGGTAGAATGTAGT+AGG + chr1_4:72459743-72459762 Msa0183490:three_prime_UTR 25.0%
! TATGTTTCTGACCAATGAAA+TGG - chr1_4:72455627-72455646 None:intergenic 30.0%
AACAGAATGATTGAGTGATT+CGG - chr1_4:72455673-72455692 None:intergenic 30.0%
AACCAGTTTCAATTCAAGTA+TGG + chr1_4:72455779-72455798 Msa0183490:CDS 30.0%
TTCCATACTTGAATTGAAAC+TGG - chr1_4:72455784-72455803 None:intergenic 30.0%
TTCTTTGTTGAGTCAATCAA+TGG + chr1_4:72455946-72455965 Msa0183490:intron 30.0%
GAAGATATCATTGCTTTGAT+TGG + chr1_4:72456037-72456056 Msa0183490:CDS 30.0%
!!! TAGGTTTTTTTGGTTGTATG+TGG + chr1_4:72456196-72456215 Msa0183490:intron 30.0%
!!! GTATGTGGTTTTTTTACTTC+TGG + chr1_4:72456211-72456230 Msa0183490:intron 30.0%
!!! ATGTGGTTTTTTTACTTCTG+GGG + chr1_4:72456213-72456232 Msa0183490:intron 30.0%
ATTGTGAATCAAGAATAGAG+GGG + chr1_4:72456373-72456392 Msa0183490:intron 30.0%
TTAACATAAAAGCAACTCTC+GGG + chr1_4:72456486-72456505 Msa0183490:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG - chr1_4:72456715-72456734 None:intergenic 30.0%
TCAAAGTTATCATGTATGCT+TGG + chr1_4:72456789-72456808 Msa0183490:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG + chr1_4:72456859-72456878 Msa0183490:intron 30.0%
!! AATAGTGATTAGTCTTGATG+AGG + chr1_4:72456915-72456934 Msa0183490:intron 30.0%
CAATGAATGATATGAAACCA+AGG - chr1_4:72456957-72456976 None:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG + chr1_4:72456965-72456984 Msa0183490:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG + chr1_4:72456966-72456985 Msa0183490:intron 30.0%
CAATGCAAAACTGAAATGTA+TGG - chr1_4:72457354-72457373 None:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG + chr1_4:72457454-72457473 Msa0183490:intron 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG - chr1_4:72457889-72457908 None:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG + chr1_4:72457922-72457941 Msa0183490:intron 30.0%
! TTTTTCCTTATTGCAGCATA+TGG + chr1_4:72457982-72458001 Msa0183490:intron 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG - chr1_4:72458200-72458219 None:intergenic 30.0%
ATTCTTATAAACTGCAGTAG+AGG + chr1_4:72458363-72458382 Msa0183490:CDS 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG - chr1_4:72458747-72458766 None:intergenic 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG - chr1_4:72458748-72458767 None:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG - chr1_4:72458965-72458984 None:intergenic 30.0%
! TGAGCATTTTCATCAAGAAA+TGG - chr1_4:72459051-72459070 None:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG - chr1_4:72459089-72459108 None:intergenic 30.0%
GGTGAAAAATGTTATTACTC+AGG - chr1_4:72459113-72459132 None:intergenic 30.0%
! AAATGAGGAAATTTTGCTTC+TGG + chr1_4:72459409-72459428 Msa0183490:three_prime_UTR 30.0%
AGTCAAGAAAGAACATGTAA+AGG + chr1_4:72459658-72459677 Msa0183490:three_prime_UTR 30.0%
GTTGTAGTTTATTGAGCAAT+TGG + chr1_4:72459680-72459699 Msa0183490:three_prime_UTR 30.0%
!! TCAGATTAGCATCGATTTAA+TGG + chr1_4:72459729-72459748 Msa0183490:three_prime_UTR 30.0%
! TTTGAAGTTAATGTGAGGTG+AGG - chr1_4:72455528-72455547 None:intergenic 35.0%
!! TGATGATGTGTAGAGGATTT+TGG - chr1_4:72455560-72455579 None:intergenic 35.0%
!!! ACTTTTTGGTTGCTTGATCA+TGG - chr1_4:72455585-72455604 None:intergenic 35.0%
! GATGAACGAACTTTTCGTAA+CGG - chr1_4:72455730-72455749 None:intergenic 35.0%
ATTCAAGTATGGAACCCAAA+TGG + chr1_4:72455790-72455809 Msa0183490:CDS 35.0%
! CGACTCTGTATTTTCCATTT+GGG - chr1_4:72455807-72455826 None:intergenic 35.0%
! ACGACTCTGTATTTTCCATT+TGG - chr1_4:72455808-72455827 None:intergenic 35.0%
! TTGATTGGTGATAAGTGTGA+TGG + chr1_4:72456052-72456071 Msa0183490:CDS 35.0%
! GATAAGTGTGATGGAGTTAT+TGG + chr1_4:72456061-72456080 Msa0183490:CDS 35.0%
TTGTGAATCAAGAATAGAGG+GGG + chr1_4:72456374-72456393 Msa0183490:intron 35.0%
! CTAAAGTGTTTATCAAGGAG+AGG + chr1_4:72456423-72456442 Msa0183490:intron 35.0%
AGGCAAAGCTTTCAGTAATA+TGG + chr1_4:72456602-72456621 Msa0183490:CDS 35.0%
GTCAATGCTGCAAACAAATA+TGG + chr1_4:72456648-72456667 Msa0183490:CDS 35.0%
!! AACAAATATGGTGTTGCTGT+TGG + chr1_4:72456660-72456679 Msa0183490:CDS 35.0%
GAATGAAAGAGAAAGCTTAC+AGG - chr1_4:72456693-72456712 None:intergenic 35.0%
TTATCATGTATGCTTGGATG+AGG + chr1_4:72456795-72456814 Msa0183490:intron 35.0%
TATCATGTATGCTTGGATGA+GGG + chr1_4:72456796-72456815 Msa0183490:intron 35.0%
TGCTGAATCGGTTGTAATTA+TGG + chr1_4:72456871-72456890 Msa0183490:intron 35.0%
TGTTTATCTGGCAGATTTGT+TGG + chr1_4:72457246-72457265 Msa0183490:intron 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG + chr1_4:72457260-72457279 Msa0183490:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG + chr1_4:72457261-72457280 Msa0183490:CDS 35.0%
TTGCATAAGCTGATCCAATA+CGG - chr1_4:72457314-72457333 None:intergenic 35.0%
ATCAGCTTATGCAAGAATGA+TGG + chr1_4:72457320-72457339 Msa0183490:CDS 35.0%
CAATCAAGTGAACCTGAAAT+GGG - chr1_4:72457390-72457409 None:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG - chr1_4:72457391-72457410 None:intergenic 35.0%
ATCCTACTTGAAAGTTCTCT+AGG + chr1_4:72457498-72457517 Msa0183490:intron 35.0%
CTCTAGGTCACATAATATCT+AGG + chr1_4:72457514-72457533 Msa0183490:intron 35.0%
TTCAAATTTGGCCAAGTTAC+TGG + chr1_4:72457708-72457727 Msa0183490:intron 35.0%
! TGATTCTTTTCTGCTGTATC+AGG + chr1_4:72457823-72457842 Msa0183490:intron 35.0%
AGACTAGAAAAGTTTGTCAC+AGG + chr1_4:72457896-72457915 Msa0183490:CDS 35.0%
AGCATATGGTGCTTTCTTAA+AGG + chr1_4:72457996-72458015 Msa0183490:intron 35.0%
AAACACCAGTAACTTGGAAA+AGG + chr1_4:72458028-72458047 Msa0183490:CDS 35.0%
AACACCAGTAACTTGGAAAA+GGG + chr1_4:72458029-72458048 Msa0183490:CDS 35.0%
TTCTTACTATATCTGCCTCT+TGG - chr1_4:72458077-72458096 None:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG + chr1_4:72458184-72458203 Msa0183490:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG - chr1_4:72458249-72458268 None:intergenic 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG + chr1_4:72458251-72458270 Msa0183490:intron 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG + chr1_4:72458252-72458271 Msa0183490:intron 35.0%
AAATTACTTATGGCATCACG+TGG + chr1_4:72458293-72458312 Msa0183490:intron 35.0%
AGTGCAACTTCATCAATAAC+AGG - chr1_4:72458390-72458409 None:intergenic 35.0%
TATTGATGAAGTTGCACTTG+TGG + chr1_4:72458392-72458411 Msa0183490:CDS 35.0%
CAATTACCTCAAACACATCA+AGG - chr1_4:72458452-72458471 None:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG + chr1_4:72458467-72458486 Msa0183490:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG - chr1_4:72458477-72458496 None:intergenic 35.0%
AATCACATGGTGTCTTGAAA+AGG - chr1_4:72458521-72458540 None:intergenic 35.0%
ATGAGCCTCCTTATAATACA+GGG + chr1_4:72458979-72458998 Msa0183490:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG - chr1_4:72458990-72459009 None:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG + chr1_4:72458990-72459009 Msa0183490:intron 35.0%
ATAATACAGGGCAAGATCAA+GGG + chr1_4:72458991-72459010 Msa0183490:intron 35.0%
TATTGGCATCAAACCATACT+GGG - chr1_4:72459020-72459039 None:intergenic 35.0%
AGTATGGTTTGATGCCAATA+GGG + chr1_4:72459020-72459039 Msa0183490:CDS 35.0%
! GCTTTTGCATTAACAATGCT+TGG - chr1_4:72459090-72459109 None:intergenic 35.0%
! ACATTTTTCACCCTTTCACT+TGG + chr1_4:72459121-72459140 Msa0183490:intron 35.0%
! CATTTTTCACCCTTTCACTT+GGG + chr1_4:72459122-72459141 Msa0183490:intron 35.0%
AATATTTGGCCCAAGTGAAA+GGG - chr1_4:72459134-72459153 None:intergenic 35.0%
!! ATACACTACAGCTTTGAAAC+TGG - chr1_4:72459224-72459243 None:intergenic 35.0%
CTTGCATTCTTCTGATCTAA+TGG - chr1_4:72459458-72459477 None:intergenic 35.0%
ATACACATTCTTCCTCATCA+AGG - chr1_4:72459781-72459800 None:intergenic 35.0%
TGTATCCATCCTCACTTATA+AGG + chr1_4:72459796-72459815 Msa0183490:three_prime_UTR 35.0%
GTATCCATCCTCACTTATAA+GGG + chr1_4:72459797-72459816 Msa0183490:three_prime_UTR 35.0%
! CATGGAATGATGATGTGTAG+AGG - chr1_4:72455567-72455586 None:intergenic 40.0%
ATTGAATCAGTGAGTCAAGG+TGG - chr1_4:72455754-72455773 None:intergenic 40.0%
!! ACCTTGACTCACTGATTCAA+TGG + chr1_4:72455753-72455772 Msa0183490:exon 40.0%
GTTAGCACAAAATCAATGCC+TGG + chr1_4:72455826-72455845 Msa0183490:CDS 40.0%
GCTTTCAGTAATATGGCTGT+TGG + chr1_4:72456609-72456628 Msa0183490:CDS 40.0%
GACTTGTACTGCTAAACCTT+CGG + chr1_4:72456828-72456847 Msa0183490:intron 40.0%
ACTTGTACTGCTAAACCTTC+GGG + chr1_4:72456829-72456848 Msa0183490:intron 40.0%
ATATACATGCATGTACCCGA+AGG - chr1_4:72456847-72456866 None:intergenic 40.0%
ATGAGGGCAGGATTATATGA+TGG + chr1_4:72457071-72457090 Msa0183490:CDS 40.0%
TGTGCTATACACTCTTCTGA+AGG + chr1_4:72457202-72457221 Msa0183490:intron 40.0%
!! GGACAAACAGTTGGTGTTAT+CGG + chr1_4:72457282-72457301 Msa0183490:CDS 40.0%
ATGTCTATCCATCCCATTTC+AGG + chr1_4:72457375-72457394 Msa0183490:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG - chr1_4:72457503-72457522 None:intergenic 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG + chr1_4:72457830-72457849 Msa0183490:intron 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG + chr1_4:72457831-72457850 Msa0183490:intron 40.0%
GGTAGAGATCGAAGTATATC+AGG - chr1_4:72457868-72457887 None:intergenic 40.0%
AAGCACCATATGCTGCAATA+AGG - chr1_4:72457990-72458009 None:intergenic 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG + chr1_4:72458003-72458022 Msa0183490:CDS 40.0%
ATGGTGAAACACCAGTAACT+TGG + chr1_4:72458022-72458041 Msa0183490:CDS 40.0%
CAGCTACAAAGTTTAACTCG+AGG - chr1_4:72458107-72458126 None:intergenic 40.0%
GAAAATCCAATGTTTCGCGT+AGG + chr1_4:72458426-72458445 Msa0183490:CDS 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG + chr1_4:72458478-72458497 Msa0183490:intron 40.0%
AGCAATGTGTGGTACTACAA+CGG - chr1_4:72458598-72458617 None:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG - chr1_4:72458739-72458758 None:intergenic 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG - chr1_4:72458740-72458759 None:intergenic 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG - chr1_4:72458741-72458760 None:intergenic 40.0%
GGTGGATATGCAAATGTTAG+TGG - chr1_4:72458761-72458780 None:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG + chr1_4:72458832-72458851 Msa0183490:intron 40.0%
ATCCAAGATGGAGAGACATA+GGG - chr1_4:72458906-72458925 None:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG - chr1_4:72458907-72458926 None:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG - chr1_4:72458918-72458937 None:intergenic 40.0%
GATGAGCCTCCTTATAATAC+AGG + chr1_4:72458978-72458997 Msa0183490:intron 40.0%
TCTTGCCCTGTATTATAAGG+AGG - chr1_4:72458987-72459006 None:intergenic 40.0%
CTATTGGCATCAAACCATAC+TGG - chr1_4:72459021-72459040 None:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG + chr1_4:72459019-72459038 Msa0183490:CDS 40.0%
CAATATTTGGCCCAAGTGAA+AGG - chr1_4:72459135-72459154 None:intergenic 40.0%
AAAGCTGTAGTGTATGCGTA+CGG + chr1_4:72459229-72459248 Msa0183490:exon 40.0%
! TATGCACACACAAGCTTTGA+AGG - chr1_4:72459278-72459297 None:intergenic 40.0%
!! ACAAAGTGCAGTGTTGATGA+CGG + chr1_4:72459592-72459611 Msa0183490:three_prime_UTR 40.0%
TATTGAGCAATTGGGAGAGT+TGG + chr1_4:72459689-72459708 Msa0183490:three_prime_UTR 40.0%
ATTGAGCAATTGGGAGAGTT+GGG + chr1_4:72459690-72459709 Msa0183490:three_prime_UTR 40.0%
GAAGTTAATGTGAGGTGAGG+AGG - chr1_4:72455525-72455544 None:intergenic 45.0%
!! AGTGATTCGGTGTGAAACAG+TGG - chr1_4:72455660-72455679 None:intergenic 45.0%
GCCATTGAATCAGTGAGTCA+AGG - chr1_4:72455757-72455776 None:intergenic 45.0%
AATCAATGCCTGGAACTCGT+TGG + chr1_4:72455836-72455855 Msa0183490:CDS 45.0%
AGATTGATCCAACGAGTTCC+AGG - chr1_4:72455847-72455866 None:intergenic 45.0%
! GTGTGATGGAGTTATTGGAC+AGG + chr1_4:72456066-72456085 Msa0183490:CDS 45.0%
ATAAAAGCAACTCTCGGGAG+AGG + chr1_4:72456491-72456510 Msa0183490:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG + chr1_4:72456492-72456511 Msa0183490:intron 45.0%
TATTGCAGCTGACTGAAGAC+TGG + chr1_4:72456544-72456563 Msa0183490:intron 45.0%
ATTGCAGCTGACTGAAGACT+GGG + chr1_4:72456545-72456564 Msa0183490:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG + chr1_4:72456579-72456598 Msa0183490:CDS 45.0%
AGCTGCTAGAAGGATAGTTG+AGG + chr1_4:72457037-72457056 Msa0183490:CDS 45.0%
TTGAGGCAGATGAGTTCATG+AGG + chr1_4:72457054-72457073 Msa0183490:CDS 45.0%
TGAGGCAGATGAGTTCATGA+GGG + chr1_4:72457055-72457074 Msa0183490:CDS 45.0%
! CTATACACTCTTCTGAAGGC+TGG + chr1_4:72457206-72457225 Msa0183490:intron 45.0%
TTGCTCAAGGGACAAACAGT+TGG + chr1_4:72457273-72457292 Msa0183490:CDS 45.0%
CAAGTGAACCTGAAATGGGA+TGG - chr1_4:72457386-72457405 None:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG + chr1_4:72458238-72458257 Msa0183490:CDS 45.0%
CACATGGTGTCTTGAAAAGG+TGG - chr1_4:72458518-72458537 None:intergenic 45.0%
GCAAGTCCAGGTTTCATGTA+GGG - chr1_4:72458561-72458580 None:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG - chr1_4:72458562-72458581 None:intergenic 45.0%
TTCTTCAACTCTGCAAGTCC+AGG - chr1_4:72458573-72458592 None:intergenic 45.0%
TTGGAAGCAGAAGCAATGTG+TGG - chr1_4:72458609-72458628 None:intergenic 45.0%
ACACATTGCTTCTGCTTCCA+AGG + chr1_4:72458608-72458627 Msa0183490:CDS 45.0%
ATCCCTATGTCTCTCCATCT+TGG + chr1_4:72458901-72458920 Msa0183490:intron 45.0%
ATGGTTTGATGCCAATAGGG+TGG + chr1_4:72459023-72459042 Msa0183490:CDS 45.0%
AAGAAATGGCTCCACCCTAT+TGG - chr1_4:72459037-72459056 None:intergenic 45.0%
AAGCTGTAGTGTATGCGTAC+GGG + chr1_4:72459230-72459249 Msa0183490:exon 45.0%
!! CAAGCTTTGAAGGCTCTTGT+AGG - chr1_4:72459268-72459287 None:intergenic 45.0%
AGCTTGTGTGTGCATACTGA+TGG + chr1_4:72459282-72459301 Msa0183490:three_prime_UTR 45.0%
TTGTGTGTGCATACTGATGG+TGG + chr1_4:72459285-72459304 Msa0183490:three_prime_UTR 45.0%
TCTTCCTCATCAAGGCAATG+AGG - chr1_4:72459773-72459792 None:intergenic 45.0%
TCCATCCTCACTTATAAGGG+AGG + chr1_4:72459800-72459819 Msa0183490:three_prime_UTR 45.0%
TCCTCCCTTATAAGTGAGGA+TGG - chr1_4:72459804-72459823 None:intergenic 45.0%
ATCCTCACTTATAAGGGAGG+AGG + chr1_4:72459803-72459822 Msa0183490:three_prime_UTR 45.0%
TCCTCACTTATAAGGGAGGA+GGG + chr1_4:72459804-72459823 Msa0183490:three_prime_UTR 45.0%
!! TTATATATTTAAATTACTTA+TGG + chr1_4:72458283-72458302 Msa0183490:intron 5.0%
TTGCAGCTGACTGAAGACTG+GGG + chr1_4:72456546-72456565 Msa0183490:intron 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG + chr1_4:72456582-72456601 Msa0183490:CDS 50.0%
GGGAGTTCTCACAGAGACTA+CGG + chr1_4:72456986-72457005 Msa0183490:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG + chr1_4:72457013-72457032 Msa0183490:CDS 50.0%
TGACTTTGGCAGCTGCTAGA+AGG + chr1_4:72457027-72457046 Msa0183490:CDS 50.0%
GGGCAGGATTATATGATGGC+TGG + chr1_4:72457075-72457094 Msa0183490:CDS 50.0%
!! ACAGTTGGTGTTATCGGAGC+TGG + chr1_4:72457288-72457307 Msa0183490:CDS 50.0%
GGAAGGCTTGTCCAGTAACT+TGG - chr1_4:72457722-72457741 None:intergenic 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG - chr1_4:72458036-72458055 None:intergenic 50.0%
TTGGAAAAGGGCAGCATCCA+TGG + chr1_4:72458041-72458060 Msa0183490:CDS 50.0%
CTTGTTGACGAGGTGGTAAG+TGG - chr1_4:72458216-72458235 None:intergenic 50.0%
CACTTACCACCTCGTCAACA+AGG + chr1_4:72458214-72458233 Msa0183490:CDS 50.0%
GTCTTTCCTTGTTGACGAGG+TGG - chr1_4:72458223-72458242 None:intergenic 50.0%
CGAGTCTTTCCTTGTTGACG+AGG - chr1_4:72458226-72458245 None:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG - chr1_4:72458435-72458454 None:intergenic 50.0%
CGTAGGCCTTGATGTGTTTG+AGG + chr1_4:72458443-72458462 Msa0183490:CDS 50.0%
GATGAGCCCTACATGAAACC+TGG + chr1_4:72458552-72458571 Msa0183490:CDS 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG + chr1_4:72458843-72458862 Msa0183490:intron 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG + chr1_4:72458875-72458894 Msa0183490:CDS 50.0%
AGATCAAGGGCTACCCAGTA+TGG + chr1_4:72459004-72459023 Msa0183490:CDS 50.0%
TGAGCCTCATTGCCTTGATG+AGG + chr1_4:72459766-72459785 Msa0183490:three_prime_UTR 50.0%
CCTCACTTATAAGGGAGGAG+GGG + chr1_4:72459805-72459824 Msa0183490:three_prime_UTR 50.0%
TGTGAGGTGAGGAGGACATG+AGG - chr1_4:72455517-72455536 None:intergenic 55.0%
GCAGATGAGTTCATGAGGGC+AGG + chr1_4:72457059-72457078 Msa0183490:CDS 55.0%
GTTATCGGAGCTGGCCGTAT+TGG + chr1_4:72457297-72457316 Msa0183490:CDS 55.0%
CTCTTGGAGAACCTCGTCCA+TGG - chr1_4:72458061-72458080 None:intergenic 55.0%
CATGGACGAGGTTCTCCAAG+AGG + chr1_4:72458059-72458078 Msa0183490:CDS 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG + chr1_4:72458654-72458673 Msa0183490:intron 55.0%
TTCATGTCCCCGCAGTGGTA+TGG + chr1_4:72458659-72458678 Msa0183490:intron 55.0%
TCATGTCCCCGCAGTGGTAT+GGG + chr1_4:72458660-72458679 Msa0183490:intron 55.0%
AGTCCCAACCCATACCACTG+CGG - chr1_4:72458671-72458690 None:intergenic 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG + chr1_4:72458842-72458861 Msa0183490:intron 55.0%
ACAATGCTTGGGCATGCAGC+TGG - chr1_4:72459078-72459097 None:intergenic 55.0%
!! GCATACTGATGGTGGCAGTG+TGG + chr1_4:72459293-72459312 Msa0183490:three_prime_UTR 55.0%
CCCCTCCTCCCTTATAAGTG+AGG - chr1_4:72459808-72459827 None:intergenic 55.0%
AAGGGCAGCATCCATGGACG+AGG + chr1_4:72458047-72458066 Msa0183490:CDS 60.0%
TCCCCGCAGTGGTATGGGTT+GGG + chr1_4:72458665-72458684 Msa0183490:intron 60.0%
TCCCAACCCATACCACTGCG+GGG - chr1_4:72458669-72458688 None:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG - chr1_4:72458670-72458689 None:intergenic 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG + chr1_4:72458848-72458867 Msa0183490:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG - chr1_4:72459075-72459094 None:intergenic 60.0%
GTCCCCGCAGTGGTATGGGT+TGG + chr1_4:72458664-72458683 Msa0183490:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72455505 72459847 72455505 ID=Msa0183490;Name=Msa0183490
chr1_4 mRNA 72455505 72459847 72455505 ID=Msa0183490-mRNA-1;Parent=Msa0183490;Name=Msa0183490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267|1|1|1|1|1|13|609|386
chr1_4 exon 72455505 72455894 72455505 ID=Msa0183490-mRNA-1:exon:24445;Parent=Msa0183490-mRNA-1
chr1_4 exon 72456004 72456087 72456004 ID=Msa0183490-mRNA-1:exon:24446;Parent=Msa0183490-mRNA-1
chr1_4 exon 72456552 72456692 72456552 ID=Msa0183490-mRNA-1:exon:24447;Parent=Msa0183490-mRNA-1
chr1_4 exon 72456987 72457108 72456987 ID=Msa0183490-mRNA-1:exon:24448;Parent=Msa0183490-mRNA-1
chr1_4 exon 72457260 72457341 72457260 ID=Msa0183490-mRNA-1:exon:24449;Parent=Msa0183490-mRNA-1
chr1_4 exon 72457845 72457917 72457845 ID=Msa0183490-mRNA-1:exon:24450;Parent=Msa0183490-mRNA-1
chr1_4 exon 72457998 72458089 72457998 ID=Msa0183490-mRNA-1:exon:24451;Parent=Msa0183490-mRNA-1
chr1_4 exon 72458185 72458259 72458185 ID=Msa0183490-mRNA-1:exon:24452;Parent=Msa0183490-mRNA-1
chr1_4 exon 72458357 72458464 72458357 ID=Msa0183490-mRNA-1:exon:24453;Parent=Msa0183490-mRNA-1
chr1_4 exon 72458552 72458629 72458552 ID=Msa0183490-mRNA-1:exon:24454;Parent=Msa0183490-mRNA-1
chr1_4 exon 72458852 72458896 72458852 ID=Msa0183490-mRNA-1:exon:24455;Parent=Msa0183490-mRNA-1
chr1_4 exon 72459000 72459114 72459000 ID=Msa0183490-mRNA-1:exon:24456;Parent=Msa0183490-mRNA-1
chr1_4 exon 72459216 72459847 72459216 ID=Msa0183490-mRNA-1:exon:24457;Parent=Msa0183490-mRNA-1
chr1_4 five_prime_UTR 72455505 72455771 72455505 ID=Msa0183490-mRNA-1:five_prime_utr;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72455772 72455894 72455772 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72456004 72456087 72456004 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72456552 72456692 72456552 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72456987 72457108 72456987 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72457260 72457341 72457260 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72457845 72457917 72457845 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72457998 72458089 72457998 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72458185 72458259 72458185 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72458357 72458464 72458357 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72458552 72458629 72458552 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72458852 72458896 72458852 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72459000 72459114 72459000 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 CDS 72459216 72459238 72459216 ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4 three_prime_UTR 72459239 72459847 72459239 ID=Msa0183490-mRNA-1:three_prime_utr;Parent=Msa0183490-mRNA-1
Gene Sequence

>Msa0183490

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa0183490

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*