Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354690 | KAH0445491.1 | 74.429 | 219 | 38 | 3 | 1 | 201 | 1 | 219 | 1.67e-95 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354690 | sp|Q9B1A1|RR7_LOTJA | 78.344 | 157 | 23 | 2 | 1 | 149 | 1 | 154 | 1.35e-79 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354690 | A0A445CQA9 | 71.622 | 222 | 39 | 4 | 1 | 201 | 127 | 345 | 1.28e-95 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1354320 | Msa1354690 | 0.801415 | 9.102137e-49 | -8.615850e-47 |
| Msa1354420 | Msa1354690 | 0.904618 | 1.016197e-79 | -8.615850e-47 |
| Msa1354430 | Msa1354690 | 0.838641 | 2.549034e-57 | -8.615850e-47 |
| Msa1354480 | Msa1354690 | 0.848065 | 7.771173e-60 | -8.615850e-47 |
| Msa1354490 | Msa1354690 | 0.916966 | 9.419452e-86 | -8.615850e-47 |
| Msa1354500 | Msa1354690 | 0.868745 | 5.196828e-66 | -8.615850e-47 |
| Msa1354550 | Msa1354690 | 0.915900 | 3.394025e-85 | -8.615850e-47 |
| Msa1354560 | Msa1354690 | 0.831926 | 1.265074e-55 | -8.615850e-47 |
| Msa1354610 | Msa1354690 | 0.850080 | 2.139213e-60 | -8.615850e-47 |
| Msa1354620 | Msa1354690 | 0.917795 | 3.435369e-86 | -8.615850e-47 |
| Msa1354630 | Msa1354690 | 0.873547 | 1.351152e-67 | -8.615850e-47 |
| Msa1354680 | Msa1354690 | 0.867653 | 1.167834e-65 | -8.615850e-47 |
| Msa1354690 | Msa1354700 | 0.816631 | 5.005729e-52 | -8.615850e-47 |
| Msa1354690 | Msa1354740 | 0.837251 | 5.804615e-57 | -8.615850e-47 |
| Msa1354690 | Msa1354750 | 0.894513 | 2.297910e-75 | -8.615850e-47 |
| Msa1354690 | Msa1354760 | 0.858718 | 6.793982e-63 | -8.615850e-47 |
| Msa1354690 | Msa1354810 | 0.903269 | 4.131116e-79 | -8.615850e-47 |
| Msa1354690 | Msa1354820 | 0.854400 | 1.262745e-61 | -8.615850e-47 |
| Msa1354690 | Msa1354910 | 0.818402 | 1.997454e-52 | -8.615850e-47 |
| Msa1354690 | Msa1354920 | 0.816367 | 5.735604e-52 | -8.615850e-47 |
| Msa1354690 | Msa1354930 | 0.817945 | 2.533588e-52 | -8.615850e-47 |
| Msa1354690 | Msa1354980 | 0.901162 | 3.542204e-78 | -8.615850e-47 |
| Msa1354690 | Msa1354990 | 0.857182 | 1.942381e-62 | -8.615850e-47 |
| Msa1354690 | Msa1355070 | 0.803227 | 3.855476e-49 | -8.615850e-47 |
| Msa1354690 | Msa1355080 | 0.826294 | 2.936033e-54 | -8.615850e-47 |
| Msa1354690 | Msa1355090 | 0.820666 | 6.081259e-53 | -8.615850e-47 |
| Msa1354690 | Msa1355100 | 0.820307 | 7.350398e-53 | -8.615850e-47 |
| Msa1354690 | Msa1365890 | 0.889915 | 1.579411e-73 | -8.615850e-47 |
| Msa1354690 | Msa1365900 | 0.842733 | 2.158553e-58 | -8.615850e-47 |
| Msa1354690 | Msa1365950 | 0.848610 | 5.493590e-60 | -8.615850e-47 |
| Msa1354690 | Msa1365960 | 0.882710 | 8.288597e-71 | -8.615850e-47 |
| Msa1354690 | Msa1365970 | 0.876167 | 1.730872e-68 | -8.615850e-47 |
| Msa1354690 | Msa1366080 | 0.897598 | 1.204195e-76 | -8.615850e-47 |
| Msa1354690 | Msa1366090 | 0.823903 | 1.077919e-53 | -8.615850e-47 |
| Msa1354690 | Msa1368230 | 0.904982 | 6.937672e-80 | -8.615850e-47 |
| Msa1354690 | Msa1368240 | 0.867326 | 1.486653e-65 | -8.615850e-47 |
| Msa1354690 | Msa1380600 | 0.823516 | 1.328149e-53 | -8.615850e-47 |
| Msa1354690 | Msa1380620 | 0.814757 | 1.309360e-51 | -8.615850e-47 |
| Msa1354690 | Msa1385410 | 0.869354 | 3.296215e-66 | -8.615850e-47 |
| Msa1354690 | Msa1385420 | 0.807867 | 4.097736e-50 | -8.615850e-47 |
| Msa1354690 | Msa1391090 | 0.835595 | 1.531214e-56 | -8.615850e-47 |
| Msa1354690 | Msa1391100 | 0.888045 | 8.359471e-73 | -8.615850e-47 |
| Msa1354690 | Msa1391110 | 0.865488 | 5.695789e-65 | -8.615850e-47 |
| Msa1354690 | Msa1391160 | 0.894154 | 3.220040e-75 | -8.615850e-47 |
| Msa1354690 | Msa1391170 | 0.830481 | 2.866296e-55 | -8.615850e-47 |
| Msa1354690 | Msa1391220 | 0.844140 | 9.089068e-59 | -8.615850e-47 |
| Msa1354690 | Msa1391230 | 0.900699 | 5.639284e-78 | -8.615850e-47 |
| Msa1354690 | Msa1391240 | 0.881317 | 2.653578e-70 | -8.615850e-47 |
| Msa1354690 | Msa1394030 | 0.809946 | 1.471727e-50 | -8.615850e-47 |
| Msa1354690 | Msa1394040 | 0.843892 | 1.059289e-58 | -8.615850e-47 |
| Msa1354690 | Msa1394150 | 0.824093 | 9.728052e-54 | -8.615850e-47 |
| Msa1354690 | Msa1394160 | 0.815629 | 8.382994e-52 | -8.615850e-47 |
| Msa1354690 | Msa1394210 | 0.832944 | 7.080472e-56 | -8.615850e-47 |
| Msa1354690 | Msa1394220 | 0.806014 | 1.010165e-49 | -8.615850e-47 |
| Msa1354690 | Msa1394230 | 0.806578 | 7.686638e-50 | -8.615850e-47 |
| Msa1354690 | Msa1460120 | 0.853113 | 2.962263e-61 | -8.615850e-47 |
| Msa1354690 | Msa1460130 | 0.862511 | 4.811406e-64 | -8.615850e-47 |
| Msa0202640 | Msa1354690 | 0.824608 | 7.359649e-54 | -8.615850e-47 |
| Msa1305090 | Msa1354690 | 0.847137 | 1.398741e-59 | -8.615850e-47 |
| Msa0370210 | Msa1354690 | 0.833885 | 4.123109e-56 | -8.615850e-47 |
| Msa0405420 | Msa1354690 | 0.824705 | 6.983316e-54 | -8.615850e-47 |
| Msa0405430 | Msa1354690 | 0.868631 | 5.655392e-66 | -8.615850e-47 |
| Msa0405440 | Msa1354690 | 0.854955 | 8.718541e-62 | -8.615850e-47 |
| Msa0405510 | Msa1354690 | 0.842744 | 2.144759e-58 | -8.615850e-47 |
| Msa0405520 | Msa1354690 | 0.851481 | 8.627555e-61 | -8.615850e-47 |
| Msa0405530 | Msa1354690 | 0.845157 | 4.838991e-59 | -8.615850e-47 |
| Msa0983630 | Msa1354690 | 0.895842 | 6.523329e-76 | -8.615850e-47 |
| Msa0983640 | Msa1354690 | 0.834503 | 2.887460e-56 | -8.615850e-47 |
| Msa1022050 | Msa1354690 | 0.885305 | 9.120305e-72 | -8.615850e-47 |
| Msa1022060 | Msa1354690 | 0.822606 | 2.165096e-53 | -8.615850e-47 |
| Msa1064410 | Msa1354690 | 0.830042 | 3.669276e-55 | -8.615850e-47 |
| Msa1086070 | Msa1354690 | 0.806589 | 7.645835e-50 | -8.615850e-47 |
| Msa1086080 | Msa1354690 | 0.806394 | 8.402924e-50 | -8.615850e-47 |
| Msa1086090 | Msa1354690 | 0.827760 | 1.309468e-54 | -8.615850e-47 |
| Msa1086100 | Msa1354690 | 0.814006 | 1.919184e-51 | -8.615850e-47 |
| Msa1086140 | Msa1354690 | 0.828592 | 8.253871e-55 | -8.615850e-47 |
| Msa1086180 | Msa1354690 | 0.806318 | 8.719893e-50 | -8.615850e-47 |
| Msa1086190 | Msa1354690 | 0.821572 | 3.759106e-53 | -8.615850e-47 |
| Msa1086200 | Msa1354690 | 0.819025 | 1.442372e-52 | -8.615850e-47 |
| Msa1086210 | Msa1354690 | 0.815377 | 9.536637e-52 | -8.615850e-47 |
| Msa1086250 | Msa1354690 | 0.802690 | 4.977435e-49 | -8.615850e-47 |
| Msa1086270 | Msa1354690 | 0.835606 | 1.522040e-56 | -8.615850e-47 |
| Msa1086280 | Msa1354690 | 0.802403 | 5.703534e-49 | -8.615850e-47 |
| Msa1086380 | Msa1354690 | 0.804786 | 1.827569e-49 | -8.615850e-47 |
| Msa1086450 | Msa1354690 | 0.806116 | 9.617143e-50 | -8.615850e-47 |
| Msa1086470 | Msa1354690 | 0.801021 | 1.095814e-48 | -8.615850e-47 |
| Msa1086550 | Msa1354690 | 0.834230 | 3.379053e-56 | -8.615850e-47 |
| Msa1086560 | Msa1354690 | 0.806608 | 7.574102e-50 | -8.615850e-47 |
| Msa1086590 | Msa1354690 | 0.856393 | 3.316745e-62 | -8.615850e-47 |
| Msa1086600 | Msa1354690 | 0.860529 | 1.938632e-63 | -8.615850e-47 |
| Msa1086720 | Msa1354690 | 0.849459 | 3.189424e-60 | -8.615850e-47 |
| Msa1086730 | Msa1354690 | 0.902451 | 9.565794e-79 | -8.615850e-47 |
| Msa1086740 | Msa1354690 | 0.875191 | 3.742128e-68 | -8.615850e-47 |
| Msa1086790 | Msa1354690 | 0.895775 | 6.951504e-76 | -8.615850e-47 |
| Msa1086800 | Msa1354690 | 0.866697 | 2.358189e-65 | -8.615850e-47 |
| Msa1086880 | Msa1354690 | 0.810526 | 1.103167e-50 | -8.615850e-47 |
| Msa1086890 | Msa1354690 | 0.801105 | 1.053405e-48 | -8.615850e-47 |
| Msa1086900 | Msa1354690 | 0.803838 | 2.879499e-49 | -8.615850e-47 |
| Msa1086910 | Msa1354690 | 0.808653 | 2.786770e-50 | -8.615850e-47 |
| Msa1086960 | Msa1354690 | 0.890408 | 1.012072e-73 | -8.615850e-47 |
| Msa1086970 | Msa1354690 | 0.824352 | 8.457015e-54 | -8.615850e-47 |
| Msa1087030 | Msa1354690 | 0.852808 | 3.619408e-61 | -8.615850e-47 |
| Msa1087040 | Msa1354690 | 0.890513 | 9.206752e-74 | -8.615850e-47 |
| Msa1087050 | Msa1354690 | 0.877619 | 5.433135e-69 | -8.615850e-47 |
| Msa1087110 | Msa1354690 | 0.892819 | 1.116664e-74 | -8.615850e-47 |
| Msa1087120 | Msa1354690 | 0.829039 | 6.433491e-55 | -8.615850e-47 |
| Msa0263770 | Msa1354690 | 0.842402 | 2.643168e-58 | -8.615850e-47 |
| Msa0268250 | Msa1354690 | 0.862900 | 3.651902e-64 | -8.615850e-47 |
| Msa0268260 | Msa1354690 | 0.890236 | 1.182355e-73 | -8.615850e-47 |
| Msa0268270 | Msa1354690 | 0.867018 | 1.863388e-65 | -8.615850e-47 |
| Msa0268300 | Msa1354690 | 0.864511 | 1.153696e-64 | -8.615850e-47 |
| Msa0268310 | Msa1354690 | 0.856088 | 4.074164e-62 | -8.615850e-47 |
| Msa0268390 | Msa1354690 | 0.810170 | 1.316974e-50 | -8.615850e-47 |
| Msa0268410 | Msa1354690 | 0.809020 | 2.326157e-50 | -8.615850e-47 |
| Msa0268550 | Msa1354690 | 0.804523 | 2.074274e-49 | -8.615850e-47 |
| Msa0268560 | Msa1354690 | 0.834831 | 2.387115e-56 | -8.615850e-47 |
| Msa0268580 | Msa1354690 | 0.823438 | 1.385153e-53 | -8.615850e-47 |
| Msa0268630 | Msa1354690 | 0.819135 | 1.361667e-52 | -8.615850e-47 |
| Msa0268740 | Msa1354690 | 0.829150 | 6.045979e-55 | -8.615850e-47 |
| Msa0268750 | Msa1354690 | 0.811022 | 8.616155e-51 | -8.615850e-47 |
| Msa0268760 | Msa1354690 | 0.807316 | 5.364743e-50 | -8.615850e-47 |
| Msa0268830 | Msa1354690 | 0.844153 | 9.016485e-59 | -8.615850e-47 |
| Msa0268840 | Msa1354690 | 0.810216 | 1.287145e-50 | -8.615850e-47 |
| Msa0268950 | Msa1354690 | 0.816193 | 6.274959e-52 | -8.615850e-47 |
| Msa0268960 | Msa1354690 | 0.821475 | 3.959055e-53 | -8.615850e-47 |
| Msa0269040 | Msa1354690 | 0.845242 | 4.587374e-59 | -8.615850e-47 |
| Msa0269050 | Msa1354690 | 0.810318 | 1.223348e-50 | -8.615850e-47 |
| Msa0269130 | Msa1354690 | 0.840631 | 7.739823e-58 | -8.615850e-47 |
| Msa0269140 | Msa1354690 | 0.898691 | 4.140453e-77 | -8.615850e-47 |
| Msa0269150 | Msa1354690 | 0.881804 | 1.769588e-70 | -8.615850e-47 |
| Msa0344190 | Msa1354690 | 0.809544 | 1.795443e-50 | -8.615850e-47 |
| Msa0344310 | Msa1354690 | 0.833697 | 4.594391e-56 | -8.615850e-47 |
| Msa1143120 | Msa1354690 | 0.831451 | 1.657158e-55 | -8.615850e-47 |
| Msa1143160 | Msa1354690 | 0.805392 | 1.364543e-49 | -8.615850e-47 |
| Msa1143170 | Msa1354690 | 0.803806 | 2.924254e-49 | -8.615850e-47 |
| Msa1143180 | Msa1354690 | 0.825805 | 3.836989e-54 | -8.615850e-47 |
| Msa0582510 | Msa1354690 | 0.836565 | 8.687900e-57 | -8.615850e-47 |
| Msa0582520 | Msa1354690 | 0.807749 | 4.342140e-50 | -8.615850e-47 |
| Msa0582630 | Msa1354690 | 0.812431 | 4.253935e-51 | -8.615850e-47 |
| Msa0582640 | Msa1354690 | 0.839214 | 1.811792e-57 | -8.615850e-47 |
| Msa0582650 | Msa1354690 | 0.807604 | 4.661131e-50 | -8.615850e-47 |
| Msa0582660 | Msa1354690 | 0.821556 | 3.791186e-53 | -8.615850e-47 |
| Msa0582690 | Msa1354690 | 0.836775 | 7.678049e-57 | -8.615850e-47 |
| Msa0582700 | Msa1354690 | 0.811956 | 5.401833e-51 | -8.615850e-47 |
| Msa0582750 | Msa1354690 | 0.823372 | 1.435099e-53 | -8.615850e-47 |
| Msa0582760 | Msa1354690 | 0.835980 | 1.223489e-56 | -8.615850e-47 |
| Msa0582780 | Msa1354690 | 0.825767 | 3.918035e-54 | -8.615850e-47 |
| Msa0582810 | Msa1354690 | 0.834926 | 2.259778e-56 | -8.615850e-47 |
| Msa0582820 | Msa1354690 | 0.806159 | 9.417029e-50 | -8.615850e-47 |
| Msa0582910 | Msa1354690 | 0.834877 | 2.325144e-56 | -8.615850e-47 |
| Msa0582920 | Msa1354690 | 0.805442 | 1.332119e-49 | -8.615850e-47 |
| Msa0582930 | Msa1354690 | 0.827934 | 1.189408e-54 | -8.615850e-47 |
| Msa0591290 | Msa1354690 | 0.844903 | 5.665314e-59 | -8.615850e-47 |
| Msa0591310 | Msa1354690 | 0.839738 | 1.323724e-57 | -8.615850e-47 |
| Msa0591350 | Msa1354690 | 0.898326 | 5.919659e-77 | -8.615850e-47 |
| Msa0591360 | Msa1354690 | 0.821758 | 3.405530e-53 | -8.615850e-47 |
| Msa0591380 | Msa1354690 | 0.834982 | 2.186875e-56 | -8.615850e-47 |
| Msa0867680 | Msa1354690 | 0.900694 | 5.667465e-78 | -8.615850e-47 |
| Msa0867690 | Msa1354690 | 0.850605 | 1.523952e-60 | -8.615850e-47 |
| Msa0908220 | Msa1354690 | 0.853780 | 1.905361e-61 | -8.615850e-47 |
| Msa0908230 | Msa1354690 | 0.926020 | 8.310705e-91 | -8.615850e-47 |
| Msa0908240 | Msa1354690 | 0.869562 | 2.821075e-66 | -8.615850e-47 |
| Msa0908310 | Msa1354690 | 0.876525 | 1.303456e-68 | -8.615850e-47 |
| Msa0908320 | Msa1354690 | 0.831160 | 1.953675e-55 | -8.615850e-47 |
| Msa0908370 | Msa1354690 | 0.881583 | 2.127551e-70 | -8.615850e-47 |
| Msa0908430 | Msa1354690 | 0.847605 | 1.040522e-59 | -8.615850e-47 |
| Msa0908440 | Msa1354690 | 0.924314 | 8.308073e-90 | -8.615850e-47 |
| Msa0908450 | Msa1354690 | 0.891647 | 3.281680e-74 | -8.615850e-47 |
| Msa0908480 | Msa1354690 | 0.828863 | 7.095089e-55 | -8.615850e-47 |
| Msa0908530 | Msa1354690 | 0.895121 | 1.294401e-75 | -8.615850e-47 |
| Msa0908540 | Msa1354690 | 0.843635 | 1.241262e-58 | -8.615850e-47 |
| Msa0908590 | Msa1354690 | 0.835620 | 1.509478e-56 | -8.615850e-47 |
| Msa0908600 | Msa1354690 | 0.881685 | 1.954987e-70 | -8.615850e-47 |
| Msa0908610 | Msa1354690 | 0.830008 | 3.740790e-55 | -8.615850e-47 |
| Msa0908650 | Msa1354690 | 0.841037 | 6.056496e-58 | -8.615850e-47 |
| Msa0908660 | Msa1354690 | 0.890482 | 9.468889e-74 | -8.615850e-47 |
| Msa0908670 | Msa1354690 | 0.868179 | 7.911703e-66 | -8.615850e-47 |
| Msa0908720 | Msa1354690 | 0.894508 | 2.308273e-75 | -8.615850e-47 |
| Msa0908730 | Msa1354690 | 0.832129 | 1.127563e-55 | -8.615850e-47 |
| Msa0911190 | Msa1354690 | 0.842456 | 2.558342e-58 | -8.615850e-47 |
| Msa0911200 | Msa1354690 | 0.836349 | 9.859516e-57 | -8.615850e-47 |
| Msa0911230 | Msa1354690 | 0.806313 | 8.741172e-50 | -8.615850e-47 |
| Msa0924870 | Msa1354690 | 0.804945 | 1.692963e-49 | -8.615850e-47 |
| Msa0924880 | Msa1354690 | 0.808717 | 2.699995e-50 | -8.615850e-47 |
| Msa0924890 | Msa1354690 | 0.806657 | 7.395397e-50 | -8.615850e-47 |
| Msa0924930 | Msa1354690 | 0.869523 | 2.904628e-66 | -8.615850e-47 |
| Msa0924940 | Msa1354690 | 0.841182 | 5.549473e-58 | -8.615850e-47 |
| Msa0925100 | Msa1354690 | 0.873570 | 1.327721e-67 | -8.615850e-47 |
| Msa0925110 | Msa1354690 | 0.854041 | 1.602583e-61 | -8.615850e-47 |
| Msa0931070 | Msa1354690 | 0.830777 | 2.426526e-55 | -8.615850e-47 |
| Msa0931130 | Msa1354690 | 0.824993 | 5.971012e-54 | -8.615850e-47 |
| Msa0931220 | Msa1354690 | 0.819325 | 1.232079e-52 | -8.615850e-47 |
| Msa0931230 | Msa1354690 | 0.803253 | 3.807563e-49 | -8.615850e-47 |
| Msa0931240 | Msa1354690 | 0.813543 | 2.427437e-51 | -8.615850e-47 |
| Msa0931260 | Msa1354690 | 0.846963 | 1.560520e-59 | -8.615850e-47 |
| Msa0931270 | Msa1354690 | 0.810327 | 1.217996e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354690 | MtrunA17_CPg0492421 | 75.472 | 159 | 26 | 2 | 1 | 149 | 1 | 156 | 3.10e-76 | 226 |
| Msa1354690 | MtrunA17_Chr4g0016101 | 75.472 | 159 | 26 | 2 | 1 | 149 | 1 | 156 | 3.10e-76 | 226 |
| Msa1354690 | MtrunA17_Chr3g0090841 | 75.472 | 159 | 26 | 2 | 1 | 149 | 1 | 156 | 3.10e-76 | 226 |
| Msa1354690 | MtrunA17_Chr4g0002541 | 73.333 | 60 | 8 | 1 | 25 | 76 | 1 | 60 | 8.82e-22 | 84.3 |
| Msa1354690 | MtrunA17_CPg0492431 | 97.297 | 37 | 1 | 0 | 165 | 201 | 31 | 67 | 2.47e-17 | 78.2 |
| Msa1354690 | MtrunA17_Chr3g0090851 | 97.297 | 37 | 1 | 0 | 165 | 201 | 31 | 67 | 2.47e-17 | 78.2 |
| Msa1354690 | MtrunA17_Chr4g0016091 | 97.297 | 37 | 1 | 0 | 165 | 201 | 31 | 67 | 2.47e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354690 | ATCG00900.1 | 77.070 | 157 | 25 | 2 | 1 | 149 | 1 | 154 | 1.86e-79 | 234 |
| Msa1354690 | ATCG01240.1 | 77.070 | 157 | 25 | 2 | 1 | 149 | 1 | 154 | 1.86e-79 | 234 |
Find 34 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATCGATTACGATAAAT+TGG | 0.238141 | tig0014543:-451850 | None:intergenic |
| TCCGGAATTGATCCTAATTT+TGG | 0.252033 | tig0014543:+452596 | Msa1354690:CDS |
| CTTGCCATTCGTTGGTTATT+AGG | 0.268444 | tig0014543:+452099 | Msa1354690:CDS |
| CATCAAGTTCCCGTTGAAAT+AGG | 0.307921 | tig0014543:+452057 | Msa1354690:CDS |
| AAAACGTCCAGGTCGAAATA+TGG | 0.317789 | tig0014543:+452131 | Msa1354690:CDS |
| AGAAGAATTAGACCAAAATT+AGG | 0.319968 | tig0014543:-452608 | None:intergenic |
| CAAATTAAGTTCCGAATTAG+TGG | 0.342047 | tig0014543:+452158 | Msa1354690:CDS |
| ACCAAAATTAGGATCAATTC+CGG | 0.350320 | tig0014543:-452597 | None:intergenic |
| TGGCGATGCCATACGCAAAA+AGG | 0.366109 | tig0014543:+452196 | Msa1354690:CDS |
| CTTGGCAGCATCCACTAATT+CGG | 0.392237 | tig0014543:-452169 | None:intergenic |
| ACGTATTGCTTGACGTAAAA+CGG | 0.405511 | tig0014543:-451983 | None:intergenic |
| GCTTGACGTAAAACGGATAG+TGG | 0.418362 | tig0014543:-451976 | None:intergenic |
| GTAAAAGCAAGACGCGTAAA+CGG | 0.427761 | tig0014543:+452027 | Msa1354690:intron |
| TGTGTGGATCCTATTTCAAC+GGG | 0.470768 | tig0014543:-452066 | None:intergenic |
| CGAATTAGTGGATGCTGCCA+AGG | 0.489621 | tig0014543:+452170 | Msa1354690:CDS |
| TTATCTATCGAGCTATGAAA+AGG | 0.512086 | tig0014543:+451929 | Msa1354690:CDS |
| GTATGGCATCGCCATTCCCT+TGG | 0.512820 | tig0014543:-452187 | None:intergenic |
| GAAAAGCACTTGCCATTCGT+TGG | 0.526859 | tig0014543:+452091 | Msa1354690:CDS |
| TAATCGATTAGTTAACATGT+TGG | 0.538486 | tig0014543:+451861 | Msa1354690:CDS |
| GGCGCATCCCGAAAACGTCC+AGG | 0.540732 | tig0014543:+452120 | Msa1354690:CDS |
| AAAGGAAGAGACTCATAGAA+TGG | 0.548096 | tig0014543:+452214 | Msa1354690:CDS |
| TTGTGTGGATCCTATTTCAA+CGG | 0.548545 | tig0014543:-452067 | None:intergenic |
| AGTGGATGCTGCCAAGGGAA+TGG | 0.548588 | tig0014543:+452176 | Msa1354690:CDS |
| TCATGGGTTCTTCTCTCCAT+CGG | 0.567612 | tig0014543:-452727 | None:intergenic |
| TAACGGCGCTGTTGTTCCGA+TGG | 0.571426 | tig0014543:+452711 | Msa1354690:CDS |
| AGAGACTCATAGAATGGCAG+AGG | 0.593635 | tig0014543:+452220 | Msa1354690:CDS |
| TTGAAAGCCATATTTCGACC+TGG | 0.605724 | tig0014543:-452138 | None:intergenic |
| GAATTAGTGGATGCTGCCAA+GGG | 0.619190 | tig0014543:+452171 | Msa1354690:CDS |
| TGCGCCTAATAACCAACGAA+TGG | 0.620213 | tig0014543:-452103 | None:intergenic |
| TCGATTACGATAAATTGGAT+CGG | 0.627987 | tig0014543:-451845 | None:intergenic |
| AAGTTTAGTAATGAGCATAA+CGG | 0.644237 | tig0014543:+452694 | Msa1354690:CDS |
| GTTAACCGTATTATGAAACA+CGG | 0.650772 | tig0014543:+451883 | Msa1354690:CDS |
| TTTACGCTCATGTCACGGCG+AGG | 0.672550 | tig0014543:+451796 | None:intergenic |
| GTTGAAATAGGATCCACACA+AGG | 0.731975 | tig0014543:+452069 | Msa1354690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAGAGGAATATT+TGG | + | tig0014543:452441-452460 | Msa1354690:intron | 15.0% |
| !! | AATAAATAAAGAGGAATATT+TGG | + | tig0014543:452441-452460 | Msa1354690:intron | 15.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | + | tig0014543:452338-452357 | Msa1354690:intron | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | + | tig0014543:452432-452451 | Msa1354690:intron | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | + | tig0014543:452452-452471 | Msa1354690:intron | 20.0% |
| !! | AGAATCAATAGAAAAAGAAT+CGG | + | tig0014543:452338-452357 | Msa1354690:intron | 20.0% |
| !! | TTGCTTAAGAATAAATAAAG+AGG | + | tig0014543:452432-452451 | Msa1354690:intron | 20.0% |
| !!! | AGGAATATTTGGTATTTTTT+TGG | + | tig0014543:452452-452471 | Msa1354690:intron | 20.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | - | tig0014543:451853-451872 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | + | tig0014543:451861-451880 | Msa1354690:CDS | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | - | tig0014543:451891-451910 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | - | tig0014543:452324-452343 | None:intergenic | 25.0% |
| ! | AGAAGAATTAGACCAAAATT+AGG | - | tig0014543:452611-452630 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | + | tig0014543:452694-452713 | Msa1354690:CDS | 25.0% |
| ! | ACTAATCGATTACGATAAAT+TGG | - | tig0014543:451853-451872 | None:intergenic | 25.0% |
| !! | TAATCGATTAGTTAACATGT+TGG | + | tig0014543:451861-451880 | Msa1354690:CDS | 25.0% |
| !! | TTTTTCCGTGTTTCATAATA+CGG | - | tig0014543:451891-451910 | None:intergenic | 25.0% |
| !! | GATTCTTTTCCAATTATGTA+TGG | - | tig0014543:452324-452343 | None:intergenic | 25.0% |
| ! | AGAAGAATTAGACCAAAATT+AGG | - | tig0014543:452611-452630 | None:intergenic | 25.0% |
| ! | AAGTTTAGTAATGAGCATAA+CGG | + | tig0014543:452694-452713 | Msa1354690:CDS | 25.0% |
| ! | ATAAATTGGATCGGATTTTG+CGG | - | tig0014543:451839-451858 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | - | tig0014543:451848-451867 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | + | tig0014543:451883-451902 | Msa1354690:CDS | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | + | tig0014543:451897-451916 | Msa1354690:CDS | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | + | tig0014543:451929-451948 | Msa1354690:CDS | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | - | tig0014543:452019-452038 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | + | tig0014543:452158-452177 | Msa1354690:CDS | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | + | tig0014543:452296-452315 | Msa1354690:intron | 30.0% | |
| TATGGATCCATACATAACAT+AGG | - | tig0014543:452306-452325 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | + | tig0014543:452312-452331 | Msa1354690:intron | 30.0% | |
| GAAAGACGAAATAGAAATGA+TGG | + | tig0014543:452386-452405 | Msa1354690:intron | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | - | tig0014543:452562-452581 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | + | tig0014543:452561-452580 | Msa1354690:intron | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | + | tig0014543:452578-452597 | Msa1354690:intron | 30.0% |
| ACCAAAATTAGGATCAATTC+CGG | - | tig0014543:452600-452619 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | - | tig0014543:452651-452670 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | + | tig0014543:452651-452670 | Msa1354690:CDS | 30.0% | |
| ! | ATAAATTGGATCGGATTTTG+CGG | - | tig0014543:451839-451858 | None:intergenic | 30.0% |
| TCGATTACGATAAATTGGAT+CGG | - | tig0014543:451848-451867 | None:intergenic | 30.0% | |
| GTTAACCGTATTATGAAACA+CGG | + | tig0014543:451883-451902 | Msa1354690:CDS | 30.0% | |
| GAAACACGGAAAAAAATCAT+TGG | + | tig0014543:451897-451916 | Msa1354690:CDS | 30.0% | |
| TTATCTATCGAGCTATGAAA+AGG | + | tig0014543:451929-451948 | Msa1354690:CDS | 30.0% | |
| !! | TCTTGCTTTTACTGCTATAT+CGG | - | tig0014543:452019-452038 | None:intergenic | 30.0% |
| CAAATTAAGTTCCGAATTAG+TGG | + | tig0014543:452158-452177 | Msa1354690:CDS | 30.0% | |
| ACATAGACCTATGTTATGTA+TGG | + | tig0014543:452296-452315 | Msa1354690:intron | 30.0% | |
| TATGGATCCATACATAACAT+AGG | - | tig0014543:452306-452325 | None:intergenic | 30.0% | |
| TGTATGGATCCATACATAAT+TGG | + | tig0014543:452312-452331 | Msa1354690:intron | 30.0% | |
| GAAAGACGAAATAGAAATGA+TGG | + | tig0014543:452386-452405 | Msa1354690:intron | 30.0% | |
| ATCGAAAAGAAGCAAATGAA+AGG | - | tig0014543:452562-452581 | None:intergenic | 30.0% | |
| ! | TTTCATTTGCTTCTTTTCGA+TGG | + | tig0014543:452561-452580 | Msa1354690:intron | 30.0% |
| !!! | CGATGGAAGTTTTATTTTTC+CGG | + | tig0014543:452578-452597 | Msa1354690:intron | 30.0% |
| ACCAAAATTAGGATCAATTC+CGG | - | tig0014543:452600-452619 | None:intergenic | 30.0% | |
| ! | AGATAGATCTTTTTGATCAG+AGG | - | tig0014543:452651-452670 | None:intergenic | 30.0% |
| CTGATCAAAAAGATCTATCT+TGG | + | tig0014543:452651-452670 | Msa1354690:CDS | 30.0% | |
| ACGTATTGCTTGACGTAAAA+CGG | - | tig0014543:451986-452005 | None:intergenic | 35.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | + | tig0014543:451986-452005 | Msa1354690:intron | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | - | tig0014543:452018-452037 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | - | tig0014543:452070-452089 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | + | tig0014543:452214-452233 | Msa1354690:CDS | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | + | tig0014543:452261-452280 | Msa1354690:intron | 35.0% |
| ! | TCCGGAATTGATCCTAATTT+TGG | + | tig0014543:452596-452615 | Msa1354690:CDS | 35.0% |
| ACGTATTGCTTGACGTAAAA+CGG | - | tig0014543:451986-452005 | None:intergenic | 35.0% | |
| ! | TTTTACGTCAAGCAATACGT+GGG | + | tig0014543:451986-452005 | Msa1354690:intron | 35.0% |
| !! | CTTGCTTTTACTGCTATATC+GGG | - | tig0014543:452018-452037 | None:intergenic | 35.0% |
| TTGTGTGGATCCTATTTCAA+CGG | - | tig0014543:452070-452089 | None:intergenic | 35.0% | |
| AAAGGAAGAGACTCATAGAA+TGG | + | tig0014543:452214-452233 | Msa1354690:CDS | 35.0% | |
| ! | ATTTTCGTTAATCCATGAGC+AGG | + | tig0014543:452261-452280 | Msa1354690:intron | 35.0% |
| ! | TCCGGAATTGATCCTAATTT+TGG | + | tig0014543:452596-452615 | Msa1354690:CDS | 35.0% |
| ! | GTTTTACGTCAAGCAATACG+TGG | + | tig0014543:451985-452004 | Msa1354690:intron | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | + | tig0014543:451987-452006 | Msa1354690:intron | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | + | tig0014543:452027-452046 | Msa1354690:intron | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | + | tig0014543:452057-452076 | Msa1354690:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | - | tig0014543:452069-452088 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | + | tig0014543:452069-452088 | Msa1354690:CDS | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | + | tig0014543:452099-452118 | Msa1354690:CDS | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | - | tig0014543:452131-452150 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | + | tig0014543:452131-452150 | Msa1354690:CDS | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | - | tig0014543:452141-452160 | None:intergenic | 40.0% | |
| ! | AGTCTCTTCCTTTTTGCGTA+TGG | - | tig0014543:452207-452226 | None:intergenic | 40.0% |
| GTGTATATAGATCCTGCTCA+TGG | - | tig0014543:452276-452295 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | + | tig0014543:452405-452424 | Msa1354690:intron | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | + | tig0014543:452406-452425 | Msa1354690:intron | 40.0% |
| ! | GTTTTACGTCAAGCAATACG+TGG | + | tig0014543:451985-452004 | Msa1354690:intron | 40.0% |
| TTTACGTCAAGCAATACGTG+GGG | + | tig0014543:451987-452006 | Msa1354690:intron | 40.0% | |
| GTAAAAGCAAGACGCGTAAA+CGG | + | tig0014543:452027-452046 | Msa1354690:intron | 40.0% | |
| CATCAAGTTCCCGTTGAAAT+AGG | + | tig0014543:452057-452076 | Msa1354690:CDS | 40.0% | |
| TGTGTGGATCCTATTTCAAC+GGG | - | tig0014543:452069-452088 | None:intergenic | 40.0% | |
| GTTGAAATAGGATCCACACA+AGG | + | tig0014543:452069-452088 | Msa1354690:CDS | 40.0% | |
| ! | CTTGCCATTCGTTGGTTATT+AGG | + | tig0014543:452099-452118 | Msa1354690:CDS | 40.0% |
| ! | TATTTCGACCTGGACGTTTT+CGG | - | tig0014543:452131-452150 | None:intergenic | 40.0% |
| AAAACGTCCAGGTCGAAATA+TGG | + | tig0014543:452131-452150 | Msa1354690:CDS | 40.0% | |
| TTGAAAGCCATATTTCGACC+TGG | - | tig0014543:452141-452160 | None:intergenic | 40.0% | |
| ! | AGTCTCTTCCTTTTTGCGTA+TGG | - | tig0014543:452207-452226 | None:intergenic | 40.0% |
| GTGTATATAGATCCTGCTCA+TGG | - | tig0014543:452276-452295 | None:intergenic | 40.0% | |
| ! | ATGGCTCAACTAAGCACTTT+TGG | + | tig0014543:452405-452424 | Msa1354690:intron | 40.0% |
| ! | TGGCTCAACTAAGCACTTTT+GGG | + | tig0014543:452406-452425 | Msa1354690:intron | 40.0% |
| GCTTGACGTAAAACGGATAG+TGG | - | tig0014543:451979-451998 | None:intergenic | 45.0% | |
| !! | GAAAAGCACTTGCCATTCGT+TGG | + | tig0014543:452091-452110 | Msa1354690:CDS | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | - | tig0014543:452106-452125 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | - | tig0014543:452130-452149 | None:intergenic | 45.0% |
| CTTGGCAGCATCCACTAATT+CGG | - | tig0014543:452172-452191 | None:intergenic | 45.0% | |
| ! | GAATTAGTGGATGCTGCCAA+GGG | + | tig0014543:452171-452190 | Msa1354690:CDS | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | + | tig0014543:452220-452239 | Msa1354690:CDS | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | + | tig0014543:452407-452426 | Msa1354690:intron | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | - | tig0014543:452730-452749 | None:intergenic | 45.0% | |
| GCTTGACGTAAAACGGATAG+TGG | - | tig0014543:451979-451998 | None:intergenic | 45.0% | |
| !! | GAAAAGCACTTGCCATTCGT+TGG | + | tig0014543:452091-452110 | Msa1354690:CDS | 45.0% |
| TGCGCCTAATAACCAACGAA+TGG | - | tig0014543:452106-452125 | None:intergenic | 45.0% | |
| ! | ATTTCGACCTGGACGTTTTC+GGG | - | tig0014543:452130-452149 | None:intergenic | 45.0% |
| CTTGGCAGCATCCACTAATT+CGG | - | tig0014543:452172-452191 | None:intergenic | 45.0% | |
| ! | GAATTAGTGGATGCTGCCAA+GGG | + | tig0014543:452171-452190 | Msa1354690:CDS | 45.0% |
| AGAGACTCATAGAATGGCAG+AGG | + | tig0014543:452220-452239 | Msa1354690:CDS | 45.0% | |
| ! | GGCTCAACTAAGCACTTTTG+GGG | + | tig0014543:452407-452426 | Msa1354690:intron | 45.0% |
| TCATGGGTTCTTCTCTCCAT+CGG | - | tig0014543:452730-452749 | None:intergenic | 45.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | - | tig0014543:452085-452104 | None:intergenic | 50.0% |
| ! | CGAATTAGTGGATGCTGCCA+AGG | + | tig0014543:452170-452189 | Msa1354690:CDS | 50.0% |
| TGGCGATGCCATACGCAAAA+AGG | + | tig0014543:452196-452215 | Msa1354690:CDS | 50.0% | |
| ! | GGCAAGTGCTTTTCCTTGTG+TGG | - | tig0014543:452085-452104 | None:intergenic | 50.0% |
| ! | CGAATTAGTGGATGCTGCCA+AGG | + | tig0014543:452170-452189 | Msa1354690:CDS | 50.0% |
| TGGCGATGCCATACGCAAAA+AGG | + | tig0014543:452196-452215 | Msa1354690:CDS | 50.0% | |
| AGTGGATGCTGCCAAGGGAA+TGG | + | tig0014543:452176-452195 | Msa1354690:CDS | 55.0% | |
| GTATGGCATCGCCATTCCCT+TGG | - | tig0014543:452190-452209 | None:intergenic | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | + | tig0014543:452711-452730 | Msa1354690:CDS | 55.0% | |
| AGTGGATGCTGCCAAGGGAA+TGG | + | tig0014543:452176-452195 | Msa1354690:CDS | 55.0% | |
| GTATGGCATCGCCATTCCCT+TGG | - | tig0014543:452190-452209 | None:intergenic | 55.0% | |
| TAACGGCGCTGTTGTTCCGA+TGG | + | tig0014543:452711-452730 | Msa1354690:CDS | 55.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | + | tig0014543:452120-452139 | Msa1354690:CDS | 65.0% | |
| GGCGCATCCCGAAAACGTCC+AGG | + | tig0014543:452120-452139 | Msa1354690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 451805 | 452751 | 451805 | ID=Msa1354690;Name=Msa1354690 |
| tig0014543 | mRNA | 451805 | 452751 | 451805 | ID=Msa1354690-mRNA-1;Parent=Msa1354690;Name=Msa1354690-mRNA-1;_AED=0.36;_eAED=0.42;_QI=0|0|0|1|0|0|3|0|201 |
| tig0014543 | exon | 451805 | 452003 | 451805 | ID=Msa1354690-mRNA-1:exon:9202;Parent=Msa1354690-mRNA-1 |
| tig0014543 | exon | 452028 | 452266 | 452028 | ID=Msa1354690-mRNA-1:exon:9203;Parent=Msa1354690-mRNA-1 |
| tig0014543 | exon | 452587 | 452751 | 452587 | ID=Msa1354690-mRNA-1:exon:9204;Parent=Msa1354690-mRNA-1 |
| tig0014543 | CDS | 451805 | 452003 | 451805 | ID=Msa1354690-mRNA-1:cds;Parent=Msa1354690-mRNA-1 |
| tig0014543 | CDS | 452028 | 452266 | 452028 | ID=Msa1354690-mRNA-1:cds;Parent=Msa1354690-mRNA-1 |
| tig0014543 | CDS | 452587 | 452751 | 452587 | ID=Msa1354690-mRNA-1:cds;Parent=Msa1354690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
