AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112000 MtrunA17_Chr7g0244941 97.419 310 6 1 1 308 1 310 0.0 613
Msa1112000 MtrunA17_Chr7g0257051 32.184 174 106 2 127 296 54 219 8.23e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112000 AT2G38550.1 46.789 327 138 11 4 303 2 319 2.48e-80 247
Msa1112000 AT3G57280.1 28.931 159 102 3 146 296 57 212 5.71e-15 73.2

Find 107 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAAATTTACTCTCTTA+TGG 0.180959 7_3:-57763295 None:intergenic
GATGGGTGTGGTTGAGTTTA+GGG 0.212767 7_3:-57757742 None:intergenic
GATGATCTCAGCAAAGTTTC+TGG 0.226891 7_3:+57759308 Msa1112000:CDS
AGATGGGTGTGGTTGAGTTT+AGG 0.238483 7_3:-57757743 None:intergenic
CAAATCATGTCTTGCCTTAT+CGG 0.253536 7_3:-57759177 None:intergenic
TTCCTTTCCTTTATGATAAC+AGG 0.269414 7_3:+57760749 Msa1112000:CDS
CGGAAAATGCAGAGGAAGTT+TGG 0.270047 7_3:-57757551 None:intergenic
CTGCGTGAGATCAGCATATT+AGG 0.305459 7_3:+57762067 Msa1112000:CDS
GATGTTTCTCTTACCAAATA+AGG 0.308050 7_3:+57763367 Msa1112000:three_prime_UTR
CAGGAAGCATTGCAGCAATA+AGG 0.309359 7_3:+57760768 Msa1112000:CDS
GGGCGAAGAAAACGAGAGTT+TGG 0.320704 7_3:-57757663 None:intergenic
GCCCTCTTCTCTTGCTTTGA+AGG 0.322787 7_3:+57760862 Msa1112000:CDS
TTGCTGATGGTTAGGATTAG+TGG 0.332050 7_3:+57763105 Msa1112000:three_prime_UTR
GCATTGCAGCAATAAGGTTT+GGG 0.336448 7_3:+57760774 Msa1112000:CDS
TTAGAAGGTAAACCACAAAA+AGG 0.338660 7_3:+57762775 Msa1112000:CDS
GAAACTCATCGAAGCCATTT+AGG 0.344874 7_3:-57757693 None:intergenic
CTTCTTAGAATACACTTCAT+AGG 0.347106 7_3:-57759108 None:intergenic
CAGCAAAGTTTCTGGAGTTC+GGG 0.348326 7_3:+57759316 Msa1112000:CDS
TCAGCAAAGTTTCTGGAGTT+CGG 0.355747 7_3:+57759315 Msa1112000:CDS
GAAAACGAGAGTTTGGGAAT+TGG 0.366535 7_3:-57757656 None:intergenic
AGCATTGCAGCAATAAGGTT+TGG 0.368282 7_3:+57760773 Msa1112000:CDS
AATCAAACAGGTTGGTTGTT+CGG 0.378634 7_3:-57757571 None:intergenic
CGAAGCCATTTAGGTTGAAA+AGG 0.389526 7_3:-57757684 None:intergenic
AATGCTTCCTGTTATCATAA+AGG 0.390887 7_3:-57760756 None:intergenic
CCCTCTTCTCTTGCTTTGAA+GGG 0.393105 7_3:+57760863 Msa1112000:CDS
CTTATTTCACTGCTTTGATC+AGG 0.394428 7_3:+57762205 Msa1112000:CDS
AACAATGGAATCAATGAAAG+AGG 0.408728 7_3:-57757616 None:intergenic
CGGTTTGCTGCGTTGATTGA+GGG 0.408744 7_3:-57757840 None:intergenic
GGAAGCATGGAAGCAGGCTT+TGG 0.413475 7_3:+57759037 Msa1112000:CDS
TTTACATGCTTACTTGAGCC+TGG 0.419544 7_3:+57763318 Msa1112000:three_prime_UTR
TGGTTAGGATTAGTGGTTCA+TGG 0.420233 7_3:+57763112 Msa1112000:three_prime_UTR
CAGAGGAAGTTTGGAATAAT+CGG 0.424723 7_3:-57757542 None:intergenic
AAGACTCGTTGCTGATGGTT+AGG 0.426716 7_3:+57763097 Msa1112000:three_prime_UTR
ACTTTGCTGAGATCATCATC+TGG 0.441046 7_3:-57759302 None:intergenic
TCCACAATTTCCTTCACCTC+AGG 0.451532 7_3:-57759266 None:intergenic
GCAGCGAAAACGAGGGTTAA+CGG 0.453399 7_3:-57757860 None:intergenic
AGCATATGATCTTACCTGTC+TGG 0.456066 7_3:-57760886 None:intergenic
CATTTGCAGTGGTGCGGTAG+CGG 0.456458 7_3:+57762729 Msa1112000:intron
TGCAGGTTTGTTACTATCTG+CGG 0.463565 7_3:+57760721 Msa1112000:intron
GCAGGTTTGTTACTATCTGC+GGG 0.468290 7_3:+57760722 Msa1112000:intron
TTATGTGGGATATTATGAAC+TGG 0.468625 7_3:+57763221 Msa1112000:three_prime_UTR
TCAAACTTTGAAGGTGAAGC+AGG 0.469674 7_3:+57762799 Msa1112000:CDS
GTTGGGCTTGCAGCTATAGC+AGG 0.473435 7_3:+57762034 Msa1112000:intron
GGTGAAGTTGAGGTAGAGAA+GGG 0.479329 7_3:+57758984 Msa1112000:CDS
AGTGAAGAATGAAATCAAAC+AGG 0.484400 7_3:-57757583 None:intergenic
GGTTAGGATTAGTGGTTCAT+GGG 0.488878 7_3:+57763113 Msa1112000:three_prime_UTR
TGGTGAAGTTGAGGTAGAGA+AGG 0.492662 7_3:+57758983 Msa1112000:CDS
GTTGAAGATACAGGCCGATA+AGG 0.495852 7_3:+57759163 Msa1112000:CDS
AGGAAGAGAGAGTTTGAAAG+TGG 0.502707 7_3:-57757810 None:intergenic
GCAGGCTTTGGATACATTCA+AGG 0.503712 7_3:+57759049 Msa1112000:CDS
CTTGCTTTGAAGGGCCAGAC+AGG 0.507466 7_3:+57760872 Msa1112000:CDS
GGCGAAGAAAACGAGAGTTT+GGG 0.510115 7_3:-57757662 None:intergenic
TTCAGAACAGTTGAAGATAC+AGG 0.510496 7_3:+57759154 Msa1112000:CDS
CTATGAAGTGTATTCTAAGA+AGG 0.512585 7_3:+57759109 Msa1112000:CDS
GAAGCCATTTAGGTTGAAAA+GGG 0.513339 7_3:-57757683 None:intergenic
TTACATGCTTACTTGAGCCT+GGG 0.514785 7_3:+57763319 Msa1112000:three_prime_UTR
AGGAAACTAGTTCAGTGATA+AGG 0.517640 7_3:+57762819 Msa1112000:exon
GCGAAGGAAATCACTGAAGA+AGG 0.518243 7_3:+57759209 Msa1112000:CDS
GAACAAGCTTTGAAGCTACA+AGG 0.523582 7_3:+57759071 Msa1112000:CDS
TCGTCAAGACTCGTTGCTGA+TGG 0.524011 7_3:+57763092 Msa1112000:three_prime_UTR
ACGGTTTGCTGCGTTGATTG+AGG 0.525103 7_3:-57757841 None:intergenic
ATCACAGGAAGCATGGAAGC+AGG 0.525285 7_3:+57759031 Msa1112000:CDS
ACCTGAGGTGAAGGAAATTG+TGG 0.531778 7_3:+57759265 Msa1112000:CDS
CCCTTCAAAGCAAGAGAAGA+GGG 0.533399 7_3:-57760863 None:intergenic
CTTTGCTGAGATCATCATCT+GGG 0.538560 7_3:-57759301 None:intergenic
GTTAGTTACTTTACAACCCC+AGG 0.543512 7_3:-57763336 None:intergenic
AGGAGGAATCACAGGAAGCA+TGG 0.543731 7_3:+57759024 Msa1112000:CDS
TGATTTGAGTGTTGTGGCGA+AGG 0.544539 7_3:+57759193 Msa1112000:CDS
CTTCGGAGAATGAGAGAGAT+GGG 0.547043 7_3:-57757759 None:intergenic
TGAGAATTCACCTGAGGTGA+AGG 0.548278 7_3:+57759256 Msa1112000:CDS
TAGGATTAGTGGTTCATGGG+TGG 0.549493 7_3:+57763116 Msa1112000:three_prime_UTR
GTGTTGCGGTGTTTGAGTAA+AGG 0.557167 7_3:-57757788 None:intergenic
ACTTCGGAGAATGAGAGAGA+TGG 0.559423 7_3:-57757760 None:intergenic
TAACACAGAAACTGAATCCA+TGG 0.560337 7_3:-57757717 None:intergenic
TACATGCTTACTTGAGCCTG+GGG 0.561937 7_3:+57763320 Msa1112000:three_prime_UTR
TAGTTCTGAGGAGGAATCAC+AGG 0.564462 7_3:+57759016 Msa1112000:CDS
GCGTAGCAGCAGCGAAAACG+AGG 0.568145 7_3:-57757868 None:intergenic
TTGAGTAAAGGATGAAACTT+CGG 0.573545 7_3:-57757776 None:intergenic
AAGAATGAAATCAAACAGGT+TGG 0.573943 7_3:-57757579 None:intergenic
TTGTGAACTGTATAGGATCA+TGG 0.575738 7_3:+57758963 Msa1112000:intron
GGGGAATGATGTTAGTTCTG+AGG 0.580091 7_3:+57759004 Msa1112000:CDS
AACAAGCTTTGAAGCTACAA+GGG 0.592755 7_3:+57759072 Msa1112000:CDS
CATTGCAGCAATAAGGTTTG+GGG 0.597894 7_3:+57760775 Msa1112000:CDS
GCCCTTCAAAGCAAGAGAAG+AGG 0.598127 7_3:-57760864 None:intergenic
GGACTTACAGAGTCATGTTG+AGG 0.601334 7_3:-57757890 None:intergenic
AAGACATGATTTGAGTGTTG+TGG 0.608087 7_3:+57759187 Msa1112000:CDS
ATAGGATCATGGTGAAGTTG+AGG 0.610635 7_3:+57758974 Msa1112000:intron
AGTGAAGACTGAAGAATGCA+AGG 0.611193 7_3:-57763272 None:intergenic
ACAATGGAATCAATGAAAGA+GGG 0.615187 7_3:-57757615 None:intergenic
AGGAAGTTTGGAATAATCGG+TGG 0.620484 7_3:-57757539 None:intergenic
TTCCTGTTATCATAAAGGAA+AGG 0.622707 7_3:-57760751 None:intergenic
GGCTTCGATGAGTTTCACCA+TGG 0.627621 7_3:+57757700 Msa1112000:CDS
GTGAAGTTGAGGTAGAGAAG+GGG 0.628557 7_3:+57758985 Msa1112000:CDS
GAATGATGTTAGTTCTGAGG+AGG 0.633496 7_3:+57759007 Msa1112000:CDS
ACAAGCTTTGAAGCTACAAG+GGG 0.644302 7_3:+57759073 Msa1112000:CDS
GTATTCTAAGAAGGCCATTG+TGG 0.645713 7_3:+57759118 Msa1112000:CDS
TGCTGCTGAGAATTCACCTG+AGG 0.654229 7_3:+57759250 Msa1112000:CDS
GAGAATGAGAGAGATGGGTG+TGG 0.656406 7_3:-57757754 None:intergenic
GCTGAGATCATCATCTGGGG+AGG 0.657948 7_3:-57759297 None:intergenic
TGGTTGTTCGGAAAATGCAG+AGG 0.658234 7_3:-57757559 None:intergenic
GGTTTGTTACTATCTGCGGG+TGG 0.661424 7_3:+57760725 Msa1112000:intron
GTTTGGCATTTGCAGTGGTG+CGG 0.667652 7_3:+57762723 Msa1112000:intron
AGTATCTTGCAAAACCACAA+TGG 0.670863 7_3:-57759132 None:intergenic
CGTTGATTGAGGGCATAACG+AGG 0.686365 7_3:-57757830 None:intergenic
AGAGTTTGAAAGTGGTGTTG+CGG 0.690634 7_3:-57757802 None:intergenic
TTTGCTGAGATCATCATCTG+GGG 0.696144 7_3:-57759300 None:intergenic
CGTAGCAGCAGCGAAAACGA+GGG 0.710585 7_3:-57757867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTATAAAAATATTGAA+AGG + chr7_3:57758605-57758624 Msa1112000:intron 10.0%
!!! ATGGTTAATAAATTTTAAAT+CGG + chr7_3:57759384-57759403 Msa1112000:intron 10.0%
!!! TTTTTTTCTTAATTCTAAAA+AGG + chr7_3:57760935-57760954 Msa1112000:intron 10.0%
!!! TTTTTTCTTAATTCTAAAAA+GGG + chr7_3:57760936-57760955 Msa1112000:intron 10.0%
!!! ATTTTGGTTTTATATAATAT+TGG + chr7_3:57761767-57761786 Msa1112000:intron 10.0%
!! TTTAGTTGAAAATTGAAATT+TGG - chr7_3:57758007-57758026 None:intergenic 15.0%
!! ATTTATGTTTGAATATATCT+AGG + chr7_3:57758281-57758300 Msa1112000:intron 15.0%
!!! AAAGACAAAAAAATGTTTTA+GGG - chr7_3:57758656-57758675 None:intergenic 15.0%
!!! AAAAGACAAAAAAATGTTTT+AGG - chr7_3:57758657-57758676 None:intergenic 15.0%
!!! TGGTTAATAAATTTTAAATC+GGG + chr7_3:57759385-57759404 Msa1112000:intron 15.0%
!!! GTAATTTTGTAATTTTAGTA+GGG - chr7_3:57761094-57761113 None:intergenic 15.0%
!!! TGTAATTTTGTAATTTTAGT+AGG - chr7_3:57761095-57761114 None:intergenic 15.0%
!! AATCACAATAAACAATTAAT+TGG + chr7_3:57761131-57761150 Msa1112000:intron 15.0%
!!! TATTTATTTTTGAAAAGTAG+TGG + chr7_3:57763247-57763266 Msa1112000:three_prime_UTR 15.0%
!!! ACTTTATTCATTTTCTCAAA+TGG + chr7_3:57757924-57757943 Msa1112000:intron 20.0%
!!! CTTTATTCATTTTCTCAAAT+GGG + chr7_3:57757925-57757944 Msa1112000:intron 20.0%
!!! TTTATTCATTTTCTCAAATG+GGG + chr7_3:57757926-57757945 Msa1112000:intron 20.0%
!! ATAGATTATAGATAGATAGA+TGG + chr7_3:57758044-57758063 Msa1112000:intron 20.0%
!! AAAATTACAAAATGGCTAAA+AGG - chr7_3:57758099-57758118 None:intergenic 20.0%
!! TACATGTGAAAATTACAAAA+TGG - chr7_3:57758107-57758126 None:intergenic 20.0%
!!! TGATTCTATATAATTGATTC+TGG + chr7_3:57758233-57758252 Msa1112000:intron 20.0%
!! GTTTAATTGAAGCTAAAAAT+TGG - chr7_3:57758364-57758383 None:intergenic 20.0%
!! TCAATTAAACTCAATTCTAT+AGG + chr7_3:57758374-57758393 Msa1112000:intron 20.0%
!! ACAAAAAATACTCTCAAATA+CGG - chr7_3:57758531-57758550 None:intergenic 20.0%
!!! AAGACAAAAAAATGTTTTAG+GGG - chr7_3:57758655-57758674 None:intergenic 20.0%
!! TATTATGAAGAAAAACAGAT+TGG + chr7_3:57758697-57758716 Msa1112000:intron 20.0%
!! ATTATGAAGAAAAACAGATT+GGG + chr7_3:57758698-57758717 Msa1112000:intron 20.0%
!! TGAAATAAGACTTGATATTT+AGG + chr7_3:57758847-57758866 Msa1112000:intron 20.0%
!! GAAATAAGACTTGATATTTA+GGG + chr7_3:57758848-57758867 Msa1112000:intron 20.0%
!!! ACATAATTTTGTCTTCTAAA+GGG + chr7_3:57758871-57758890 Msa1112000:intron 20.0%
!!! AATATAGCAAGGTTTTAAAT+TGG + chr7_3:57759468-57759487 Msa1112000:intron 20.0%
!! AGATTATTTATTGATGTTGT+TGG + chr7_3:57759648-57759667 Msa1112000:intron 20.0%
!! TCTCATTAAATGATTTAGTA+AGG + chr7_3:57760581-57760600 Msa1112000:intron 20.0%
!!! AGTCTGAAATCATATAAAAA+AGG + chr7_3:57760836-57760855 Msa1112000:CDS 20.0%
!! AATTGTTTATTGTGATTCAA+AGG - chr7_3:57761128-57761147 None:intergenic 20.0%
!! AACAATTAATTGGACTTAAT+AGG + chr7_3:57761141-57761160 Msa1112000:intron 20.0%
!!! TATTTTCTCTATTTAGAGTT+GGG - chr7_3:57761194-57761213 None:intergenic 20.0%
!!! ATATTTTCTCTATTTAGAGT+TGG - chr7_3:57761195-57761214 None:intergenic 20.0%
!! CTAAATAGAGAAAATATAAG+TGG + chr7_3:57761198-57761217 Msa1112000:intron 20.0%
!! ACAATTAAACCAATGATAAT+TGG - chr7_3:57761512-57761531 None:intergenic 20.0%
!!! CATTTATTTTATGCCAATAA+GGG + chr7_3:57761563-57761582 Msa1112000:intron 20.0%
!!! ATTTATTTTATGCCAATAAG+GGG + chr7_3:57761564-57761583 Msa1112000:intron 20.0%
!! TTCAAAAAATCATTGTTTCA+TGG + chr7_3:57761593-57761612 Msa1112000:intron 20.0%
!! TAAAAGAAATCGTAAAAGTA+TGG + chr7_3:57761679-57761698 Msa1112000:intron 20.0%
!!! AAAAGAAATCGTAAAAGTAT+GGG + chr7_3:57761680-57761699 Msa1112000:intron 20.0%
!!! TATTTTAGGGTTTGAAATTT+TGG + chr7_3:57761751-57761770 Msa1112000:intron 20.0%
!! GTGATCAAATATATTAGAAT+TGG + chr7_3:57761849-57761868 Msa1112000:intron 20.0%
!!! TCAACTATTTTGTAATTGAT+TGG + chr7_3:57761944-57761963 Msa1112000:intron 20.0%
!! TAATGAATTAGTGTTACAAA+CGG + chr7_3:57762439-57762458 Msa1112000:intron 20.0%
!!! TTTTGTTGTATAACTTTGTT+TGG + chr7_3:57762706-57762725 Msa1112000:intron 20.0%
!! ATGATATCAATAAACTGAAT+AGG - chr7_3:57762849-57762868 None:intergenic 20.0%
!! ATGTTTAACTGAACTTTATT+GGG - chr7_3:57762883-57762902 None:intergenic 20.0%
!! TATGTTTAACTGAACTTTAT+TGG - chr7_3:57762884-57762903 None:intergenic 20.0%
! TCAAAGTAAGAGAAAAACAA+TGG - chr7_3:57757634-57757653 None:intergenic 25.0%
!! TGAATAAAGTTAGATCCTTT+TGG - chr7_3:57757914-57757933 None:intergenic 25.0%
! TGCATTGAATTTGACAAAAA+TGG - chr7_3:57757957-57757976 None:intergenic 25.0%
!!! TTCACCTCTAAAATCAATTT+TGG + chr7_3:57758409-57758428 Msa1112000:intron 25.0%
! TTATGAAGAAAAACAGATTG+GGG + chr7_3:57758699-57758718 Msa1112000:intron 25.0%
!! GACATAATTTTGTCTTCTAA+AGG + chr7_3:57758870-57758889 Msa1112000:intron 25.0%
!! TTCTAAAGGGACTTATAATT+AGG + chr7_3:57758884-57758903 Msa1112000:intron 25.0%
! TAACAGTTTCTGCATTATTT+AGG - chr7_3:57759437-57759456 None:intergenic 25.0%
! CGAAAAGTTATGAATAAATG+TGG + chr7_3:57759530-57759549 Msa1112000:intron 25.0%
! ATTACGATTTATGCATGATA+AGG + chr7_3:57759823-57759842 Msa1112000:intron 25.0%
! ATCATATAAATATGGCATTG+TGG + chr7_3:57759987-57760006 Msa1112000:intron 25.0%
! TTGATATGCTACATATGATT+TGG - chr7_3:57760501-57760520 None:intergenic 25.0%
!!! CAATTTTGACTACCATAATA+TGG + chr7_3:57760518-57760537 Msa1112000:intron 25.0%
! GAACATTAAAGTGGATATTT+GGG - chr7_3:57760671-57760690 None:intergenic 25.0%
! TGAACATTAAAGTGGATATT+TGG - chr7_3:57760672-57760691 None:intergenic 25.0%
!!! GATTTCATTTTTGACAATCT+TGG - chr7_3:57761017-57761036 None:intergenic 25.0%
! AAACATTTAAATCCAGGAAT+CGG + chr7_3:57761064-57761083 Msa1112000:intron 25.0%
! GTAAAAATTGCATTTCAACT+CGG - chr7_3:57761473-57761492 None:intergenic 25.0%
!!! GCATTTATTTTATGCCAATA+AGG + chr7_3:57761562-57761581 Msa1112000:intron 25.0%
!!! TTTATTTTATGCCAATAAGG+GGG + chr7_3:57761565-57761584 Msa1112000:intron 25.0%
!!! ATGAAAGTGTTGCATATTTT+AGG + chr7_3:57761737-57761756 Msa1112000:intron 25.0%
!!! TGAAAGTGTTGCATATTTTA+GGG + chr7_3:57761738-57761757 Msa1112000:intron 25.0%
! CACAAATTAAAGCAGATAAA+AGG - chr7_3:57761795-57761814 None:intergenic 25.0%
!! AGCTGATTTAAATTACTTGT+TGG + chr7_3:57762016-57762035 Msa1112000:intron 25.0%
!! GCTGATTTAAATTACTTGTT+GGG + chr7_3:57762017-57762036 Msa1112000:intron 25.0%
!! ATTTGACTTAAACAGTAAAC+AGG - chr7_3:57762395-57762414 None:intergenic 25.0%
! GTTGAACATTAAATGACATT+TGG + chr7_3:57762632-57762651 Msa1112000:intron 25.0%
!! AGACTGTCATAGTAAATTTT+TGG + chr7_3:57763035-57763054 Msa1112000:three_prime_UTR 25.0%
!! TTTATTTCTTTGATATTCGC+AGG + chr7_3:57763064-57763083 Msa1112000:intron 25.0%
! TTGTGAAATTTACTCTCTTA+TGG - chr7_3:57763298-57763317 None:intergenic 25.0%
AAGAATGAAATCAAACAGGT+TGG - chr7_3:57757582-57757601 None:intergenic 30.0%
AGTGAAGAATGAAATCAAAC+AGG - chr7_3:57757586-57757605 None:intergenic 30.0%
ACAATGGAATCAATGAAAGA+GGG - chr7_3:57757618-57757637 None:intergenic 30.0%
AACAATGGAATCAATGAAAG+AGG - chr7_3:57757619-57757638 None:intergenic 30.0%
TTGAGTAAAGGATGAAACTT+CGG - chr7_3:57757779-57757798 None:intergenic 30.0%
CACAGTTGAATTACACAAAA+TGG - chr7_3:57758190-57758209 None:intergenic 30.0%
AATTCAACTGTGTGTATGTT+TGG + chr7_3:57758198-57758217 Msa1112000:intron 30.0%
! TAAAAGTGAGTTGAAGGTAA+AGG + chr7_3:57758257-57758276 Msa1112000:intron 30.0%
AAAAATACTCTCAAATACGG+TGG - chr7_3:57758528-57758547 None:intergenic 30.0%
!!! CAAAAAAATGTTTTAGGGGA+GGG - chr7_3:57758651-57758670 None:intergenic 30.0%
!!! ACAAAAAAATGTTTTAGGGG+AGG - chr7_3:57758652-57758671 None:intergenic 30.0%
! TTTTTGTCTTTTCCCATGTT+AGG + chr7_3:57758665-57758684 Msa1112000:intron 30.0%
! TTTTGTCTTTTCCCATGTTA+GGG + chr7_3:57758666-57758685 Msa1112000:intron 30.0%
ATACAAAATTCCCCTAACAT+GGG - chr7_3:57758680-57758699 None:intergenic 30.0%
AATACAAAATTCCCCTAACA+TGG - chr7_3:57758681-57758700 None:intergenic 30.0%
TATGAAGAAAAACAGATTGG+GGG + chr7_3:57758700-57758719 Msa1112000:intron 30.0%
CTTTCAATAATGCTACTACT+AGG - chr7_3:57758805-57758824 None:intergenic 30.0%
GGACTTATAATTAGGAAGAT+AGG + chr7_3:57758892-57758911 Msa1112000:intron 30.0%
!! TGTTGTTGAATTTGCTAATG+TGG + chr7_3:57758939-57758958 Msa1112000:intron 30.0%
CTTCTTAGAATACACTTCAT+AGG - chr7_3:57759111-57759130 None:intergenic 30.0%
! CTATGAAGTGTATTCTAAGA+AGG + chr7_3:57759109-57759128 Msa1112000:CDS 30.0%
! TTTTATGTTGGTATACCCTA+TGG + chr7_3:57759341-57759360 Msa1112000:CDS 30.0%
TACCCTATGGTATGTATTTA+TGG + chr7_3:57759354-57759373 Msa1112000:intron 30.0%
AGCCATAAATACATACCATA+GGG - chr7_3:57759359-57759378 None:intergenic 30.0%
ATGTATTTATGGCTGTTGTA+TGG + chr7_3:57759365-57759384 Msa1112000:intron 30.0%
AGATGCATTTGAATATAGCA+AGG + chr7_3:57759457-57759476 Msa1112000:intron 30.0%
!!! AAGGTTTTAAATTGGAGTTG+TGG + chr7_3:57759476-57759495 Msa1112000:intron 30.0%
CTGCAATATCATTATTTGGA+AGG - chr7_3:57759587-57759606 None:intergenic 30.0%
TCAATAAATAATCTAGTCCG+TGG - chr7_3:57759642-57759661 None:intergenic 30.0%
TTGTCCTCAACCTATTAATA+GGG - chr7_3:57759750-57759769 None:intergenic 30.0%
ATTGTCCTCAACCTATTAAT+AGG - chr7_3:57759751-57759770 None:intergenic 30.0%
GCATATTTAAGTCCTACAAA+AGG - chr7_3:57759854-57759873 None:intergenic 30.0%
AGGACTTAAATATGCTGATA+AGG + chr7_3:57759859-57759878 Msa1112000:intron 30.0%
TGATGAAAGTTATCCTCTAA+TGG + chr7_3:57759898-57759917 Msa1112000:intron 30.0%
! GTCATTGATAACATTGACAA+GGG - chr7_3:57759934-57759953 None:intergenic 30.0%
CTTGTCAATGTTATCAATGA+CGG + chr7_3:57759933-57759952 Msa1112000:intron 30.0%
! TGATAAAGCATTCAATAAGC+CGG - chr7_3:57760544-57760563 None:intergenic 30.0%
GATATGACTATTATACTGAC+TGG + chr7_3:57760620-57760639 Msa1112000:intron 30.0%
ATTAAAGTGGATATTTGGGA+GGG - chr7_3:57760667-57760686 None:intergenic 30.0%
ACATCACATGAACATTAAAG+TGG - chr7_3:57760680-57760699 None:intergenic 30.0%
TAACAAACCTGCAAAGTAAT+AGG - chr7_3:57760714-57760733 None:intergenic 30.0%
TTCCTTTCCTTTATGATAAC+AGG + chr7_3:57760749-57760768 Msa1112000:CDS 30.0%
TTCCTGTTATCATAAAGGAA+AGG - chr7_3:57760754-57760773 None:intergenic 30.0%
AATGCTTCCTGTTATCATAA+AGG - chr7_3:57760759-57760778 None:intergenic 30.0%
GAGAGAAAACATTTAAATCC+AGG + chr7_3:57761058-57761077 Msa1112000:intron 30.0%
TGTTTATTGTGATTCAAAGG+TGG - chr7_3:57761125-57761144 None:intergenic 30.0%
!! TTAATGGGCTTCTATTTCAT+GGG - chr7_3:57761260-57761279 None:intergenic 30.0%
TGTAAATTACATACCCTTTC+CGG - chr7_3:57761287-57761306 None:intergenic 30.0%
! AAATCATATCTTGGTGTGAT+TGG - chr7_3:57761396-57761415 None:intergenic 30.0%
! TCACACCAAGATATGATTTT+TGG + chr7_3:57761397-57761416 Msa1112000:intron 30.0%
!!! ATTTTTGGTGTGCATAAGAT+TGG + chr7_3:57761412-57761431 Msa1112000:intron 30.0%
! ATTGGTCAATAGTATTGAAC+TGG + chr7_3:57761430-57761449 Msa1112000:intron 30.0%
TCATGGTCGAAATGATTTAT+TGG + chr7_3:57761610-57761629 Msa1112000:intron 30.0%
CATGGTCGAAATGATTTATT+GGG + chr7_3:57761611-57761630 Msa1112000:intron 30.0%
TCGAAATGATTTATTGGGTT+TGG + chr7_3:57761616-57761635 Msa1112000:intron 30.0%
AATTTAAATCAGCTTTGCGA+TGG - chr7_3:57762010-57762029 None:intergenic 30.0%
TAAACATGAAAAACAGCAAG+TGG - chr7_3:57762340-57762359 None:intergenic 30.0%
TTGAATAGAAACCTAATGCT+AGG - chr7_3:57762597-57762616 None:intergenic 30.0%
TTAGAAGGTAAACCACAAAA+AGG + chr7_3:57762775-57762794 Msa1112000:CDS 30.0%
! TCAAAGTTTGAACCTTTTTG+TGG - chr7_3:57762790-57762809 None:intergenic 30.0%
CAAAAAGGTTCAAACTTTGA+AGG + chr7_3:57762790-57762809 Msa1112000:CDS 30.0%
! AAGCAATATCATGATTTTCC+AGG - chr7_3:57763152-57763171 None:intergenic 30.0%
! TGCATGAACTACATTTTATG+TGG + chr7_3:57763206-57763225 Msa1112000:three_prime_UTR 30.0%
! GCATGAACTACATTTTATGT+GGG + chr7_3:57763207-57763226 Msa1112000:three_prime_UTR 30.0%
TTATGTGGGATATTATGAAC+TGG + chr7_3:57763221-57763240 Msa1112000:three_prime_UTR 30.0%
GATGTTTCTCTTACCAAATA+AGG + chr7_3:57763367-57763386 Msa1112000:three_prime_UTR 30.0%
!!! CACTTTTTCACATCCTTATT+TGG - chr7_3:57763383-57763402 None:intergenic 30.0%
! ATAAGGATGTGAAAAAGTGT+AGG + chr7_3:57763384-57763403 Msa1112000:three_prime_UTR 30.0%
! CAGAGGAAGTTTGGAATAAT+CGG - chr7_3:57757545-57757564 None:intergenic 35.0%
!! AATCAAACAGGTTGGTTGTT+CGG - chr7_3:57757574-57757593 None:intergenic 35.0%
!! GAAGCCATTTAGGTTGAAAA+GGG - chr7_3:57757686-57757705 None:intergenic 35.0%
TAACACAGAAACTGAATCCA+TGG - chr7_3:57757720-57757739 None:intergenic 35.0%
!! GGGACCAAAATTGATTTTAG+AGG - chr7_3:57758416-57758435 None:intergenic 35.0%
!! AAAATCAATTTTGGTCCCTC+TGG + chr7_3:57758418-57758437 Msa1112000:intron 35.0%
! TTTGTCTTTTCCCATGTTAG+GGG + chr7_3:57758667-57758686 Msa1112000:intron 35.0%
!! AAGAGCTTTGAGAAAAAGGA+AGG - chr7_3:57758735-57758754 None:intergenic 35.0%
TATGTTTGGGAGTTTAGTAG+GGG - chr7_3:57758762-57758781 None:intergenic 35.0%
CTATGTTTGGGAGTTTAGTA+GGG - chr7_3:57758763-57758782 None:intergenic 35.0%
! ATGTGGATTGTGAACTGTAT+AGG + chr7_3:57758956-57758975 Msa1112000:intron 35.0%
TTGTGAACTGTATAGGATCA+TGG + chr7_3:57758963-57758982 Msa1112000:intron 35.0%
!! AACAAGCTTTGAAGCTACAA+GGG + chr7_3:57759072-57759091 Msa1112000:CDS 35.0%
AGTATCTTGCAAAACCACAA+TGG - chr7_3:57759135-57759154 None:intergenic 35.0%
TTCAGAACAGTTGAAGATAC+AGG + chr7_3:57759154-57759173 Msa1112000:CDS 35.0%
CAAATCATGTCTTGCCTTAT+CGG - chr7_3:57759180-57759199 None:intergenic 35.0%
! AAGACATGATTTGAGTGTTG+TGG + chr7_3:57759187-57759206 Msa1112000:CDS 35.0%
CAGCCATAAATACATACCAT+AGG - chr7_3:57759360-57759379 None:intergenic 35.0%
GAATAAATGTGGCTGAATTG+TGG + chr7_3:57759541-57759560 Msa1112000:intron 35.0%
TAGTCCGTGGTTTCAATTTA+CGG - chr7_3:57759629-57759648 None:intergenic 35.0%
!! TGTTGTTGGCTAAAGTTTTG+TGG + chr7_3:57759662-57759681 Msa1112000:intron 35.0%
GATTCTATACCGACACATTT+AGG + chr7_3:57759718-57759737 Msa1112000:intron 35.0%
TAGGCTAAGTCCCTATTAAT+AGG + chr7_3:57759737-57759756 Msa1112000:intron 35.0%
AAGTCCCTATTAATAGGTTG+AGG + chr7_3:57759743-57759762 Msa1112000:intron 35.0%
ACTTGATCATCTTCACATGT+TGG + chr7_3:57759776-57759795 Msa1112000:intron 35.0%
CTTGATCATCTTCACATGTT+GGG + chr7_3:57759777-57759796 Msa1112000:intron 35.0%
AAATCGTAATCCCCATTAGT+AGG - chr7_3:57759813-57759832 None:intergenic 35.0%
!!! GATAAGGATTAGCCTTTTGT+AGG + chr7_3:57759839-57759858 Msa1112000:intron 35.0%
AAAGTTATCCTCTAATGGAG+AGG + chr7_3:57759903-57759922 Msa1112000:intron 35.0%
! CGTCATTGATAACATTGACA+AGG - chr7_3:57759935-57759954 None:intergenic 35.0%
ATGCCTATATTATCTGCCAT+AGG - chr7_3:57760013-57760032 None:intergenic 35.0%
TGGCAGATAATATAGGCATA+TGG + chr7_3:57760014-57760033 Msa1112000:intron 35.0%
ATAATGCCATGTCAGCAATT+TGG + chr7_3:57760060-57760079 Msa1112000:intron 35.0%
ATCAGTCCTTACTCCTTATA+AGG - chr7_3:57760096-57760115 None:intergenic 35.0%
TTTGACTACCATAATATGGC+CGG + chr7_3:57760522-57760541 Msa1112000:intron 35.0%
CATTAAAGTGGATATTTGGG+AGG - chr7_3:57760668-57760687 None:intergenic 35.0%
TGATACTCCTATTACTTTGC+AGG + chr7_3:57760704-57760723 Msa1112000:intron 35.0%
!! ATAAGGTTTGGGGTGATTTT+AGG + chr7_3:57760785-57760804 Msa1112000:CDS 35.0%
CATACTATTGCAAACGTTAG+AGG - chr7_3:57760991-57761010 None:intergenic 35.0%
ATCTCCTACCTAAGATTGAA+AGG + chr7_3:57761034-57761053 Msa1112000:intron 35.0%
TCTCCTACCTAAGATTGAAA+GGG + chr7_3:57761035-57761054 Msa1112000:intron 35.0%
GAGAAAATATAAGTGGAGAC+CGG + chr7_3:57761205-57761224 Msa1112000:intron 35.0%
! GACTATAGTCCTCTATTTTC+CGG - chr7_3:57761227-57761246 None:intergenic 35.0%
!! CTTAATGGGCTTCTATTTCA+TGG - chr7_3:57761261-57761280 None:intergenic 35.0%
ATAGAAGCCCATTAAGTAAC+CGG + chr7_3:57761265-57761284 Msa1112000:intron 35.0%
! GGAAAGGGTATGTAATTTAC+AGG + chr7_3:57761286-57761305 Msa1112000:intron 35.0%
TAGGATGACCTAGAATACTT+GGG - chr7_3:57761371-57761390 None:intergenic 35.0%
GCACACCAAAAATCATATCT+TGG - chr7_3:57761405-57761424 None:intergenic 35.0%
TCAACGCATCCAATTATCAT+TGG + chr7_3:57761500-57761519 Msa1112000:intron 35.0%
TTTGAAGAAAACCCCCTTAT+TGG - chr7_3:57761579-57761598 None:intergenic 35.0%
! GAAATCGTAAAAGTATGGGT+TGG + chr7_3:57761684-57761703 Msa1112000:intron 35.0%
AACAAGTGCAAGCTAGTAAT+TGG - chr7_3:57761715-57761734 None:intergenic 35.0%
!! AAGGCACATATAAGTATCGA+TGG - chr7_3:57761902-57761921 None:intergenic 35.0%
TGTTTAGAGAGCTGGATAAA+AGG - chr7_3:57761921-57761940 None:intergenic 35.0%
!! AGTGAAATAAGTTGATCCCT+GGG - chr7_3:57762196-57762215 None:intergenic 35.0%
CTTATTTCACTGCTTTGATC+AGG + chr7_3:57762205-57762224 Msa1112000:CDS 35.0%
TTGAGATTATCGGTAAAGGT+TGG - chr7_3:57762317-57762336 None:intergenic 35.0%
TTCCTACTTGACATTGCATT+TGG + chr7_3:57762466-57762485 Msa1112000:intron 35.0%
ACTGGCAAATAATTGCTAGT+TGG + chr7_3:57762489-57762508 Msa1112000:intron 35.0%
! GGCATTTTATGTCTATAGAC+TGG + chr7_3:57762750-57762769 Msa1112000:CDS 35.0%
!!! GTCTATAGACTGGTTTTAGA+AGG + chr7_3:57762760-57762779 Msa1112000:CDS 35.0%
AGGAAACTAGTTCAGTGATA+AGG + chr7_3:57762819-57762838 Msa1112000:exon 35.0%
! AGGAAGTTTGGAATAATCGG+TGG - chr7_3:57757542-57757561 None:intergenic 40.0%
GAAAACGAGAGTTTGGGAAT+TGG - chr7_3:57757659-57757678 None:intergenic 40.0%
! TTCGCCCTTTTCAACCTAAA+TGG + chr7_3:57757679-57757698 Msa1112000:exon 40.0%
!! CGAAGCCATTTAGGTTGAAA+AGG - chr7_3:57757687-57757706 None:intergenic 40.0%
GAAACTCATCGAAGCCATTT+AGG - chr7_3:57757696-57757715 None:intergenic 40.0%
! AGAGTTTGAAAGTGGTGTTG+CGG - chr7_3:57757805-57757824 None:intergenic 40.0%
AGGAAGAGAGAGTTTGAAAG+TGG - chr7_3:57757813-57757832 None:intergenic 40.0%
CATGACTCTGTAAGTCCAAA+AGG + chr7_3:57757896-57757915 Msa1112000:intron 40.0%
! TCTGGCTAAAAGTGAGTTGA+AGG + chr7_3:57758251-57758270 Msa1112000:intron 40.0%
! GTTTTTCTGCAGCTCTGTTT+GGG + chr7_3:57758440-57758459 Msa1112000:intron 40.0%
!!! AATGTTTTAGGGGAGGGTTT+AGG - chr7_3:57758645-57758664 None:intergenic 40.0%
!! AGGGAAGAGCTTTGAGAAAA+AGG - chr7_3:57758739-57758758 None:intergenic 40.0%
GCTATGTTTGGGAGTTTAGT+AGG - chr7_3:57758764-57758783 None:intergenic 40.0%
TGCTACTACTAGGTTGTCTT+GGG - chr7_3:57758795-57758814 None:intergenic 40.0%
ATGCTACTACTAGGTTGTCT+TGG - chr7_3:57758796-57758815 None:intergenic 40.0%
ATAGGATCATGGTGAAGTTG+AGG + chr7_3:57758974-57758993 Msa1112000:intron 40.0%
!! GAATGATGTTAGTTCTGAGG+AGG + chr7_3:57759007-57759026 Msa1112000:CDS 40.0%
!! GAACAAGCTTTGAAGCTACA+AGG + chr7_3:57759071-57759090 Msa1112000:CDS 40.0%
!! ACAAGCTTTGAAGCTACAAG+GGG + chr7_3:57759073-57759092 Msa1112000:CDS 40.0%
! GTATTCTAAGAAGGCCATTG+TGG + chr7_3:57759118-57759137 Msa1112000:CDS 40.0%
TTTGCTGAGATCATCATCTG+GGG - chr7_3:57759303-57759322 None:intergenic 40.0%
CTTTGCTGAGATCATCATCT+GGG - chr7_3:57759304-57759323 None:intergenic 40.0%
ACTTTGCTGAGATCATCATC+TGG - chr7_3:57759305-57759324 None:intergenic 40.0%
GATGATCTCAGCAAAGTTTC+TGG + chr7_3:57759308-57759327 Msa1112000:CDS 40.0%
!! TCAGCAAAGTTTCTGGAGTT+CGG + chr7_3:57759315-57759334 Msa1112000:CDS 40.0%
GCGGCTGCAATATCATTATT+TGG - chr7_3:57759591-57759610 None:intergenic 40.0%
TCGACCGTAAATTGAAACCA+CGG + chr7_3:57759622-57759641 Msa1112000:intron 40.0%
!! TGTTGGCTAAAGTTTTGTGG+CGG + chr7_3:57759665-57759684 Msa1112000:intron 40.0%
!! GAGGTATTGCTCCTACTAAT+GGG + chr7_3:57759799-57759818 Msa1112000:intron 40.0%
! AGGTATTGCTCCTACTAATG+GGG + chr7_3:57759800-57759819 Msa1112000:intron 40.0%
AAATATGGCATTGTGGCCTA+TGG + chr7_3:57759994-57760013 Msa1112000:intron 40.0%
TGGCCTATGGCAGATAATAT+AGG + chr7_3:57760007-57760026 Msa1112000:intron 40.0%
GTTGTTGACACAATCAGTCA+TGG + chr7_3:57760036-57760055 Msa1112000:intron 40.0%
TCCTTACTCCTTATAAGGAC+CGG - chr7_3:57760091-57760110 None:intergenic 40.0%
TGATGTTGTGGGTGTCTTTA+TGG + chr7_3:57760112-57760131 Msa1112000:intron 40.0%
TGGGTGTCTTTATGGATGTT+GGG + chr7_3:57760120-57760139 Msa1112000:intron 40.0%
CGTTGAATTGTATGCGCTTT+CGG + chr7_3:57760186-57760205 Msa1112000:intron 40.0%
TCAATAAGCCGGCCATATTA+TGG - chr7_3:57760533-57760552 None:intergenic 40.0%
!! TGCAGGTTTGTTACTATCTG+CGG + chr7_3:57760721-57760740 Msa1112000:intron 40.0%
AGCATTGCAGCAATAAGGTT+TGG + chr7_3:57760773-57760792 Msa1112000:CDS 40.0%
GCATTGCAGCAATAAGGTTT+GGG + chr7_3:57760774-57760793 Msa1112000:CDS 40.0%
CATTGCAGCAATAAGGTTTG+GGG + chr7_3:57760775-57760794 Msa1112000:CDS 40.0%
!! GATTTTAGGTGGTGTGCTAT+TGG + chr7_3:57760799-57760818 Msa1112000:CDS 40.0%
AGCATATGATCTTACCTGTC+TGG - chr7_3:57760889-57760908 None:intergenic 40.0%
CTCCTACCTAAGATTGAAAG+GGG + chr7_3:57761036-57761055 Msa1112000:intron 40.0%
TTCTCTCCCCTTTCAATCTT+AGG - chr7_3:57761045-57761064 None:intergenic 40.0%
ACCCTTTCCGGTTACTTAAT+GGG - chr7_3:57761275-57761294 None:intergenic 40.0%
TACCCTTTCCGGTTACTTAA+TGG - chr7_3:57761276-57761295 None:intergenic 40.0%
GTAGGATGACCTAGAATACT+TGG - chr7_3:57761372-57761391 None:intergenic 40.0%
! TATCTTGGTGTGATTGGTGT+AGG - chr7_3:57761390-57761409 None:intergenic 40.0%
! GGTCAATAGTATTGAACTGG+AGG + chr7_3:57761433-57761452 Msa1112000:intron 40.0%
! GTTGATGTTGTTTAGAGAGC+TGG - chr7_3:57761929-57761948 None:intergenic 40.0%
!!! CTCTTGTTTTCCTTTTCCCA+GGG + chr7_3:57762177-57762196 Msa1112000:intron 40.0%
!! ATAAGTTGATCCCTGGGAAA+AGG - chr7_3:57762190-57762209 None:intergenic 40.0%
!! CAGTGAAATAAGTTGATCCC+TGG - chr7_3:57762197-57762216 None:intergenic 40.0%
ATTATCGGTAAAGGTTGGCA+TGG - chr7_3:57762312-57762331 None:intergenic 40.0%
GTGGTTGAGATTATCGGTAA+AGG - chr7_3:57762321-57762340 None:intergenic 40.0%
CAGCAAGTGGTTGAGATTAT+CGG - chr7_3:57762327-57762346 None:intergenic 40.0%
GTCCAAATGCAATGTCAAGT+AGG - chr7_3:57762471-57762490 None:intergenic 40.0%
ACTTGACATTGCATTTGGAC+TGG + chr7_3:57762471-57762490 Msa1112000:intron 40.0%
CAGAAAACTCACCTAGCATT+AGG + chr7_3:57762583-57762602 Msa1112000:intron 40.0%
TATTCAACCTGCAGAAATGC+AGG + chr7_3:57762610-57762629 Msa1112000:intron 40.0%
! ACTTTGTTTGGCATTTGCAG+TGG + chr7_3:57762718-57762737 Msa1112000:intron 40.0%
! TCAAACTTTGAAGGTGAAGC+AGG + chr7_3:57762799-57762818 Msa1112000:CDS 40.0%
TTTCTTTGATATTCGCAGGC+CGG + chr7_3:57763068-57763087 Msa1112000:intron 40.0%
TTGCTGATGGTTAGGATTAG+TGG + chr7_3:57763105-57763124 Msa1112000:three_prime_UTR 40.0%
! TGGTTAGGATTAGTGGTTCA+TGG + chr7_3:57763112-57763131 Msa1112000:three_prime_UTR 40.0%
! GGTTAGGATTAGTGGTTCAT+GGG + chr7_3:57763113-57763132 Msa1112000:three_prime_UTR 40.0%
AGTGAAGACTGAAGAATGCA+AGG - chr7_3:57763275-57763294 None:intergenic 40.0%
TTTACATGCTTACTTGAGCC+TGG + chr7_3:57763318-57763337 Msa1112000:three_prime_UTR 40.0%
TTACATGCTTACTTGAGCCT+GGG + chr7_3:57763319-57763338 Msa1112000:three_prime_UTR 40.0%
! GTTAGTTACTTTACAACCCC+AGG - chr7_3:57763339-57763358 None:intergenic 40.0%
!! GGTTTTGTCACGTGTGTGTT+GGG - chr7_3:57757521-57757540 None:intergenic 45.0%
!!! TGGTTTTGTCACGTGTGTGT+TGG - chr7_3:57757522-57757541 None:intergenic 45.0%
CGGAAAATGCAGAGGAAGTT+TGG - chr7_3:57757554-57757573 None:intergenic 45.0%
TGGTTGTTCGGAAAATGCAG+AGG - chr7_3:57757562-57757581 None:intergenic 45.0%
GGCGAAGAAAACGAGAGTTT+GGG - chr7_3:57757665-57757684 None:intergenic 45.0%
GATGGGTGTGGTTGAGTTTA+GGG - chr7_3:57757745-57757764 None:intergenic 45.0%
AGATGGGTGTGGTTGAGTTT+AGG - chr7_3:57757746-57757765 None:intergenic 45.0%
CTTCGGAGAATGAGAGAGAT+GGG - chr7_3:57757762-57757781 None:intergenic 45.0%
ACTTCGGAGAATGAGAGAGA+TGG - chr7_3:57757763-57757782 None:intergenic 45.0%
GTGTTGCGGTGTTTGAGTAA+AGG - chr7_3:57757791-57757810 None:intergenic 45.0%
GGACTTACAGAGTCATGTTG+AGG - chr7_3:57757893-57757912 None:intergenic 45.0%
AGAGCTGCAGAAAAACCAGA+GGG - chr7_3:57758436-57758455 None:intergenic 45.0%
! GGTTTTTCTGCAGCTCTGTT+TGG + chr7_3:57758439-57758458 Msa1112000:intron 45.0%
TTTGGGAGTTTAGTAGGGGA+GGG - chr7_3:57758758-57758777 None:intergenic 45.0%
GGGAGATGAAGGCTATGTTT+GGG - chr7_3:57758775-57758794 None:intergenic 45.0%
TGGGAGATGAAGGCTATGTT+TGG - chr7_3:57758776-57758795 None:intergenic 45.0%
TAGGTTGTCTTGGGAGATGA+AGG - chr7_3:57758786-57758805 None:intergenic 45.0%
TGGTGAAGTTGAGGTAGAGA+AGG + chr7_3:57758983-57759002 Msa1112000:CDS 45.0%
GGTGAAGTTGAGGTAGAGAA+GGG + chr7_3:57758984-57759003 Msa1112000:CDS 45.0%
GTGAAGTTGAGGTAGAGAAG+GGG + chr7_3:57758985-57759004 Msa1112000:CDS 45.0%
!! GGGGAATGATGTTAGTTCTG+AGG + chr7_3:57759004-57759023 Msa1112000:CDS 45.0%
!! TAGTTCTGAGGAGGAATCAC+AGG + chr7_3:57759016-57759035 Msa1112000:CDS 45.0%
!! GCAGGCTTTGGATACATTCA+AGG + chr7_3:57759049-57759068 Msa1112000:CDS 45.0%
GTTGAAGATACAGGCCGATA+AGG + chr7_3:57759163-57759182 Msa1112000:CDS 45.0%
! TGATTTGAGTGTTGTGGCGA+AGG + chr7_3:57759193-57759212 Msa1112000:CDS 45.0%
GCGAAGGAAATCACTGAAGA+AGG + chr7_3:57759209-57759228 Msa1112000:CDS 45.0%
TGAGAATTCACCTGAGGTGA+AGG + chr7_3:57759256-57759275 Msa1112000:CDS 45.0%
ACCTGAGGTGAAGGAAATTG+TGG + chr7_3:57759265-57759284 Msa1112000:CDS 45.0%
TCCACAATTTCCTTCACCTC+AGG - chr7_3:57759269-57759288 None:intergenic 45.0%
!! CAGCAAAGTTTCTGGAGTTC+GGG + chr7_3:57759316-57759335 Msa1112000:CDS 45.0%
! GGAGTTCGGGACTTTTATGT+TGG + chr7_3:57759329-57759348 Msa1112000:CDS 45.0%
GCTGAATTGTGGTTACGATG+CGG + chr7_3:57759552-57759571 Msa1112000:intron 45.0%
GGGACTTAGCCTAAATGTGT+CGG - chr7_3:57759730-57759749 None:intergenic 45.0%
GATCATCTTCACATGTTGGG+AGG + chr7_3:57759780-57759799 Msa1112000:intron 45.0%
!! GGAGGTATTGCTCCTACTAA+TGG + chr7_3:57759798-57759817 Msa1112000:intron 45.0%
!! CAATGACGGACGACAGATTA+TGG + chr7_3:57759947-57759966 Msa1112000:intron 45.0%
GTGTTGCCAAATTGCTGACA+TGG - chr7_3:57760069-57760088 None:intergenic 45.0%
TGTCAGCAATTTGGCAACAC+CGG + chr7_3:57760069-57760088 Msa1112000:intron 45.0%
ACCGGTCCTTATAAGGAGTA+AGG + chr7_3:57760087-57760106 Msa1112000:intron 45.0%
AGGAGTAAGGACTGATGTTG+TGG + chr7_3:57760100-57760119 Msa1112000:intron 45.0%
GGAGTAAGGACTGATGTTGT+GGG + chr7_3:57760101-57760120 Msa1112000:intron 45.0%
GTGGGTGTCTTTATGGATGT+TGG + chr7_3:57760119-57760138 Msa1112000:intron 45.0%
GATGTTGGGCTGATGTAACA+GGG + chr7_3:57760134-57760153 Msa1112000:intron 45.0%
!! GCAGGTTTGTTACTATCTGC+GGG + chr7_3:57760722-57760741 Msa1112000:intron 45.0%
!! CAGGAAGCATTGCAGCAATA+AGG + chr7_3:57760768-57760787 Msa1112000:CDS 45.0%
!! AGGTTTGGGGTGATTTTAGG+TGG + chr7_3:57760788-57760807 Msa1112000:CDS 45.0%
CCCTTCAAAGCAAGAGAAGA+GGG - chr7_3:57760866-57760885 None:intergenic 45.0%
! CCCTCTTCTCTTGCTTTGAA+GGG + chr7_3:57760863-57760882 Msa1112000:CDS 45.0%
CTCCCCTTTCAATCTTAGGT+AGG - chr7_3:57761041-57761060 None:intergenic 45.0%
AAGTGGAGACCGGAAAATAG+AGG + chr7_3:57761215-57761234 Msa1112000:intron 45.0%
CTTCTATTTCATGGGACCGT+GGG - chr7_3:57761252-57761271 None:intergenic 45.0%
AGCCCATTAAGTAACCGGAA+AGG + chr7_3:57761270-57761289 Msa1112000:intron 45.0%
GCCCATTAAGTAACCGGAAA+GGG + chr7_3:57761271-57761290 Msa1112000:intron 45.0%
ACCTTTACTGCAGGTCTAGT+GGG - chr7_3:57761315-57761334 None:intergenic 45.0%
! TAGACCTGCAGTAAAGGTGT+GGG + chr7_3:57761317-57761336 Msa1112000:intron 45.0%
ACCTAGAATACTTGGGCGAT+TGG - chr7_3:57761364-57761383 None:intergenic 45.0%
CTGCGTGAGATCAGCATATT+AGG + chr7_3:57762067-57762086 Msa1112000:CDS 45.0%
!!! GCTCTTGTTTTCCTTTTCCC+AGG + chr7_3:57762176-57762195 Msa1112000:intron 45.0%
TGTTCAACCTGCATTTCTGC+AGG - chr7_3:57762620-57762639 None:intergenic 45.0%
TTCTTTGATATTCGCAGGCC+GGG + chr7_3:57763069-57763088 Msa1112000:intron 45.0%
AAGACTCGTTGCTGATGGTT+AGG + chr7_3:57763097-57763116 Msa1112000:three_prime_UTR 45.0%
! TAGGATTAGTGGTTCATGGG+TGG + chr7_3:57763116-57763135 Msa1112000:three_prime_UTR 45.0%
TACATGCTTACTTGAGCCTG+GGG + chr7_3:57763320-57763339 Msa1112000:three_prime_UTR 45.0%
!!! TATTTATATGATAAATTTTT+TGG - chr7_3:57759979-57759998 None:intergenic 5.0%
!! AAAAATTTATCATATAAATA+TGG + chr7_3:57759979-57759998 Msa1112000:intron 5.0%
GGGCGAAGAAAACGAGAGTT+TGG - chr7_3:57757666-57757685 None:intergenic 50.0%
GGCTTCGATGAGTTTCACCA+TGG + chr7_3:57757700-57757719 Msa1112000:CDS 50.0%
GAGAATGAGAGAGATGGGTG+TGG - chr7_3:57757757-57757776 None:intergenic 50.0%
! CGTTGATTGAGGGCATAACG+AGG - chr7_3:57757833-57757852 None:intergenic 50.0%
!! CGGTTTGCTGCGTTGATTGA+GGG - chr7_3:57757843-57757862 None:intergenic 50.0%
!! ACGGTTTGCTGCGTTGATTG+AGG - chr7_3:57757844-57757863 None:intergenic 50.0%
GCAGCGAAAACGAGGGTTAA+CGG - chr7_3:57757863-57757882 None:intergenic 50.0%
CAGAGCTGCAGAAAAACCAG+AGG - chr7_3:57758437-57758456 None:intergenic 50.0%
TGCAGCTCTGTTTGGGAGTT+TGG + chr7_3:57758447-57758466 Msa1112000:intron 50.0%
AGCTCTGTTTGGGAGTTTGG+AGG + chr7_3:57758450-57758469 Msa1112000:intron 50.0%
GCTCTGTTTGGGAGTTTGGA+GGG + chr7_3:57758451-57758470 Msa1112000:intron 50.0%
CTCTGTTTGGGAGTTTGGAG+GGG + chr7_3:57758452-57758471 Msa1112000:intron 50.0%
GTTTGGGAGTTTAGTAGGGG+AGG - chr7_3:57758759-57758778 None:intergenic 50.0%
AGGAGGAATCACAGGAAGCA+TGG + chr7_3:57759024-57759043 Msa1112000:CDS 50.0%
! ATCACAGGAAGCATGGAAGC+AGG + chr7_3:57759031-57759050 Msa1112000:CDS 50.0%
TGCTGCTGAGAATTCACCTG+AGG + chr7_3:57759250-57759269 Msa1112000:CDS 50.0%
ACGGTCGATGACAGCAATTG+CGG - chr7_3:57759610-57759629 None:intergenic 50.0%
!! TGGCTAAAGTTTTGTGGCGG+CGG + chr7_3:57759668-57759687 Msa1112000:intron 50.0%
GGGCTTTACCTCTCCATTAG+AGG - chr7_3:57759914-57759933 None:intergenic 50.0%
TGGCAACACCGGTCCTTATA+AGG + chr7_3:57760080-57760099 Msa1112000:intron 50.0%
GGATGTTGGGCTGATGTAAC+AGG + chr7_3:57760133-57760152 Msa1112000:intron 50.0%
!! GGTTTGTTACTATCTGCGGG+TGG + chr7_3:57760725-57760744 Msa1112000:intron 50.0%
GCCCTCTTCTCTTGCTTTGA+AGG + chr7_3:57760862-57760881 Msa1112000:CDS 50.0%
GCCCTTCAAAGCAAGAGAAG+AGG - chr7_3:57760867-57760886 None:intergenic 50.0%
TAGTAGGGTCTTCCGATTCC+TGG - chr7_3:57761079-57761098 None:intergenic 50.0%
AGAGGACTATAGTCAGCCCA+CGG + chr7_3:57761233-57761252 Msa1112000:intron 50.0%
GCTTCTATTTCATGGGACCG+TGG - chr7_3:57761253-57761272 None:intergenic 50.0%
ACCCACTAGACCTGCAGTAA+AGG + chr7_3:57761311-57761330 Msa1112000:intron 50.0%
CACCTTTACTGCAGGTCTAG+TGG - chr7_3:57761316-57761335 None:intergenic 50.0%
CTAGACCTGCAGTAAAGGTG+TGG + chr7_3:57761316-57761335 Msa1112000:intron 50.0%
ATTGGCAGGCTTCTGCAATC+AGG - chr7_3:57761346-57761365 None:intergenic 50.0%
AGAATACTTGGGCGATTGGC+AGG - chr7_3:57761360-57761379 None:intergenic 50.0%
GCCAATCGCCCAAGTATTCT+AGG + chr7_3:57761360-57761379 Msa1112000:intron 50.0%
GTTTGGCATTTGCAGTGGTG+CGG + chr7_3:57762723-57762742 Msa1112000:intron 50.0%
TCGTCAAGACTCGTTGCTGA+TGG + chr7_3:57763092-57763111 Msa1112000:three_prime_UTR 50.0%
ATGGGTGGAAAAATCGAGCC+TGG + chr7_3:57763131-57763150 Msa1112000:three_prime_UTR 50.0%
CGTAGCAGCAGCGAAAACGA+GGG - chr7_3:57757870-57757889 None:intergenic 55.0%
GGAGTTTGGAGGGGAGTAGA+GGG + chr7_3:57758461-57758480 Msa1112000:intron 55.0%
! GGAAGCATGGAAGCAGGCTT+TGG + chr7_3:57759037-57759056 Msa1112000:CDS 55.0%
GCTGAGATCATCATCTGGGG+AGG - chr7_3:57759300-57759319 None:intergenic 55.0%
GGCTGATGTAACAGGGCTCA+TGG + chr7_3:57760141-57760160 Msa1112000:intron 55.0%
!! CTTGCTTTGAAGGGCCAGAC+AGG + chr7_3:57760872-57760891 Msa1112000:CDS 55.0%
GATGCCCACACCTTTACTGC+AGG - chr7_3:57761324-57761343 None:intergenic 55.0%
GTTGGGCTTGCAGCTATAGC+AGG + chr7_3:57762034-57762053 Msa1112000:intron 55.0%
CATTTGCAGTGGTGCGGTAG+CGG + chr7_3:57762729-57762748 Msa1112000:intron 55.0%
AGCAACGAGTCTTGACGACC+CGG - chr7_3:57763090-57763109 None:intergenic 55.0%
GCGTAGCAGCAGCGAAAACG+AGG - chr7_3:57757871-57757890 None:intergenic 60.0%
GGGAGTTTGGAGGGGAGTAG+AGG + chr7_3:57758460-57758479 Msa1112000:intron 60.0%
TGGAGGGGAGTAGAGGGCTT+TGG + chr7_3:57758467-57758486 Msa1112000:intron 60.0%
GGAGGGGAGTAGAGGGCTTT+GGG + chr7_3:57758468-57758487 Msa1112000:intron 60.0%
GAGGGGAGTAGAGGGCTTTG+GGG + chr7_3:57758469-57758488 Msa1112000:intron 60.0%
! AGGGGAGTAGAGGGCTTTGG+GGG + chr7_3:57758470-57758489 Msa1112000:intron 60.0%
!! AGTAGAGGGCTTTGGGGGGA+GGG + chr7_3:57758475-57758494 Msa1112000:intron 60.0%
!! GGGGAGTAGAGGGCTTTGGG+GGG + chr7_3:57758471-57758490 Msa1112000:intron 65.0%
!! GAGTAGAGGGCTTTGGGGGG+AGG + chr7_3:57758474-57758493 Msa1112000:intron 65.0%
!! GTAGAGGGCTTTGGGGGGAG+GGG + chr7_3:57758476-57758495 Msa1112000:intron 65.0%
! CTTTGGGGGGAGGGGAAGAG+AGG + chr7_3:57758484-57758503 Msa1112000:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57757517 57763466 57757517 ID=Msa1112000;Name=Msa1112000
chr7_3 mRNA 57757517 57763466 57757517 ID=Msa1112000-mRNA-1;Parent=Msa1112000;Name=Msa1112000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181|1|1|1|0.57|0.62|8|471|308
chr7_3 exon 57757517 57757904 57757517 ID=Msa1112000-mRNA-1:exon:12561;Parent=Msa1112000-mRNA-1
chr7_3 exon 57758978 57759362 57758978 ID=Msa1112000-mRNA-1:exon:12562;Parent=Msa1112000-mRNA-1
chr7_3 exon 57760726 57760893 57760726 ID=Msa1112000-mRNA-1:exon:12563;Parent=Msa1112000-mRNA-1
chr7_3 exon 57762047 57762093 57762047 ID=Msa1112000-mRNA-1:exon:12564;Parent=Msa1112000-mRNA-1
chr7_3 exon 57762198 57762226 57762198 ID=Msa1112000-mRNA-1:exon:12565;Parent=Msa1112000-mRNA-1
chr7_3 exon 57762738 57762840 57762738 ID=Msa1112000-mRNA-1:exon:12566;Parent=Msa1112000-mRNA-1
chr7_3 exon 57762980 57763062 57762980 ID=Msa1112000-mRNA-1:exon:12567;Parent=Msa1112000-mRNA-1
chr7_3 exon 57763091 57763466 57763091 ID=Msa1112000-mRNA-1:exon:12568;Parent=Msa1112000-mRNA-1
chr7_3 five_prime_UTR 57757517 57757697 57757517 ID=Msa1112000-mRNA-1:five_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57757698 57757904 57757698 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57758978 57759362 57758978 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57760726 57760893 57760726 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57762047 57762093 57762047 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57762198 57762226 57762198 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 CDS 57762738 57762828 57762738 ID=Msa1112000-mRNA-1:cds;Parent=Msa1112000-mRNA-1
chr7_3 three_prime_UTR 57762829 57762840 57762829 ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3 three_prime_UTR 57762980 57763062 57762980 ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1
chr7_3 three_prime_UTR 57763091 57763466 57763091 ID=Msa1112000-mRNA-1:three_prime_utr;Parent=Msa1112000-mRNA-1
Gene Sequence

>Msa1112000

ATGGCTTCGATGAGTTTCACCATGGATTCAGTTTCTGTGTTAAACCCTAAACTCAACCACACCCATCTCTCTCATTCTCCGAAGTTTCATCCTTTACTCAAACACCGCAACACCACTTTCAAACTCTCTCTTCCTCGTTATGCCCTCAATCAACGCAGCAAACCGTTAACCCTCGTTTTCGCTGCTGCTACGCCTCAACATGACTCTGATCATGGTGAAGTTGAGGTAGAGAAGGGGAATGATGTTAGTTCTGAGGAGGAATCACAGGAAGCATGGAAGCAGGCTTTGGATACATTCAAGGAACAAGCTTTGAAGCTACAAGGGGTTTCTCAAGAAGCCTATGAAGTGTATTCTAAGAAGGCCATTGTGGTTTTGCAAGATACTTCAGAACAGTTGAAGATACAGGCCGATAAGGCAAGACATGATTTGAGTGTTGTGGCGAAGGAAATCACTGAAGAAGGAAAAGAGTATTTCTCTTCTGCTGCTGAGAATTCACCTGAGGTGAAGGAAATTGTGGAAACTTTTACCTCCCCAGATGATGATCTCAGCAAAGTTTCTGGAGTTCGGGACTTTTATGTTGGTATACCCTATGGTTTGTTACTATCTGCGGGTGGCTTCCTTTCCTTTATGATAACAGGAAGCATTGCAGCAATAAGGTTTGGGGTGATTTTAGGTGGTGTGCTATTGGCTTTAAGCATTTCAAGTCTGAAATCATATAAAAAAGGACAGCCCTCTTCTCTTGCTTTGAAGGGCCAGACAGCTATAGCAGGTATCTTGTTTCTGCGTGAGATCAGCATATTAGGCAGAGGATCAACTTATTTCACTGCTTTGATCAGTGGTGCGGTAGCGGCATTTTATGTCTATAGACTGGTTTTAGAAGGTAAACCACAAAAAGGTTCAAACTTTGAAGGTGAAGCAGGAAACTAG

Protein sequence

>Msa1112000

MASMSFTMDSVSVLNPKLNHTHLSHSPKFHPLLKHRNTTFKLSLPRYALNQRSKPLTLVFAAATPQHDSDHGEVEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYKKGQPSSLALKGQTAIAGILFLREISILGRGSTYFTALISGAVAAFYVYRLVLEGKPQKGSNFEGEAGN*