AlfalfaGEDB | Msa0911200

M. sativa cultivar zhongmu-4 / Msa0911200

KEGG: K02992|K05573
GO: -
PFAM: PF00361.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911200	XP_033515266.1	97.288	295	8	0	1	295	1	295	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911200	sp\|P0CC47\|NU2C2_CITSI	94.237	295	10	1	1	295	124	411	0.0	544

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138380	Msa0911200	0.801708	7.925573e-49	-8.615850e-47
Msa0198220	Msa0911200	0.802389	5.741538e-49	-8.615850e-47
Msa0202640	Msa0911200	0.824382	8.322263e-54	-8.615850e-47
Msa0240460	Msa0911200	0.802674	5.016068e-49	-8.615850e-47
Msa0263770	Msa0911200	0.817307	3.529567e-52	-8.615850e-47
Msa0268250	Msa0911200	0.838186	3.339056e-57	-8.615850e-47
Msa0268260	Msa0911200	0.824549	7.598471e-54	-8.615850e-47
Msa0268270	Msa0911200	0.849032	4.194104e-60	-8.615850e-47
Msa0268300	Msa0911200	0.856274	3.594261e-62	-8.615850e-47
Msa0268310	Msa0911200	0.854189	1.452462e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911200	MtrunA17_Chr1g0195541	98.485	132	2	0	1	132	1	132	4.51e-88	261
Msa0911200	MtrunA17_CPg0492431	98.485	132	2	0	1	132	106	237	1.09e-86	261
Msa0911200	MtrunA17_Chr3g0090851	98.485	132	2	0	1	132	106	237	1.09e-86	261
Msa0911200	MtrunA17_Chr4g0016091	98.485	132	2	0	1	132	106	237	1.09e-86	261
Msa0911200	MtrunA17_Chr3g0090871	98.095	105	2	0	191	295	1	105	8.23e-66	205
Msa0911200	MtrunA17_CPg0492451	98.095	105	2	0	191	295	1	105	5.23e-65	203
Msa0911200	MtrunA17_Chr4g0016071	98.095	105	2	0	191	295	1	105	5.23e-65	203
Msa0911200	MtrunA17_Chr1g0153231	95.946	74	3	0	58	131	1	74	2.18e-43	144
Msa0911200	MtrunA17_Chr0c03g0489881	34.132	167	99	4	129	295	2	157	3.02e-17	79.0
Msa0911200	MtrunA17_MTg0491931	34.132	167	99	4	129	295	2	157	3.02e-17	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911200	ATCG00890.1	93.141	277	12	1	1	277	1	270	6.12e-171	479
Msa0911200	ATCG01250.1	93.141	277	12	1	1	277	1	270	6.12e-171	479
Msa0911200	AT2G07689.1	33.929	168	98	5	129	295	2	157	7.83e-17	78.2
Msa0911200	ATCG01010.1	25.676	296	197	8	9	295	130	411	1.17e-12	68.9

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Find 69 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCCTCCTAGAGTAG+CGG	0.663526	6_2:-17384182	None:intergenic
AAGCGCAATTGAAATTCCAG+GGG	0.720091	6_2:-17384455	None:intergenic
ACACAAATGTATAACTCCCC+TGG	0.530663	6_2:+17384439	Msa0911200:CDS
ACAGAAAGAAAAGCAACGAC+TGG	0.577795	6_2:-17385253	None:intergenic
ACTATGAAATATTTACTCAT+GGG	0.584827	6_2:+17384316	Msa0911200:CDS
AGAAAAGCAACGACTGGAGT+CGG	0.551106	6_2:-17385247	None:intergenic
AGAGGTCTTCCTCCACTAGT+AGG	0.434121	6_2:+17385682	Msa0911200:CDS
AGCAAAAGTTCCTAGATTCA+TGG	0.448640	6_2:-17385545	None:intergenic
AGCTCTTCTATTCTGGTTCA+TGG	0.287942	6_2:+17384346	Msa0911200:CDS
AGGAATATCGAAAATTCGAG+TGG	0.650147	6_2:-17385305	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATATACCAAGAAAGATGTA+CGG	+	chr6_2:17384281-17384300	Msa0911200:CDS	30.0%
ATGAAATATTTACTCATGGG+TGG	+	chr6_2:17384319-17384338	Msa0911200:CDS	30.0%
TGAAATATTTACTCATGGGT+GGG	+	chr6_2:17384320-17384339	Msa0911200:CDS	30.0%
ATATTCATCACTGTAGGAAT+TGG	+	chr6_2:17384478-17384497	Msa0911200:CDS	30.0%
TATTCATCACTGTAGGAATT+GGG	+	chr6_2:17384479-17384498	Msa0911200:CDS	30.0%
ATTATATTCGTAGTCTCTGA+AGG	-	chr6_2:17384851-17384870	None:intergenic	30.0%
TCAGAGACTACGAATATAAT+AGG	+	chr6_2:17384851-17384870	Msa0911200:intron	30.0%
CTATTCTTAGCATGCTATTA+GGG	+	chr6_2:17385374-17385393	Msa0911200:CDS	30.0%
TACATATCCAATTTGACCTA+TGG	-	chr6_2:17385452-17385471	None:intergenic	30.0%
ATAATTGTTGGAGACTCAAA+TGG	+	chr6_2:17385481-17385500	Msa0911200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	17384148	17385999	17384148	ID=Msa0911200;Name=Msa0911200
chr6_2	mRNA	17384148	17385999	17384148	ID=Msa0911200-mRNA-1;Parent=Msa0911200;Name=Msa0911200-mRNA-1;_AED=0.73;_eAED=0.73;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|317
chr6_2	exon	17384148	17384543	17384148	ID=Msa0911200-mRNA-1:exon:3657;Parent=Msa0911200-mRNA-1
chr6_2	exon	17385211	17385703	17385211	ID=Msa0911200-mRNA-1:exon:3658;Parent=Msa0911200-mRNA-1
chr6_2	exon	17385935	17385999	17385935	ID=Msa0911200-mRNA-1:exon:3659;Parent=Msa0911200-mRNA-1
chr6_2	CDS	17384148	17384543	17384148	ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1
chr6_2	CDS	17385211	17385703	17385211	ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1
chr6_2	CDS	17385935	17385999	17385935	ID=Msa0911200-mRNA-1:cds;Parent=Msa0911200-mRNA-1

Gene Sequence

>Msa0911200

ATGGCTATAACAGAGTTTCTGTTATTCATATTAACCGCTACTCTAGGAGGAATGTTTTTATGCAGCGCTAATGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTATCTACTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCGTCTGGGGGAGAGATAGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCTGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCTTTCTCATCAATGGACTCCTGACAAAGAAGTGAGGAATCCTCTTTTCGACTCTGACTCTCCGACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTCAGCCACTCGAATTTTCGATATTCCTTTTTATTTCTCATCAAACGAATGGCATCTTCTTCTAGAAATCCTAGCTATTCTTAGCATGCTATTAGGGAATCTTATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCTTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGTTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACTGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTATTATCCTTAAGAGGTCTTCCTCCACTAGTAGCATCTACTATACCAGGAATATCAATGAACCCCATTATTGAAATTGCTCAGGATACCCTTTTTTAG

Protein sequence

>Msa0911200

MAITEFLLFILTATLGGMFLCSANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLALSHQWTPDKEVRNPLFDSDSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMLLGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLRGLPPLVASTIPGISMNPIIEIAQDTLF*