Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834220 | XP_003611335.1 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 2.66e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834220 | sp|Q9XHS0|RS12_HORVU | 72.727 | 143 | 38 | 1 | 1 | 142 | 1 | 143 | 8.99e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834220 | G7JXD6 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 1.27e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0834220 | 0.838982 | 2.080174e-57 | -8.615850e-47 |
| Msa0027590 | Msa0834220 | 0.836573 | 8.646289e-57 | -8.615850e-47 |
| Msa0027610 | Msa0834220 | -0.814933 | 1.197061e-51 | -8.615850e-47 |
| Msa0075370 | Msa0834220 | -0.804274 | 2.336691e-49 | -8.615850e-47 |
| Msa0605890 | Msa0834220 | 0.816613 | 5.052803e-52 | -8.615850e-47 |
| Msa0619230 | Msa0834220 | 0.833555 | 4.985688e-56 | -8.615850e-47 |
| Msa0621190 | Msa0834220 | 0.821323 | 4.291150e-53 | -8.615850e-47 |
| Msa0686550 | Msa0834220 | 0.816599 | 5.089050e-52 | -8.615850e-47 |
| Msa0691760 | Msa0834220 | 0.823937 | 1.058524e-53 | -8.615850e-47 |
| Msa0700370 | Msa0834220 | 0.805945 | 1.044503e-49 | -8.615850e-47 |
| Msa0708630 | Msa0834220 | 0.819151 | 1.350228e-52 | -8.615850e-47 |
| Msa0790450 | Msa0834220 | 0.823097 | 1.664141e-53 | -8.615850e-47 |
| Msa0834220 | Msa0929680 | 0.814055 | 1.871668e-51 | -8.615850e-47 |
| Msa0834220 | Msa0929700 | 0.847319 | 1.247130e-59 | -8.615850e-47 |
| Msa0834220 | Msa0930360 | 0.819069 | 1.409403e-52 | -8.615850e-47 |
| Msa0834220 | Msa0930890 | 0.808114 | 3.630585e-50 | -8.615850e-47 |
| Msa0834220 | Msa1025220 | 0.810991 | 8.752859e-51 | -8.615850e-47 |
| Msa0834220 | Msa1082050 | 0.866394 | 2.943772e-65 | -8.615850e-47 |
| Msa0834220 | Msa1116940 | 0.851363 | 9.319350e-61 | -8.615850e-47 |
| Msa0834220 | Msa1136880 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0834220 | Msa1156830 | 0.817133 | 3.861797e-52 | -8.615850e-47 |
| Msa0834220 | Msa1206240 | 0.827729 | 1.332036e-54 | -8.615850e-47 |
| Msa0834220 | Msa1235950 | 0.864705 | 1.002982e-64 | -8.615850e-47 |
| Msa0834220 | Msa1235980 | 0.870873 | 1.049976e-66 | -8.615850e-47 |
| Msa0834220 | Msa1237040 | 0.847575 | 1.060285e-59 | -8.615850e-47 |
| Msa0834220 | Msa1258540 | 0.817726 | 2.839205e-52 | -8.615850e-47 |
| Msa0834220 | Msa1284800 | 0.814745 | 1.317329e-51 | -8.615850e-47 |
| Msa0834220 | Msa1316100 | 0.825089 | 5.668230e-54 | -8.615850e-47 |
| Msa0834220 | Msa1317390 | 0.873477 | 1.426074e-67 | -8.615850e-47 |
| Msa0834220 | Msa1341780 | 0.808120 | 3.619392e-50 | -8.615850e-47 |
| Msa0834220 | Msa1351020 | 0.831874 | 1.303438e-55 | -8.615850e-47 |
| Msa0834220 | Msa1353300 | 0.866156 | 3.502499e-65 | -8.615850e-47 |
| Msa0834220 | Msa1363910 | 0.805984 | 1.024941e-49 | -8.615850e-47 |
| Msa0834220 | Msa1387750 | 0.808667 | 2.767206e-50 | -8.615850e-47 |
| Msa0834220 | Msa1390760 | 0.834449 | 2.977494e-56 | -8.615850e-47 |
| Msa0834220 | Msa1407550 | 0.840558 | 8.089834e-58 | -8.615850e-47 |
| Msa0834220 | Msa1425070 | 0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0834220 | Msa1450560 | 0.826560 | 2.536805e-54 | -8.615850e-47 |
| Msa0834220 | Msa1465700 | 0.898114 | 7.285830e-77 | -8.615850e-47 |
| Msa0123310 | Msa0834220 | -0.802675 | 5.013612e-49 | -8.615850e-47 |
| Msa0132460 | Msa0834220 | 0.819005 | 1.457620e-52 | -8.615850e-47 |
| Msa0167800 | Msa0834220 | -0.808169 | 3.533643e-50 | -8.615850e-47 |
| Msa0167860 | Msa0834220 | 0.836339 | 9.918618e-57 | -8.615850e-47 |
| Msa0168320 | Msa0834220 | 0.848264 | 6.845454e-60 | -8.615850e-47 |
| Msa0182050 | Msa0834220 | 0.821273 | 4.407518e-53 | -8.615850e-47 |
| Msa0182100 | Msa0834220 | 0.838001 | 3.726313e-57 | -8.615850e-47 |
| Msa0183840 | Msa0834220 | 0.803682 | 3.102359e-49 | -8.615850e-47 |
| Msa0188740 | Msa0834220 | 0.808823 | 2.562476e-50 | -8.615850e-47 |
| Msa0191450 | Msa0834220 | 0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa0191550 | Msa0834220 | 0.813580 | 2.381731e-51 | -8.615850e-47 |
| Msa0192300 | Msa0834220 | 0.849359 | 3.401993e-60 | -8.615850e-47 |
| Msa0194940 | Msa0834220 | 0.811613 | 6.414136e-51 | -8.615850e-47 |
| Msa0195030 | Msa0834220 | 0.834685 | 2.598151e-56 | -8.615850e-47 |
| Msa0233550 | Msa0834220 | 0.806826 | 6.812705e-50 | -8.615850e-47 |
| Msa0237180 | Msa0834220 | 0.830077 | 3.598625e-55 | -8.615850e-47 |
| Msa0371490 | Msa0834220 | 0.862914 | 3.614437e-64 | -8.615850e-47 |
| Msa0376850 | Msa0834220 | 0.808544 | 2.940370e-50 | -8.615850e-47 |
| Msa0377520 | Msa0834220 | 0.806858 | 6.704987e-50 | -8.615850e-47 |
| Msa0378620 | Msa0834220 | -0.801245 | 9.861253e-49 | -8.615850e-47 |
| Msa0382670 | Msa0834220 | 0.846322 | 2.335566e-59 | -8.615850e-47 |
| Msa0416470 | Msa0834220 | 0.813362 | 2.659472e-51 | -8.615850e-47 |
| Msa0426090 | Msa0834220 | 0.839321 | 1.699330e-57 | -8.615850e-47 |
| Msa0426250 | Msa0834220 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0472480 | Msa0834220 | 0.848191 | 7.171083e-60 | -8.615850e-47 |
| Msa0481520 | Msa0834220 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
| Msa0239420 | Msa0834220 | 0.819497 | 1.125878e-52 | -8.615850e-47 |
| Msa0274940 | Msa0834220 | 0.812314 | 4.511251e-51 | -8.615850e-47 |
| Msa0277600 | Msa0834220 | 0.805404 | 1.357082e-49 | -8.615850e-47 |
| Msa0281330 | Msa0834220 | 0.806268 | 8.934086e-50 | -8.615850e-47 |
| Msa0281370 | Msa0834220 | 0.825328 | 4.975906e-54 | -8.615850e-47 |
| Msa0301250 | Msa0834220 | 0.863418 | 2.524821e-64 | -8.615850e-47 |
| Msa0313060 | Msa0834220 | 0.847627 | 1.025935e-59 | -8.615850e-47 |
| Msa0315430 | Msa0834220 | 0.818462 | 1.935868e-52 | -8.615850e-47 |
| Msa0315660 | Msa0834220 | 0.828398 | 9.193506e-55 | -8.615850e-47 |
| Msa0340560 | Msa0834220 | 0.820540 | 6.500450e-53 | -8.615850e-47 |
| Msa0511760 | Msa0834220 | 0.805886 | 1.074866e-49 | -8.615850e-47 |
| Msa0516830 | Msa0834220 | 0.809904 | 1.502572e-50 | -8.615850e-47 |
| Msa0547920 | Msa0834220 | 0.804758 | 1.852599e-49 | -8.615850e-47 |
| Msa0573550 | Msa0834220 | 0.824718 | 6.936135e-54 | -8.615850e-47 |
| Msa0574780 | Msa0834220 | 0.839211 | 1.814276e-57 | -8.615850e-47 |
| Msa0597240 | Msa0834220 | 0.800889 | 1.166275e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834220 | MtrunA17_Chr5g0399411 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 2.44e-101 | 286 |
| Msa0834220 | MtrunA17_Chr8g0384331 | 94.444 | 126 | 7 | 0 | 17 | 142 | 18 | 143 | 1.83e-86 | 248 |
| Msa0834220 | MtrunA17_Chr4g0001281 | 94.444 | 126 | 7 | 0 | 17 | 142 | 19 | 144 | 2.46e-85 | 246 |
| Msa0834220 | MtrunA17_Chr4g0037191 | 71.429 | 56 | 14 | 1 | 1 | 54 | 51 | 106 | 1.98e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834220 | AT2G32060.3 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.38e-66 | 199 |
| Msa0834220 | AT2G32060.1 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.38e-66 | 199 |
| Msa0834220 | AT2G32060.2 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 1.38e-66 | 199 |
| Msa0834220 | AT1G15930.1 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 5.53e-64 | 192 |
| Msa0834220 | AT1G15930.2 | 74.400 | 125 | 31 | 1 | 18 | 142 | 21 | 144 | 5.53e-64 | 192 |
Find 51 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACCCTGACATATTTCT+TGG | 0.238476 | 5_4:+7233904 | None:intergenic |
| TTCACCAATTTGACATAATC+AGG | 0.268051 | 5_4:+7232747 | None:intergenic |
| GTTGTTGCTGCTGCAATTCC+AGG | 0.269519 | 5_4:-7232918 | Msa0834220:CDS |
| TGAGACGTGTTCCGTAAAAT+TGG | 0.291782 | 5_4:-7234207 | None:intergenic |
| TTAGTATTAATTGGAAAAGT+AGG | 0.335008 | 5_4:-7234105 | Msa0834220:five_prime_UTR |
| GATGCTCTTGTGTGGTTGTC+AGG | 0.354575 | 5_4:-7232428 | Msa0834220:CDS |
| ACCAGCTGGATGCGATTTGC+AGG | 0.362694 | 5_4:+7234031 | None:intergenic |
| ATGCTGCAAAACAACATTGT+AGG | 0.363171 | 5_4:+7232292 | None:intergenic |
| CATAAGCACGAGACTTTCTA+AGG | 0.363450 | 5_4:+7232859 | None:intergenic |
| CCAACCTGATTATGTCAAAT+TGG | 0.373462 | 5_4:-7232751 | Msa0834220:CDS |
| CTTAGAAAGTCTCGTGCTTA+TGG | 0.383982 | 5_4:-7232858 | Msa0834220:CDS |
| ATCAGGTTGGTCACAATCTT+CGG | 0.412966 | 5_4:+7232764 | None:intergenic |
| ATGATGTCCATTGGCTCGCC+TGG | 0.437864 | 5_4:+7232900 | None:intergenic |
| TTGCAGGAAGGCGGAGATAG+AGG | 0.453615 | 5_4:+7234047 | None:intergenic |
| TAGTATTAATTGGAAAAGTA+GGG | 0.458684 | 5_4:-7234104 | Msa0834220:five_prime_UTR |
| TCTCCAAGGGTCTTTGCACT+TGG | 0.459795 | 5_4:+7232684 | None:intergenic |
| TATCAACCAAGAAATATGTC+AGG | 0.459989 | 5_4:-7233910 | Msa0834220:exon |
| GGAATTGCAGCAGCAACAAC+AGG | 0.463311 | 5_4:+7232921 | None:intergenic |
| GGTAAAGCTAGGAAGGTTAC+CGG | 0.476827 | 5_4:-7232450 | Msa0834220:CDS |
| CCTTAGCAGATACTTCATAA+AGG | 0.484446 | 5_4:+7232186 | None:intergenic |
| CTTGGTTGATATAAAAGAGA+TGG | 0.487724 | 5_4:+7233922 | None:intergenic |
| AACATTGTGCTCTGCGCAGA+GGG | 0.503587 | 5_4:+7232722 | None:intergenic |
| CAGAGAGGGTTTCAATTCGA+TGG | 0.508374 | 5_4:+7234072 | None:intergenic |
| CCTTTATGAAGTATCTGCTA+AGG | 0.520042 | 5_4:-7232186 | Msa0834220:three_prime_UTR |
| GACAACCACACAAGAGCATC+CGG | 0.522597 | 5_4:+7232431 | None:intergenic |
| TCCTGCAAATCGCATCCAGC+TGG | 0.522745 | 5_4:-7234032 | Msa0834220:intron |
| TTACGCCAGCCCACTCTCCA+AGG | 0.529322 | 5_4:+7232670 | None:intergenic |
| CCAATTTGACATAATCAGGT+TGG | 0.530247 | 5_4:+7232751 | None:intergenic |
| TGCAAAGACCCTTGGAGAGT+GGG | 0.530356 | 5_4:-7232679 | Msa0834220:CDS |
| TTTGTTATGCAGTGAAGAAG+AGG | 0.537025 | 5_4:-7232958 | Msa0834220:intron |
| GTTCCAAGTGCAAAGACCCT+TGG | 0.537039 | 5_4:-7232687 | Msa0834220:CDS |
| AAGACCCTTGGAGAGTGGGC+TGG | 0.538691 | 5_4:-7232675 | Msa0834220:CDS |
| TTGATTCAGAAGGTAAAGCT+AGG | 0.543764 | 5_4:-7232461 | Msa0834220:CDS |
| TTCAGAAGGTAAAGCTAGGA+AGG | 0.557714 | 5_4:-7232457 | Msa0834220:CDS |
| CTTTATGAAGTATCTGCTAA+GGG | 0.567729 | 5_4:-7232185 | Msa0834220:three_prime_UTR |
| GCTGGATGCGATTTGCAGGA+AGG | 0.568086 | 5_4:+7234035 | None:intergenic |
| TGCAATTCCAGGCGAGCCAA+TGG | 0.568250 | 5_4:-7232907 | Msa0834220:CDS |
| GTGCAAAGACCCTTGGAGAG+TGG | 0.569975 | 5_4:-7232680 | Msa0834220:CDS |
| ATGCTCTTGTGTGGTTGTCA+GGG | 0.586706 | 5_4:-7232427 | Msa0834220:intron |
| AAAGCAGTCATGATGTCCAT+TGG | 0.589394 | 5_4:+7232891 | None:intergenic |
| CGGAGATAGAGGCACAGAGA+GGG | 0.597269 | 5_4:+7234058 | None:intergenic |
| CTTGCACGAGGTCTTCATGA+AGG | 0.605005 | 5_4:-7232831 | Msa0834220:CDS |
| AGAAAGTCTCGTGCTTATGG+TGG | 0.620799 | 5_4:-7232855 | Msa0834220:CDS |
| TTGTGCAAGATTGATTCAGA+AGG | 0.623879 | 5_4:-7232471 | Msa0834220:CDS |
| TACGCCAGCCCACTCTCCAA+GGG | 0.624257 | 5_4:+7232671 | None:intergenic |
| GCTTATGGTGGTCTTGCACG+AGG | 0.624672 | 5_4:-7232843 | Msa0834220:CDS |
| TAACATTGTGCTCTGCGCAG+AGG | 0.632440 | 5_4:+7232721 | None:intergenic |
| ATCAACCAAGAAATATGTCA+GGG | 0.636797 | 5_4:-7233909 | Msa0834220:intron |
| GGTTACCGGATGCTCTTGTG+TGG | 0.638821 | 5_4:-7232436 | Msa0834220:CDS |
| GCGGAGATAGAGGCACAGAG+AGG | 0.671978 | 5_4:+7234057 | None:intergenic |
| GGATGCGATTTGCAGGAAGG+CGG | 0.685140 | 5_4:+7234038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTAATTTTTTATTTTGT+AGG | + | chr5_4:7232169-7232188 | None:intergenic | 10.0% |
| !!! | TAGTTAATTTTTTATTTTGT+AGG | + | chr5_4:7232169-7232188 | None:intergenic | 10.0% |
| !!! | ATTTTCTAAAACCAATTTTA+CGG | + | chr5_4:7232124-7232143 | None:intergenic | 15.0% |
| !! | AAAAAAACGTTAGTATTAAT+TGG | - | chr5_4:7232203-7232222 | Msa0834220:three_prime_UTR | 15.0% |
| !!! | ATTCTTCTATTTATATGTTT+TGG | - | chr5_4:7233260-7233279 | Msa0834220:intron | 15.0% |
| !! | AAAGTTCACAATATAAATTT+GGG | + | chr5_4:7233735-7233754 | None:intergenic | 15.0% |
| !! | AAAAGTTCACAATATAAATT+TGG | + | chr5_4:7233736-7233755 | None:intergenic | 15.0% |
| !!! | ATTTTCTAAAACCAATTTTA+CGG | + | chr5_4:7232124-7232143 | None:intergenic | 15.0% |
| !! | AAAAAAACGTTAGTATTAAT+TGG | - | chr5_4:7232203-7232222 | Msa0834220:three_prime_UTR | 15.0% |
| !!! | ATTCTTCTATTTATATGTTT+TGG | - | chr5_4:7233260-7233279 | Msa0834220:intron | 15.0% |
| !! | AAAGTTCACAATATAAATTT+GGG | + | chr5_4:7233735-7233754 | None:intergenic | 15.0% |
| !! | AAAAGTTCACAATATAAATT+TGG | + | chr5_4:7233736-7233755 | None:intergenic | 15.0% |
| !!! | TTATTTTGTAGGAAAGTAAA+TGG | + | chr5_4:7232158-7232177 | None:intergenic | 20.0% |
| !! | TTAGTATTAATTGGAAAAGT+AGG | - | chr5_4:7232212-7232231 | Msa0834220:three_prime_UTR | 20.0% |
| !! | TAGTATTAATTGGAAAAGTA+GGG | - | chr5_4:7232213-7232232 | Msa0834220:three_prime_UTR | 20.0% |
| !! | TTCAAATGCAATTGTAATTT+AGG | - | chr5_4:7232474-7232493 | Msa0834220:CDS | 20.0% |
| !!! | ATTTATTTTTTCTTTTGCTG+TGG | + | chr5_4:7232550-7232569 | None:intergenic | 20.0% |
| !!! | TGGAAAGAATTGTTTTTTTT+AGG | - | chr5_4:7232781-7232800 | Msa0834220:CDS | 20.0% |
| !!! | GGAAAGAATTGTTTTTTTTA+GGG | - | chr5_4:7232782-7232801 | Msa0834220:CDS | 20.0% |
| !!! | GAAAGAATTGTTTTTTTTAG+GGG | - | chr5_4:7232783-7232802 | Msa0834220:CDS | 20.0% |
| !!! | AAAGAATTGTTTTTTTTAGG+GGG | - | chr5_4:7232784-7232803 | Msa0834220:CDS | 20.0% |
| !! | TTTGCATAAGCTAAAAAAAT+AGG | + | chr5_4:7232858-7232877 | None:intergenic | 20.0% |
| !! | ATTACTTGTAGTTATTACTA+AGG | + | chr5_4:7233148-7233167 | None:intergenic | 20.0% |
| !!! | TAAAGATTTTTAAACTTGCA+AGG | + | chr5_4:7233313-7233332 | None:intergenic | 20.0% |
| !! | ACAATATAAATTTGGGAATT+GGG | + | chr5_4:7233728-7233747 | None:intergenic | 20.0% |
| !!! | TTATTTTGTAGGAAAGTAAA+TGG | + | chr5_4:7232158-7232177 | None:intergenic | 20.0% |
| !! | TTAGTATTAATTGGAAAAGT+AGG | - | chr5_4:7232212-7232231 | Msa0834220:three_prime_UTR | 20.0% |
| !! | TAGTATTAATTGGAAAAGTA+GGG | - | chr5_4:7232213-7232232 | Msa0834220:three_prime_UTR | 20.0% |
| !! | TTCAAATGCAATTGTAATTT+AGG | - | chr5_4:7232474-7232493 | Msa0834220:CDS | 20.0% |
| !!! | ATTTATTTTTTCTTTTGCTG+TGG | + | chr5_4:7232550-7232569 | None:intergenic | 20.0% |
| !!! | TGGAAAGAATTGTTTTTTTT+AGG | - | chr5_4:7232781-7232800 | Msa0834220:CDS | 20.0% |
| !!! | GGAAAGAATTGTTTTTTTTA+GGG | - | chr5_4:7232782-7232801 | Msa0834220:CDS | 20.0% |
| !!! | GAAAGAATTGTTTTTTTTAG+GGG | - | chr5_4:7232783-7232802 | Msa0834220:CDS | 20.0% |
| !!! | AAAGAATTGTTTTTTTTAGG+GGG | - | chr5_4:7232784-7232803 | Msa0834220:CDS | 20.0% |
| !! | TTTGCATAAGCTAAAAAAAT+AGG | + | chr5_4:7232858-7232877 | None:intergenic | 20.0% |
| !! | ATTACTTGTAGTTATTACTA+AGG | + | chr5_4:7233148-7233167 | None:intergenic | 20.0% |
| !!! | TAAAGATTTTTAAACTTGCA+AGG | + | chr5_4:7233313-7233332 | None:intergenic | 20.0% |
| !! | ACAATATAAATTTGGGAATT+GGG | + | chr5_4:7233728-7233747 | None:intergenic | 20.0% |
| ! | AATTCCTGCATAAAACAAAA+TGG | + | chr5_4:7232370-7232389 | None:intergenic | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | + | chr5_4:7232592-7232611 | None:intergenic | 25.0% |
| ! | TTGCAACATAAAGTAAACTT+AGG | - | chr5_4:7232753-7232772 | Msa0834220:CDS | 25.0% |
| ! | TGCAACATAAAGTAAACTTA+GGG | - | chr5_4:7232754-7232773 | Msa0834220:CDS | 25.0% |
| !! | AATAGGCTTAATTACACTTT+TGG | + | chr5_4:7232841-7232860 | None:intergenic | 25.0% |
| ! | CAAAAATAAGACAATGCAAA+CGG | - | chr5_4:7233018-7233037 | Msa0834220:intron | 25.0% |
| ! | AAAAATAAGACAATGCAAAC+GGG | - | chr5_4:7233019-7233038 | Msa0834220:intron | 25.0% |
| ! | ATCTTAAACGATAAAACTAC+GGG | + | chr5_4:7233062-7233081 | None:intergenic | 25.0% |
| ! | GATCTTAAACGATAAAACTA+CGG | + | chr5_4:7233063-7233082 | None:intergenic | 25.0% |
| !! | AATGTATAGAACTTTTTACC+AGG | + | chr5_4:7233243-7233262 | None:intergenic | 25.0% |
| ! | AAAACTAGGTTAAGAATCAA+GGG | + | chr5_4:7233676-7233695 | None:intergenic | 25.0% |
| ! | TAAAACTAGGTTAAGAATCA+AGG | + | chr5_4:7233677-7233696 | None:intergenic | 25.0% |
| ! | CACAATATAAATTTGGGAAT+TGG | + | chr5_4:7233729-7233748 | None:intergenic | 25.0% |
| ! | TTAGCATGAAAAAAGACAAT+AGG | + | chr5_4:7233944-7233963 | None:intergenic | 25.0% |
| ! | TCCTGCAAACAAAAAAAAAA+GGG | + | chr5_4:7233985-7234004 | None:intergenic | 25.0% |
| ! | ATCCTGCAAACAAAAAAAAA+AGG | + | chr5_4:7233986-7234005 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTTGCAGGATTT+TGG | - | chr5_4:7233988-7234007 | Msa0834220:intron | 25.0% |
| !!! | TTTTTTGTTTGCAGGATTTT+GGG | - | chr5_4:7233989-7234008 | Msa0834220:intron | 25.0% |
| !!! | GGATTTTGATGTTTTTATGA+TGG | - | chr5_4:7234153-7234172 | Msa0834220:five_prime_UTR | 25.0% |
| ! | AATTCCTGCATAAAACAAAA+TGG | + | chr5_4:7232370-7232389 | None:intergenic | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | + | chr5_4:7232592-7232611 | None:intergenic | 25.0% |
| ! | TTGCAACATAAAGTAAACTT+AGG | - | chr5_4:7232753-7232772 | Msa0834220:CDS | 25.0% |
| ! | TGCAACATAAAGTAAACTTA+GGG | - | chr5_4:7232754-7232773 | Msa0834220:CDS | 25.0% |
| !! | AATAGGCTTAATTACACTTT+TGG | + | chr5_4:7232841-7232860 | None:intergenic | 25.0% |
| ! | CAAAAATAAGACAATGCAAA+CGG | - | chr5_4:7233018-7233037 | Msa0834220:intron | 25.0% |
| ! | AAAAATAAGACAATGCAAAC+GGG | - | chr5_4:7233019-7233038 | Msa0834220:intron | 25.0% |
| ! | ATCTTAAACGATAAAACTAC+GGG | + | chr5_4:7233062-7233081 | None:intergenic | 25.0% |
| ! | GATCTTAAACGATAAAACTA+CGG | + | chr5_4:7233063-7233082 | None:intergenic | 25.0% |
| !! | AATGTATAGAACTTTTTACC+AGG | + | chr5_4:7233243-7233262 | None:intergenic | 25.0% |
| ! | AAAACTAGGTTAAGAATCAA+GGG | + | chr5_4:7233676-7233695 | None:intergenic | 25.0% |
| ! | TAAAACTAGGTTAAGAATCA+AGG | + | chr5_4:7233677-7233696 | None:intergenic | 25.0% |
| ! | CACAATATAAATTTGGGAAT+TGG | + | chr5_4:7233729-7233748 | None:intergenic | 25.0% |
| ! | TTAGCATGAAAAAAGACAAT+AGG | + | chr5_4:7233944-7233963 | None:intergenic | 25.0% |
| ! | TCCTGCAAACAAAAAAAAAA+GGG | + | chr5_4:7233985-7234004 | None:intergenic | 25.0% |
| ! | ATCCTGCAAACAAAAAAAAA+AGG | + | chr5_4:7233986-7234005 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTTGCAGGATTT+TGG | - | chr5_4:7233988-7234007 | Msa0834220:intron | 25.0% |
| !!! | TTTTTTGTTTGCAGGATTTT+GGG | - | chr5_4:7233989-7234008 | Msa0834220:intron | 25.0% |
| !!! | GGATTTTGATGTTTTTATGA+TGG | - | chr5_4:7234153-7234172 | Msa0834220:five_prime_UTR | 25.0% |
| TGCATAAAACAAAATGGAAC+GGG | + | chr5_4:7232364-7232383 | None:intergenic | 30.0% | |
| CTGCATAAAACAAAATGGAA+CGG | + | chr5_4:7232365-7232384 | None:intergenic | 30.0% | |
| ! | CTTGGTTGATATAAAAGAGA+TGG | + | chr5_4:7232398-7232417 | None:intergenic | 30.0% |
| TATCAACCAAGAAATATGTC+AGG | - | chr5_4:7232407-7232426 | Msa0834220:intron | 30.0% | |
| ATCAACCAAGAAATATGTCA+GGG | - | chr5_4:7232408-7232427 | Msa0834220:intron | 30.0% | |
| TGGAAATGAGTTATGATAAG+TGG | + | chr5_4:7232530-7232549 | None:intergenic | 30.0% | |
| CAACTTATGAAAACAGCTTA+TGG | + | chr5_4:7232593-7232612 | None:intergenic | 30.0% | |
| ! | TTACTGTTTGACTCGAAATT+AGG | - | chr5_4:7232680-7232699 | Msa0834220:CDS | 30.0% |
| ! | TACTGTTTGACTCGAAATTA+GGG | - | chr5_4:7232681-7232700 | Msa0834220:CDS | 30.0% |
| GCAACATAAAGTAAACTTAG+GGG | - | chr5_4:7232755-7232774 | Msa0834220:CDS | 30.0% | |
| CAACATAAAGTAAACTTAGG+GGG | - | chr5_4:7232756-7232775 | Msa0834220:CDS | 30.0% | |
| AAAATAAGACAATGCAAACG+GGG | - | chr5_4:7233020-7233039 | Msa0834220:intron | 30.0% | |
| AGATAACTGAATCTGATATC+CGG | - | chr5_4:7233119-7233138 | Msa0834220:intron | 30.0% | |
| TTCACCAATTTGACATAATC+AGG | + | chr5_4:7233573-7233592 | None:intergenic | 30.0% | |
| ACAAGGAATTGGATAAAACT+AGG | + | chr5_4:7233690-7233709 | None:intergenic | 30.0% | |
| !!! | TCCCTTTTTTTTTTGTTTGC+AGG | - | chr5_4:7233981-7234000 | Msa0834220:intron | 30.0% |
| !! | TTTTTGTTTGCAGGATTTTG+GGG | - | chr5_4:7233990-7234009 | Msa0834220:intron | 30.0% |
| !! | AAGTTTTTGTTTGACTGTCA+TGG | - | chr5_4:7234102-7234121 | Msa0834220:five_prime_UTR | 30.0% |
| ! | CTTTATGAAGTATCTGCTAA+GGG | - | chr5_4:7234132-7234151 | Msa0834220:five_prime_UTR | 30.0% |
| TGCATAAAACAAAATGGAAC+GGG | + | chr5_4:7232364-7232383 | None:intergenic | 30.0% | |
| CTGCATAAAACAAAATGGAA+CGG | + | chr5_4:7232365-7232384 | None:intergenic | 30.0% | |
| ! | CTTGGTTGATATAAAAGAGA+TGG | + | chr5_4:7232398-7232417 | None:intergenic | 30.0% |
| TATCAACCAAGAAATATGTC+AGG | - | chr5_4:7232407-7232426 | Msa0834220:intron | 30.0% | |
| ATCAACCAAGAAATATGTCA+GGG | - | chr5_4:7232408-7232427 | Msa0834220:intron | 30.0% | |
| TGGAAATGAGTTATGATAAG+TGG | + | chr5_4:7232530-7232549 | None:intergenic | 30.0% | |
| CAACTTATGAAAACAGCTTA+TGG | + | chr5_4:7232593-7232612 | None:intergenic | 30.0% | |
| ! | TTACTGTTTGACTCGAAATT+AGG | - | chr5_4:7232680-7232699 | Msa0834220:CDS | 30.0% |
| ! | TACTGTTTGACTCGAAATTA+GGG | - | chr5_4:7232681-7232700 | Msa0834220:CDS | 30.0% |
| GCAACATAAAGTAAACTTAG+GGG | - | chr5_4:7232755-7232774 | Msa0834220:CDS | 30.0% | |
| CAACATAAAGTAAACTTAGG+GGG | - | chr5_4:7232756-7232775 | Msa0834220:CDS | 30.0% | |
| AAAATAAGACAATGCAAACG+GGG | - | chr5_4:7233020-7233039 | Msa0834220:intron | 30.0% | |
| AGATAACTGAATCTGATATC+CGG | - | chr5_4:7233119-7233138 | Msa0834220:intron | 30.0% | |
| TTCACCAATTTGACATAATC+AGG | + | chr5_4:7233573-7233592 | None:intergenic | 30.0% | |
| ACAAGGAATTGGATAAAACT+AGG | + | chr5_4:7233690-7233709 | None:intergenic | 30.0% | |
| !!! | TCCCTTTTTTTTTTGTTTGC+AGG | - | chr5_4:7233981-7234000 | Msa0834220:intron | 30.0% |
| !! | TTTTTGTTTGCAGGATTTTG+GGG | - | chr5_4:7233990-7234009 | Msa0834220:intron | 30.0% |
| !! | AAGTTTTTGTTTGACTGTCA+TGG | - | chr5_4:7234102-7234121 | Msa0834220:five_prime_UTR | 30.0% |
| ! | CTTTATGAAGTATCTGCTAA+GGG | - | chr5_4:7234132-7234151 | Msa0834220:five_prime_UTR | 30.0% |
| !!! | CGTTCCATTTTGTTTTATGC+AGG | - | chr5_4:7232363-7232382 | Msa0834220:intron | 35.0% |
| ACATACCCTGACATATTTCT+TGG | + | chr5_4:7232416-7232435 | None:intergenic | 35.0% | |
| ATTGTAATTTAGGCCCTGTT+TGG | - | chr5_4:7232484-7232503 | Msa0834220:intron | 35.0% | |
| ATCAGATGTTTGTCCAAACA+GGG | + | chr5_4:7232500-7232519 | None:intergenic | 35.0% | |
| TATCAGATGTTTGTCCAAAC+AGG | + | chr5_4:7232501-7232520 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGTTGTTG+TGG | - | chr5_4:7232596-7232615 | Msa0834220:intron | 35.0% |
| AAATAAGCTGAAGACAGCTA+AGG | - | chr5_4:7232630-7232649 | Msa0834220:intron | 35.0% | |
| ! | ACTGTTTGACTCGAAATTAG+GGG | - | chr5_4:7232682-7232701 | Msa0834220:CDS | 35.0% |
| ! | TCACAACTTTGGGAAACTTA+CGG | - | chr5_4:7232813-7232832 | Msa0834220:CDS | 35.0% |
| GTAGTTATTACTAAGGTGAC+CGG | + | chr5_4:7233141-7233160 | None:intergenic | 35.0% | |
| ! | TTTGTTATGCAGTGAAGAAG+AGG | - | chr5_4:7233359-7233378 | Msa0834220:intron | 35.0% |
| CCAATTTGACATAATCAGGT+TGG | + | chr5_4:7233569-7233588 | None:intergenic | 35.0% | |
| CCAACCTGATTATGTCAAAT+TGG | - | chr5_4:7233566-7233585 | Msa0834220:intron | 35.0% | |
| ATCAATCTTGCACAACTACA+TGG | + | chr5_4:7233841-7233860 | None:intergenic | 35.0% | |
| ! | TTGTGCAAGATTGATTCAGA+AGG | - | chr5_4:7233846-7233865 | Msa0834220:intron | 35.0% |
| TTGATTCAGAAGGTAAAGCT+AGG | - | chr5_4:7233856-7233875 | Msa0834220:intron | 35.0% | |
| ATGCTGCAAAACAACATTGT+AGG | + | chr5_4:7234028-7234047 | None:intergenic | 35.0% | |
| CCTTAGCAGATACTTCATAA+AGG | + | chr5_4:7234134-7234153 | None:intergenic | 35.0% | |
| ! | CCTTTATGAAGTATCTGCTA+AGG | - | chr5_4:7234131-7234150 | Msa0834220:five_prime_UTR | 35.0% |
| !!! | CGTTCCATTTTGTTTTATGC+AGG | - | chr5_4:7232363-7232382 | Msa0834220:intron | 35.0% |
| ACATACCCTGACATATTTCT+TGG | + | chr5_4:7232416-7232435 | None:intergenic | 35.0% | |
| ATTGTAATTTAGGCCCTGTT+TGG | - | chr5_4:7232484-7232503 | Msa0834220:intron | 35.0% | |
| ATCAGATGTTTGTCCAAACA+GGG | + | chr5_4:7232500-7232519 | None:intergenic | 35.0% | |
| TATCAGATGTTTGTCCAAAC+AGG | + | chr5_4:7232501-7232520 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGTTGTTG+TGG | - | chr5_4:7232596-7232615 | Msa0834220:intron | 35.0% |
| AAATAAGCTGAAGACAGCTA+AGG | - | chr5_4:7232630-7232649 | Msa0834220:intron | 35.0% | |
| ! | ACTGTTTGACTCGAAATTAG+GGG | - | chr5_4:7232682-7232701 | Msa0834220:CDS | 35.0% |
| ! | TCACAACTTTGGGAAACTTA+CGG | - | chr5_4:7232813-7232832 | Msa0834220:CDS | 35.0% |
| GTAGTTATTACTAAGGTGAC+CGG | + | chr5_4:7233141-7233160 | None:intergenic | 35.0% | |
| ! | TTTGTTATGCAGTGAAGAAG+AGG | - | chr5_4:7233359-7233378 | Msa0834220:intron | 35.0% |
| CCAATTTGACATAATCAGGT+TGG | + | chr5_4:7233569-7233588 | None:intergenic | 35.0% | |
| CCAACCTGATTATGTCAAAT+TGG | - | chr5_4:7233566-7233585 | Msa0834220:intron | 35.0% | |
| ATCAATCTTGCACAACTACA+TGG | + | chr5_4:7233841-7233860 | None:intergenic | 35.0% | |
| ! | TTGTGCAAGATTGATTCAGA+AGG | - | chr5_4:7233846-7233865 | Msa0834220:intron | 35.0% |
| TTGATTCAGAAGGTAAAGCT+AGG | - | chr5_4:7233856-7233875 | Msa0834220:intron | 35.0% | |
| ATGCTGCAAAACAACATTGT+AGG | + | chr5_4:7234028-7234047 | None:intergenic | 35.0% | |
| CCTTAGCAGATACTTCATAA+AGG | + | chr5_4:7234134-7234153 | None:intergenic | 35.0% | |
| ! | CCTTTATGAAGTATCTGCTA+AGG | - | chr5_4:7234131-7234150 | Msa0834220:five_prime_UTR | 35.0% |
| ! | CTGTTTGACTCGAAATTAGG+GGG | - | chr5_4:7232683-7232702 | Msa0834220:CDS | 40.0% |
| TAAAGTAAACTTAGGGGGCT+TGG | - | chr5_4:7232761-7232780 | Msa0834220:CDS | 40.0% | |
| GGGGTCAAAATCACAACTTT+GGG | - | chr5_4:7232803-7232822 | Msa0834220:CDS | 40.0% | |
| ! | CACAACTTTGGGAAACTTAC+GGG | - | chr5_4:7232814-7232833 | Msa0834220:CDS | 40.0% |
| ! | ACAACTTTGGGAAACTTACG+GGG | - | chr5_4:7232815-7232834 | Msa0834220:CDS | 40.0% |
| TGTCTCAAGATTTATGCTCC+TGG | - | chr5_4:7233222-7233241 | Msa0834220:intron | 40.0% | |
| AGCTATACATGAGACACACA+AGG | + | chr5_4:7233287-7233306 | None:intergenic | 40.0% | |
| AAAGCAGTCATGATGTCCAT+TGG | + | chr5_4:7233429-7233448 | None:intergenic | 40.0% | |
| CATAAGCACGAGACTTTCTA+AGG | + | chr5_4:7233461-7233480 | None:intergenic | 40.0% | |
| CTTAGAAAGTCTCGTGCTTA+TGG | - | chr5_4:7233459-7233478 | Msa0834220:intron | 40.0% | |
| !! | ATCAGGTTGGTCACAATCTT+CGG | + | chr5_4:7233556-7233575 | None:intergenic | 40.0% |
| AATGGATGTGCACAAGGAAT+TGG | + | chr5_4:7233701-7233720 | None:intergenic | 40.0% | |
| ATTTGGGAATTGGGAGCAAA+TGG | + | chr5_4:7233719-7233738 | None:intergenic | 40.0% | |
| TTCAGAAGGTAAAGCTAGGA+AGG | - | chr5_4:7233860-7233879 | Msa0834220:intron | 40.0% | |
| ! | CTGTTTGACTCGAAATTAGG+GGG | - | chr5_4:7232683-7232702 | Msa0834220:CDS | 40.0% |
| TAAAGTAAACTTAGGGGGCT+TGG | - | chr5_4:7232761-7232780 | Msa0834220:CDS | 40.0% | |
| GGGGTCAAAATCACAACTTT+GGG | - | chr5_4:7232803-7232822 | Msa0834220:CDS | 40.0% | |
| ! | CACAACTTTGGGAAACTTAC+GGG | - | chr5_4:7232814-7232833 | Msa0834220:CDS | 40.0% |
| ! | ACAACTTTGGGAAACTTACG+GGG | - | chr5_4:7232815-7232834 | Msa0834220:CDS | 40.0% |
| TGTCTCAAGATTTATGCTCC+TGG | - | chr5_4:7233222-7233241 | Msa0834220:intron | 40.0% | |
| AGCTATACATGAGACACACA+AGG | + | chr5_4:7233287-7233306 | None:intergenic | 40.0% | |
| AAAGCAGTCATGATGTCCAT+TGG | + | chr5_4:7233429-7233448 | None:intergenic | 40.0% | |
| CATAAGCACGAGACTTTCTA+AGG | + | chr5_4:7233461-7233480 | None:intergenic | 40.0% | |
| CTTAGAAAGTCTCGTGCTTA+TGG | - | chr5_4:7233459-7233478 | Msa0834220:intron | 40.0% | |
| !! | ATCAGGTTGGTCACAATCTT+CGG | + | chr5_4:7233556-7233575 | None:intergenic | 40.0% |
| AATGGATGTGCACAAGGAAT+TGG | + | chr5_4:7233701-7233720 | None:intergenic | 40.0% | |
| ATTTGGGAATTGGGAGCAAA+TGG | + | chr5_4:7233719-7233738 | None:intergenic | 40.0% | |
| TTCAGAAGGTAAAGCTAGGA+AGG | - | chr5_4:7233860-7233879 | Msa0834220:intron | 40.0% | |
| CAGAGAGGGTTTCAATTCGA+TGG | + | chr5_4:7232248-7232267 | None:intergenic | 45.0% | |
| AGCTGGTATGTACACTCTCA+CGG | - | chr5_4:7232302-7232321 | Msa0834220:CDS | 45.0% | |
| GGGCCTGGAAAGTAAACTTT+GGG | - | chr5_4:7232703-7232722 | Msa0834220:CDS | 45.0% | |
| GGCCTGGAAAGTAAACTTTG+GGG | - | chr5_4:7232704-7232723 | Msa0834220:CDS | 45.0% | |
| GCCTGGAAAGTAAACTTTGG+GGG | - | chr5_4:7232705-7232724 | Msa0834220:CDS | 45.0% | |
| !! | GTTGCAATTTTAGCCCCTCA+AGG | + | chr5_4:7232740-7232759 | None:intergenic | 45.0% |
| GGGGGTCAAAATCACAACTT+TGG | - | chr5_4:7232802-7232821 | Msa0834220:CDS | 45.0% | |
| GATAAAACTACGGGCCTAGT+TGG | + | chr5_4:7233053-7233072 | None:intergenic | 45.0% | |
| AGAAAGTCTCGTGCTTATGG+TGG | - | chr5_4:7233462-7233481 | Msa0834220:intron | 45.0% | |
| AATGATGCAACAAGACTGCG+CGG | + | chr5_4:7233785-7233804 | None:intergenic | 45.0% | |
| GGTAAAGCTAGGAAGGTTAC+CGG | - | chr5_4:7233867-7233886 | Msa0834220:intron | 45.0% | |
| ATGCTCTTGTGTGGTTGTCA+GGG | - | chr5_4:7233890-7233909 | Msa0834220:intron | 45.0% | |
| !! | TTGTTTGCAGGATTTTGGGG+AGG | - | chr5_4:7233993-7234012 | Msa0834220:intron | 45.0% |
| CAGAGAGGGTTTCAATTCGA+TGG | + | chr5_4:7232248-7232267 | None:intergenic | 45.0% | |
| AGCTGGTATGTACACTCTCA+CGG | - | chr5_4:7232302-7232321 | Msa0834220:CDS | 45.0% | |
| GGGCCTGGAAAGTAAACTTT+GGG | - | chr5_4:7232703-7232722 | Msa0834220:CDS | 45.0% | |
| GGCCTGGAAAGTAAACTTTG+GGG | - | chr5_4:7232704-7232723 | Msa0834220:CDS | 45.0% | |
| GCCTGGAAAGTAAACTTTGG+GGG | - | chr5_4:7232705-7232724 | Msa0834220:CDS | 45.0% | |
| !! | GTTGCAATTTTAGCCCCTCA+AGG | + | chr5_4:7232740-7232759 | None:intergenic | 45.0% |
| GGGGGTCAAAATCACAACTT+TGG | - | chr5_4:7232802-7232821 | Msa0834220:CDS | 45.0% | |
| GATAAAACTACGGGCCTAGT+TGG | + | chr5_4:7233053-7233072 | None:intergenic | 45.0% | |
| AGAAAGTCTCGTGCTTATGG+TGG | - | chr5_4:7233462-7233481 | Msa0834220:intron | 45.0% | |
| AATGATGCAACAAGACTGCG+CGG | + | chr5_4:7233785-7233804 | None:intergenic | 45.0% | |
| GGTAAAGCTAGGAAGGTTAC+CGG | - | chr5_4:7233867-7233886 | Msa0834220:intron | 45.0% | |
| ATGCTCTTGTGTGGTTGTCA+GGG | - | chr5_4:7233890-7233909 | Msa0834220:intron | 45.0% | |
| !! | TTGTTTGCAGGATTTTGGGG+AGG | - | chr5_4:7233993-7234012 | Msa0834220:intron | 45.0% |
| !!! | TTATTTATTTTATTGATTTT+TGG | - | chr5_4:7233805-7233824 | Msa0834220:intron | 5.0% |
| !!! | TATTTATTTTATTGATTTTT+GGG | - | chr5_4:7233806-7233825 | Msa0834220:intron | 5.0% |
| !!! | TTATTTATTTTATTGATTTT+TGG | - | chr5_4:7233805-7233824 | Msa0834220:intron | 5.0% |
| !!! | TATTTATTTTATTGATTTTT+GGG | - | chr5_4:7233806-7233825 | Msa0834220:intron | 5.0% |
| ! | GTGAGAGTGTACATACCAGC+TGG | + | chr5_4:7232303-7232322 | None:intergenic | 50.0% |
| GGGGCCTGGAAAGTAAACTT+TGG | - | chr5_4:7232702-7232721 | Msa0834220:CDS | 50.0% | |
| GCCCCCAAAGTTTACTTTCC+AGG | + | chr5_4:7232709-7232728 | None:intergenic | 50.0% | |
| TGGGGGCTAAAATTGCCTTG+AGG | - | chr5_4:7232722-7232741 | Msa0834220:CDS | 50.0% | |
| GGGGGCTAAAATTGCCTTGA+GGG | - | chr5_4:7232723-7232742 | Msa0834220:CDS | 50.0% | |
| GGGGCTAAAATTGCCTTGAG+GGG | - | chr5_4:7232724-7232743 | Msa0834220:CDS | 50.0% | |
| AACGGGGCCTAAATCCAACT+AGG | - | chr5_4:7233036-7233055 | Msa0834220:intron | 50.0% | |
| CTACGGGCCTAGTTGGATTT+AGG | + | chr5_4:7233046-7233065 | None:intergenic | 50.0% | |
| GGAATTGCAGCAGCAACAAC+AGG | + | chr5_4:7233399-7233418 | None:intergenic | 50.0% | |
| GTTGTTGCTGCTGCAATTCC+AGG | - | chr5_4:7233399-7233418 | Msa0834220:intron | 50.0% | |
| CTTGCACGAGGTCTTCATGA+AGG | - | chr5_4:7233486-7233505 | Msa0834220:intron | 50.0% | |
| AACATTGTGCTCTGCGCAGA+GGG | + | chr5_4:7233598-7233617 | None:intergenic | 50.0% | |
| TAACATTGTGCTCTGCGCAG+AGG | + | chr5_4:7233599-7233618 | None:intergenic | 50.0% | |
| GTTCCAAGTGCAAAGACCCT+TGG | - | chr5_4:7233630-7233649 | Msa0834220:intron | 50.0% | |
| TCTCCAAGGGTCTTTGCACT+TGG | + | chr5_4:7233636-7233655 | None:intergenic | 50.0% | |
| TGCAAAGACCCTTGGAGAGT+GGG | - | chr5_4:7233638-7233657 | Msa0834220:intron | 50.0% | |
| GGAGCAAATGGATGTGCACA+AGG | + | chr5_4:7233707-7233726 | None:intergenic | 50.0% | |
| ATGATGCAACAAGACTGCGC+GGG | + | chr5_4:7233784-7233803 | None:intergenic | 50.0% | |
| !! | GACAACCACACAAGAGCATC+CGG | + | chr5_4:7233889-7233908 | None:intergenic | 50.0% |
| GATGCTCTTGTGTGGTTGTC+AGG | - | chr5_4:7233889-7233908 | Msa0834220:intron | 50.0% | |
| CTTGTGTGGTTGTCAGGGTA+TGG | - | chr5_4:7233895-7233914 | Msa0834220:intron | 50.0% | |
| ! | GTGAGAGTGTACATACCAGC+TGG | + | chr5_4:7232303-7232322 | None:intergenic | 50.0% |
| GGGGCCTGGAAAGTAAACTT+TGG | - | chr5_4:7232702-7232721 | Msa0834220:CDS | 50.0% | |
| GCCCCCAAAGTTTACTTTCC+AGG | + | chr5_4:7232709-7232728 | None:intergenic | 50.0% | |
| TGGGGGCTAAAATTGCCTTG+AGG | - | chr5_4:7232722-7232741 | Msa0834220:CDS | 50.0% | |
| GGGGGCTAAAATTGCCTTGA+GGG | - | chr5_4:7232723-7232742 | Msa0834220:CDS | 50.0% | |
| GGGGCTAAAATTGCCTTGAG+GGG | - | chr5_4:7232724-7232743 | Msa0834220:CDS | 50.0% | |
| AACGGGGCCTAAATCCAACT+AGG | - | chr5_4:7233036-7233055 | Msa0834220:intron | 50.0% | |
| CTACGGGCCTAGTTGGATTT+AGG | + | chr5_4:7233046-7233065 | None:intergenic | 50.0% | |
| GGAATTGCAGCAGCAACAAC+AGG | + | chr5_4:7233399-7233418 | None:intergenic | 50.0% | |
| GTTGTTGCTGCTGCAATTCC+AGG | - | chr5_4:7233399-7233418 | Msa0834220:intron | 50.0% | |
| CTTGCACGAGGTCTTCATGA+AGG | - | chr5_4:7233486-7233505 | Msa0834220:intron | 50.0% | |
| AACATTGTGCTCTGCGCAGA+GGG | + | chr5_4:7233598-7233617 | None:intergenic | 50.0% | |
| TAACATTGTGCTCTGCGCAG+AGG | + | chr5_4:7233599-7233618 | None:intergenic | 50.0% | |
| GTTCCAAGTGCAAAGACCCT+TGG | - | chr5_4:7233630-7233649 | Msa0834220:intron | 50.0% | |
| TCTCCAAGGGTCTTTGCACT+TGG | + | chr5_4:7233636-7233655 | None:intergenic | 50.0% | |
| TGCAAAGACCCTTGGAGAGT+GGG | - | chr5_4:7233638-7233657 | Msa0834220:intron | 50.0% | |
| GGAGCAAATGGATGTGCACA+AGG | + | chr5_4:7233707-7233726 | None:intergenic | 50.0% | |
| ATGATGCAACAAGACTGCGC+GGG | + | chr5_4:7233784-7233803 | None:intergenic | 50.0% | |
| !! | GACAACCACACAAGAGCATC+CGG | + | chr5_4:7233889-7233908 | None:intergenic | 50.0% |
| GATGCTCTTGTGTGGTTGTC+AGG | - | chr5_4:7233889-7233908 | Msa0834220:intron | 50.0% | |
| CTTGTGTGGTTGTCAGGGTA+TGG | - | chr5_4:7233895-7233914 | Msa0834220:intron | 50.0% | |
| ! | CGGAGATAGAGGCACAGAGA+GGG | + | chr5_4:7232262-7232281 | None:intergenic | 55.0% |
| TTGCAGGAAGGCGGAGATAG+AGG | + | chr5_4:7232273-7232292 | None:intergenic | 55.0% | |
| GGATGCGATTTGCAGGAAGG+CGG | + | chr5_4:7232282-7232301 | None:intergenic | 55.0% | |
| GCTGGATGCGATTTGCAGGA+AGG | + | chr5_4:7232285-7232304 | None:intergenic | 55.0% | |
| TCCTGCAAATCGCATCCAGC+TGG | - | chr5_4:7232285-7232304 | Msa0834220:CDS | 55.0% | |
| ACCAGCTGGATGCGATTTGC+AGG | + | chr5_4:7232289-7232308 | None:intergenic | 55.0% | |
| TGACTCGAAATTAGGGGGCC+TGG | - | chr5_4:7232688-7232707 | Msa0834220:CDS | 55.0% | |
| TGCAATTCCAGGCGAGCCAA+TGG | - | chr5_4:7233410-7233429 | Msa0834220:intron | 55.0% | |
| !! | ATGATGTCCATTGGCTCGCC+TGG | + | chr5_4:7233420-7233439 | None:intergenic | 55.0% |
| ! | GCTTATGGTGGTCTTGCACG+AGG | - | chr5_4:7233474-7233493 | Msa0834220:intron | 55.0% |
| GTGCAAAGACCCTTGGAGAG+TGG | - | chr5_4:7233637-7233656 | Msa0834220:intron | 55.0% | |
| GGTTACCGGATGCTCTTGTG+TGG | - | chr5_4:7233881-7233900 | Msa0834220:intron | 55.0% | |
| ! | CGGAGATAGAGGCACAGAGA+GGG | + | chr5_4:7232262-7232281 | None:intergenic | 55.0% |
| TTGCAGGAAGGCGGAGATAG+AGG | + | chr5_4:7232273-7232292 | None:intergenic | 55.0% | |
| GGATGCGATTTGCAGGAAGG+CGG | + | chr5_4:7232282-7232301 | None:intergenic | 55.0% | |
| GCTGGATGCGATTTGCAGGA+AGG | + | chr5_4:7232285-7232304 | None:intergenic | 55.0% | |
| TCCTGCAAATCGCATCCAGC+TGG | - | chr5_4:7232285-7232304 | Msa0834220:CDS | 55.0% | |
| ACCAGCTGGATGCGATTTGC+AGG | + | chr5_4:7232289-7232308 | None:intergenic | 55.0% | |
| TGACTCGAAATTAGGGGGCC+TGG | - | chr5_4:7232688-7232707 | Msa0834220:CDS | 55.0% | |
| TGCAATTCCAGGCGAGCCAA+TGG | - | chr5_4:7233410-7233429 | Msa0834220:intron | 55.0% | |
| !! | ATGATGTCCATTGGCTCGCC+TGG | + | chr5_4:7233420-7233439 | None:intergenic | 55.0% |
| ! | GCTTATGGTGGTCTTGCACG+AGG | - | chr5_4:7233474-7233493 | Msa0834220:intron | 55.0% |
| GTGCAAAGACCCTTGGAGAG+TGG | - | chr5_4:7233637-7233656 | Msa0834220:intron | 55.0% | |
| GGTTACCGGATGCTCTTGTG+TGG | - | chr5_4:7233881-7233900 | Msa0834220:intron | 55.0% | |
| ! | GCGGAGATAGAGGCACAGAG+AGG | + | chr5_4:7232263-7232282 | None:intergenic | 60.0% |
| AAGACCCTTGGAGAGTGGGC+TGG | - | chr5_4:7233642-7233661 | Msa0834220:intron | 60.0% | |
| TACGCCAGCCCACTCTCCAA+GGG | + | chr5_4:7233649-7233668 | None:intergenic | 60.0% | |
| TTACGCCAGCCCACTCTCCA+AGG | + | chr5_4:7233650-7233669 | None:intergenic | 60.0% | |
| ! | GCGGAGATAGAGGCACAGAG+AGG | + | chr5_4:7232263-7232282 | None:intergenic | 60.0% |
| AAGACCCTTGGAGAGTGGGC+TGG | - | chr5_4:7233642-7233661 | Msa0834220:intron | 60.0% | |
| TACGCCAGCCCACTCTCCAA+GGG | + | chr5_4:7233649-7233668 | None:intergenic | 60.0% | |
| TTACGCCAGCCCACTCTCCA+AGG | + | chr5_4:7233650-7233669 | None:intergenic | 60.0% | |
| GCAACAAGACTGCGCGGGCA+TGG | + | chr5_4:7233779-7233798 | None:intergenic | 65.0% | |
| GCAACAAGACTGCGCGGGCA+TGG | + | chr5_4:7233779-7233798 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7232119 | 7234220 | 7232119 | ID=Msa0834220;Name=Msa0834220 |
| chr5_4 | mRNA | 7232119 | 7234220 | 7232119 | ID=Msa0834220-mRNA-1;Parent=Msa0834220;Name=Msa0834220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=225|1|1|1|1|0.8|5|158|142 |
| chr5_4 | exon | 7232119 | 7232336 | 7232119 | ID=Msa0834220-mRNA-1:exon:3231;Parent=Msa0834220-mRNA-1 |
| chr5_4 | exon | 7232428 | 7232493 | 7232428 | ID=Msa0834220-mRNA-1:exon:3230;Parent=Msa0834220-mRNA-1 |
| chr5_4 | exon | 7232674 | 7232968 | 7232674 | ID=Msa0834220-mRNA-1:exon:3229;Parent=Msa0834220-mRNA-1 |
| chr5_4 | exon | 7233910 | 7233954 | 7233910 | ID=Msa0834220-mRNA-1:exon:3228;Parent=Msa0834220-mRNA-1 |
| chr5_4 | exon | 7234033 | 7234220 | 7234033 | ID=Msa0834220-mRNA-1:exon:3227;Parent=Msa0834220-mRNA-1 |
| chr5_4 | five_prime_UTR | 7234033 | 7234220 | 7234033 | ID=Msa0834220-mRNA-1:five_prime_utr;Parent=Msa0834220-mRNA-1 |
| chr5_4 | five_prime_UTR | 7233918 | 7233954 | 7233918 | ID=Msa0834220-mRNA-1:five_prime_utr;Parent=Msa0834220-mRNA-1 |
| chr5_4 | CDS | 7233910 | 7233917 | 7233910 | ID=Msa0834220-mRNA-1:cds;Parent=Msa0834220-mRNA-1 |
| chr5_4 | CDS | 7232674 | 7232968 | 7232674 | ID=Msa0834220-mRNA-1:cds;Parent=Msa0834220-mRNA-1 |
| chr5_4 | CDS | 7232428 | 7232493 | 7232428 | ID=Msa0834220-mRNA-1:cds;Parent=Msa0834220-mRNA-1 |
| chr5_4 | CDS | 7232277 | 7232336 | 7232277 | ID=Msa0834220-mRNA-1:cds;Parent=Msa0834220-mRNA-1 |
| chr5_4 | three_prime_UTR | 7232119 | 7232276 | 7232119 | ID=Msa0834220-mRNA-1:three_prime_utr;Parent=Msa0834220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
