AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0671070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671070 MtrunA17_Chr7g0224131 76.580 269 36 4 1 245 1 266 5.49e-142 405
Msa0671070 MtrunA17_Chr4g0010361 78.544 261 32 3 1 237 1 261 5.57e-141 402
Msa0671070 MtrunA17_Chr4g0010351 77.395 261 35 2 1 237 1 261 3.02e-139 396
Msa0671070 MtrunA17_Chr4g0010311 75.096 261 41 2 1 237 1 261 9.32e-134 384
Msa0671070 MtrunA17_Chr4g0010331 76.628 261 31 5 1 237 1 255 2.02e-132 380
Msa0671070 MtrunA17_Chr4g0010381 66.667 261 62 3 1 237 1 260 6.65e-113 331
Msa0671070 MtrunA17_Chr3g0125001 61.686 261 68 6 1 237 1 253 6.84e-97 290
Msa0671070 MtrunA17_Chr3g0087221 60.902 266 75 5 1 237 1 266 1.64e-96 290
Msa0671070 MtrunA17_Chr8g0359251 50.000 272 90 9 1 237 1 261 6.88e-74 231
Msa0671070 MtrunA17_Chr4g0010121 50.000 260 86 6 1 230 40 285 4.28e-73 231
Msa0671070 MtrunA17_Chr8g0354371 49.084 273 90 7 1 237 1 260 1.47e-72 228
Msa0671070 MtrunA17_Chr8g0353891 57.209 215 57 6 1 183 1 212 1.64e-71 218
Msa0671070 MtrunA17_Chr4g0053111 49.097 277 91 8 1 237 1 267 1.04e-69 221
Msa0671070 MtrunA17_Chr8g0374911 49.624 266 94 9 1 234 22 279 3.45e-69 220
Msa0671070 MtrunA17_Chr6g0456591 58.049 205 61 5 1 181 15 218 4.24e-69 212
Msa0671070 MtrunA17_Chr4g0053061 49.242 264 90 10 1 230 29 282 7.05e-69 219
Msa0671070 MtrunA17_Chr7g0224121 63.584 173 38 4 23 171 26 197 1.10e-67 207
Msa0671070 MtrunA17_Chr4g0053081 44.280 271 103 7 1 235 1 259 4.12e-65 209
Msa0671070 MtrunA17_Chr8g0374641 47.529 263 89 9 1 230 1 247 8.00e-64 206
Msa0671070 MtrunA17_Chr4g0053091 38.043 276 102 7 1 235 1 248 1.55e-48 166
Msa0671070 MtrunA17_Chr6g0463331 53.378 148 47 4 30 155 14 161 2.01e-38 132
Msa0671070 MtrunA17_Chr3g0134041 37.398 246 109 9 18 229 24 258 4.66e-38 138
Msa0671070 MtrunA17_Chr3g0134071 36.364 264 115 10 16 237 22 274 4.91e-37 136
Msa0671070 MtrunA17_Chr3g0134091 36.111 252 111 10 16 229 21 260 1.31e-34 129
Msa0671070 MtrunA17_Chr3g0134111 34.340 265 126 11 16 243 22 275 9.61e-34 126
Msa0671070 MtrunA17_Chr3g0134121 34.127 252 117 10 16 229 21 261 9.93e-32 121
Msa0671070 MtrunA17_Chr4g0005941 39.423 208 87 7 42 227 57 247 8.26e-29 113
Msa0671070 MtrunA17_Chr7g0224101 82.258 62 11 0 176 237 10 71 1.98e-28 105
Msa0671070 MtrunA17_Chr3g0134061 31.408 277 130 9 3 229 4 270 1.15e-27 110
Msa0671070 MtrunA17_Chr3g0113181 34.951 206 103 6 39 230 60 248 3.82e-25 103
Msa0671070 MtrunA17_Chr5g0436621 35.122 205 97 8 42 229 58 243 1.32e-23 99.0
Msa0671070 MtrunA17_Chr3g0134101 31.600 250 110 10 16 229 38 262 9.80e-21 90.5
Msa0671070 MtrunA17_Chr6g0463321 53.425 73 26 1 165 237 2 66 9.40e-17 75.9
Msa0671070 MtrunA17_Chr6g0467861 37.143 140 73 4 42 169 96 232 7.69e-15 73.6
Msa0671070 MtrunA17_Chr3g0134131 46.296 54 29 0 105 158 89 142 3.60e-11 62.4
Msa0671070 MtrunA17_Chr4g0004691 34.351 131 66 5 40 155 48 173 6.65e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671070 AT3G50300.1 37.918 269 120 11 1 235 1 256 2.66e-41 147
Msa0671070 AT3G50280.1 35.878 262 129 8 1 232 1 253 5.58e-39 140
Msa0671070 AT5G67150.1 36.842 266 124 9 1 230 1 258 2.55e-38 139
Msa0671070 AT5G07850.1 43.333 210 89 10 39 229 64 262 4.97e-36 133
Msa0671070 AT3G50270.1 36.154 260 123 8 6 231 7 257 2.58e-35 131
Msa0671070 AT5G67160.1 34.263 251 124 8 6 229 12 248 3.70e-35 130
Msa0671070 AT5G38130.1 33.969 262 128 9 1 230 21 269 7.52e-32 122
Msa0671070 AT2G39980.1 37.129 202 96 6 42 229 59 243 1.68e-30 118
Msa0671070 AT5G07860.1 36.283 226 107 9 39 243 66 275 3.66e-27 108
Msa0671070 AT5G42830.1 31.939 263 132 11 15 243 21 270 1.66e-26 107
Msa0671070 AT5G01210.1 35.233 193 93 7 56 233 73 248 3.27e-26 106
Msa0671070 AT5G07870.1 35.345 232 99 10 39 237 66 279 3.21e-23 98.2
Msa0671070 AT3G50290.1 40.741 135 72 3 106 239 12 139 7.35e-21 89.4
Msa0671070 AT3G50280.2 39.370 127 68 2 106 232 6 123 3.03e-20 88.2
Msa0671070 AT5G23940.1 31.797 217 129 6 42 243 62 274 9.29e-18 82.4
Msa0671070 AT5G41040.1 28.155 206 125 8 37 228 77 273 1.14e-11 64.7
Msa0671070 AT5G41040.2 28.155 206 125 8 37 228 61 257 1.34e-11 64.3

Find 54 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTCTCAGCCGTTGGATT+TGG 0.276668 4_4:-14069086 None:intergenic
AAAACTTTGTTTATCAAATA+GGG 0.285623 4_4:+14069619 Msa0671070:CDS
ATTGTTTGATCACTTGATTT+TGG 0.339606 4_4:-14068980 None:intergenic
GTGTCTCAGCCGTTGGATTT+GGG 0.349706 4_4:-14069085 None:intergenic
TTCTTGCGGATCAAATTGTT+TGG 0.353011 4_4:-14069763 None:intergenic
GAAACCAACGCTCTAGTGTT+GGG 0.360883 4_4:-14069502 None:intergenic
ATTGGCCGTTGAACACCATT+TGG 0.375515 4_4:-14069524 None:intergenic
GGTACATAGGTATAGGTTCT+AGG 0.388722 4_4:-14069263 None:intergenic
TTTAACCATGTTGTCGTTGA+CGG 0.436978 4_4:+14069404 Msa0671070:CDS
TTGGATTTGGGTTCTACCAC+CGG 0.458096 4_4:-14069073 None:intergenic
AATACGATTTCCTTTCACTT+TGG 0.459710 4_4:+14069544 Msa0671070:CDS
AATTGGAGGTACATAGGTAT+AGG 0.469534 4_4:-14069270 None:intergenic
TTTAACTCACCTTTGGTGCT+CGG 0.470678 4_4:+14069731 Msa0671070:CDS
AAACAATCCATTTGACTCCA+TGG 0.476645 4_4:+14068996 Msa0671070:CDS
AGGCACATCAAAACCATTGT+TGG 0.495948 4_4:+14069334 Msa0671070:CDS
TTCCGTTATTTCAAGACGGC+CGG 0.498398 4_4:-14069145 None:intergenic
TGTGGCATTTCATCAATTCA+CGG 0.502030 4_4:+14069435 Msa0671070:CDS
GGAAACCAACGCTCTAGTGT+TGG 0.511281 4_4:-14069503 None:intergenic
GGAGATCCCATGGAGTCAAA+TGG 0.511534 4_4:-14069003 None:intergenic
TGCCGGCCGTCTTGAAATAA+CGG 0.512312 4_4:+14069143 Msa0671070:CDS
CTAGAGCGTTGGTTTCCAAA+TGG 0.513520 4_4:+14069509 Msa0671070:CDS
GGGTCTTCTTTATCACCATC+CGG 0.514663 4_4:+14069054 Msa0671070:intron
CAACAAAAGAATCACTCTGA+TGG 0.518700 4_4:+14069569 Msa0671070:CDS
CACATCAAAACCATTGTTGG+CGG 0.519877 4_4:+14069337 Msa0671070:CDS
GTGGCATTTCATCAATTCAC+GGG 0.519947 4_4:+14069436 Msa0671070:CDS
GTGAATTGATGAAATGCCAC+AGG 0.531869 4_4:-14069433 None:intergenic
CAAGACGGCCGGCAAGAGGT+TGG 0.533473 4_4:-14069134 None:intergenic
AAAGTGAAAGGAAATCGTAT+TGG 0.539286 4_4:-14069542 None:intergenic
ATTGTTGGCGGTTCAAGTAA+CGG 0.545067 4_4:+14069349 Msa0671070:CDS
ATTTCAAGACGGCCGGCAAG+AGG 0.547420 4_4:-14069138 None:intergenic
AACAATCCATTTGACTCCAT+GGG 0.553051 4_4:+14068997 Msa0671070:CDS
ATAGAGAGTGTCTCAGCCGT+TGG 0.554838 4_4:-14069092 None:intergenic
GGTTTCCAAATGGTGTTCAA+CGG 0.558301 4_4:+14069519 Msa0671070:CDS
AACAAAAGAATCACTCTGAT+GGG 0.558688 4_4:+14069570 Msa0671070:CDS
TCTGTTATATGCAACAATGC+AGG 0.564087 4_4:+14069192 Msa0671070:CDS
AGTAGATAACGGAGATCCCA+TGG 0.564523 4_4:-14069013 None:intergenic
TCTCTCCACCGATACAATCA+AGG 0.566906 4_4:+14068955 Msa0671070:CDS
AAACCAACGCTCTAGTGTTG+GGG 0.569521 4_4:-14069501 None:intergenic
AACGCATCACCGAGCACCAA+AGG 0.581768 4_4:-14069740 None:intergenic
CAAGTAACGGAGCTAGTTGA+CGG 0.586570 4_4:+14069362 Msa0671070:CDS
GTTACTTGAACCGCCAACAA+TGG 0.591268 4_4:-14069347 None:intergenic
TGTGTTCCGTTATTTCAAGA+CGG 0.599596 4_4:-14069149 None:intergenic
TGGTGCCTTGATTGTATCGG+TGG 0.602029 4_4:-14068960 None:intergenic
ATTTGGGTTCTACCACCGGA+TGG 0.606419 4_4:-14069069 None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG 0.612633 4_4:-14069227 None:intergenic
ACTTTCCGTCAACGACAACA+TGG 0.629179 4_4:-14069409 None:intergenic
ATCGGTGGAGAGAACTCGTA+CGG 0.630409 4_4:-14068945 None:intergenic
AACCAACGCTCTAGTGTTGG+GGG 0.632370 4_4:-14069500 None:intergenic
GTGGTAGAACCCAAATCCAA+CGG 0.644473 4_4:+14069076 Msa0671070:CDS
TCTTCTTTATCACCATCCGG+TGG 0.677054 4_4:+14069057 Msa0671070:CDS
ACTGAGGTTAGAAGCTACGA+AGG 0.680362 4_4:+14069314 Msa0671070:intron
TGAATTGATGAAATGCCACA+GGG 0.686392 4_4:-14069432 None:intergenic
GCATATAACAGAATACGAGA+CGG 0.715960 4_4:-14069181 None:intergenic
TCGTTGACGGAAAGTCCCTG+TGG 0.745350 4_4:+14069417 Msa0671070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTTGTTTATCAAAT+AGG + chr4_4:14069618-14069637 Msa0671070:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG + chr4_4:14069619-14069638 Msa0671070:CDS 15.0%
!!! AAAAACTTTGTTTATCAAAT+AGG + chr4_4:14069618-14069637 Msa0671070:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG + chr4_4:14069619-14069638 Msa0671070:CDS 15.0%
!! TTAAAAATCAATGAAGAGAT+TGG + chr4_4:14069680-14069699 Msa0671070:CDS 20.0%
!! TTAAAAATCAATGAAGAGAT+TGG + chr4_4:14069680-14069699 Msa0671070:CDS 20.0%
!! ATTGTTTGATCACTTGATTT+TGG - chr4_4:14068983-14069002 None:intergenic 25.0%
! AAAAATGAATCAACAATTGG+AGG - chr4_4:14069287-14069306 None:intergenic 25.0%
!! ATTGTTTGATCACTTGATTT+TGG - chr4_4:14068983-14069002 None:intergenic 25.0%
! AAAAATGAATCAACAATTGG+AGG - chr4_4:14069287-14069306 None:intergenic 25.0%
TGGTTGAAACAAGTAGATAA+CGG - chr4_4:14069027-14069046 None:intergenic 30.0%
ACTTGTTTCAACCAACAAAA+AGG + chr4_4:14069033-14069052 Msa0671070:intron 30.0%
CTTGTTTCAACCAACAAAAA+GGG + chr4_4:14069034-14069053 Msa0671070:intron 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG - chr4_4:14069047-14069066 None:intergenic 30.0%
AAGAGGTTGGAAAAAAGAAA+GGG - chr4_4:14069124-14069143 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG - chr4_4:14069290-14069309 None:intergenic 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG + chr4_4:14069298-14069317 Msa0671070:intron 30.0%
AAAGTGAAAGGAAATCGTAT+TGG - chr4_4:14069545-14069564 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG + chr4_4:14069544-14069563 Msa0671070:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG + chr4_4:14069570-14069589 Msa0671070:CDS 30.0%
TGGTTGAAACAAGTAGATAA+CGG - chr4_4:14069027-14069046 None:intergenic 30.0%
ACTTGTTTCAACCAACAAAA+AGG + chr4_4:14069033-14069052 Msa0671070:intron 30.0%
CTTGTTTCAACCAACAAAAA+GGG + chr4_4:14069034-14069053 Msa0671070:intron 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG - chr4_4:14069047-14069066 None:intergenic 30.0%
AAGAGGTTGGAAAAAAGAAA+GGG - chr4_4:14069124-14069143 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG - chr4_4:14069290-14069309 None:intergenic 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG + chr4_4:14069298-14069317 Msa0671070:intron 30.0%
AAAGTGAAAGGAAATCGTAT+TGG - chr4_4:14069545-14069564 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG + chr4_4:14069544-14069563 Msa0671070:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG + chr4_4:14069570-14069589 Msa0671070:CDS 30.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG - chr4_4:14068966-14068985 None:intergenic 35.0%
AAACAATCCATTTGACTCCA+TGG + chr4_4:14068996-14069015 Msa0671070:CDS 35.0%
AACAATCCATTTGACTCCAT+GGG + chr4_4:14068997-14069016 Msa0671070:CDS 35.0%
CAAGAGGTTGGAAAAAAGAA+AGG - chr4_4:14069125-14069144 None:intergenic 35.0%
! TGTGTTCCGTTATTTCAAGA+CGG - chr4_4:14069152-14069171 None:intergenic 35.0%
GCATATAACAGAATACGAGA+CGG - chr4_4:14069184-14069203 None:intergenic 35.0%
TCTGTTATATGCAACAATGC+AGG + chr4_4:14069192-14069211 Msa0671070:CDS 35.0%
! AATTGGAGGTACATAGGTAT+AGG - chr4_4:14069273-14069292 None:intergenic 35.0%
! ATCAACAATTGGAGGTACAT+AGG - chr4_4:14069279-14069298 None:intergenic 35.0%
! CTAGTTGACGGTATTTTCAT+TGG + chr4_4:14069374-14069393 Msa0671070:CDS 35.0%
TTTAACCATGTTGTCGTTGA+CGG + chr4_4:14069404-14069423 Msa0671070:CDS 35.0%
TGAATTGATGAAATGCCACA+GGG - chr4_4:14069435-14069454 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG + chr4_4:14069435-14069454 Msa0671070:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG - chr4_4:14069557-14069576 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG + chr4_4:14069569-14069588 Msa0671070:CDS 35.0%
!! AAGCACTTTTAACTCACCTT+TGG + chr4_4:14069724-14069743 Msa0671070:CDS 35.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG - chr4_4:14068966-14068985 None:intergenic 35.0%
AAACAATCCATTTGACTCCA+TGG + chr4_4:14068996-14069015 Msa0671070:CDS 35.0%
AACAATCCATTTGACTCCAT+GGG + chr4_4:14068997-14069016 Msa0671070:CDS 35.0%
CAAGAGGTTGGAAAAAAGAA+AGG - chr4_4:14069125-14069144 None:intergenic 35.0%
! TGTGTTCCGTTATTTCAAGA+CGG - chr4_4:14069152-14069171 None:intergenic 35.0%
GCATATAACAGAATACGAGA+CGG - chr4_4:14069184-14069203 None:intergenic 35.0%
TCTGTTATATGCAACAATGC+AGG + chr4_4:14069192-14069211 Msa0671070:CDS 35.0%
! AATTGGAGGTACATAGGTAT+AGG - chr4_4:14069273-14069292 None:intergenic 35.0%
! ATCAACAATTGGAGGTACAT+AGG - chr4_4:14069279-14069298 None:intergenic 35.0%
! CTAGTTGACGGTATTTTCAT+TGG + chr4_4:14069374-14069393 Msa0671070:CDS 35.0%
TTTAACCATGTTGTCGTTGA+CGG + chr4_4:14069404-14069423 Msa0671070:CDS 35.0%
TGAATTGATGAAATGCCACA+GGG - chr4_4:14069435-14069454 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG + chr4_4:14069435-14069454 Msa0671070:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG - chr4_4:14069557-14069576 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG + chr4_4:14069569-14069588 Msa0671070:CDS 35.0%
!! AAGCACTTTTAACTCACCTT+TGG + chr4_4:14069724-14069743 Msa0671070:CDS 35.0%
TTGGAAAAAAGAAAGGGCAG+AGG - chr4_4:14069118-14069137 None:intergenic 40.0%
!!! TCTTTTTTCCAACCTCTTGC+CGG + chr4_4:14069126-14069145 Msa0671070:CDS 40.0%
GGTACATAGGTATAGGTTCT+AGG - chr4_4:14069266-14069285 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG + chr4_4:14069334-14069353 Msa0671070:CDS 40.0%
CACATCAAAACCATTGTTGG+CGG + chr4_4:14069337-14069356 Msa0671070:CDS 40.0%
ATTGTTGGCGGTTCAAGTAA+CGG + chr4_4:14069349-14069368 Msa0671070:CDS 40.0%
GTGAATTGATGAAATGCCAC+AGG - chr4_4:14069436-14069455 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG + chr4_4:14069436-14069455 Msa0671070:CDS 40.0%
GGTTTCCAAATGGTGTTCAA+CGG + chr4_4:14069519-14069538 Msa0671070:CDS 40.0%
!! TTTAACTCACCTTTGGTGCT+CGG + chr4_4:14069731-14069750 Msa0671070:CDS 40.0%
TTGGAAAAAAGAAAGGGCAG+AGG - chr4_4:14069118-14069137 None:intergenic 40.0%
!!! TCTTTTTTCCAACCTCTTGC+CGG + chr4_4:14069126-14069145 Msa0671070:CDS 40.0%
GGTACATAGGTATAGGTTCT+AGG - chr4_4:14069266-14069285 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG + chr4_4:14069334-14069353 Msa0671070:CDS 40.0%
CACATCAAAACCATTGTTGG+CGG + chr4_4:14069337-14069356 Msa0671070:CDS 40.0%
ATTGTTGGCGGTTCAAGTAA+CGG + chr4_4:14069349-14069368 Msa0671070:CDS 40.0%
GTGAATTGATGAAATGCCAC+AGG - chr4_4:14069436-14069455 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG + chr4_4:14069436-14069455 Msa0671070:CDS 40.0%
GGTTTCCAAATGGTGTTCAA+CGG + chr4_4:14069519-14069538 Msa0671070:CDS 40.0%
!! TTTAACTCACCTTTGGTGCT+CGG + chr4_4:14069731-14069750 Msa0671070:CDS 40.0%
TCTCTCCACCGATACAATCA+AGG + chr4_4:14068955-14068974 Msa0671070:CDS 45.0%
!! AGTAGATAACGGAGATCCCA+TGG - chr4_4:14069016-14069035 None:intergenic 45.0%
GGGTCTTCTTTATCACCATC+CGG + chr4_4:14069054-14069073 Msa0671070:intron 45.0%
TCTTCTTTATCACCATCCGG+TGG + chr4_4:14069057-14069076 Msa0671070:CDS 45.0%
! TTGGATTTGGGTTCTACCAC+CGG - chr4_4:14069076-14069095 None:intergenic 45.0%
GTGGTAGAACCCAAATCCAA+CGG + chr4_4:14069076-14069095 Msa0671070:CDS 45.0%
! TTCCGTTATTTCAAGACGGC+CGG - chr4_4:14069148-14069167 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG - chr4_4:14069230-14069249 None:intergenic 45.0%
ACTGAGGTTAGAAGCTACGA+AGG + chr4_4:14069314-14069333 Msa0671070:intron 45.0%
GTTACTTGAACCGCCAACAA+TGG - chr4_4:14069350-14069369 None:intergenic 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG + chr4_4:14069362-14069381 Msa0671070:CDS 45.0%
ACTTTCCGTCAACGACAACA+TGG - chr4_4:14069412-14069431 None:intergenic 45.0%
AAACCAACGCTCTAGTGTTG+GGG - chr4_4:14069504-14069523 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG - chr4_4:14069505-14069524 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG + chr4_4:14069509-14069528 Msa0671070:CDS 45.0%
ATTGGCCGTTGAACACCATT+TGG - chr4_4:14069527-14069546 None:intergenic 45.0%
TCTCTCCACCGATACAATCA+AGG + chr4_4:14068955-14068974 Msa0671070:CDS 45.0%
!! AGTAGATAACGGAGATCCCA+TGG - chr4_4:14069016-14069035 None:intergenic 45.0%
GGGTCTTCTTTATCACCATC+CGG + chr4_4:14069054-14069073 Msa0671070:intron 45.0%
TCTTCTTTATCACCATCCGG+TGG + chr4_4:14069057-14069076 Msa0671070:CDS 45.0%
! TTGGATTTGGGTTCTACCAC+CGG - chr4_4:14069076-14069095 None:intergenic 45.0%
GTGGTAGAACCCAAATCCAA+CGG + chr4_4:14069076-14069095 Msa0671070:CDS 45.0%
! TTCCGTTATTTCAAGACGGC+CGG - chr4_4:14069148-14069167 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG - chr4_4:14069230-14069249 None:intergenic 45.0%
ACTGAGGTTAGAAGCTACGA+AGG + chr4_4:14069314-14069333 Msa0671070:intron 45.0%
GTTACTTGAACCGCCAACAA+TGG - chr4_4:14069350-14069369 None:intergenic 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG + chr4_4:14069362-14069381 Msa0671070:CDS 45.0%
ACTTTCCGTCAACGACAACA+TGG - chr4_4:14069412-14069431 None:intergenic 45.0%
AAACCAACGCTCTAGTGTTG+GGG - chr4_4:14069504-14069523 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG - chr4_4:14069505-14069524 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG + chr4_4:14069509-14069528 Msa0671070:CDS 45.0%
ATTGGCCGTTGAACACCATT+TGG - chr4_4:14069527-14069546 None:intergenic 45.0%
ATCGGTGGAGAGAACTCGTA+CGG - chr4_4:14068948-14068967 None:intergenic 50.0%
TGGTGCCTTGATTGTATCGG+TGG - chr4_4:14068963-14068982 None:intergenic 50.0%
GGAGATCCCATGGAGTCAAA+TGG - chr4_4:14069006-14069025 None:intergenic 50.0%
! ATTTGGGTTCTACCACCGGA+TGG - chr4_4:14069072-14069091 None:intergenic 50.0%
GTGTCTCAGCCGTTGGATTT+GGG - chr4_4:14069088-14069107 None:intergenic 50.0%
AGTGTCTCAGCCGTTGGATT+TGG - chr4_4:14069089-14069108 None:intergenic 50.0%
!! ATAGAGAGTGTCTCAGCCGT+TGG - chr4_4:14069095-14069114 None:intergenic 50.0%
TGCCGGCCGTCTTGAAATAA+CGG + chr4_4:14069143-14069162 Msa0671070:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG - chr4_4:14069503-14069522 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG - chr4_4:14069506-14069525 None:intergenic 50.0%
ATCGGTGGAGAGAACTCGTA+CGG - chr4_4:14068948-14068967 None:intergenic 50.0%
TGGTGCCTTGATTGTATCGG+TGG - chr4_4:14068963-14068982 None:intergenic 50.0%
GGAGATCCCATGGAGTCAAA+TGG - chr4_4:14069006-14069025 None:intergenic 50.0%
! ATTTGGGTTCTACCACCGGA+TGG - chr4_4:14069072-14069091 None:intergenic 50.0%
GTGTCTCAGCCGTTGGATTT+GGG - chr4_4:14069088-14069107 None:intergenic 50.0%
AGTGTCTCAGCCGTTGGATT+TGG - chr4_4:14069089-14069108 None:intergenic 50.0%
!! ATAGAGAGTGTCTCAGCCGT+TGG - chr4_4:14069095-14069114 None:intergenic 50.0%
TGCCGGCCGTCTTGAAATAA+CGG + chr4_4:14069143-14069162 Msa0671070:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG - chr4_4:14069503-14069522 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG - chr4_4:14069506-14069525 None:intergenic 50.0%
ATTTCAAGACGGCCGGCAAG+AGG - chr4_4:14069141-14069160 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG + chr4_4:14069417-14069436 Msa0671070:CDS 55.0%
AACCCCCAACACTAGAGCGT+TGG + chr4_4:14069498-14069517 Msa0671070:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG - chr4_4:14069743-14069762 None:intergenic 55.0%
ATTTCAAGACGGCCGGCAAG+AGG - chr4_4:14069141-14069160 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG + chr4_4:14069417-14069436 Msa0671070:CDS 55.0%
AACCCCCAACACTAGAGCGT+TGG + chr4_4:14069498-14069517 Msa0671070:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG - chr4_4:14069743-14069762 None:intergenic 55.0%
CAAGACGGCCGGCAAGAGGT+TGG - chr4_4:14069137-14069156 None:intergenic 65.0%
CAAGACGGCCGGCAAGAGGT+TGG - chr4_4:14069137-14069156 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 14068938 14069775 14068938 ID=Msa0671070;Name=Msa0671070
chr4_4 mRNA 14068938 14069775 14068938 ID=Msa0671070-mRNA-1;Parent=Msa0671070;Name=Msa0671070-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0|0|3|0|254
chr4_4 exon 14068938 14069025 14068938 ID=Msa0671070-mRNA-1:exon:4298;Parent=Msa0671070-mRNA-1
chr4_4 exon 14069055 14069280 14069055 ID=Msa0671070-mRNA-1:exon:4299;Parent=Msa0671070-mRNA-1
chr4_4 exon 14069325 14069775 14069325 ID=Msa0671070-mRNA-1:exon:4300;Parent=Msa0671070-mRNA-1
chr4_4 CDS 14068938 14069025 14068938 ID=Msa0671070-mRNA-1:cds;Parent=Msa0671070-mRNA-1
chr4_4 CDS 14069055 14069280 14069055 ID=Msa0671070-mRNA-1:cds;Parent=Msa0671070-mRNA-1
chr4_4 CDS 14069325 14069775 14069325 ID=Msa0671070-mRNA-1:cds;Parent=Msa0671070-mRNA-1
Gene Sequence

>Msa0671070

ATGGGAACCGTACGAGTTCTCTCCACCGATACAATCAAGGCACCAAAATCAAGTGATCAAACAATCCATTTGACTCCATGGGATCTCCGGTCTTCTTTATCACCATCCGGTGGTAGAACCCAAATCCAACGGCTGAGACACTCTCTATCCTCTGCCCTTTCTTTTTTCCAACCTCTTGCCGGCCGTCTTGAAATAACGGAACACAATGACAACACCGTCTCGTATTCTGTTATATGCAACAATGCAGGTGTTCTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCTATACCTATAAGCTACGAAGGCACATCAAAACCATTGTTGGCGGTTCAAGTAACGGAGCTAGTTGACGGTATTTTCATTGGTTGTTCATTTAACCATGTTGTCGTTGACGGAAAGTCCCTGTGGCATTTCATCAATTCACGGGCTGAAATATCACGTAGTTGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTGTTCAACGGCCAATACGATTTCCTTTCACTTTGGAGCAACAAAAGAATCACTCTGATGGGTTGAGTTTTTCGTCGTTTAATGATGAAAAACTTTGTTTATCAAATAGGGTATTTCATTTCACAAAAGAGAAAATTGTACAGCTGAAATTAAAAATCAATGAAGAGATTGGTGTCATCAATATCTTCTCTACAAGCACTTTTAACTCACCTTTGGTGCTCGGTGATGCGTTCCAAACAATTTGA

Protein sequence

>Msa0671070

MGTVRVLSTDTIKAPKSSDQTIHLTPWDLRSSLSPSGGRTQIQRLRHSLSSALSFFQPLAGRLEITEHNDNTVSYSVICNNAGVLFIHAAAENTCVADILEPIPISYEGTSKPLLAVQVTELVDGIFIGCSFNHVVVDGKSLWHFINSRAEISRSCCHHQISKPPTLERWFPNGVQRPIRFPFTLEQQKNHSDGLSFSSFNDEKLCLSNRVFHFTKEKIVQLKLKINEEIGVINIFSTSTFNSPLVLGDAFQTI*