AlfalfaGEDB | Msa1112000

M. sativa cultivar zhongmu-4 / Msa1112000

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF03647.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112000	XP_003623630.2	97.419	310	6	1	1	308	1	310	0.0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112000	sp\|Q9ZVH7\|FAX3_ARATH	46.789	327	138	11	4	303	2	319	2.44e-79	247

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112000	G7KY60	97.419	310	6	1	1	308	1	310	0.0	613

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020630	Msa1112000	0.827447	1.556738e-54	-8.615850e-47
Msa0027540	Msa1112000	0.841485	4.618922e-58	-8.615850e-47
Msa0032120	Msa1112000	0.814757	1.309734e-51	-8.615850e-47
Msa0038350	Msa1112000	-0.836262	1.037490e-56	-8.615850e-47
Msa0044710	Msa1112000	0.837197	5.991379e-57	-8.615850e-47
Msa0046660	Msa1112000	-0.818884	1.552846e-52	-8.615850e-47
Msa0050720	Msa1112000	0.830857	2.318892e-55	-8.615850e-47
Msa0050770	Msa1112000	0.836913	7.080357e-57	-8.615850e-47
Msa0062020	Msa1112000	-0.801347	9.398280e-49	-8.615850e-47
Msa0075310	Msa1112000	0.848927	4.486224e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112000	MtrunA17_Chr7g0244941	97.419	310	6	1	1	308	1	310	0.0	613
Msa1112000	MtrunA17_Chr7g0257051	32.184	174	106	2	127	296	54	219	8.23e-20	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1112000	AT2G38550.1	46.789	327	138	11	4	303	2	319	2.48e-80	247
Msa1112000	AT3G57280.1	28.931	159	102	3	146	296	57	212	5.71e-15	73.2

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Find 107 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGCTTTGAAGCTACAA+GGG	0.592755	7_3:+57759072	Msa1112000:CDS
AACAATGGAATCAATGAAAG+AGG	0.408728	7_3:-57757616	None:intergenic
AAGAATGAAATCAAACAGGT+TGG	0.573943	7_3:-57757579	None:intergenic
AAGACATGATTTGAGTGTTG+TGG	0.608087	7_3:+57759187	Msa1112000:CDS
AAGACTCGTTGCTGATGGTT+AGG	0.426716	7_3:+57763097	Msa1112000:three_prime_UTR
AATCAAACAGGTTGGTTGTT+CGG	0.378634	7_3:-57757571	None:intergenic
AATGCTTCCTGTTATCATAA+AGG	0.390887	7_3:-57760756	None:intergenic
ACAAGCTTTGAAGCTACAAG+GGG	0.644302	7_3:+57759073	Msa1112000:CDS
ACAATGGAATCAATGAAAGA+GGG	0.615187	7_3:-57757615	None:intergenic
ACCTGAGGTGAAGGAAATTG+TGG	0.531778	7_3:+57759265	Msa1112000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGAAATCAAACAGGT+TGG	-	chr7_3:57757582-57757601	None:intergenic	30.0%
AGTGAAGAATGAAATCAAAC+AGG	-	chr7_3:57757586-57757605	None:intergenic	30.0%
ACAATGGAATCAATGAAAGA+GGG	-	chr7_3:57757618-57757637	None:intergenic	30.0%
AACAATGGAATCAATGAAAG+AGG	-	chr7_3:57757619-57757638	None:intergenic	30.0%
TTGAGTAAAGGATGAAACTT+CGG	-	chr7_3:57757779-57757798	None:intergenic	30.0%
CACAGTTGAATTACACAAAA+TGG	-	chr7_3:57758190-57758209	None:intergenic	30.0%
AATTCAACTGTGTGTATGTT+TGG	+	chr7_3:57758198-57758217	Msa1112000:intron	30.0%
AAAAATACTCTCAAATACGG+TGG	-	chr7_3:57758528-57758547	None:intergenic	30.0%
ATACAAAATTCCCCTAACAT+GGG	-	chr7_3:57758680-57758699	None:intergenic	30.0%
AATACAAAATTCCCCTAACA+TGG	-	chr7_3:57758681-57758700	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	57757517	57763466	57757517	ID=Msa1112000;Name=Msa1112000
chr7_3	mRNA	57757517	57763466	57757517	ID=Msa1112000-mRNA-1;Parent=Msa1112000;Name=Msa1112000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181\|1\|1\|1\|0.57\|0.62\|8\|471\|308
chr7_3	exon	57757517	57757904	57757517	ID=Msa1112000-mRNA-1:exon:12561;Parent=Msa1112000-mRNA-1
chr7_3	exon	57758978	57759362	57758978	ID=Msa1112000-mRNA-1:exon:12562;Parent=Msa1112000-mRNA-1
chr7_3	exon	57760726	57760893	57760726	ID=Msa1112000-mRNA-1:exon:12563;Parent=Msa1112000-mRNA-1
chr7_3	exon	57762047	57762093	57762047	ID=Msa1112000-mRNA-1:exon:12564;Parent=Msa1112000-mRNA-1
chr7_3	exon	57762198	57762226	57762198	ID=Msa1112000-mRNA-1:exon:12565;Parent=Msa1112000-mRNA-1
chr7_3	exon	57762738	57762840	57762738	ID=Msa1112000-mRNA-1:exon:12566;Parent=Msa1112000-mRNA-1
chr7_3	exon	57762980	57763062	57762980	ID=Msa1112000-mRNA-1:exon:12567;Parent=Msa1112000-mRNA-1
chr7_3	exon	57763091	57763466	57763091	ID=Msa1112000-mRNA-1:exon:12568;Parent=Msa1112000-mRNA-1
chr7_3	five_prime_UTR	57757517	57757697	57757517	ID=Msa1112000-mRNA-1:five_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57757698	57757904	57757698	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57758978	57759362	57758978	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57760726	57760893	57760726	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57762047	57762093	57762047	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57762198	57762226	57762198	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	CDS	57762738	57762828	57762738	ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3	three_prime_UTR	57762829	57762840	57762829	ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3	three_prime_UTR	57762980	57763062	57762980	ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3	three_prime_UTR	57763091	57763466	57763091	ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1

Gene Sequence

>Msa1112000

ATGGCTTCGATGAGTTTCACCATGGATTCAGTTTCTGTGTTAAACCCTAAACTCAACCACACCCATCTCTCTCATTCTCCGAAGTTTCATCCTTTACTCAAACACCGCAACACCACTTTCAAACTCTCTCTTCCTCGTTATGCCCTCAATCAACGCAGCAAACCGTTAACCCTCGTTTTCGCTGCTGCTACGCCTCAACATGACTCTGATCATGGTGAAGTTGAGGTAGAGAAGGGGAATGATGTTAGTTCTGAGGAGGAATCACAGGAAGCATGGAAGCAGGCTTTGGATACATTCAAGGAACAAGCTTTGAAGCTACAAGGGGTTTCTCAAGAAGCCTATGAAGTGTATTCTAAGAAGGCCATTGTGGTTTTGCAAGATACTTCAGAACAGTTGAAGATACAGGCCGATAAGGCAAGACATGATTTGAGTGTTGTGGCGAAGGAAATCACTGAAGAAGGAAAAGAGTATTTCTCTTCTGCTGCTGAGAATTCACCTGAGGTGAAGGAAATTGTGGAAACTTTTACCTCCCCAGATGATGATCTCAGCAAAGTTTCTGGAGTTCGGGACTTTTATGTTGGTATACCCTATGGTTTGTTACTATCTGCGGGTGGCTTCCTTTCCTTTATGATAACAGGAAGCATTGCAGCAATAAGGTTTGGGGTGATTTTAGGTGGTGTGCTATTGGCTTTAAGCATTTCAAGTCTGAAATCATATAAAAAAGGACAGCCCTCTTCTCTTGCTTTGAAGGGCCAGACAGCTATAGCAGGTATCTTGTTTCTGCGTGAGATCAGCATATTAGGCAGAGGATCAACTTATTTCACTGCTTTGATCAGTGGTGCGGTAGCGGCATTTTATGTCTATAGACTGGTTTTAGAAGGTAAACCACAAAAAGGTTCAAACTTTGAAGGTGAAGCAGGAAACTAG

Protein sequence

>Msa1112000

MASMSFTMDSVSVLNPKLNHTHLSHSPKFHPLLKHRNTTFKLSLPRYALNQRSKPLTLVFAAATPQHDSDHGEVEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYKKGQPSSLALKGQTAIAGILFLREISILGRGSTYFTALISGAVAAFYVYRLVLEGKPQKGSNFEGEAGN*