AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1391160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391160 MtrunA17_CPg0492421 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1391160 MtrunA17_Chr4g0016101 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1391160 MtrunA17_Chr3g0090841 88.806 134 9 2 144 271 23 156 1.71e-76 231
Msa1391160 MtrunA17_CPg0492431 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1391160 MtrunA17_Chr3g0090851 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1391160 MtrunA17_Chr4g0016091 96.875 64 2 0 273 336 4 67 5.37e-35 129
Msa1391160 MtrunA17_Chr4g0002541 83.333 60 10 0 146 205 1 60 8.38e-28 103
Msa1391160 MtrunA17_Chr4g0057401 87.179 39 5 0 233 271 1 39 6.31e-15 68.2
Msa1391160 MtrunA17_CPg0492401 78.947 38 8 0 52 89 6 43 4.76e-14 65.9
Msa1391160 MtrunA17_Chr7g0234981 82.353 34 6 0 110 143 49 82 7.44e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391160 ATCG00900.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1391160 ATCG01240.1 92.424 132 6 1 144 271 23 154 7.33e-82 245
Msa1391160 ATCG00905.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1391160 ATCG01230.1 91.176 34 3 0 110 143 41 74 4.09e-14 67.4
Msa1391160 ATMG01270.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4
Msa1391160 AT2G07696.1 30.657 137 87 3 144 273 12 147 1.30e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGACCATATAATATTTA+TGG 0.217080 tig0021410:-49093 None:intergenic
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 tig0021410:+51280 Msa1391160:CDS
AGCGGGGATCTTTCACAAAA+AGG 0.310040 tig0021410:+50326 Msa1391160:CDS
AAAACGTCCAGGTCGAAATA+TGG 0.317789 tig0021410:+51354 Msa1391160:CDS
CTCGCCCCACAGCGACAAAA+TGG 0.328779 tig0021410:+49972 Msa1391160:CDS
AGATCCCCGCTTTCGTGCTT+TGG 0.334118 tig0021410:-50314 None:intergenic
CAAATTAAGTTCCGAATTAG+TGG 0.342047 tig0021410:+51381 Msa1391160:CDS
GTTGCATATCGTCATCAAAA+TGG 0.355659 tig0021410:+49156 Msa1391160:CDS
TGGCGATGCCATACGCAAAA+AGG 0.366109 tig0021410:+51420 Msa1391160:CDS
CCTTTACTCCGACAGCATCT+AGG 0.372692 tig0021410:-50906 None:intergenic
AAAAGGATTCCTATTCTAAA+GGG 0.399720 tig0021410:+50343 Msa1391160:CDS
TTTGGCAGCATCCACTAATT+CGG 0.404543 tig0021410:-51392 None:intergenic
ACGTATTGCTTGACGTAAAA+CGG 0.405511 tig0021410:-51206 None:intergenic
CATATTTAGAACGACCTTGT+TGG 0.411865 tig0021410:-50933 None:intergenic
GCTTGACGTAAAACGGATAG+TGG 0.418362 tig0021410:-51199 None:intergenic
TAGGACCATATAATATTTAT+GGG 0.424357 tig0021410:-49092 None:intergenic
GTAAAAGCAAGACGCGTAAA+CGG 0.427761 tig0021410:+51250 Msa1391160:CDS
TATGGCATCGCCATTCCCTT+TGG 0.436234 tig0021410:-51410 None:intergenic
TCCCCGCTTTCGTGCTTTGG+TGG 0.445504 tig0021410:-50311 None:intergenic
GGTTATGCACCCTTTAGAAT+AGG 0.446599 tig0021410:-50352 None:intergenic
CCCCGCTTTCGTGCTTTGGT+GGG 0.449392 tig0021410:-50310 None:intergenic
ACCCACCAAAGCACGAAAGC+GGG 0.461764 tig0021410:+50309 Msa1391160:CDS
CGAATGGATAAGAGGCTTGT+GGG 0.463465 tig0021410:-49132 None:intergenic
GGGTTGACATAAGGTGGTAT+AGG 0.464845 tig0021410:-49111 None:intergenic
TGTGTGGATCCTATTTCAAC+GGG 0.470768 tig0021410:-51289 None:intergenic
AGGCTTGTGGGGTTGACATA+AGG 0.487369 tig0021410:-49120 None:intergenic
TCGCTGTGGGGCGAGGAGAA+AGG 0.489722 tig0021410:-49964 None:intergenic
CTTTACTCCGACAGCATCTA+GGG 0.502834 tig0021410:-50905 None:intergenic
CCTAGATGCTGTCGGAGTAA+AGG 0.506750 tig0021410:+50906 Msa1391160:CDS
TTATCTATCGAGCTATGAAA+AGG 0.512086 tig0021410:+51152 Msa1391160:CDS
TTCATGCGCTTCATATTCGC+CGG 0.514693 tig0021410:+49060 Msa1391160:CDS
ATGCAACGCGAATGGATAAG+AGG 0.519590 tig0021410:-49140 None:intergenic
GACCCACCAAAGCACGAAAG+CGG 0.528018 tig0021410:+50308 Msa1391160:CDS
GTGGATGCTGCCAAAGGGAA+TGG 0.532446 tig0021410:+51400 Msa1391160:CDS
TAATCGATTAGTTAACATGT+TGG 0.538486 tig0021410:+51084 Msa1391160:intron
GGCGCATCCCGAAAACGTCC+AGG 0.540732 tig0021410:+51343 Msa1391160:intron
AAAGGAAGAGACTCATAGAA+TGG 0.548096 tig0021410:+51438 Msa1391160:CDS
TTGTGTGGATCCTATTTCAA+CGG 0.548545 tig0021410:-51290 None:intergenic
ATGACGATATGCAACGCGAA+TGG 0.551071 tig0021410:-49148 None:intergenic
ATCGAAAAGAAGCAAATGAA+AGG 0.561694 tig0021410:-51783 None:intergenic
ATTCTGTAGTCTTAGTAAGA+GGG 0.565369 tig0021410:+50833 Msa1391160:intron
TCATGGGTTCTTCTCTCCAT+CGG 0.567612 tig0021410:-51952 None:intergenic
TAACGGCGCTGTTGTTCCGA+TGG 0.571426 tig0021410:+51936 Msa1391160:CDS
AATTAGTGGATGCTGCCAAA+GGG 0.575951 tig0021410:+51395 Msa1391160:CDS
TCATGCGCTTCATATTCGCC+GGG 0.580793 tig0021410:+49061 Msa1391160:CDS
GAATTAGTGGATGCTGCCAA+AGG 0.584526 tig0021410:+51394 Msa1391160:CDS
GTGAGATATCACATTGTTCG+AGG 0.586809 tig0021410:+50880 Msa1391160:CDS
ACAGCGACAAAATGGAAGAC+TGG 0.588097 tig0021410:+49980 Msa1391160:CDS
TTCTGTAGTCTTAGTAAGAG+GGG 0.592028 tig0021410:+50834 Msa1391160:intron
AGAGACTCATAGAATGGCAG+AGG 0.593635 tig0021410:+51444 Msa1391160:CDS
GGAGTAAAGGATCGCCAACA+AGG 0.599055 tig0021410:+50919 Msa1391160:CDS
GCGAATGGATAAGAGGCTTG+TGG 0.602706 tig0021410:-49133 None:intergenic
TTGAAAGCCATATTTCGACC+TGG 0.605724 tig0021410:-51361 None:intergenic
GGACCATATAATATTTATGG+GGG 0.609209 tig0021410:-49090 None:intergenic
CGAGGAACCCTAGATGCTGT+CGG 0.617344 tig0021410:+50898 Msa1391160:CDS
GCGAGGAGAAAGGCAGCAAG+AGG 0.621301 tig0021410:-49954 None:intergenic
CCCACCAAAGCACGAAAGCG+GGG 0.626295 tig0021410:+50310 Msa1391160:CDS
AGGACCATATAATATTTATG+GGG 0.632114 tig0021410:-49091 None:intergenic
CTTGTGGGGTTGACATAAGG+TGG 0.633450 tig0021410:-49117 None:intergenic
ATTGTACCATCCTAAAAGCA+AGG 0.638231 tig0021410:-49931 None:intergenic
GGAAGGGTTAAGGATTTACC+TGG 0.642987 tig0021410:+50856 Msa1391160:CDS
AAGTTTAGTAATGAGCATAA+CGG 0.644237 tig0021410:+51919 Msa1391160:CDS
GTTAACCGTATTATGAAACA+CGG 0.650772 tig0021410:+51106 Msa1391160:CDS
TCTGTAGTCTTAGTAAGAGG+GGG 0.664205 tig0021410:+50835 Msa1391160:intron
GACCATATAATATTTATGGG+GGG 0.666516 tig0021410:-49089 None:intergenic
GAATGGATAAGAGGCTTGTG+GGG 0.674977 tig0021410:-49131 None:intergenic
ACAATGTGATATCTCACACC+AGG 0.678462 tig0021410:-50874 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.715577 tig0021410:+51210 Msa1391160:CDS
GTTGAAATAGGATCCACACA+AGG 0.731975 tig0021410:+51292 Msa1391160:CDS
GTACCATCCTAAAAGCAAGG+AGG 0.768564 tig0021410:-49928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATAATTTATAAATAG+TGG - tig0021410:49343-49362 None:intergenic 10.0%
!! AATTATAAACAACTTAAATT+CGG + tig0021410:49352-49371 Msa1391160:intron 10.0%
!!! AAAAAAATTTACATTTTTCA+GGG - tig0021410:49718-49737 None:intergenic 10.0%
!!! AAAAAAAATTTACATTTTTC+AGG - tig0021410:49719-49738 None:intergenic 10.0%
!!! AAATGTAAATTTTTTTTCTT+AGG + tig0021410:49722-49741 Msa1391160:intron 10.0%
!! ATTATAAACAACTTAAATTC+GGG + tig0021410:49353-49372 Msa1391160:intron 15.0%
!! CATAGAATAGAAAATATTAA+TGG + tig0021410:50158-50177 Msa1391160:intron 15.0%
!!! CATTTTTTTATAACTTATAG+GGG - tig0021410:50989-51008 None:intergenic 15.0%
!!! CCATTTTTTTATAACTTATA+GGG - tig0021410:50990-51009 None:intergenic 15.0%
!!! TCCATTTTTTTATAACTTAT+AGG - tig0021410:50991-51010 None:intergenic 15.0%
!! AATAAATAAAGAGGAATATT+TGG + tig0021410:51665-51684 Msa1391160:intron 15.0%
!! TAGGACCATATAATATTTAT+GGG - tig0021410:49095-49114 None:intergenic 20.0%
!! ATAGGACCATATAATATTTA+TGG - tig0021410:49096-49115 None:intergenic 20.0%
!!! ATGAAAATAATGGACAAAAT+TGG + tig0021410:49405-49424 Msa1391160:intron 20.0%
!!! TTTTTTTAAGAATACTGAGT+CGG - tig0021410:49555-49574 None:intergenic 20.0%
!! ACTCAGTATTCTTAAAAAAA+TGG + tig0021410:49555-49574 Msa1391160:intron 20.0%
!!! TTAATATACAACATAGGTTT+TGG - tig0021410:49900-49919 None:intergenic 20.0%
!!! AAAAAAGAAAAGTGTTCAAT+TGG + tig0021410:50519-50538 Msa1391160:intron 20.0%
!!! AATTACTTCTCGTTATTTTT+CGG + tig0021410:50564-50583 Msa1391160:intron 20.0%
!! CCCTATAAGTTATAAAAAAA+TGG + tig0021410:50987-51006 Msa1391160:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG + tig0021410:51562-51581 Msa1391160:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG + tig0021410:51656-51675 Msa1391160:intron 20.0%
!!! AGGAATATTTGGTATTTTTT+TGG + tig0021410:51676-51695 Msa1391160:intron 20.0%
! AGGACCATATAATATTTATG+GGG - tig0021410:49094-49113 None:intergenic 25.0%
!!! AGTTTTTTTTTTTCTCGAAG+GGG - tig0021410:49284-49303 None:intergenic 25.0%
!!! CAGTTTTTTTTTTTCTCGAA+GGG - tig0021410:49285-49304 None:intergenic 25.0%
!!! TCAGTTTTTTTTTTTCTCGA+AGG - tig0021410:49286-49305 None:intergenic 25.0%
! TCTTACGCATATGAAAATAA+TGG + tig0021410:49395-49414 Msa1391160:intron 25.0%
!!! ATAATGGACAAAATTGGATT+TGG + tig0021410:49411-49430 Msa1391160:intron 25.0%
! ATCCATAGTTAATCCTATTT+CGG - tig0021410:49460-49479 None:intergenic 25.0%
! AAAATCGTCTTTAGTTAGAT+GGG - tig0021410:49506-49525 None:intergenic 25.0%
!!! TTTTTTAAGAATACTGAGTC+GGG - tig0021410:49554-49573 None:intergenic 25.0%
! AAATGGATAAATCAGAACTA+AGG + tig0021410:49572-49591 Msa1391160:intron 25.0%
!!! CACATAAGAACTTTTAGAAT+GGG - tig0021410:49677-49696 None:intergenic 25.0%
!!! ACACATAAGAACTTTTAGAA+TGG - tig0021410:49678-49697 None:intergenic 25.0%
! TTACAAATTCTGTGTTAATG+GGG - tig0021410:49798-49817 None:intergenic 25.0%
! GTTACAAATTCTGTGTTAAT+GGG - tig0021410:49799-49818 None:intergenic 25.0%
! AGTTACAAATTCTGTGTTAA+TGG - tig0021410:49800-49819 None:intergenic 25.0%
! AACCTATGTTGTATATTAAG+AGG + tig0021410:49901-49920 Msa1391160:intron 25.0%
! AACCTCTTAATATACAACAT+AGG - tig0021410:49906-49925 None:intergenic 25.0%
! TAGTATTTAGTTAGTGATCT+CGG - tig0021410:50043-50062 None:intergenic 25.0%
!! GATAGATATCTTTTCAACAT+AGG + tig0021410:50266-50285 Msa1391160:intron 25.0%
! AAAAAGGATTCCTATTCTAA+AGG + tig0021410:50342-50361 Msa1391160:CDS 25.0%
! AAAAGGATTCCTATTCTAAA+GGG + tig0021410:50343-50362 Msa1391160:CDS 25.0%
!!! ATCCAATTGGGATTTTATTT+AGG + tig0021410:50410-50429 Msa1391160:intron 25.0%
!!! GATTTTATTTAGGAGGTATT+GGG + tig0021410:50420-50439 Msa1391160:intron 25.0%
!! GAAGATTATTCTTTTTCTTC+TGG - tig0021410:50483-50502 None:intergenic 25.0%
!!! ATTACTTCTCGTTATTTTTC+GGG + tig0021410:50565-50584 Msa1391160:intron 25.0%
! TTCAATTCTTTCGAAGTAAT+TGG - tig0021410:50619-50638 None:intergenic 25.0%
! CAGAATGTTCTTGTAAATTA+TGG - tig0021410:50819-50838 None:intergenic 25.0%
!! GGGGCTAAAATAATTTATTT+TGG - tig0021410:50970-50989 None:intergenic 25.0%
! ACTAATCGATTACGATAAAT+TGG - tig0021410:51076-51095 None:intergenic 25.0%
!! TAATCGATTAGTTAACATGT+TGG + tig0021410:51084-51103 Msa1391160:intron 25.0%
!! TTTTTCCGTGTTTCATAATA+CGG - tig0021410:51114-51133 None:intergenic 25.0%
!! GATTCTTTTCCAATTATGTA+TGG - tig0021410:51548-51567 None:intergenic 25.0%
! GAAGAATTAGACCAAAAATT+AGG - tig0021410:51835-51854 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG + tig0021410:51919-51938 Msa1391160:CDS 25.0%
GACCATATAATATTTATGGG+GGG - tig0021410:49092-49111 None:intergenic 30.0%
GGACCATATAATATTTATGG+GGG - tig0021410:49093-49112 None:intergenic 30.0%
TGGAAAAATTCACATTGCAT+TGG + tig0021410:49176-49195 Msa1391160:CDS 30.0%
GGAAAAATTCACATTGCATT+GGG + tig0021410:49177-49196 Msa1391160:CDS 30.0%
TAGTTAATCCTATTTCGGAT+AGG - tig0021410:49455-49474 None:intergenic 30.0%
ATCCGAAATAGGATTAACTA+TGG + tig0021410:49455-49474 Msa1391160:intron 30.0%
AAATCGTCTTTAGTTAGATG+GGG - tig0021410:49505-49524 None:intergenic 30.0%
CAAAATCGTCTTTAGTTAGA+TGG - tig0021410:49507-49526 None:intergenic 30.0%
!!! AAGAACTTTTAGAATGGGAA+TGG - tig0021410:49672-49691 None:intergenic 30.0%
!!! ATTTACATTTTTCAGGGTCT+CGG - tig0021410:49712-49731 None:intergenic 30.0%
TATCACTACAACAAGCATAA+TGG + tig0021410:49766-49785 Msa1391160:intron 30.0%
AGTGAAAAGGATGATTCATT+CGG + tig0021410:49843-49862 Msa1391160:intron 30.0%
! CAATTGGATCTAAAATTGAC+GGG - tig0021410:50399-50418 None:intergenic 30.0%
! CCAATTGGATCTAAAATTGA+CGG - tig0021410:50400-50419 None:intergenic 30.0%
! CGTCAATTTTAGATCCAATT+GGG + tig0021410:50398-50417 Msa1391160:intron 30.0%
CTCCTAAATAAAATCCCAAT+TGG - tig0021410:50415-50434 None:intergenic 30.0%
!! CAATTGGGATTTTATTTAGG+AGG + tig0021410:50413-50432 Msa1391160:intron 30.0%
!! GGATTTTATTTAGGAGGTAT+TGG + tig0021410:50419-50438 Msa1391160:intron 30.0%
TTGTAAATTATGGCCAATAC+CGG - tig0021410:50809-50828 None:intergenic 30.0%
! ATTCTGTAGTCTTAGTAAGA+GGG + tig0021410:50833-50852 Msa1391160:intron 30.0%
! AACAAGGTCGTTCTAAATAT+GGG + tig0021410:50935-50954 Msa1391160:intron 30.0%
! ATAAATTGGATCGGATTTTG+CGG - tig0021410:51062-51081 None:intergenic 30.0%
TCGATTACGATAAATTGGAT+CGG - tig0021410:51071-51090 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+CGG + tig0021410:51106-51125 Msa1391160:CDS 30.0%
GAAACACGGAAAAAAATCAT+TGG + tig0021410:51120-51139 Msa1391160:CDS 30.0%
TTATCTATCGAGCTATGAAA+AGG + tig0021410:51152-51171 Msa1391160:CDS 30.0%
!! TCTTGCTTTTACTGCTATAT+CGG - tig0021410:51242-51261 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG + tig0021410:51381-51400 Msa1391160:CDS 30.0%
ACATAGACCTATGTTATGTA+TGG + tig0021410:51520-51539 Msa1391160:intron 30.0%
TATGGATCCATACATAACAT+AGG - tig0021410:51530-51549 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG + tig0021410:51536-51555 Msa1391160:intron 30.0%
GAAAGACGAAATAGAAATGA+TGG + tig0021410:51610-51629 Msa1391160:intron 30.0%
ATCGAAAAGAAGCAAATGAA+AGG - tig0021410:51786-51805 None:intergenic 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG + tig0021410:51785-51804 Msa1391160:CDS 30.0%
!!! CGATGGAAGTTTTATTTTTC+CGG + tig0021410:51802-51821 Msa1391160:CDS 30.0%
CCAAAAATTAGGATCAATTC+CGG - tig0021410:51824-51843 None:intergenic 30.0%
! AGATAGATCTTTTTGATCAG+AGG - tig0021410:51876-51895 None:intergenic 30.0%
CTGATCAAAAAGATCTATCT+TGG + tig0021410:51876-51895 Msa1391160:CDS 30.0%
TGCCCCCCATAAATATTATA+TGG + tig0021410:49087-49106 Msa1391160:CDS 35.0%
GTTGCATATCGTCATCAAAA+TGG + tig0021410:49156-49175 Msa1391160:CDS 35.0%
ATTCACATTGCATTGGGTTT+AGG + tig0021410:49183-49202 Msa1391160:intron 35.0%
TTCACATTGCATTGGGTTTA+GGG + tig0021410:49184-49203 Msa1391160:intron 35.0%
CTGACTAATCCTAAGTCAAA+AGG + tig0021410:49302-49321 Msa1391160:intron 35.0%
AAGAGTAGAGTGTGAAAAGA+AGG - tig0021410:49379-49398 None:intergenic 35.0%
!!! TTTACATTTTTCAGGGTCTC+GGG - tig0021410:49711-49730 None:intergenic 35.0%
TTGCCTAGTATTCAGTGAAA+AGG + tig0021410:49830-49849 Msa1391160:intron 35.0%
! CATCCTTTTCACTGAATACT+AGG - tig0021410:49836-49855 None:intergenic 35.0%
ATTGTACCATCCTAAAAGCA+AGG - tig0021410:49934-49953 None:intergenic 35.0%
! TCTTTTCTGTATACTCTCTC+TGG + tig0021410:50197-50216 Msa1391160:intron 35.0%
TGTAAAGCGTGTGATAGTAA+CGG - tig0021410:50225-50244 None:intergenic 35.0%
! CCGTCAATTTTAGATCCAAT+TGG + tig0021410:50397-50416 Msa1391160:intron 35.0%
TACTTCGAAAGAATTGAACG+AGG + tig0021410:50621-50640 Msa1391160:intron 35.0%
! CATGAGATTTTCACCTCATA+CGG - tig0021410:50649-50668 None:intergenic 35.0%
TGAGGTGAAAATCTCATGTA+CGG + tig0021410:50651-50670 Msa1391160:intron 35.0%
!!! TGGTTTTTTAGGGGTAATAG+TGG - tig0021410:50719-50738 None:intergenic 35.0%
!!! AGGCAGAGTTTGGTTTTTTA+GGG - tig0021410:50729-50748 None:intergenic 35.0%
!!! AAGGCAGAGTTTGGTTTTTT+AGG - tig0021410:50730-50749 None:intergenic 35.0%
GAAATCACTGCTTATATACC+CGG + tig0021410:50787-50806 Msa1391160:intron 35.0%
TGTAAATTATGGCCAATACC+GGG - tig0021410:50808-50827 None:intergenic 35.0%
! CATTCTGTAGTCTTAGTAAG+AGG + tig0021410:50832-50851 Msa1391160:intron 35.0%
! TTCTGTAGTCTTAGTAAGAG+GGG + tig0021410:50834-50853 Msa1391160:intron 35.0%
! CATATTTAGAACGACCTTGT+TGG - tig0021410:50936-50955 None:intergenic 35.0%
! CAACAAGGTCGTTCTAAATA+TGG + tig0021410:50934-50953 Msa1391160:intron 35.0%
! ACAAGGTCGTTCTAAATATG+GGG + tig0021410:50936-50955 Msa1391160:intron 35.0%
ACGTATTGCTTGACGTAAAA+CGG - tig0021410:51209-51228 None:intergenic 35.0%
! TTTTACGTCAAGCAATACGT+GGG + tig0021410:51209-51228 Msa1391160:CDS 35.0%
!! CTTGCTTTTACTGCTATATC+GGG - tig0021410:51241-51260 None:intergenic 35.0%
TTGTGTGGATCCTATTTCAA+CGG - tig0021410:51293-51312 None:intergenic 35.0%
AAAGGAAGAGACTCATAGAA+TGG + tig0021410:51438-51457 Msa1391160:CDS 35.0%
! ATTTTCGTTAATCCATGAGC+AGG + tig0021410:51485-51504 Msa1391160:intron 35.0%
! CCGGAATTGATCCTAATTTT+TGG + tig0021410:51821-51840 Msa1391160:CDS 35.0%
!!! TTTTTTTCTCGAAGGGGCAA+CGG - tig0021410:49278-49297 None:intergenic 40.0%
!!! GTTTCTCGACCTTTTGACTT+AGG - tig0021410:49314-49333 None:intergenic 40.0%
AGAACTAAGGCAAGATGAGA+TGG + tig0021410:49585-49604 Msa1391160:intron 40.0%
ATCGTTGGCACAAGAAAGAA+GGG - tig0021410:49616-49635 None:intergenic 40.0%
TTCGCAAATGGTAAGATCGT+TGG - tig0021410:49631-49650 None:intergenic 40.0%
CTTACCATTTGCGAAGTAAC+TGG + tig0021410:49636-49655 Msa1391160:intron 40.0%
AACTCCAGTTACTTCGCAAA+TGG - tig0021410:49643-49662 None:intergenic 40.0%
!!! TTACATTTTTCAGGGTCTCG+GGG - tig0021410:49710-49729 None:intergenic 40.0%
TTCACTGAATACTAGGCAAG+AGG - tig0021410:49829-49848 None:intergenic 40.0%
! TTTTGGCAATGCAATGTGGT+TGG - tig0021410:49883-49902 None:intergenic 40.0%
!! TAGGTTTTGGCAATGCAATG+TGG - tig0021410:49887-49906 None:intergenic 40.0%
TTTCTTGCGTGATGAACTGT+TGG - tig0021410:50008-50027 None:intergenic 40.0%
AACAGTTCATCACGCAAGAA+AGG + tig0021410:50007-50026 Msa1391160:intron 40.0%
!! GGTTATGCACCCTTTAGAAT+AGG - tig0021410:50355-50374 None:intergenic 40.0%
TTAGTGTGAGCTTATCCATG+CGG - tig0021410:50376-50395 None:intergenic 40.0%
!!! CTTCTCGTTATTTTTCGGGA+AGG + tig0021410:50569-50588 Msa1391160:intron 40.0%
!!! GGCAGAGTTTGGTTTTTTAG+GGG - tig0021410:50728-50747 None:intergenic 40.0%
ACTTTACGTAAGGCAGAGTT+TGG - tig0021410:50739-50758 None:intergenic 40.0%
TACTCTGGCAACTTTACGTA+AGG - tig0021410:50749-50768 None:intergenic 40.0%
AGCAGTGATTTCAAATCCAG+AGG - tig0021410:50779-50798 None:intergenic 40.0%
ACTGCTTATATACCCGGTAT+TGG + tig0021410:50793-50812 Msa1391160:intron 40.0%
! TCTGTAGTCTTAGTAAGAGG+GGG + tig0021410:50835-50854 Msa1391160:intron 40.0%
ACAATGTGATATCTCACACC+AGG - tig0021410:50877-50896 None:intergenic 40.0%
GTGAGATATCACATTGTTCG+AGG + tig0021410:50880-50899 Msa1391160:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG + tig0021410:51208-51227 Msa1391160:CDS 40.0%
TTTACGTCAAGCAATACGTG+GGG + tig0021410:51210-51229 Msa1391160:CDS 40.0%
GTAAAAGCAAGACGCGTAAA+CGG + tig0021410:51250-51269 Msa1391160:CDS 40.0%
CATCAAGTTCCCGTTGAAAT+AGG + tig0021410:51280-51299 Msa1391160:CDS 40.0%
TGTGTGGATCCTATTTCAAC+GGG - tig0021410:51292-51311 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG + tig0021410:51292-51311 Msa1391160:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG + tig0021410:51322-51341 Msa1391160:intron 40.0%
! TATTTCGACCTGGACGTTTT+CGG - tig0021410:51354-51373 None:intergenic 40.0%
AAAACGTCCAGGTCGAAATA+TGG + tig0021410:51354-51373 Msa1391160:CDS 40.0%
TTGAAAGCCATATTTCGACC+TGG - tig0021410:51364-51383 None:intergenic 40.0%
TTTGGCAGCATCCACTAATT+CGG - tig0021410:51395-51414 None:intergenic 40.0%
! AATTAGTGGATGCTGCCAAA+GGG + tig0021410:51395-51414 Msa1391160:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG - tig0021410:51431-51450 None:intergenic 40.0%
GTGTATATAGATCCTGCTCA+TGG - tig0021410:51500-51519 None:intergenic 40.0%
! ATGGCTCAACTAAGCACTTT+TGG + tig0021410:51629-51648 Msa1391160:intron 40.0%
! TGGCTCAACTAAGCACTTTT+GGG + tig0021410:51630-51649 Msa1391160:intron 40.0%
TTCATGCGCTTCATATTCGC+CGG + tig0021410:49060-49079 Msa1391160:CDS 45.0%
GGGTTGACATAAGGTGGTAT+AGG - tig0021410:49114-49133 None:intergenic 45.0%
GAATGGATAAGAGGCTTGTG+GGG - tig0021410:49134-49153 None:intergenic 45.0%
CGAATGGATAAGAGGCTTGT+GGG - tig0021410:49135-49154 None:intergenic 45.0%
ATGCAACGCGAATGGATAAG+AGG - tig0021410:49143-49162 None:intergenic 45.0%
ATGACGATATGCAACGCGAA+TGG - tig0021410:49151-49170 None:intergenic 45.0%
CAACTGCTCCTATCCGAAAT+AGG + tig0021410:49444-49463 Msa1391160:intron 45.0%
GATCGTTGGCACAAGAAAGA+AGG - tig0021410:49617-49636 None:intergenic 45.0%
!!! TACATTTTTCAGGGTCTCGG+GGG - tig0021410:49709-49728 None:intergenic 45.0%
!! AGGTTGACCTCCTTGCTTTT+AGG + tig0021410:49921-49940 Msa1391160:CDS 45.0%
!! TGACCTCCTTGCTTTTAGGA+TGG + tig0021410:49925-49944 Msa1391160:CDS 45.0%
GTACCATCCTAAAAGCAAGG+AGG - tig0021410:49931-49950 None:intergenic 45.0%
! TCTTCCATTTTGTCGCTGTG+GGG - tig0021410:49979-49998 None:intergenic 45.0%
! GTCTTCCATTTTGTCGCTGT+GGG - tig0021410:49980-49999 None:intergenic 45.0%
! AGTCTTCCATTTTGTCGCTG+TGG - tig0021410:49981-50000 None:intergenic 45.0%
ACAGCGACAAAATGGAAGAC+TGG + tig0021410:49980-49999 Msa1391160:CDS 45.0%
AGCGGGGATCTTTCACAAAA+AGG + tig0021410:50326-50345 Msa1391160:CDS 45.0%
!! AGGAGGTATTGGGAACGAAT+TGG + tig0021410:50430-50449 Msa1391160:intron 45.0%
!!! CGTTATTTTTCGGGAAGGAG+TGG + tig0021410:50574-50593 Msa1391160:intron 45.0%
GAGTGGAGATTATCGAACGA+AGG + tig0021410:50591-50610 Msa1391160:intron 45.0%
TCATGTACGGTTCTGTAGAG+TGG + tig0021410:50664-50683 Msa1391160:intron 45.0%
! TAGTCTTAGTAAGAGGGGGA+AGG + tig0021410:50839-50858 Msa1391160:intron 45.0%
AGTCTTAGTAAGAGGGGGAA+GGG + tig0021410:50840-50859 Msa1391160:intron 45.0%
GGAAGGGTTAAGGATTTACC+TGG + tig0021410:50856-50875 Msa1391160:CDS 45.0%
CTTTACTCCGACAGCATCTA+GGG - tig0021410:50908-50927 None:intergenic 45.0%
! TCCCTTTTACGCTCATGTCA+CGG + tig0021410:51014-51033 Msa1391160:intron 45.0%
GCTTGACGTAAAACGGATAG+TGG - tig0021410:51202-51221 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG + tig0021410:51314-51333 Msa1391160:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG - tig0021410:51329-51348 None:intergenic 45.0%
! ATTTCGACCTGGACGTTTTC+GGG - tig0021410:51353-51372 None:intergenic 45.0%
! GAATTAGTGGATGCTGCCAA+AGG + tig0021410:51394-51413 Msa1391160:CDS 45.0%
AGAGACTCATAGAATGGCAG+AGG + tig0021410:51444-51463 Msa1391160:CDS 45.0%
! GGCTCAACTAAGCACTTTTG+GGG + tig0021410:51631-51650 Msa1391160:intron 45.0%
TCATGGGTTCTTCTCTCCAT+CGG - tig0021410:51955-51974 None:intergenic 45.0%
TCATGCGCTTCATATTCGCC+GGG + tig0021410:49061-49080 Msa1391160:CDS 50.0%
TATTTATGGGGGGCAACTCC+CGG - tig0021410:49082-49101 None:intergenic 50.0%
CTTGTGGGGTTGACATAAGG+TGG - tig0021410:49120-49139 None:intergenic 50.0%
AGGCTTGTGGGGTTGACATA+AGG - tig0021410:49123-49142 None:intergenic 50.0%
GCGAATGGATAAGAGGCTTG+TGG - tig0021410:49136-49155 None:intergenic 50.0%
TGATGACTTCCACCACGTCA+AGG + tig0021410:49223-49242 Msa1391160:intron 50.0%
! ACGGAAGGGGTATAACTCAG+CGG - tig0021410:49259-49278 None:intergenic 50.0%
!!! ACATTTTTCAGGGTCTCGGG+GGG - tig0021410:49708-49727 None:intergenic 50.0%
! CTAAAGGGTGCATAACCGCA+TGG + tig0021410:50358-50377 Msa1391160:intron 50.0%
ATTGAACGAGGAGCCGTATG+AGG + tig0021410:50633-50652 Msa1391160:intron 50.0%
GGTTCTGTAGAGTGGCAGTA+AGG + tig0021410:50672-50691 Msa1391160:intron 50.0%
TCCAGAGGTTAAGCGTACTC+TGG - tig0021410:50764-50783 None:intergenic 50.0%
AGTAAGAGGGGGAAGGGTTA+AGG + tig0021410:50846-50865 Msa1391160:intron 50.0%
CCTTTACTCCGACAGCATCT+AGG - tig0021410:50909-50928 None:intergenic 50.0%
CCTAGATGCTGTCGGAGTAA+AGG + tig0021410:50906-50925 Msa1391160:CDS 50.0%
GGAGTAAAGGATCGCCAACA+AGG + tig0021410:50919-50938 Msa1391160:CDS 50.0%
GCCGTGACATGAGCGTAAAA+GGG - tig0021410:51018-51037 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG - tig0021410:51308-51327 None:intergenic 50.0%
TATGGCATCGCCATTCCCTT+TGG - tig0021410:51413-51432 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG + tig0021410:51420-51439 Msa1391160:CDS 50.0%
! AGAGTGTCACCTTGACGTGG+TGG - tig0021410:49235-49254 None:intergenic 55.0%
! GGTAGAGTGTCACCTTGACG+TGG - tig0021410:49238-49257 None:intergenic 55.0%
TTCTCGAAGGGGCAACGGAA+GGG - tig0021410:49273-49292 None:intergenic 55.0%
TTTCTCGAAGGGGCAACGGA+AGG - tig0021410:49274-49293 None:intergenic 55.0%
!!! ATTTTTCAGGGTCTCGGGGG+GGG - tig0021410:49706-49725 None:intergenic 55.0%
!!! CATTTTTCAGGGTCTCGGGG+GGG - tig0021410:49707-49726 None:intergenic 55.0%
GACCCACCAAAGCACGAAAG+CGG + tig0021410:50308-50327 Msa1391160:CDS 55.0%
ACCCACCAAAGCACGAAAGC+GGG + tig0021410:50309-50328 Msa1391160:CDS 55.0%
AGATCCCCGCTTTCGTGCTT+TGG - tig0021410:50317-50336 None:intergenic 55.0%
GCCAGAGTACGCTTAACCTC+TGG + tig0021410:50760-50779 Msa1391160:intron 55.0%
CGAGGAACCCTAGATGCTGT+CGG + tig0021410:50898-50917 Msa1391160:CDS 55.0%
CGCCGTGACATGAGCGTAAA+AGG - tig0021410:51019-51038 None:intergenic 55.0%
TTTACGCTCATGTCACGGCG+AGG + tig0021410:51019-51038 Msa1391160:intron 55.0%
GTGGATGCTGCCAAAGGGAA+TGG + tig0021410:51400-51419 Msa1391160:CDS 55.0%
TAACGGCGCTGTTGTTCCGA+TGG + tig0021410:51936-51955 Msa1391160:CDS 55.0%
TCTCGAAGGGGCAACGGAAG+GGG - tig0021410:49272-49291 None:intergenic 60.0%
GCGAGGAGAAAGGCAGCAAG+AGG - tig0021410:49957-49976 None:intergenic 60.0%
! CATTTTGTCGCTGTGGGGCG+AGG - tig0021410:49974-49993 None:intergenic 60.0%
CTCGCCCCACAGCGACAAAA+TGG + tig0021410:49972-49991 Msa1391160:CDS 60.0%
CCCCGCTTTCGTGCTTTGGT+GGG - tig0021410:50313-50332 None:intergenic 60.0%
CCCACCAAAGCACGAAAGCG+GGG + tig0021410:50310-50329 Msa1391160:CDS 60.0%
TCCCCGCTTTCGTGCTTTGG+TGG - tig0021410:50314-50333 None:intergenic 60.0%
TCGCTGTGGGGCGAGGAGAA+AGG - tig0021410:49967-49986 None:intergenic 65.0%
GGCGCATCCCGAAAACGTCC+AGG + tig0021410:51343-51362 Msa1391160:intron 65.0%
Chromosome Type Strat End Strand Name
tig0021410 gene 49046 51976 49046 ID=Msa1391160;Name=Msa1391160
tig0021410 mRNA 49046 51976 49046 ID=Msa1391160-mRNA-1;Parent=Msa1391160;Name=Msa1391160-mRNA-1;_AED=0.34;_eAED=0.44;_QI=0|0|0|1|0|0|7|0|336
tig0021410 exon 49046 49198 49046 ID=Msa1391160-mRNA-1:exon:12567;Parent=Msa1391160-mRNA-1
tig0021410 exon 49921 50010 49921 ID=Msa1391160-mRNA-1:exon:12568;Parent=Msa1391160-mRNA-1
tig0021410 exon 50271 50364 50271 ID=Msa1391160-mRNA-1:exon:12569;Parent=Msa1391160-mRNA-1
tig0021410 exon 50848 50940 50848 ID=Msa1391160-mRNA-1:exon:12570;Parent=Msa1391160-mRNA-1
tig0021410 exon 51095 51331 51095 ID=Msa1391160-mRNA-1:exon:12571;Parent=Msa1391160-mRNA-1
tig0021410 exon 51344 51490 51344 ID=Msa1391160-mRNA-1:exon:12572;Parent=Msa1391160-mRNA-1
tig0021410 exon 51783 51976 51783 ID=Msa1391160-mRNA-1:exon:12573;Parent=Msa1391160-mRNA-1
tig0021410 CDS 49046 49198 49046 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 49921 50010 49921 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 50271 50364 50271 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 50848 50940 50848 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 51095 51331 51095 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 51344 51490 51344 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
tig0021410 CDS 51783 51976 51783 ID=Msa1391160-mRNA-1:cds;Parent=Msa1391160-mRNA-1
Gene Sequence

>Msa1391160

ATGAATAACTTGTATTCATGCGCTTCATATTCGCCGGGAGTTGCCCCCCATAAATATTATATGGTCCTATACCACCTTATGTCAACCCCACAAGCCTCTTATCCATTCGCGTTGCATATCGTCATCAAAATGGAAAAATTCACATTGCATTGGAGGTTGACCTCCTTGCTTTTAGGATGGTACAATCCTCTTGCTGCCTTTCTCCTCGCCCCACAGCGACAAAATGGAAGACTGGTGCCAACAATATCTTTTCAACATAGGTCATCGAAAGCATCTCGAAGACCCACCAAAGCACGAAAGCGGGGATCTTTCACAAAAAGGATTCCTATTCTAAAGGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGCCAACAAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCCGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAACGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGCGCATCCCGAAAACGTCCAGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAATGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCCTTTCATTTGCTTCTTTTCGATGGAAGTTTTATTTTTCCGGAATTGATCCTAATTTTTGGTCTAATTCTTCTTCTGATGATTGATTTAACCTCTGATCAAAAAGATCTATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCGCTGTTGTTCCGATGGAGAGAAGAACCCATGATT

Protein sequence

>Msa1391160

MNNLYSCASYSPGVAPHKYYMVLYHLMSTPQASYPFALHIVIKMEKFTLHWRLTSLLLGWYNPLAAFLLAPQRQNGRLVPTISFQHRSSKASRRPTKARKRGSFTKRIPILKVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRGVTPDIAVKARRVNGSTHQVPVEIGSTQGKALAIRASRKRPGRNMAFKLSSELVDAAKGNGDAIRKKEETHRMAEANRAFAHFPFHLLLFDGSFIFPELILIFGLILLLMIDLTSDQKDLSWFYFISSTSLVMSITALLFRWREEPMI