Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911200 | XP_033515266.1 | 97.288 | 295 | 8 | 0 | 1 | 295 | 1 | 295 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911200 | sp|P0CC47|NU2C2_CITSI | 94.237 | 295 | 10 | 1 | 1 | 295 | 124 | 411 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611450 | Msa0911200 | 0.812666 | 3.779862e-51 | -8.615850e-47 |
| Msa0694170 | Msa0911200 | 0.803599 | 3.227748e-49 | -8.615850e-47 |
| Msa0707870 | Msa0911200 | 0.800528 | 1.381788e-48 | -8.615850e-47 |
| Msa0138380 | Msa0911200 | 0.801708 | 7.925573e-49 | -8.615850e-47 |
| Msa0198220 | Msa0911200 | 0.802389 | 5.741538e-49 | -8.615850e-47 |
| Msa0202640 | Msa0911200 | 0.824382 | 8.322263e-54 | -8.615850e-47 |
| Msa0370210 | Msa0911200 | 0.802648 | 5.076779e-49 | -8.615850e-47 |
| Msa0405420 | Msa0911200 | 0.849259 | 3.628017e-60 | -8.615850e-47 |
| Msa0405430 | Msa0911200 | 0.820482 | 6.700057e-53 | -8.615850e-47 |
| Msa0405440 | Msa0911200 | 0.823861 | 1.102972e-53 | -8.615850e-47 |
| Msa0405510 | Msa0911200 | 0.851661 | 7.673548e-61 | -8.615850e-47 |
| Msa0405530 | Msa0911200 | 0.851774 | 7.129860e-61 | -8.615850e-47 |
| Msa0240460 | Msa0911200 | 0.802674 | 5.016068e-49 | -8.615850e-47 |
| Msa0263770 | Msa0911200 | 0.817307 | 3.529567e-52 | -8.615850e-47 |
| Msa0268250 | Msa0911200 | 0.838186 | 3.339056e-57 | -8.615850e-47 |
| Msa0268260 | Msa0911200 | 0.824549 | 7.598471e-54 | -8.615850e-47 |
| Msa0268270 | Msa0911200 | 0.849032 | 4.194104e-60 | -8.615850e-47 |
| Msa0268300 | Msa0911200 | 0.856274 | 3.594261e-62 | -8.615850e-47 |
| Msa0268310 | Msa0911200 | 0.854189 | 1.452462e-61 | -8.615850e-47 |
| Msa0268410 | Msa0911200 | 0.802686 | 4.986731e-49 | -8.615850e-47 |
| Msa0268630 | Msa0911200 | 0.810344 | 1.207741e-50 | -8.615850e-47 |
| Msa0268740 | Msa0911200 | 0.804413 | 2.186534e-49 | -8.615850e-47 |
| Msa0268750 | Msa0911200 | 0.800322 | 1.521561e-48 | -8.615850e-47 |
| Msa0268830 | Msa0911200 | 0.813759 | 2.175924e-51 | -8.615850e-47 |
| Msa0268960 | Msa0911200 | 0.818248 | 2.164249e-52 | -8.615850e-47 |
| Msa0269040 | Msa0911200 | 0.813579 | 2.383500e-51 | -8.615850e-47 |
| Msa0269130 | Msa0911200 | 0.843079 | 1.747111e-58 | -8.615850e-47 |
| Msa0269140 | Msa0911200 | 0.848291 | 6.730516e-60 | -8.615850e-47 |
| Msa0269150 | Msa0911200 | 0.848049 | 7.850401e-60 | -8.615850e-47 |
| Msa0278340 | Msa0911200 | 0.804166 | 2.460766e-49 | -8.615850e-47 |
| Msa0344190 | Msa0911200 | 0.813629 | 2.323391e-51 | -8.615850e-47 |
| Msa0344310 | Msa0911200 | 0.808787 | 2.608478e-50 | -8.615850e-47 |
| Msa0484040 | Msa0911200 | 0.800199 | 1.612398e-48 | -8.615850e-47 |
| Msa0582510 | Msa0911200 | 0.807832 | 4.168137e-50 | -8.615850e-47 |
| Msa0582640 | Msa0911200 | 0.817704 | 2.871727e-52 | -8.615850e-47 |
| Msa0582690 | Msa0911200 | 0.806817 | 6.841549e-50 | -8.615850e-47 |
| Msa0582760 | Msa0911200 | 0.810723 | 1.000459e-50 | -8.615850e-47 |
| Msa0582810 | Msa0911200 | 0.815331 | 9.763972e-52 | -8.615850e-47 |
| Msa0582920 | Msa0911200 | 0.808214 | 3.457525e-50 | -8.615850e-47 |
| Msa0591310 | Msa0911200 | 0.852960 | 3.275448e-61 | -8.615850e-47 |
| Msa0591350 | Msa0911200 | 0.835726 | 1.418747e-56 | -8.615850e-47 |
| Msa0591360 | Msa0911200 | 0.827959 | 1.172870e-54 | -8.615850e-47 |
| Msa0591380 | Msa0911200 | 0.820753 | 5.807333e-53 | -8.615850e-47 |
| Msa0867680 | Msa0911200 | 0.843379 | 1.452831e-58 | -8.615850e-47 |
| Msa0867690 | Msa0911200 | 0.841997 | 3.384311e-58 | -8.615850e-47 |
| Msa0908220 | Msa0911200 | 0.879488 | 1.196173e-69 | -8.615850e-47 |
| Msa0908230 | Msa0911200 | 0.823562 | 1.295732e-53 | -8.615850e-47 |
| Msa0908240 | Msa0911200 | 0.848143 | 7.392962e-60 | -8.615850e-47 |
| Msa0908310 | Msa0911200 | 0.842221 | 2.951464e-58 | -8.615850e-47 |
| Msa0908320 | Msa0911200 | 0.864263 | 1.379027e-64 | -8.615850e-47 |
| Msa0908370 | Msa0911200 | 0.840694 | 7.452678e-58 | -8.615850e-47 |
| Msa0908380 | Msa0911200 | 0.847680 | 9.924412e-60 | -8.615850e-47 |
| Msa0908430 | Msa0911200 | 0.862671 | 4.295404e-64 | -8.615850e-47 |
| Msa0908440 | Msa0911200 | 0.846227 | 2.478794e-59 | -8.615850e-47 |
| Msa0908450 | Msa0911200 | 0.842753 | 2.132765e-58 | -8.615850e-47 |
| Msa0908530 | Msa0911200 | 0.855730 | 5.185825e-62 | -8.615850e-47 |
| Msa0908540 | Msa0911200 | 0.853039 | 3.109462e-61 | -8.615850e-47 |
| Msa0908590 | Msa0911200 | 0.843574 | 1.288623e-58 | -8.615850e-47 |
| Msa0908600 | Msa0911200 | 0.831538 | 1.577056e-55 | -8.615850e-47 |
| Msa0908610 | Msa0911200 | 0.822750 | 2.004204e-53 | -8.615850e-47 |
| Msa0908650 | Msa0911200 | 0.854728 | 1.014601e-61 | -8.615850e-47 |
| Msa0908660 | Msa0911200 | 0.837356 | 5.454727e-57 | -8.615850e-47 |
| Msa0908670 | Msa0911200 | 0.843947 | 1.024001e-58 | -8.615850e-47 |
| Msa0908720 | Msa0911200 | 0.837626 | 4.650518e-57 | -8.615850e-47 |
| Msa0908730 | Msa0911200 | 0.845940 | 2.968373e-59 | -8.615850e-47 |
| Msa0911190 | Msa0911200 | 0.836188 | 1.083363e-56 | -8.615850e-47 |
| Msa0911200 | Msa0911230 | 0.828745 | 7.578730e-55 | -8.615850e-47 |
| Msa0911200 | Msa0924830 | 0.810364 | 1.195911e-50 | -8.615850e-47 |
| Msa0911200 | Msa0924870 | 0.823292 | 1.498333e-53 | -8.615850e-47 |
| Msa0911200 | Msa0924880 | 0.800398 | 1.468704e-48 | -8.615850e-47 |
| Msa0911200 | Msa0924930 | 0.842949 | 1.891754e-58 | -8.615850e-47 |
| Msa0911200 | Msa0924940 | 0.873467 | 1.438037e-67 | -8.615850e-47 |
| Msa0911200 | Msa0925100 | 0.843617 | 1.254939e-58 | -8.615850e-47 |
| Msa0911200 | Msa0925110 | 0.861992 | 6.947660e-64 | -8.615850e-47 |
| Msa0911200 | Msa0931070 | 0.807914 | 4.005111e-50 | -8.615850e-47 |
| Msa0911200 | Msa0931130 | 0.801336 | 9.448493e-49 | -8.615850e-47 |
| Msa0911200 | Msa0931220 | 0.831279 | 1.826244e-55 | -8.615850e-47 |
| Msa0911200 | Msa0931230 | 0.803904 | 2.790044e-49 | -8.615850e-47 |
| Msa0911200 | Msa0931260 | 0.813669 | 2.276630e-51 | -8.615850e-47 |
| Msa0911200 | Msa0983630 | 0.843044 | 1.785100e-58 | -8.615850e-47 |
| Msa0911200 | Msa0983640 | 0.874118 | 8.665848e-68 | -8.615850e-47 |
| Msa0911200 | Msa1022050 | 0.844382 | 7.828032e-59 | -8.615850e-47 |
| Msa0911200 | Msa1022060 | 0.888582 | 5.194284e-73 | -8.615850e-47 |
| Msa0911200 | Msa1064410 | 0.818873 | 1.561750e-52 | -8.615850e-47 |
| Msa0911200 | Msa1086080 | 0.817625 | 2.992626e-52 | -8.615850e-47 |
| Msa0911200 | Msa1086190 | 0.808708 | 2.712056e-50 | -8.615850e-47 |
| Msa0911200 | Msa1086200 | 0.809552 | 1.788255e-50 | -8.615850e-47 |
| Msa0911200 | Msa1086450 | 0.800580 | 1.348172e-48 | -8.615850e-47 |
| Msa0911200 | Msa1086550 | 0.862031 | 6.757465e-64 | -8.615850e-47 |
| Msa0911200 | Msa1086600 | 0.845523 | 3.850511e-59 | -8.615850e-47 |
| Msa0911200 | Msa1086720 | 0.876245 | 1.628037e-68 | -8.615850e-47 |
| Msa0911200 | Msa1086730 | 0.823228 | 1.550582e-53 | -8.615850e-47 |
| Msa0911200 | Msa1086740 | 0.835677 | 1.459952e-56 | -8.615850e-47 |
| Msa0911200 | Msa1086790 | 0.848170 | 7.269757e-60 | -8.615850e-47 |
| Msa0911200 | Msa1086800 | 0.875489 | 2.960275e-68 | -8.615850e-47 |
| Msa0911200 | Msa1086890 | 0.815282 | 1.001158e-51 | -8.615850e-47 |
| Msa0911200 | Msa1086900 | 0.802562 | 5.290502e-49 | -8.615850e-47 |
| Msa0911200 | Msa1086960 | 0.855696 | 5.304782e-62 | -8.615850e-47 |
| Msa0911200 | Msa1086970 | 0.828399 | 9.185802e-55 | -8.615850e-47 |
| Msa0911200 | Msa1087030 | 0.885997 | 5.016206e-72 | -8.615850e-47 |
| Msa0911200 | Msa1087040 | 0.824076 | 9.819309e-54 | -8.615850e-47 |
| Msa0911200 | Msa1087050 | 0.847543 | 1.082280e-59 | -8.615850e-47 |
| Msa0911200 | Msa1087110 | 0.848082 | 7.687395e-60 | -8.615850e-47 |
| Msa0911200 | Msa1087120 | 0.849006 | 4.265600e-60 | -8.615850e-47 |
| Msa0911200 | Msa1143120 | 0.801301 | 9.606612e-49 | -8.615850e-47 |
| Msa0911200 | Msa1143160 | 0.807196 | 5.688470e-50 | -8.615850e-47 |
| Msa0911200 | Msa1305090 | 0.823640 | 1.241996e-53 | -8.615850e-47 |
| Msa0911200 | Msa1354420 | 0.837119 | 6.273978e-57 | -8.615850e-47 |
| Msa0911200 | Msa1354430 | 0.855847 | 4.792903e-62 | -8.615850e-47 |
| Msa0911200 | Msa1354480 | 0.846557 | 2.015632e-59 | -8.615850e-47 |
| Msa0911200 | Msa1354490 | 0.851606 | 7.956935e-61 | -8.615850e-47 |
| Msa0911200 | Msa1354500 | 0.845587 | 3.700108e-59 | -8.615850e-47 |
| Msa0911200 | Msa1354550 | 0.842575 | 2.377922e-58 | -8.615850e-47 |
| Msa0911200 | Msa1354560 | 0.861918 | 7.317188e-64 | -8.615850e-47 |
| Msa0911200 | Msa1354610 | 0.871803 | 5.171909e-67 | -8.615850e-47 |
| Msa0911200 | Msa1354620 | 0.859250 | 4.711313e-63 | -8.615850e-47 |
| Msa0911200 | Msa1354630 | 0.849590 | 2.932372e-60 | -8.615850e-47 |
| Msa0911200 | Msa1354680 | 0.828327 | 9.559432e-55 | -8.615850e-47 |
| Msa0911200 | Msa1354690 | 0.836349 | 9.859516e-57 | -8.615850e-47 |
| Msa0911200 | Msa1354700 | 0.847970 | 8.256453e-60 | -8.615850e-47 |
| Msa0911200 | Msa1354740 | 0.855400 | 6.473465e-62 | -8.615850e-47 |
| Msa0911200 | Msa1354750 | 0.851840 | 6.826340e-61 | -8.615850e-47 |
| Msa0911200 | Msa1354760 | 0.835214 | 1.911578e-56 | -8.615850e-47 |
| Msa0911200 | Msa1354810 | 0.849485 | 3.136875e-60 | -8.615850e-47 |
| Msa0911200 | Msa1354820 | 0.843140 | 1.683020e-58 | -8.615850e-47 |
| Msa0911200 | Msa1354900 | 0.802850 | 4.613878e-49 | -8.615850e-47 |
| Msa0911200 | Msa1354980 | 0.854816 | 9.563540e-62 | -8.615850e-47 |
| Msa0911200 | Msa1354990 | 0.866507 | 2.711114e-65 | -8.615850e-47 |
| Msa0911200 | Msa1355080 | 0.806578 | 7.684803e-50 | -8.615850e-47 |
| Msa0911200 | Msa1365890 | 0.825518 | 4.487929e-54 | -8.615850e-47 |
| Msa0911200 | Msa1365900 | 0.842408 | 2.633119e-58 | -8.615850e-47 |
| Msa0911200 | Msa1365950 | 0.874580 | 6.043236e-68 | -8.615850e-47 |
| Msa0911200 | Msa1365960 | 0.823302 | 1.490241e-53 | -8.615850e-47 |
| Msa0911200 | Msa1365970 | 0.860175 | 2.480405e-63 | -8.615850e-47 |
| Msa0911200 | Msa1366080 | 0.843684 | 1.204540e-58 | -8.615850e-47 |
| Msa0911200 | Msa1366090 | 0.860307 | 2.263325e-63 | -8.615850e-47 |
| Msa0911200 | Msa1368230 | 0.839647 | 1.398307e-57 | -8.615850e-47 |
| Msa0911200 | Msa1368240 | 0.807645 | 4.567325e-50 | -8.615850e-47 |
| Msa0911200 | Msa1380590 | 0.809417 | 1.912201e-50 | -8.615850e-47 |
| Msa0911200 | Msa1380600 | 0.809744 | 1.626300e-50 | -8.615850e-47 |
| Msa0911200 | Msa1385410 | 0.842448 | 2.569929e-58 | -8.615850e-47 |
| Msa0911200 | Msa1385420 | 0.851294 | 9.747090e-61 | -8.615850e-47 |
| Msa0911200 | Msa1391090 | 0.854853 | 9.332686e-62 | -8.615850e-47 |
| Msa0911200 | Msa1391100 | 0.822255 | 2.612326e-53 | -8.615850e-47 |
| Msa0911200 | Msa1391110 | 0.843389 | 1.444102e-58 | -8.615850e-47 |
| Msa0911200 | Msa1391160 | 0.821191 | 4.604805e-53 | -8.615850e-47 |
| Msa0911200 | Msa1391170 | 0.845904 | 3.035215e-59 | -8.615850e-47 |
| Msa0911200 | Msa1391220 | 0.871172 | 8.369905e-67 | -8.615850e-47 |
| Msa0911200 | Msa1391230 | 0.842243 | 2.913120e-58 | -8.615850e-47 |
| Msa0911200 | Msa1391240 | 0.858146 | 1.006505e-62 | -8.615850e-47 |
| Msa0911200 | Msa1394030 | 0.831572 | 1.547287e-55 | -8.615850e-47 |
| Msa0911200 | Msa1394040 | 0.809818 | 1.568131e-50 | -8.615850e-47 |
| Msa0911200 | Msa1394150 | 0.811494 | 6.808946e-51 | -8.615850e-47 |
| Msa0911200 | Msa1394210 | 0.810071 | 1.383061e-50 | -8.615850e-47 |
| Msa0911200 | Msa1394250 | 0.815453 | 9.174881e-52 | -8.615850e-47 |
| Msa0911200 | Msa1460120 | 0.825912 | 3.618070e-54 | -8.615850e-47 |
| Msa0911200 | Msa1460130 | 0.833989 | 3.883764e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911200 | MtrunA17_Chr1g0195541 | 98.485 | 132 | 2 | 0 | 1 | 132 | 1 | 132 | 4.51e-88 | 261 |
| Msa0911200 | MtrunA17_CPg0492431 | 98.485 | 132 | 2 | 0 | 1 | 132 | 106 | 237 | 1.09e-86 | 261 |
| Msa0911200 | MtrunA17_Chr3g0090851 | 98.485 | 132 | 2 | 0 | 1 | 132 | 106 | 237 | 1.09e-86 | 261 |
| Msa0911200 | MtrunA17_Chr4g0016091 | 98.485 | 132 | 2 | 0 | 1 | 132 | 106 | 237 | 1.09e-86 | 261 |
| Msa0911200 | MtrunA17_Chr3g0090871 | 98.095 | 105 | 2 | 0 | 191 | 295 | 1 | 105 | 8.23e-66 | 205 |
| Msa0911200 | MtrunA17_CPg0492451 | 98.095 | 105 | 2 | 0 | 191 | 295 | 1 | 105 | 5.23e-65 | 203 |
| Msa0911200 | MtrunA17_Chr4g0016071 | 98.095 | 105 | 2 | 0 | 191 | 295 | 1 | 105 | 5.23e-65 | 203 |
| Msa0911200 | MtrunA17_Chr1g0153231 | 95.946 | 74 | 3 | 0 | 58 | 131 | 1 | 74 | 2.18e-43 | 144 |
| Msa0911200 | MtrunA17_Chr0c03g0489881 | 34.132 | 167 | 99 | 4 | 129 | 295 | 2 | 157 | 3.02e-17 | 79.0 |
| Msa0911200 | MtrunA17_MTg0491931 | 34.132 | 167 | 99 | 4 | 129 | 295 | 2 | 157 | 3.02e-17 | 79.0 |
| Msa0911200 | MtrunA17_CPg0492181 | 24.749 | 299 | 202 | 8 | 6 | 295 | 147 | 431 | 2.45e-13 | 70.9 |
| Msa0911200 | MtrunA17_Chr4g0000831 | 25.652 | 230 | 153 | 7 | 6 | 231 | 32 | 247 | 1.99e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911200 | ATCG00890.1 | 93.141 | 277 | 12 | 1 | 1 | 277 | 1 | 270 | 6.12e-171 | 479 |
| Msa0911200 | ATCG01250.1 | 93.141 | 277 | 12 | 1 | 1 | 277 | 1 | 270 | 6.12e-171 | 479 |
| Msa0911200 | AT2G07689.1 | 33.929 | 168 | 98 | 5 | 129 | 295 | 2 | 157 | 7.83e-17 | 78.2 |
| Msa0911200 | ATCG01010.1 | 25.676 | 296 | 197 | 8 | 9 | 295 | 130 | 411 | 1.17e-12 | 68.9 |
Find 69 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGATATGTAATTAT+TGG | 0.189063 | 6_2:+17385457 | Msa0911200:CDS |
| CATGGTTTCTCTTGGCTATA+TGG | 0.197078 | 6_2:+17384364 | Msa0911200:CDS |
| TGGGGCAAGCTCTTCTATTC+TGG | 0.197255 | 6_2:+17384339 | Msa0911200:CDS |
| GCTATTCTTAGCATGCTATT+AGG | 0.213688 | 6_2:+17385373 | Msa0911200:CDS |
| TTTGCTTGCATTGTGTTATT+TGG | 0.223841 | 6_2:+17385562 | Msa0911200:CDS |
| ATTAGACCGTACATCTTTCT+TGG | 0.278852 | 6_2:-17384287 | None:intergenic |
| TCCTGAGCAATTTCAATAAT+GGG | 0.279137 | 6_2:-17385964 | None:intergenic |
| ATATTCATCACTGTAGGAAT+TGG | 0.280413 | 6_2:+17384478 | Msa0911200:CDS |
| TCGTTTGATGAGAAATAAAA+AGG | 0.282633 | 6_2:-17385325 | None:intergenic |
| AGCTCTTCTATTCTGGTTCA+TGG | 0.287942 | 6_2:+17384346 | Msa0911200:CDS |
| ATCCTGAGCAATTTCAATAA+TGG | 0.298192 | 6_2:-17385965 | None:intergenic |
| CTATTCTTAGCATGCTATTA+GGG | 0.301257 | 6_2:+17385374 | Msa0911200:CDS |
| TATTCGTCCATAGGTCAAAT+TGG | 0.303171 | 6_2:+17385442 | Msa0911200:CDS |
| TCTTGGCTATATGGTTCGTC+TGG | 0.305943 | 6_2:+17384373 | Msa0911200:CDS |
| GCATACGTTTCATGCTTGTT+TGG | 0.326865 | 6_2:-17385414 | None:intergenic |
| CCCTAGCCCTTTCTCATCAA+TGG | 0.332278 | 6_2:+17384512 | Msa0911200:CDS |
| TTCTGGTTCATGGTTTCTCT+TGG | 0.336946 | 6_2:+17384356 | Msa0911200:CDS |
| TTATGCTCCTATCTACTATC+TGG | 0.367530 | 6_2:+17384259 | Msa0911200:CDS |
| CATACGTTTCATGCTTGTTT+GGG | 0.369828 | 6_2:-17385413 | None:intergenic |
| GTAATTATTGGAATAATTGT+TGG | 0.373428 | 6_2:+17385469 | Msa0911200:CDS |
| ATGGGGTTCATTGATATTCC+TGG | 0.380234 | 6_2:-17385946 | None:intergenic |
| GTGTTATTTGGTCTACGTAC+TGG | 0.413420 | 6_2:+17385574 | Msa0911200:CDS |
| TATTCATCACTGTAGGAATT+GGG | 0.417349 | 6_2:+17384479 | Msa0911200:CDS |
| TACATATCCAATTTGACCTA+TGG | 0.420081 | 6_2:-17385449 | None:intergenic |
| AGAGGTCTTCCTCCACTAGT+AGG | 0.434121 | 6_2:+17385682 | Msa0911200:CDS |
| CTATGTCTATTATCCTTAAG+AGG | 0.443369 | 6_2:+17385664 | Msa0911200:CDS |
| AGCAAAAGTTCCTAGATTCA+TGG | 0.448640 | 6_2:-17385545 | None:intergenic |
| TAGTGGAGGAAGACCTCTTA+AGG | 0.451162 | 6_2:-17385677 | None:intergenic |
| CCCCATTATTGAAATTGCTC+AGG | 0.459148 | 6_2:+17385963 | Msa0911200:CDS |
| TTCTATATCTCCATGAATCT+AGG | 0.460861 | 6_2:+17385535 | Msa0911200:CDS |
| CTTGGCTATATGGTTCGTCT+GGG | 0.471040 | 6_2:+17384374 | Msa0911200:CDS |
| TACTATGAAATATTTACTCA+TGG | 0.474204 | 6_2:+17384315 | Msa0911200:CDS |
| GGTATATCCAGATAGTAGAT+AGG | 0.488329 | 6_2:-17384266 | None:intergenic |
| CAGGAGTCCATTGATGAGAA+AGG | 0.489124 | 6_2:-17384519 | None:intergenic |
| ATAAGCGCAATTGAAATTCC+AGG | 0.496050 | 6_2:-17384457 | None:intergenic |
| TGAAATATTTACTCATGGGT+GGG | 0.506663 | 6_2:+17384320 | Msa0911200:CDS |
| ATGCTTGCTTATTCGTCCAT+AGG | 0.517225 | 6_2:+17385433 | Msa0911200:CDS |
| TCCATTGATGAGAAAGGGCT+AGG | 0.520422 | 6_2:-17384513 | None:intergenic |
| TTTATTTCTCATCAAACGAA+TGG | 0.522523 | 6_2:+17385329 | Msa0911200:CDS |
| AGGAGTCCATTGATGAGAAA+GGG | 0.530418 | 6_2:-17384518 | None:intergenic |
| ACACAAATGTATAACTCCCC+TGG | 0.530663 | 6_2:+17384439 | Msa0911200:CDS |
| GATAACATTCGAGATTATGC+AGG | 0.531827 | 6_2:+17385601 | Msa0911200:CDS |
| ATGAAATATTTACTCATGGG+TGG | 0.533610 | 6_2:+17384319 | Msa0911200:CDS |
| GAAATATTTACTCATGGGTG+GGG | 0.537789 | 6_2:+17384321 | Msa0911200:CDS |
| GAGCTTCAAGAAATAGTGAA+TGG | 0.546870 | 6_2:+17384406 | Msa0911200:CDS |
| ATAATTGTTGGAGACTCAAA+TGG | 0.548093 | 6_2:+17385481 | Msa0911200:CDS |
| AGAAAAGCAACGACTGGAGT+CGG | 0.551106 | 6_2:-17385247 | None:intergenic |
| TTCATATTAACCGCTACTCT+AGG | 0.552712 | 6_2:+17384172 | Msa0911200:CDS |
| CTCTTAAGGATAATAGACAT+AGG | 0.563276 | 6_2:-17385663 | None:intergenic |
| GAAAGATGTACGGTCTAATG+AGG | 0.565206 | 6_2:+17384291 | Msa0911200:CDS |
| TAAGCGCAATTGAAATTCCA+GGG | 0.565360 | 6_2:-17384456 | None:intergenic |
| TGGCTATATGGTTCGTCTGG+GGG | 0.565755 | 6_2:+17384376 | Msa0911200:CDS |
| GGAGAGTCAGAGTCGAAAAG+AGG | 0.572366 | 6_2:-17385226 | None:intergenic |
| ATAGCATGCTAAGAATAGCT+AGG | 0.576533 | 6_2:-17385369 | None:intergenic |
| ACAGAAAGAAAAGCAACGAC+TGG | 0.577795 | 6_2:-17385253 | None:intergenic |
| TTGGCTATATGGTTCGTCTG+GGG | 0.580034 | 6_2:+17384375 | Msa0911200:CDS |
| ACTATGAAATATTTACTCAT+GGG | 0.584827 | 6_2:+17384316 | Msa0911200:CDS |
| TCTTAAGGATAATAGACATA+GGG | 0.585643 | 6_2:-17385662 | None:intergenic |
| GCGCTTATATTCATCACTGT+AGG | 0.594447 | 6_2:+17384472 | Msa0911200:CDS |
| TTGAATGAGAGAAAGAAGTG+AGG | 0.599130 | 6_2:+17385200 | Msa0911200:intron |
| CCTGAGCAATTTCAATAATG+GGG | 0.604713 | 6_2:-17385963 | None:intergenic |
| ATATTAACCGCTACTCTAGG+AGG | 0.609728 | 6_2:+17384175 | Msa0911200:CDS |
| GTGATAGCATCTACTATACC+AGG | 0.610688 | 6_2:+17385928 | Msa0911200:intron |
| GATATACCAAGAAAGATGTA+CGG | 0.625842 | 6_2:+17384281 | Msa0911200:CDS |
| ATTGTTGGAGACTCAAATGG+TGG | 0.626325 | 6_2:+17385484 | Msa0911200:CDS |
| CCATTGATGAGAAAGGGCTA+GGG | 0.627188 | 6_2:-17384512 | None:intergenic |
| AGGAATATCGAAAATTCGAG+TGG | 0.650147 | 6_2:-17385305 | None:intergenic |
| AAACATTCCTCCTAGAGTAG+CGG | 0.663526 | 6_2:-17384182 | None:intergenic |
| AAGCGCAATTGAAATTCCAG+GGG | 0.720091 | 6_2:-17384455 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTTAAAATAACAATTA+AGG | + | chr6_2:17384676-17384695 | Msa0911200:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | + | chr6_2:17384989-17385008 | Msa0911200:intron | 15.0% |
| !! | ATAATTAAGTTATTAATGAC+TGG | + | chr6_2:17385814-17385833 | Msa0911200:intron | 15.0% |
| !!! | ACTTGTTAAAATAACAATTA+AGG | + | chr6_2:17384676-17384695 | Msa0911200:intron | 15.0% |
| !! | TCATAAAGATTGATAAAAAT+AGG | + | chr6_2:17384989-17385008 | Msa0911200:intron | 15.0% |
| !! | ATAATTAAGTTATTAATGAC+TGG | + | chr6_2:17385814-17385833 | Msa0911200:intron | 15.0% |
| !! | TACTATGAAATATTTACTCA+TGG | + | chr6_2:17384315-17384334 | Msa0911200:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | + | chr6_2:17384316-17384335 | Msa0911200:CDS | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | + | chr6_2:17384745-17384764 | Msa0911200:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | - | chr6_2:17385066-17385085 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | + | chr6_2:17385066-17385085 | Msa0911200:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | + | chr6_2:17385457-17385476 | Msa0911200:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | + | chr6_2:17385469-17385488 | Msa0911200:CDS | 20.0% |
| !! | TACTATGAAATATTTACTCA+TGG | + | chr6_2:17384315-17384334 | Msa0911200:CDS | 20.0% |
| !! | ACTATGAAATATTTACTCAT+GGG | + | chr6_2:17384316-17384335 | Msa0911200:CDS | 20.0% |
| !!! | ATTTTCCAAGTTTGTTATTA+CGG | + | chr6_2:17384745-17384764 | Msa0911200:intron | 20.0% |
| !!! | TTCGATTTTTACTTTTCAAA+AGG | - | chr6_2:17385066-17385085 | None:intergenic | 20.0% |
| !! | TTTGAAAAGTAAAAATCGAA+TGG | + | chr6_2:17385066-17385085 | Msa0911200:intron | 20.0% |
| !! | CAAATTGGATATGTAATTAT+TGG | + | chr6_2:17385457-17385476 | Msa0911200:CDS | 20.0% |
| !! | GTAATTATTGGAATAATTGT+TGG | + | chr6_2:17385469-17385488 | Msa0911200:CDS | 20.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | + | chr6_2:17384605-17384624 | Msa0911200:intron | 25.0% |
| ! | TAACAAGTAAAGTTATGTCT+TGG | - | chr6_2:17384664-17384683 | None:intergenic | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | + | chr6_2:17384746-17384765 | Msa0911200:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | - | chr6_2:17384777-17384796 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | - | chr6_2:17384805-17384824 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | + | chr6_2:17385072-17385091 | Msa0911200:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | - | chr6_2:17385141-17385160 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | + | chr6_2:17385145-17385164 | Msa0911200:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | - | chr6_2:17385328-17385347 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | + | chr6_2:17385329-17385348 | Msa0911200:CDS | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | + | chr6_2:17385627-17385646 | Msa0911200:CDS | 25.0% |
| ! | TCTTAAGGATAATAGACATA+GGG | - | chr6_2:17385665-17385684 | None:intergenic | 25.0% |
| ! | CTATTGAAACCAAGAAATAT+AGG | - | chr6_2:17385753-17385772 | None:intergenic | 25.0% |
| ! | CTATATTTCTTGGTTTCAAT+AGG | + | chr6_2:17385751-17385770 | Msa0911200:intron | 25.0% |
| ! | TATAATCATACTCAATTCGA+TGG | - | chr6_2:17385905-17385924 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTCAAAACTCTA+TGG | + | chr6_2:17384605-17384624 | Msa0911200:intron | 25.0% |
| ! | TAACAAGTAAAGTTATGTCT+TGG | - | chr6_2:17384664-17384683 | None:intergenic | 25.0% |
| !!! | TTTTCCAAGTTTGTTATTAC+GGG | + | chr6_2:17384746-17384765 | Msa0911200:intron | 25.0% |
| ! | TCATTAGTATGATACTTTGT+AGG | - | chr6_2:17384777-17384796 | None:intergenic | 25.0% |
| ! | TACATTGAGAATTCAAGTAT+TGG | - | chr6_2:17384805-17384824 | None:intergenic | 25.0% |
| !! | AAGTAAAAATCGAATGGATT+CGG | + | chr6_2:17385072-17385091 | Msa0911200:intron | 25.0% |
| ! | GATAAAAGAAAGAAGAAGAT+TGG | - | chr6_2:17385141-17385160 | None:intergenic | 25.0% |
| !! | TCTTCTTTCTTTTATCACTT+AGG | + | chr6_2:17385145-17385164 | Msa0911200:intron | 25.0% |
| ! | TCGTTTGATGAGAAATAAAA+AGG | - | chr6_2:17385328-17385347 | None:intergenic | 25.0% |
| !! | TTTATTTCTCATCAAACGAA+TGG | + | chr6_2:17385329-17385348 | Msa0911200:CDS | 25.0% |
| !!! | ATACACAAAAGATCCTTTTT+TGG | + | chr6_2:17385627-17385646 | Msa0911200:CDS | 25.0% |
| ! | TCTTAAGGATAATAGACATA+GGG | - | chr6_2:17385665-17385684 | None:intergenic | 25.0% |
| ! | CTATTGAAACCAAGAAATAT+AGG | - | chr6_2:17385753-17385772 | None:intergenic | 25.0% |
| ! | CTATATTTCTTGGTTTCAAT+AGG | + | chr6_2:17385751-17385770 | Msa0911200:intron | 25.0% |
| ! | TATAATCATACTCAATTCGA+TGG | - | chr6_2:17385905-17385924 | None:intergenic | 25.0% |
| GATATACCAAGAAAGATGTA+CGG | + | chr6_2:17384281-17384300 | Msa0911200:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | + | chr6_2:17384319-17384338 | Msa0911200:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | + | chr6_2:17384320-17384339 | Msa0911200:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | + | chr6_2:17384478-17384497 | Msa0911200:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | + | chr6_2:17384479-17384498 | Msa0911200:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | + | chr6_2:17384586-17384605 | Msa0911200:intron | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | - | chr6_2:17384851-17384870 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | + | chr6_2:17384851-17384870 | Msa0911200:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | + | chr6_2:17384951-17384970 | Msa0911200:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | + | chr6_2:17385374-17385393 | Msa0911200:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | - | chr6_2:17385452-17385471 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | + | chr6_2:17385481-17385500 | Msa0911200:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | + | chr6_2:17385535-17385554 | Msa0911200:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | + | chr6_2:17385562-17385581 | Msa0911200:CDS | 30.0% |
| CTCTTAAGGATAATAGACAT+AGG | - | chr6_2:17385666-17385685 | None:intergenic | 30.0% | |
| CTATGTCTATTATCCTTAAG+AGG | + | chr6_2:17385664-17385683 | Msa0911200:CDS | 30.0% | |
| TCGGAAAACTTCATTTATTC+TGG | + | chr6_2:17385710-17385729 | Msa0911200:intron | 30.0% | |
| AAACTTCATTTATTCTGGTG+TGG | + | chr6_2:17385715-17385734 | Msa0911200:intron | 30.0% | |
| ATGGAATTGTTTGATCTTAC+AGG | - | chr6_2:17385886-17385905 | None:intergenic | 30.0% | |
| TCCTGAGCAATTTCAATAAT+GGG | - | chr6_2:17385967-17385986 | None:intergenic | 30.0% | |
| ATCCTGAGCAATTTCAATAA+TGG | - | chr6_2:17385968-17385987 | None:intergenic | 30.0% | |
| GATATACCAAGAAAGATGTA+CGG | + | chr6_2:17384281-17384300 | Msa0911200:CDS | 30.0% | |
| ATGAAATATTTACTCATGGG+TGG | + | chr6_2:17384319-17384338 | Msa0911200:CDS | 30.0% | |
| TGAAATATTTACTCATGGGT+GGG | + | chr6_2:17384320-17384339 | Msa0911200:CDS | 30.0% | |
| ATATTCATCACTGTAGGAAT+TGG | + | chr6_2:17384478-17384497 | Msa0911200:CDS | 30.0% | |
| TATTCATCACTGTAGGAATT+GGG | + | chr6_2:17384479-17384498 | Msa0911200:CDS | 30.0% | |
| !! | CTATCTATTTCTGAGATGTT+TGG | + | chr6_2:17384586-17384605 | Msa0911200:intron | 30.0% |
| ATTATATTCGTAGTCTCTGA+AGG | - | chr6_2:17384851-17384870 | None:intergenic | 30.0% | |
| TCAGAGACTACGAATATAAT+AGG | + | chr6_2:17384851-17384870 | Msa0911200:intron | 30.0% | |
| !!! | TTTCTCCATTTTTTAGACCT+AGG | + | chr6_2:17384951-17384970 | Msa0911200:intron | 30.0% |
| CTATTCTTAGCATGCTATTA+GGG | + | chr6_2:17385374-17385393 | Msa0911200:CDS | 30.0% | |
| TACATATCCAATTTGACCTA+TGG | - | chr6_2:17385452-17385471 | None:intergenic | 30.0% | |
| ATAATTGTTGGAGACTCAAA+TGG | + | chr6_2:17385481-17385500 | Msa0911200:CDS | 30.0% | |
| TTCTATATCTCCATGAATCT+AGG | + | chr6_2:17385535-17385554 | Msa0911200:CDS | 30.0% | |
| ! | TTTGCTTGCATTGTGTTATT+TGG | + | chr6_2:17385562-17385581 | Msa0911200:CDS | 30.0% |
| CTCTTAAGGATAATAGACAT+AGG | - | chr6_2:17385666-17385685 | None:intergenic | 30.0% | |
| CTATGTCTATTATCCTTAAG+AGG | + | chr6_2:17385664-17385683 | Msa0911200:CDS | 30.0% | |
| TCGGAAAACTTCATTTATTC+TGG | + | chr6_2:17385710-17385729 | Msa0911200:intron | 30.0% | |
| AAACTTCATTTATTCTGGTG+TGG | + | chr6_2:17385715-17385734 | Msa0911200:intron | 30.0% | |
| ATGGAATTGTTTGATCTTAC+AGG | - | chr6_2:17385886-17385905 | None:intergenic | 30.0% | |
| TCCTGAGCAATTTCAATAAT+GGG | - | chr6_2:17385967-17385986 | None:intergenic | 30.0% | |
| ATCCTGAGCAATTTCAATAA+TGG | - | chr6_2:17385968-17385987 | None:intergenic | 30.0% | |
| TTCATATTAACCGCTACTCT+AGG | + | chr6_2:17384172-17384191 | Msa0911200:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | + | chr6_2:17384259-17384278 | Msa0911200:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | - | chr6_2:17384269-17384288 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | - | chr6_2:17384290-17384309 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | + | chr6_2:17384321-17384340 | Msa0911200:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | + | chr6_2:17384406-17384425 | Msa0911200:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | - | chr6_2:17384459-17384478 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | - | chr6_2:17384460-17384479 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | - | chr6_2:17384580-17384599 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | - | chr6_2:17384584-17384603 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | + | chr6_2:17384718-17384737 | Msa0911200:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | - | chr6_2:17384728-17384747 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | - | chr6_2:17384753-17384772 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | + | chr6_2:17384818-17384837 | Msa0911200:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | + | chr6_2:17384923-17384942 | Msa0911200:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | - | chr6_2:17384959-17384978 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | + | chr6_2:17384960-17384979 | Msa0911200:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | - | chr6_2:17384979-17384998 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | + | chr6_2:17385200-17385219 | Msa0911200:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | - | chr6_2:17385308-17385327 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | - | chr6_2:17385372-17385391 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | + | chr6_2:17385373-17385392 | Msa0911200:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | - | chr6_2:17385416-17385435 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | + | chr6_2:17385442-17385461 | Msa0911200:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | - | chr6_2:17385548-17385567 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | + | chr6_2:17385601-17385620 | Msa0911200:CDS | 35.0% | |
| TTTCCGAAAAAACCTACTAG+TGG | - | chr6_2:17385697-17385716 | None:intergenic | 35.0% | |
| TTCATTTATTCTGGTGTGGA+TGG | + | chr6_2:17385719-17385738 | Msa0911200:intron | 35.0% | |
| CCTGAGCAATTTCAATAATG+GGG | - | chr6_2:17385966-17385985 | None:intergenic | 35.0% | |
| TTCATATTAACCGCTACTCT+AGG | + | chr6_2:17384172-17384191 | Msa0911200:CDS | 35.0% | |
| TTATGCTCCTATCTACTATC+TGG | + | chr6_2:17384259-17384278 | Msa0911200:CDS | 35.0% | |
| GGTATATCCAGATAGTAGAT+AGG | - | chr6_2:17384269-17384288 | None:intergenic | 35.0% | |
| ATTAGACCGTACATCTTTCT+TGG | - | chr6_2:17384290-17384309 | None:intergenic | 35.0% | |
| GAAATATTTACTCATGGGTG+GGG | + | chr6_2:17384321-17384340 | Msa0911200:CDS | 35.0% | |
| GAGCTTCAAGAAATAGTGAA+TGG | + | chr6_2:17384406-17384425 | Msa0911200:CDS | 35.0% | |
| TAAGCGCAATTGAAATTCCA+GGG | - | chr6_2:17384459-17384478 | None:intergenic | 35.0% | |
| ATAAGCGCAATTGAAATTCC+AGG | - | chr6_2:17384460-17384479 | None:intergenic | 35.0% | |
| TCAGAAATAGATAGAGAGGT+CGG | - | chr6_2:17384580-17384599 | None:intergenic | 35.0% | |
| CATCTCAGAAATAGATAGAG+AGG | - | chr6_2:17384584-17384603 | None:intergenic | 35.0% | |
| ATGAATCCCGGTATGATAAA+CGG | + | chr6_2:17384718-17384737 | Msa0911200:intron | 35.0% | |
| AATGAACCCGTTTATCATAC+CGG | - | chr6_2:17384728-17384747 | None:intergenic | 35.0% | |
| ACTACCCGTAATAACAAACT+TGG | - | chr6_2:17384753-17384772 | None:intergenic | 35.0% | |
| CAATGTAGATGCTACATAGT+TGG | + | chr6_2:17384818-17384837 | Msa0911200:intron | 35.0% | |
| TGAGAACGAATCAAATCAGA+TGG | + | chr6_2:17384923-17384942 | Msa0911200:intron | 35.0% | |
| TGGAACCTAGGTCTAAAAAA+TGG | - | chr6_2:17384959-17384978 | None:intergenic | 35.0% | |
| ! | TTTTTAGACCTAGGTTCCAT+AGG | + | chr6_2:17384960-17384979 | Msa0911200:intron | 35.0% |
| !! | ATCTTTATGACTTGCTCCTA+TGG | - | chr6_2:17384979-17384998 | None:intergenic | 35.0% |
| TTGAATGAGAGAAAGAAGTG+AGG | + | chr6_2:17385200-17385219 | Msa0911200:intron | 35.0% | |
| AGGAATATCGAAAATTCGAG+TGG | - | chr6_2:17385308-17385327 | None:intergenic | 35.0% | |
| ATAGCATGCTAAGAATAGCT+AGG | - | chr6_2:17385372-17385391 | None:intergenic | 35.0% | |
| GCTATTCTTAGCATGCTATT+AGG | + | chr6_2:17385373-17385392 | Msa0911200:CDS | 35.0% | |
| CATACGTTTCATGCTTGTTT+GGG | - | chr6_2:17385416-17385435 | None:intergenic | 35.0% | |
| TATTCGTCCATAGGTCAAAT+TGG | + | chr6_2:17385442-17385461 | Msa0911200:CDS | 35.0% | |
| AGCAAAAGTTCCTAGATTCA+TGG | - | chr6_2:17385548-17385567 | None:intergenic | 35.0% | |
| GATAACATTCGAGATTATGC+AGG | + | chr6_2:17385601-17385620 | Msa0911200:CDS | 35.0% | |
| TTTCCGAAAAAACCTACTAG+TGG | - | chr6_2:17385697-17385716 | None:intergenic | 35.0% | |
| TTCATTTATTCTGGTGTGGA+TGG | + | chr6_2:17385719-17385738 | Msa0911200:intron | 35.0% | |
| CCTGAGCAATTTCAATAATG+GGG | - | chr6_2:17385966-17385985 | None:intergenic | 35.0% | |
| ATATTAACCGCTACTCTAGG+AGG | + | chr6_2:17384175-17384194 | Msa0911200:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | - | chr6_2:17384185-17384204 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | + | chr6_2:17384291-17384310 | Msa0911200:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | + | chr6_2:17384346-17384365 | Msa0911200:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | + | chr6_2:17384356-17384375 | Msa0911200:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | + | chr6_2:17384364-17384383 | Msa0911200:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | + | chr6_2:17384439-17384458 | Msa0911200:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | - | chr6_2:17384458-17384477 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | + | chr6_2:17384472-17384491 | Msa0911200:CDS | 40.0% | |
| AGGAGTCCATTGATGAGAAA+GGG | - | chr6_2:17384521-17384540 | None:intergenic | 40.0% | |
| AATTAAGGTGAAGCAGAGTC+AGG | + | chr6_2:17384691-17384710 | Msa0911200:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | + | chr6_2:17384719-17384738 | Msa0911200:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | - | chr6_2:17384727-17384746 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | - | chr6_2:17384882-17384901 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | - | chr6_2:17384900-17384919 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | - | chr6_2:17384901-17384920 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | + | chr6_2:17385012-17385031 | Msa0911200:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | + | chr6_2:17385031-17385050 | Msa0911200:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | + | chr6_2:17385037-17385056 | Msa0911200:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | - | chr6_2:17385041-17385060 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | - | chr6_2:17385256-17385275 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | - | chr6_2:17385417-17385436 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | + | chr6_2:17385433-17385452 | Msa0911200:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | + | chr6_2:17385484-17385503 | Msa0911200:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | + | chr6_2:17385574-17385593 | Msa0911200:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | - | chr6_2:17385643-17385662 | None:intergenic | 40.0% | |
| !!! | CCTCCACTAGTAGGTTTTTT+CGG | + | chr6_2:17385691-17385710 | Msa0911200:intron | 40.0% |
| CTTCTATAATTTCGCACGTG+AGG | - | chr6_2:17385859-17385878 | None:intergenic | 40.0% | |
| CTCACGTGCGAAATTATAGA+AGG | + | chr6_2:17385857-17385876 | Msa0911200:intron | 40.0% | |
| GTGATAGCATCTACTATACC+AGG | + | chr6_2:17385928-17385947 | Msa0911200:intron | 40.0% | |
| ATGGGGTTCATTGATATTCC+TGG | - | chr6_2:17385949-17385968 | None:intergenic | 40.0% | |
| CCCCATTATTGAAATTGCTC+AGG | + | chr6_2:17385963-17385982 | Msa0911200:CDS | 40.0% | |
| ATATTAACCGCTACTCTAGG+AGG | + | chr6_2:17384175-17384194 | Msa0911200:CDS | 40.0% | |
| AAACATTCCTCCTAGAGTAG+CGG | - | chr6_2:17384185-17384204 | None:intergenic | 40.0% | |
| GAAAGATGTACGGTCTAATG+AGG | + | chr6_2:17384291-17384310 | Msa0911200:CDS | 40.0% | |
| !! | AGCTCTTCTATTCTGGTTCA+TGG | + | chr6_2:17384346-17384365 | Msa0911200:CDS | 40.0% |
| !! | TTCTGGTTCATGGTTTCTCT+TGG | + | chr6_2:17384356-17384375 | Msa0911200:CDS | 40.0% |
| CATGGTTTCTCTTGGCTATA+TGG | + | chr6_2:17384364-17384383 | Msa0911200:CDS | 40.0% | |
| ACACAAATGTATAACTCCCC+TGG | + | chr6_2:17384439-17384458 | Msa0911200:CDS | 40.0% | |
| AAGCGCAATTGAAATTCCAG+GGG | - | chr6_2:17384458-17384477 | None:intergenic | 40.0% | |
| GCGCTTATATTCATCACTGT+AGG | + | chr6_2:17384472-17384491 | Msa0911200:CDS | 40.0% | |
| AGGAGTCCATTGATGAGAAA+GGG | - | chr6_2:17384521-17384540 | None:intergenic | 40.0% | |
| AATTAAGGTGAAGCAGAGTC+AGG | + | chr6_2:17384691-17384710 | Msa0911200:intron | 40.0% | |
| TGAATCCCGGTATGATAAAC+GGG | + | chr6_2:17384719-17384738 | Msa0911200:intron | 40.0% | |
| ATGAACCCGTTTATCATACC+GGG | - | chr6_2:17384727-17384746 | None:intergenic | 40.0% | |
| ! | TAGGGTGATCCTTTTGTTGA+CGG | - | chr6_2:17384882-17384901 | None:intergenic | 40.0% |
| GTCACGAGATGATCATCTTA+GGG | - | chr6_2:17384900-17384919 | None:intergenic | 40.0% | |
| AGTCACGAGATGATCATCTT+AGG | - | chr6_2:17384901-17384920 | None:intergenic | 40.0% | |
| TCATTCACAACCACTGATGA+AGG | + | chr6_2:17385012-17385031 | Msa0911200:intron | 40.0% | |
| AAGGATTCCTCGAAAAGTTC+AGG | + | chr6_2:17385031-17385050 | Msa0911200:intron | 40.0% | |
| TCCTCGAAAAGTTCAGGATT+AGG | + | chr6_2:17385037-17385056 | Msa0911200:intron | 40.0% | |
| ! | TCCTAATCCTGAACTTTTCG+AGG | - | chr6_2:17385041-17385060 | None:intergenic | 40.0% |
| ACAGAAAGAAAAGCAACGAC+TGG | - | chr6_2:17385256-17385275 | None:intergenic | 40.0% | |
| GCATACGTTTCATGCTTGTT+TGG | - | chr6_2:17385417-17385436 | None:intergenic | 40.0% | |
| ATGCTTGCTTATTCGTCCAT+AGG | + | chr6_2:17385433-17385452 | Msa0911200:CDS | 40.0% | |
| ATTGTTGGAGACTCAAATGG+TGG | + | chr6_2:17385484-17385503 | Msa0911200:CDS | 40.0% | |
| !! | GTGTTATTTGGTCTACGTAC+TGG | + | chr6_2:17385574-17385593 | Msa0911200:CDS | 40.0% |
| GCTAAAGAGAGAGCCAAAAA+AGG | - | chr6_2:17385643-17385662 | None:intergenic | 40.0% | |
| !!! | CCTCCACTAGTAGGTTTTTT+CGG | + | chr6_2:17385691-17385710 | Msa0911200:intron | 40.0% |
| CTTCTATAATTTCGCACGTG+AGG | - | chr6_2:17385859-17385878 | None:intergenic | 40.0% | |
| CTCACGTGCGAAATTATAGA+AGG | + | chr6_2:17385857-17385876 | Msa0911200:intron | 40.0% | |
| GTGATAGCATCTACTATACC+AGG | + | chr6_2:17385928-17385947 | Msa0911200:intron | 40.0% | |
| ATGGGGTTCATTGATATTCC+TGG | - | chr6_2:17385949-17385968 | None:intergenic | 40.0% | |
| CCCCATTATTGAAATTGCTC+AGG | + | chr6_2:17385963-17385982 | Msa0911200:CDS | 40.0% | |
| TCTTGGCTATATGGTTCGTC+TGG | + | chr6_2:17384373-17384392 | Msa0911200:CDS | 45.0% | |
| CTTGGCTATATGGTTCGTCT+GGG | + | chr6_2:17384374-17384393 | Msa0911200:CDS | 45.0% | |
| TTGGCTATATGGTTCGTCTG+GGG | + | chr6_2:17384375-17384394 | Msa0911200:CDS | 45.0% | |
| CCATTGATGAGAAAGGGCTA+GGG | - | chr6_2:17384515-17384534 | None:intergenic | 45.0% | |
| TCCATTGATGAGAAAGGGCT+AGG | - | chr6_2:17384516-17384535 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+AGG | - | chr6_2:17384522-17384541 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | + | chr6_2:17384532-17384551 | Msa0911200:intron | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | + | chr6_2:17384539-17384558 | Msa0911200:intron | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | + | chr6_2:17384637-17384656 | Msa0911200:intron | 45.0% | |
| AGTTATGTCTTGGTCCGAGT+GGG | - | chr6_2:17384654-17384673 | None:intergenic | 45.0% | |
| AAGTTATGTCTTGGTCCGAG+TGG | - | chr6_2:17384655-17384674 | None:intergenic | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | + | chr6_2:17384706-17384725 | Msa0911200:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | + | chr6_2:17384870-17384889 | Msa0911200:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | - | chr6_2:17385025-17385044 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | + | chr6_2:17385090-17385109 | Msa0911200:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | + | chr6_2:17385094-17385113 | Msa0911200:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | - | chr6_2:17385173-17385192 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | + | chr6_2:17385175-17385194 | Msa0911200:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | - | chr6_2:17385250-17385269 | None:intergenic | 45.0% | |
| TAGTGGAGGAAGACCTCTTA+AGG | - | chr6_2:17385680-17385699 | None:intergenic | 45.0% | |
| CCGAAAAAACCTACTAGTGG+AGG | - | chr6_2:17385694-17385713 | None:intergenic | 45.0% | |
| GCAAGCAGGCCTATATTTCT+TGG | + | chr6_2:17385741-17385760 | Msa0911200:intron | 45.0% | |
| !! | GCACGTGAGGAGTTATTTCT+TGG | - | chr6_2:17385846-17385865 | None:intergenic | 45.0% |
| TCTTGGCTATATGGTTCGTC+TGG | + | chr6_2:17384373-17384392 | Msa0911200:CDS | 45.0% | |
| CTTGGCTATATGGTTCGTCT+GGG | + | chr6_2:17384374-17384393 | Msa0911200:CDS | 45.0% | |
| TTGGCTATATGGTTCGTCTG+GGG | + | chr6_2:17384375-17384394 | Msa0911200:CDS | 45.0% | |
| CCATTGATGAGAAAGGGCTA+GGG | - | chr6_2:17384515-17384534 | None:intergenic | 45.0% | |
| TCCATTGATGAGAAAGGGCT+AGG | - | chr6_2:17384516-17384535 | None:intergenic | 45.0% | |
| CAGGAGTCCATTGATGAGAA+AGG | - | chr6_2:17384522-17384541 | None:intergenic | 45.0% | |
| TGGACTCCTGACGTATATGA+AGG | + | chr6_2:17384532-17384551 | Msa0911200:intron | 45.0% | |
| CTGACGTATATGAAGGAGTG+CGG | + | chr6_2:17384539-17384558 | Msa0911200:intron | 45.0% | |
| AGAGACATGCTATTCCCACT+CGG | + | chr6_2:17384637-17384656 | Msa0911200:intron | 45.0% | |
| AGTTATGTCTTGGTCCGAGT+GGG | - | chr6_2:17384654-17384673 | None:intergenic | 45.0% | |
| AAGTTATGTCTTGGTCCGAG+TGG | - | chr6_2:17384655-17384674 | None:intergenic | 45.0% | |
| GAGTCAGGAACAATGAATCC+CGG | + | chr6_2:17384706-17384725 | Msa0911200:intron | 45.0% | |
| !! | TAGGAGCATCCGTCAACAAA+AGG | + | chr6_2:17384870-17384889 | Msa0911200:intron | 45.0% |
| TTCGAGGAATCCTTCATCAG+TGG | - | chr6_2:17385025-17385044 | None:intergenic | 45.0% | |
| ! | TTCGGTCTTATACATACGCG+AGG | + | chr6_2:17385090-17385109 | Msa0911200:intron | 45.0% |
| GTCTTATACATACGCGAGGA+AGG | + | chr6_2:17385094-17385113 | Msa0911200:intron | 45.0% | |
| CATGAGACTTTCATCTCGCA+CGG | - | chr6_2:17385173-17385192 | None:intergenic | 45.0% | |
| CGAGATGAAAGTCTCATGCA+CGG | + | chr6_2:17385175-17385194 | Msa0911200:intron | 45.0% | |
| AGAAAAGCAACGACTGGAGT+CGG | - | chr6_2:17385250-17385269 | None:intergenic | 45.0% | |
| TAGTGGAGGAAGACCTCTTA+AGG | - | chr6_2:17385680-17385699 | None:intergenic | 45.0% | |
| CCGAAAAAACCTACTAGTGG+AGG | - | chr6_2:17385694-17385713 | None:intergenic | 45.0% | |
| GCAAGCAGGCCTATATTTCT+TGG | + | chr6_2:17385741-17385760 | Msa0911200:intron | 45.0% | |
| !! | GCACGTGAGGAGTTATTTCT+TGG | - | chr6_2:17385846-17385865 | None:intergenic | 45.0% |
| TGGGGCAAGCTCTTCTATTC+TGG | + | chr6_2:17384339-17384358 | Msa0911200:CDS | 50.0% | |
| TGGCTATATGGTTCGTCTGG+GGG | + | chr6_2:17384376-17384395 | Msa0911200:CDS | 50.0% | |
| CCCTAGCCCTTTCTCATCAA+TGG | + | chr6_2:17384512-17384531 | Msa0911200:CDS | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | - | chr6_2:17384541-17384560 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | - | chr6_2:17384971-17384990 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | - | chr6_2:17385229-17385248 | None:intergenic | 50.0% | |
| AGAGGTCTTCCTCCACTAGT+AGG | + | chr6_2:17385682-17385701 | Msa0911200:CDS | 50.0% | |
| TGGGGCAAGCTCTTCTATTC+TGG | + | chr6_2:17384339-17384358 | Msa0911200:CDS | 50.0% | |
| TGGCTATATGGTTCGTCTGG+GGG | + | chr6_2:17384376-17384395 | Msa0911200:CDS | 50.0% | |
| CCCTAGCCCTTTCTCATCAA+TGG | + | chr6_2:17384512-17384531 | Msa0911200:CDS | 50.0% | |
| CGCACTCCTTCATATACGTC+AGG | - | chr6_2:17384541-17384560 | None:intergenic | 50.0% | |
| ! | GACTTGCTCCTATGGAACCT+AGG | - | chr6_2:17384971-17384990 | None:intergenic | 50.0% |
| GGAGAGTCAGAGTCGAAAAG+AGG | - | chr6_2:17385229-17385248 | None:intergenic | 50.0% | |
| AGAGGTCTTCCTCCACTAGT+AGG | + | chr6_2:17385682-17385701 | Msa0911200:CDS | 50.0% | |
| TTCTGGTGTGGATGGCAAGC+AGG | + | chr6_2:17385727-17385746 | Msa0911200:intron | 55.0% | |
| TTCTGGTGTGGATGGCAAGC+AGG | + | chr6_2:17385727-17385746 | Msa0911200:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 17384148 | 17385999 | 17384148 | ID=Msa0911200;Name=Msa0911200 |
| chr6_2 | mRNA | 17384148 | 17385999 | 17384148 | ID=Msa0911200-mRNA-1;Parent=Msa0911200;Name=Msa0911200-mRNA-1;_AED=0.73;_eAED=0.73;_QI=0|0|0|0.33|1|1|3|0|317 |
| chr6_2 | exon | 17384148 | 17384543 | 17384148 | ID=Msa0911200-mRNA-1:exon:3657;Parent=Msa0911200-mRNA-1 |
| chr6_2 | exon | 17385211 | 17385703 | 17385211 | ID=Msa0911200-mRNA-1:exon:3658;Parent=Msa0911200-mRNA-1 |
| chr6_2 | exon | 17385935 | 17385999 | 17385935 | ID=Msa0911200-mRNA-1:exon:3659;Parent=Msa0911200-mRNA-1 |
| chr6_2 | CDS | 17384148 | 17384543 | 17384148 | ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1 |
| chr6_2 | CDS | 17385211 | 17385703 | 17385211 | ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1 |
| chr6_2 | CDS | 17385935 | 17385999 | 17385935 | ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
