AlfalfaGEDB | Msa0183490

M. sativa cultivar zhongmu-4 / Msa0183490

KEGG: K15893
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701
PFAM: PF00389.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183490	XP_013470313.1	99.482	386	2	0	1	386	1	386	0.0	792

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183490	sp\|P13443\|DHGY_CUCSA	90.501	379	36	0	1	379	1	379	0.0	699

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183490	A0A072VRS6	99.482	386	2	0	1	386	1	386	0.0	792

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0183490	0.807035	6.152128e-50	-8.615850e-47
Msa0000220	Msa0183490	0.887557	1.284765e-72	-8.615850e-47
Msa0000780	Msa0183490	0.827278	1.708812e-54	-8.615850e-47
Msa0001420	Msa0183490	0.858213	9.613505e-63	-8.615850e-47
Msa0001460	Msa0183490	0.842889	1.962486e-58	-8.615850e-47
Msa0001510	Msa0183490	0.864364	1.282357e-64	-8.615850e-47
Msa0001540	Msa0183490	0.897796	9.927378e-77	-8.615850e-47
Msa0002060	Msa0183490	0.840418	8.799261e-58	-8.615850e-47
Msa0002690	Msa0183490	0.819393	1.189399e-52	-8.615850e-47
Msa0002700	Msa0183490	0.815646	8.310748e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183490	MtrunA17_Chr1g0210971	99.482	386	2	0	1	386	1	386	0.0	792
Msa0183490	MtrunA17_Chr4g0004681	33.448	290	166	5	60	349	43	305	1.63e-39	142
Msa0183490	MtrunA17_Chr4g0004711	33.798	287	160	7	66	349	49	308	5.44e-39	141
Msa0183490	MtrunA17_Chr4g0004721	32.990	291	169	6	60	349	44	309	1.69e-37	137
Msa0183490	MtrunA17_Chr4g0000511	34.228	298	173	7	50	346	117	392	3.53e-35	136
Msa0183490	MtrunA17_Chr1g0208141	33.564	289	162	8	63	346	96	359	1.30e-29	120
Msa0183490	MtrunA17_Chr4g0004741	32.990	291	169	7	60	349	43	308	5.57e-27	109
Msa0183490	MtrunA17_Chr8g0351141	27.344	256	166	2	94	349	86	321	6.98e-27	109
Msa0183490	MtrunA17_Chr8g0351121	27.419	248	157	4	94	340	120	345	1.33e-26	108
Msa0183490	MtrunA17_Chr8g0351111	28.571	259	151	8	94	347	83	312	2.41e-26	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183490	AT1G68010.1	88.860	386	43	0	1	386	1	386	0.0	697
Msa0183490	AT1G68010.2	88.630	387	43	1	1	386	1	387	0.0	692
Msa0183490	AT1G68010.3	90.909	341	31	0	1	341	1	341	0.0	625
Msa0183490	AT4G34200.1	34.737	285	164	6	63	346	102	365	7.37e-34	132
Msa0183490	AT1G17745.1	32.558	344	192	11	10	346	76	386	1.41e-33	132
Msa0183490	AT1G79870.1	31.373	306	172	8	45	346	34	305	7.87e-33	125
Msa0183490	AT3G19480.1	33.221	298	176	7	50	346	75	350	1.71e-30	123
Msa0183490	AT1G17745.2	30.435	368	195	11	10	346	76	413	6.95e-29	119
Msa0183490	AT1G79870.2	29.180	305	161	7	45	346	34	286	6.75e-27	108
Msa0183490	AT1G12550.1	27.413	259	163	5	94	350	82	317	8.61e-26	106

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Find 133 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTGTTCTTATTG+AGG	0.414112	1_4:+72459504	Msa0183490:three_prime_UTR
AAACACCAGTAACTTGGAAA+AGG	0.465743	1_4:+72458028	Msa0183490:CDS
AAAGCTGTAGTGTATGCGTA+CGG	0.544002	1_4:+72459229	Msa0183490:exon
AACAAATATGGTGTTGCTGT+TGG	0.490286	1_4:+72456660	Msa0183490:CDS
AACACCAGTAACTTGGAAAA+GGG	0.538959	1_4:+72458029	Msa0183490:CDS
AACAGAATGATTGAGTGATT+CGG	0.516366	1_4:-72455670	None:intergenic
AACCAGTTTCAATTCAAGTA+TGG	0.311416	1_4:+72455779	Msa0183490:CDS
AACTCTAACCTTCTTCATCT+TGG	0.389875	1_4:-72458246	None:intergenic
AAGAAATGGCTCCACCCTAT+TGG	0.407299	1_4:-72459034	None:intergenic
AAGACTCGCCAAGATGAAGA+AGG	0.601821	1_4:+72458238	Msa0183490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGAATGATTGAGTGATT+CGG	-	chr1_4:72455673-72455692	None:intergenic	30.0%
AACCAGTTTCAATTCAAGTA+TGG	+	chr1_4:72455779-72455798	Msa0183490:CDS	30.0%
TTCCATACTTGAATTGAAAC+TGG	-	chr1_4:72455784-72455803	None:intergenic	30.0%
TTCTTTGTTGAGTCAATCAA+TGG	+	chr1_4:72455946-72455965	Msa0183490:intron	30.0%
GAAGATATCATTGCTTTGAT+TGG	+	chr1_4:72456037-72456056	Msa0183490:CDS	30.0%
ATTGTGAATCAAGAATAGAG+GGG	+	chr1_4:72456373-72456392	Msa0183490:intron	30.0%
TTAACATAAAAGCAACTCTC+GGG	+	chr1_4:72456486-72456505	Msa0183490:intron	30.0%
TGTTAGTGTCAAAATGATAC+AGG	-	chr1_4:72456715-72456734	None:intergenic	30.0%
TCAAAGTTATCATGTATGCT+TGG	+	chr1_4:72456789-72456808	Msa0183490:intron	30.0%
ATGTATATGTGATGCTGAAT+CGG	+	chr1_4:72456859-72456878	Msa0183490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	72455505	72459847	72455505	ID=Msa0183490;Name=Msa0183490
chr1_4	mRNA	72455505	72459847	72455505	ID=Msa0183490-mRNA-1;Parent=Msa0183490;Name=Msa0183490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267\|1\|1\|1\|1\|1\|13\|609\|386
chr1_4	exon	72455505	72455894	72455505	ID=Msa0183490-mRNA-1:exon:24445;Parent=Msa0183490-mRNA-1
chr1_4	exon	72456004	72456087	72456004	ID=Msa0183490-mRNA-1:exon:24446;Parent=Msa0183490-mRNA-1
chr1_4	exon	72456552	72456692	72456552	ID=Msa0183490-mRNA-1:exon:24447;Parent=Msa0183490-mRNA-1
chr1_4	exon	72456987	72457108	72456987	ID=Msa0183490-mRNA-1:exon:24448;Parent=Msa0183490-mRNA-1
chr1_4	exon	72457260	72457341	72457260	ID=Msa0183490-mRNA-1:exon:24449;Parent=Msa0183490-mRNA-1
chr1_4	exon	72457845	72457917	72457845	ID=Msa0183490-mRNA-1:exon:24450;Parent=Msa0183490-mRNA-1
chr1_4	exon	72457998	72458089	72457998	ID=Msa0183490-mRNA-1:exon:24451;Parent=Msa0183490-mRNA-1
chr1_4	exon	72458185	72458259	72458185	ID=Msa0183490-mRNA-1:exon:24452;Parent=Msa0183490-mRNA-1
chr1_4	exon	72458357	72458464	72458357	ID=Msa0183490-mRNA-1:exon:24453;Parent=Msa0183490-mRNA-1
chr1_4	exon	72458552	72458629	72458552	ID=Msa0183490-mRNA-1:exon:24454;Parent=Msa0183490-mRNA-1
chr1_4	exon	72458852	72458896	72458852	ID=Msa0183490-mRNA-1:exon:24455;Parent=Msa0183490-mRNA-1
chr1_4	exon	72459000	72459114	72459000	ID=Msa0183490-mRNA-1:exon:24456;Parent=Msa0183490-mRNA-1
chr1_4	exon	72459216	72459847	72459216	ID=Msa0183490-mRNA-1:exon:24457;Parent=Msa0183490-mRNA-1
chr1_4	five_prime_UTR	72455505	72455771	72455505	ID=Msa0183490-mRNA-1:five_prime_utr;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72455772	72455894	72455772	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72456004	72456087	72456004	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72456552	72456692	72456552	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72456987	72457108	72456987	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72457260	72457341	72457260	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72457845	72457917	72457845	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72457998	72458089	72457998	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72458185	72458259	72458185	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72458357	72458464	72458357	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72458552	72458629	72458552	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72458852	72458896	72458852	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72459000	72459114	72459000	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	CDS	72459216	72459238	72459216	ID=Msa0183490-mRNA-1:cds;Parent=Msa0183490-mRNA-1
chr1_4	three_prime_UTR	72459239	72459847	72459239	ID=Msa0183490-mRNA-1:three_prime_utr;Parent=Msa0183490-mRNA-1

Gene Sequence

>Msa0183490

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa0183490

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*