AlfalfaGEDB | Msa0592400

M. sativa cultivar zhongmu-4 / Msa0592400

KEGG: K13065
GO: -
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592400	XP_003605008.1	82.375	261	26	3	1	241	1	261	8.11e-147	428

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592400	sp\|Q9SND9\|Y3028_ARATH	37.405	262	129	8	1	236	1	253	4.77e-42	152

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0592400	0.846112	2.664366e-59	-8.615850e-47
Msa0002110	Msa0592400	0.813403	2.605304e-51	-8.615850e-47
Msa0002690	Msa0592400	0.835198	1.929328e-56	-8.615850e-47
Msa0002700	Msa0592400	0.831991	1.219158e-55	-8.615850e-47
Msa0004180	Msa0592400	0.828644	8.017668e-55	-8.615850e-47
Msa0007570	Msa0592400	0.819626	1.051985e-52	-8.615850e-47
Msa0007810	Msa0592400	0.857979	1.128615e-62	-8.615850e-47
Msa0009530	Msa0592400	0.810528	1.102275e-50	-8.615850e-47
Msa0011060	Msa0592400	0.848303	6.677571e-60	-8.615850e-47
Msa0011100	Msa0592400	0.835401	1.714699e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592400	MtrunA17_Chr4g0010361	82.375	261	26	3	1	241	1	261	7.46e-151	428
Msa0592400	MtrunA17_Chr7g0224131	79.182	269	33	4	1	249	1	266	6.63e-149	423
Msa0592400	MtrunA17_Chr4g0010351	80.843	261	30	2	1	241	1	261	1.78e-148	419
Msa0592400	MtrunA17_Chr4g0010311	78.927	261	35	2	1	241	1	261	5.46e-144	410
Msa0592400	MtrunA17_Chr4g0010331	79.693	261	27	4	1	241	1	255	7.41e-142	405
Msa0592400	MtrunA17_Chr4g0010381	69.349	261	59	3	1	241	1	260	4.16e-121	352
Msa0592400	MtrunA17_Chr3g0125001	65.517	261	62	6	1	241	1	253	9.40e-108	318
Msa0592400	MtrunA17_Chr3g0087221	63.910	266	71	5	1	241	1	266	1.20e-105	313
Msa0592400	MtrunA17_Chr8g0359251	51.481	270	93	8	1	241	1	261	2.39e-79	246
Msa0592400	MtrunA17_Chr8g0354371	51.111	270	93	7	1	241	1	260	9.14e-79	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592400	AT3G50300.1	38.662	269	122	11	1	239	1	256	2.00e-44	155
Msa0592400	AT3G50280.1	37.405	262	129	8	1	236	1	253	4.85e-43	152
Msa0592400	AT5G67150.1	38.346	266	124	9	1	234	1	258	1.09e-42	151
Msa0592400	AT3G50270.1	37.121	264	127	9	2	235	3	257	1.23e-38	140
Msa0592400	AT5G07850.1	40.476	252	106	12	15	233	22	262	6.53e-38	138
Msa0592400	AT5G67160.1	34.902	255	121	8	6	233	12	248	8.70e-38	137
Msa0592400	AT5G38130.1	35.496	262	128	9	1	234	21	269	1.38e-35	132
Msa0592400	AT5G42830.1	33.460	263	132	11	15	247	21	270	6.62e-32	122
Msa0592400	AT2G39980.1	37.129	202	96	6	46	233	59	243	1.78e-30	118
Msa0592400	AT5G07860.1	33.451	284	133	13	4	247	8	275	3.96e-29	114

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Find 56 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGTTTATCAAATA+GGG	0.285623	4_2:-17748582	Msa0592400:CDS
AAACAATCCATTTGACTCCA+TGG	0.476645	4_2:-17749206	Msa0592400:CDS
AAACCAACGCTCTAGTGTTG+GGG	0.569521	4_2:+17748700	None:intergenic
AAAGTGAAAGGAAATCGTAT+TGG	0.539286	4_2:+17748659	None:intergenic
AACAAAAGAATCACTCTGAT+GGG	0.558688	4_2:-17748631	Msa0592400:CDS
AACAATCCATTTGACTCCAT+GGG	0.553051	4_2:-17749205	Msa0592400:CDS
AACCAACGCTCTAGTGTTGG+GGG	0.632370	4_2:+17748701	None:intergenic
AACGCATCACCGAGCACCAA+AGG	0.581768	4_2:+17748461	None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG	0.612633	4_2:+17748974	None:intergenic
AATACGATTTCCTTTCACTT+TGG	0.459710	4_2:-17748657	Msa0592400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTTGAAACAAGTAGATAA+CGG	+	chr4_2:17748537-17748556	None:intergenic	30.0%
ACTTGTTTCAACCAACAAAA+AGG	-	chr4_2:17748543-17748562	Msa0592400:CDS	30.0%
CTTGTTTCAACCAACAAAAA+GGG	-	chr4_2:17748544-17748563	Msa0592400:CDS	30.0%
AAGAGGTTGGAAAAAAGAAA+GGG	+	chr4_2:17748635-17748654	None:intergenic	30.0%
GCGAAAAATGAATCAACAAT+TGG	+	chr4_2:17748801-17748820	None:intergenic	30.0%
AAAGTGAAAGGAAATCGTAT+TGG	+	chr4_2:17749056-17749075	None:intergenic	30.0%
AATACGATTTCCTTTCACTT+TGG	-	chr4_2:17749055-17749074	Msa0592400:CDS	30.0%
AACAAAAGAATCACTCTGAT+GGG	-	chr4_2:17749081-17749100	Msa0592400:CDS	30.0%
TGGTTGAAACAAGTAGATAA+CGG	+	chr4_2:17748537-17748556	None:intergenic	30.0%
ACTTGTTTCAACCAACAAAA+AGG	-	chr4_2:17748543-17748562	Msa0592400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	17748448	17749286	17748448	ID=Msa0592400;Name=Msa0592400
chr4_2	mRNA	17748448	17749286	17748448	ID=Msa0592400-mRNA-1;Parent=Msa0592400;Name=Msa0592400-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|1\|0\|0\|3\|0\|258
chr4_2	exon	17749188	17749286	17749188	ID=Msa0592400-mRNA-1:exon:5113;Parent=Msa0592400-mRNA-1
chr4_2	exon	17748943	17749169	17748943	ID=Msa0592400-mRNA-1:exon:5112;Parent=Msa0592400-mRNA-1
chr4_2	exon	17748448	17748898	17748448	ID=Msa0592400-mRNA-1:exon:5111;Parent=Msa0592400-mRNA-1
chr4_2	CDS	17749188	17749286	17749188	ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1
chr4_2	CDS	17748943	17749169	17748943	ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1
chr4_2	CDS	17748448	17748898	17748448	ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1

Gene Sequence

>Msa0592400

ATGGGAACCGTCCGAGTTCTTTCCACCGATACAATCAAGGCACCAAAATCAAGTGATCAAACAATCCATTTGACTCCATGGGATCTCCGTTATCTACTTGGTCTTCTTTATCACCATCCGGTGGTAGAAACCCAAATCCAACGGCTGAGACACTCTCTATCCTCTGCCCTTTCTTTTTTCCAACCTCTTGCCGGCCGTCTTGAAATAACGGAACACAATGACAACACCGTCTCGTATTCTGTTATATGCAACAATGCAGGTGTTCTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCTATACCTATAAGCTACGAAGGCACATCAAAACCATTGTTGGCGGTTCAAGTAACGGAGCTAGTTGACGGTATTTTCATTGGTTGTTCATTTAACCATGTTGTCGTTGACGGAAAGTCCCTGTGGCATTTCATCAATTCACGGGCTGAAATATCACGTAGTTGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTGTTCAACGGCCAATACGATTTCCTTTCACTTTGGAGCAACAAAAGAATCACTCTGATGGGTTGAGTTTTTCGTCGTTTAATGATGAAAAACTTTGTTTATCAAATAGGGTATTTCATTTCACAAAAGAGAAAATTGTACAGCTGAAATTAAAAATCAATGAAGAGATTGGTGTCATCAATATCTTCTCTACAAGCACTTTTAACTCACCTTTGGTGCTCGGTGATGCGTTCCAAACAATTTGA

Protein sequence

>Msa0592400

MGTVRVLSTDTIKAPKSSDQTIHLTPWDLRYLLGLLYHHPVVETQIQRLRHSLSSALSFFQPLAGRLEITEHNDNTVSYSVICNNAGVLFIHAAAENTCVADILEPIPISYEGTSKPLLAVQVTELVDGIFIGCSFNHVVVDGKSLWHFINSRAEISRSCCHHQISKPPTLERWFPNGVQRPIRFPFTLEQQKNHSDGLSFSSFNDEKLCLSNRVFHFTKEKIVQLKLKINEEIGVINIFSTSTFNSPLVLGDAFQTI*