AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0592400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0592400 MtrunA17_Chr4g0010361 82.375 261 26 3 1 241 1 261 7.46e-151 428
Msa0592400 MtrunA17_Chr7g0224131 79.182 269 33 4 1 249 1 266 6.63e-149 423
Msa0592400 MtrunA17_Chr4g0010351 80.843 261 30 2 1 241 1 261 1.78e-148 419
Msa0592400 MtrunA17_Chr4g0010311 78.927 261 35 2 1 241 1 261 5.46e-144 410
Msa0592400 MtrunA17_Chr4g0010331 79.693 261 27 4 1 241 1 255 7.41e-142 405
Msa0592400 MtrunA17_Chr4g0010381 69.349 261 59 3 1 241 1 260 4.16e-121 352
Msa0592400 MtrunA17_Chr3g0125001 65.517 261 62 6 1 241 1 253 9.40e-108 318
Msa0592400 MtrunA17_Chr3g0087221 63.910 266 71 5 1 241 1 266 1.20e-105 313
Msa0592400 MtrunA17_Chr8g0359251 51.481 270 93 8 1 241 1 261 2.39e-79 246
Msa0592400 MtrunA17_Chr8g0354371 51.111 270 93 7 1 241 1 260 9.14e-79 244
Msa0592400 MtrunA17_Chr8g0353891 60.563 213 57 6 1 187 1 212 9.49e-79 236
Msa0592400 MtrunA17_Chr4g0010121 51.341 261 85 7 1 234 40 285 1.11e-77 243
Msa0592400 MtrunA17_Chr6g0456591 60.000 205 61 4 1 185 15 218 1.61e-76 231
Msa0592400 MtrunA17_Chr8g0374911 51.311 267 92 9 1 238 22 279 4.45e-74 233
Msa0592400 MtrunA17_Chr4g0053061 50.929 269 90 10 1 238 29 286 5.65e-74 233
Msa0592400 MtrunA17_Chr7g0224121 67.630 173 35 4 23 175 26 197 9.19e-74 223
Msa0592400 MtrunA17_Chr4g0053111 50.542 277 91 10 1 241 1 267 2.90e-71 225
Msa0592400 MtrunA17_Chr4g0053081 45.756 271 103 8 1 239 1 259 5.32e-70 222
Msa0592400 MtrunA17_Chr8g0374641 49.242 264 87 10 1 234 1 247 2.38e-67 215
Msa0592400 MtrunA17_Chr4g0053091 40.580 276 99 9 1 239 1 248 3.46e-52 175
Msa0592400 MtrunA17_Chr3g0134041 38.618 246 110 10 18 233 24 258 1.65e-40 145
Msa0592400 MtrunA17_Chr3g0134071 37.879 264 115 11 16 241 22 274 1.62e-39 143
Msa0592400 MtrunA17_Chr3g0134091 37.052 251 114 9 16 233 21 260 6.38e-38 138
Msa0592400 MtrunA17_Chr6g0463331 55.224 134 38 4 48 159 28 161 2.34e-36 127
Msa0592400 MtrunA17_Chr3g0134121 35.714 252 117 10 16 233 21 261 1.69e-35 132
Msa0592400 MtrunA17_Chr3g0134111 34.717 265 129 10 16 247 22 275 8.28e-35 129
Msa0592400 MtrunA17_Chr3g0134061 32.491 277 131 10 3 233 4 270 1.85e-29 115
Msa0592400 MtrunA17_Chr4g0005941 37.805 246 106 9 16 231 19 247 4.71e-29 114
Msa0592400 MtrunA17_Chr7g0224101 82.258 62 11 0 180 241 10 71 1.89e-28 105
Msa0592400 MtrunA17_Chr3g0113181 34.562 217 109 7 34 234 49 248 2.16e-25 103
Msa0592400 MtrunA17_Chr3g0134101 32.800 250 111 10 16 233 38 262 7.61e-24 99.8
Msa0592400 MtrunA17_Chr5g0436621 35.122 205 97 8 46 233 58 243 1.14e-23 99.4
Msa0592400 MtrunA17_Chr6g0463321 53.425 73 26 1 169 241 2 66 9.09e-17 75.9
Msa0592400 MtrunA17_Chr6g0467861 33.158 190 103 7 4 173 47 232 3.15e-16 77.8
Msa0592400 MtrunA17_Chr1g0165661 32.886 149 80 4 49 183 64 206 4.32e-13 68.6
Msa0592400 MtrunA17_Chr1g0191081 31.690 142 76 6 46 174 70 203 1.30e-12 67.0
Msa0592400 MtrunA17_Chr7g0273731 29.878 164 90 6 29 173 123 280 7.69e-12 64.7
Msa0592400 MtrunA17_Chr3g0134131 46.296 54 29 0 109 162 89 142 4.30e-11 62.0
Msa0592400 MtrunA17_Chr4g0004691 34.351 131 66 5 44 159 48 173 6.77e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0592400 AT3G50300.1 38.662 269 122 11 1 239 1 256 2.00e-44 155
Msa0592400 AT3G50280.1 37.405 262 129 8 1 236 1 253 4.85e-43 152
Msa0592400 AT5G67150.1 38.346 266 124 9 1 234 1 258 1.09e-42 151
Msa0592400 AT3G50270.1 37.121 264 127 9 2 235 3 257 1.23e-38 140
Msa0592400 AT5G07850.1 40.476 252 106 12 15 233 22 262 6.53e-38 138
Msa0592400 AT5G67160.1 34.902 255 121 8 6 233 12 248 8.70e-38 137
Msa0592400 AT5G38130.1 35.496 262 128 9 1 234 21 269 1.38e-35 132
Msa0592400 AT5G42830.1 33.460 263 132 11 15 247 21 270 6.62e-32 122
Msa0592400 AT2G39980.1 37.129 202 96 6 46 233 59 243 1.78e-30 118
Msa0592400 AT5G07860.1 33.451 284 133 13 4 247 8 275 3.96e-29 114
Msa0592400 AT5G01210.1 35.233 193 93 7 60 237 73 248 4.03e-26 106
Msa0592400 AT5G07870.1 33.103 290 124 14 4 241 8 279 3.13e-25 103
Msa0592400 AT3G50290.1 40.909 132 70 3 113 243 15 139 7.84e-21 89.4
Msa0592400 AT3G50280.2 39.370 127 68 2 110 236 6 123 2.72e-20 88.6
Msa0592400 AT5G23940.1 30.072 276 157 10 4 247 3 274 8.90e-20 88.6
Msa0592400 AT5G41040.2 28.431 204 123 8 43 232 63 257 2.14e-11 63.9
Msa0592400 AT5G41040.1 28.431 204 123 8 43 232 79 273 2.25e-11 63.9

Find 56 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTCTCAGCCGTTGGATT+TGG 0.276668 4_2:+17749115 None:intergenic
AAAACTTTGTTTATCAAATA+GGG 0.285623 4_2:-17748582 Msa0592400:CDS
ATTGTTTGATCACTTGATTT+TGG 0.339606 4_2:+17749222 None:intergenic
GTGTCTCAGCCGTTGGATTT+GGG 0.349706 4_2:+17749116 None:intergenic
TTCTTGCGGATCAAATTGTT+TGG 0.353011 4_2:+17748438 None:intergenic
GAAACCAACGCTCTAGTGTT+GGG 0.360883 4_2:+17748699 None:intergenic
ATTGGCCGTTGAACACCATT+TGG 0.375515 4_2:+17748677 None:intergenic
GGTACATAGGTATAGGTTCT+AGG 0.388722 4_2:+17748938 None:intergenic
TTTAACCATGTTGTCGTTGA+CGG 0.436978 4_2:-17748797 Msa0592400:CDS
AATACGATTTCCTTTCACTT+TGG 0.459710 4_2:-17748657 Msa0592400:CDS
TGGATTTGGGTTTCTACCAC+CGG 0.460917 4_2:+17749129 None:intergenic
AATTGGAGGTACATAGGTAT+AGG 0.469534 4_2:+17748931 None:intergenic
TTTAACTCACCTTTGGTGCT+CGG 0.470678 4_2:-17748470 Msa0592400:CDS
AAACAATCCATTTGACTCCA+TGG 0.476645 4_2:-17749206 Msa0592400:CDS
AGGCACATCAAAACCATTGT+TGG 0.495948 4_2:-17748867 Msa0592400:CDS
TTCCGTTATTTCAAGACGGC+CGG 0.498398 4_2:+17749056 None:intergenic
TGTGGCATTTCATCAATTCA+CGG 0.502030 4_2:-17748766 Msa0592400:CDS
TCTTTCCACCGATACAATCA+AGG 0.509277 4_2:-17749247 Msa0592400:CDS
GGAAACCAACGCTCTAGTGT+TGG 0.511281 4_2:+17748698 None:intergenic
GGAGATCCCATGGAGTCAAA+TGG 0.511534 4_2:+17749199 None:intergenic
TGCCGGCCGTCTTGAAATAA+CGG 0.512312 4_2:-17749058 Msa0592400:CDS
CTAGAGCGTTGGTTTCCAAA+TGG 0.513520 4_2:-17748692 Msa0592400:CDS
GGGTCTTCTTTATCACCATC+CGG 0.514663 4_2:-17749148 Msa0592400:CDS
CAACAAAAGAATCACTCTGA+TGG 0.518700 4_2:-17748632 Msa0592400:CDS
CACATCAAAACCATTGTTGG+CGG 0.519877 4_2:-17748864 Msa0592400:CDS
GTGGCATTTCATCAATTCAC+GGG 0.519947 4_2:-17748765 Msa0592400:CDS
GTGAATTGATGAAATGCCAC+AGG 0.531869 4_2:+17748768 None:intergenic
CAAGACGGCCGGCAAGAGGT+TGG 0.533473 4_2:+17749067 None:intergenic
AAAGTGAAAGGAAATCGTAT+TGG 0.539286 4_2:+17748659 None:intergenic
ATTGTTGGCGGTTCAAGTAA+CGG 0.545067 4_2:-17748852 Msa0592400:CDS
ATTTCAAGACGGCCGGCAAG+AGG 0.547420 4_2:+17749063 None:intergenic
AACAATCCATTTGACTCCAT+GGG 0.553051 4_2:-17749205 Msa0592400:CDS
ATAGAGAGTGTCTCAGCCGT+TGG 0.554838 4_2:+17749109 None:intergenic
GGTTTCCAAATGGTGTTCAA+CGG 0.558301 4_2:-17748682 Msa0592400:CDS
AACAAAAGAATCACTCTGAT+GGG 0.558688 4_2:-17748631 Msa0592400:CDS
TGGTTGAAACAAGTAGATAA+CGG 0.562482 4_2:+17749178 None:intergenic
TCTGTTATATGCAACAATGC+AGG 0.564087 4_2:-17749009 Msa0592400:CDS
AGTAGATAACGGAGATCCCA+TGG 0.564523 4_2:+17749189 None:intergenic
AAACCAACGCTCTAGTGTTG+GGG 0.569521 4_2:+17748700 None:intergenic
AACGCATCACCGAGCACCAA+AGG 0.581768 4_2:+17748461 None:intergenic
CAAGTAACGGAGCTAGTTGA+CGG 0.586570 4_2:-17748839 Msa0592400:CDS
GTTACTTGAACCGCCAACAA+TGG 0.591268 4_2:+17748854 None:intergenic
TTTGGGTTTCTACCACCGGA+TGG 0.595045 4_2:+17749133 None:intergenic
TGTGTTCCGTTATTTCAAGA+CGG 0.599596 4_2:+17749052 None:intergenic
TGGTGCCTTGATTGTATCGG+TGG 0.602259 4_2:+17749242 None:intergenic
AAGTATTCTCAGCTGCAGCA+TGG 0.612633 4_2:+17748974 None:intergenic
TTGTATCGGTGGAAAGAACT+CGG 0.618677 4_2:+17749253 None:intergenic
ACTTTCCGTCAACGACAACA+TGG 0.629179 4_2:+17748792 None:intergenic
AACCAACGCTCTAGTGTTGG+GGG 0.632370 4_2:+17748701 None:intergenic
TGGTAGAAACCCAAATCCAA+CGG 0.650160 4_2:-17749125 Msa0592400:CDS
ATCGGTGGAAAGAACTCGGA+CGG 0.661975 4_2:+17749257 None:intergenic
TCTTCTTTATCACCATCCGG+TGG 0.677054 4_2:-17749145 Msa0592400:CDS
ACTGAGGTTAGAAGCTACGA+AGG 0.680362 4_2:-17748887 Msa0592400:intron
TGAATTGATGAAATGCCACA+GGG 0.686392 4_2:+17748769 None:intergenic
GCATATAACAGAATACGAGA+CGG 0.715960 4_2:+17749020 None:intergenic
TCGTTGACGGAAAGTCCCTG+TGG 0.745350 4_2:-17748784 Msa0592400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTTGTTTATCAAAT+AGG - chr4_2:17749129-17749148 Msa0592400:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG - chr4_2:17749130-17749149 Msa0592400:CDS 15.0%
!!! AAAAACTTTGTTTATCAAAT+AGG - chr4_2:17749129-17749148 Msa0592400:CDS 15.0%
!!! AAAACTTTGTTTATCAAATA+GGG - chr4_2:17749130-17749149 Msa0592400:CDS 15.0%
!! TTAAAAATCAATGAAGAGAT+TGG - chr4_2:17749191-17749210 Msa0592400:CDS 20.0%
!! TTAAAAATCAATGAAGAGAT+TGG - chr4_2:17749191-17749210 Msa0592400:CDS 20.0%
!! ATTGTTTGATCACTTGATTT+TGG + chr4_2:17748493-17748512 None:intergenic 25.0%
! AAAAATGAATCAACAATTGG+AGG + chr4_2:17748798-17748817 None:intergenic 25.0%
!! ATTGTTTGATCACTTGATTT+TGG + chr4_2:17748493-17748512 None:intergenic 25.0%
! AAAAATGAATCAACAATTGG+AGG + chr4_2:17748798-17748817 None:intergenic 25.0%
TGGTTGAAACAAGTAGATAA+CGG + chr4_2:17748537-17748556 None:intergenic 30.0%
ACTTGTTTCAACCAACAAAA+AGG - chr4_2:17748543-17748562 Msa0592400:CDS 30.0%
CTTGTTTCAACCAACAAAAA+GGG - chr4_2:17748544-17748563 Msa0592400:CDS 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG + chr4_2:17748557-17748576 None:intergenic 30.0%
AAGAGGTTGGAAAAAAGAAA+GGG + chr4_2:17748635-17748654 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG + chr4_2:17748801-17748820 None:intergenic 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG - chr4_2:17748809-17748828 Msa0592400:CDS 30.0%
AAAGTGAAAGGAAATCGTAT+TGG + chr4_2:17749056-17749075 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG - chr4_2:17749055-17749074 Msa0592400:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG - chr4_2:17749081-17749100 Msa0592400:CDS 30.0%
TGGTTGAAACAAGTAGATAA+CGG + chr4_2:17748537-17748556 None:intergenic 30.0%
ACTTGTTTCAACCAACAAAA+AGG - chr4_2:17748543-17748562 Msa0592400:CDS 30.0%
CTTGTTTCAACCAACAAAAA+GGG - chr4_2:17748544-17748563 Msa0592400:CDS 30.0%
! ATAAAGAAGACCCTTTTTGT+TGG + chr4_2:17748557-17748576 None:intergenic 30.0%
AAGAGGTTGGAAAAAAGAAA+GGG + chr4_2:17748635-17748654 None:intergenic 30.0%
GCGAAAAATGAATCAACAAT+TGG + chr4_2:17748801-17748820 None:intergenic 30.0%
!! TTCATTTTTCGCTTTAACTG+AGG - chr4_2:17748809-17748828 Msa0592400:CDS 30.0%
AAAGTGAAAGGAAATCGTAT+TGG + chr4_2:17749056-17749075 None:intergenic 30.0%
AATACGATTTCCTTTCACTT+TGG - chr4_2:17749055-17749074 Msa0592400:CDS 30.0%
AACAAAAGAATCACTCTGAT+GGG - chr4_2:17749081-17749100 Msa0592400:CDS 30.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG + chr4_2:17748476-17748495 None:intergenic 35.0%
AAACAATCCATTTGACTCCA+TGG - chr4_2:17748506-17748525 Msa0592400:CDS 35.0%
AACAATCCATTTGACTCCAT+GGG - chr4_2:17748507-17748526 Msa0592400:CDS 35.0%
CAAGAGGTTGGAAAAAAGAA+AGG + chr4_2:17748636-17748655 None:intergenic 35.0%
! TGTGTTCCGTTATTTCAAGA+CGG + chr4_2:17748663-17748682 None:intergenic 35.0%
GCATATAACAGAATACGAGA+CGG + chr4_2:17748695-17748714 None:intergenic 35.0%
TCTGTTATATGCAACAATGC+AGG - chr4_2:17748703-17748722 Msa0592400:CDS 35.0%
! AATTGGAGGTACATAGGTAT+AGG + chr4_2:17748784-17748803 None:intergenic 35.0%
! ATCAACAATTGGAGGTACAT+AGG + chr4_2:17748790-17748809 None:intergenic 35.0%
! CTAGTTGACGGTATTTTCAT+TGG - chr4_2:17748885-17748904 Msa0592400:intron 35.0%
TTTAACCATGTTGTCGTTGA+CGG - chr4_2:17748915-17748934 Msa0592400:intron 35.0%
TGAATTGATGAAATGCCACA+GGG + chr4_2:17748946-17748965 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG - chr4_2:17748946-17748965 Msa0592400:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG + chr4_2:17749068-17749087 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG - chr4_2:17749080-17749099 Msa0592400:CDS 35.0%
!! AAGCACTTTTAACTCACCTT+TGG - chr4_2:17749235-17749254 Msa0592400:CDS 35.0%
!!! TTTTGGTGCCTTGATTGTAT+CGG + chr4_2:17748476-17748495 None:intergenic 35.0%
AAACAATCCATTTGACTCCA+TGG - chr4_2:17748506-17748525 Msa0592400:CDS 35.0%
AACAATCCATTTGACTCCAT+GGG - chr4_2:17748507-17748526 Msa0592400:CDS 35.0%
CAAGAGGTTGGAAAAAAGAA+AGG + chr4_2:17748636-17748655 None:intergenic 35.0%
! TGTGTTCCGTTATTTCAAGA+CGG + chr4_2:17748663-17748682 None:intergenic 35.0%
GCATATAACAGAATACGAGA+CGG + chr4_2:17748695-17748714 None:intergenic 35.0%
TCTGTTATATGCAACAATGC+AGG - chr4_2:17748703-17748722 Msa0592400:CDS 35.0%
! AATTGGAGGTACATAGGTAT+AGG + chr4_2:17748784-17748803 None:intergenic 35.0%
! ATCAACAATTGGAGGTACAT+AGG + chr4_2:17748790-17748809 None:intergenic 35.0%
! CTAGTTGACGGTATTTTCAT+TGG - chr4_2:17748885-17748904 Msa0592400:intron 35.0%
TTTAACCATGTTGTCGTTGA+CGG - chr4_2:17748915-17748934 Msa0592400:intron 35.0%
TGAATTGATGAAATGCCACA+GGG + chr4_2:17748946-17748965 None:intergenic 35.0%
TGTGGCATTTCATCAATTCA+CGG - chr4_2:17748946-17748965 Msa0592400:CDS 35.0%
! TTTTGTTGCTCCAAAGTGAA+AGG + chr4_2:17749068-17749087 None:intergenic 35.0%
CAACAAAAGAATCACTCTGA+TGG - chr4_2:17749080-17749099 Msa0592400:CDS 35.0%
!! AAGCACTTTTAACTCACCTT+TGG - chr4_2:17749235-17749254 Msa0592400:CDS 35.0%
! TTGTATCGGTGGAAAGAACT+CGG + chr4_2:17748462-17748481 None:intergenic 40.0%
TCTTTCCACCGATACAATCA+AGG - chr4_2:17748465-17748484 Msa0592400:CDS 40.0%
TGGTAGAAACCCAAATCCAA+CGG - chr4_2:17748587-17748606 Msa0592400:CDS 40.0%
TTGGAAAAAAGAAAGGGCAG+AGG + chr4_2:17748629-17748648 None:intergenic 40.0%
!!! TCTTTTTTCCAACCTCTTGC+CGG - chr4_2:17748637-17748656 Msa0592400:CDS 40.0%
GGTACATAGGTATAGGTTCT+AGG + chr4_2:17748777-17748796 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG - chr4_2:17748845-17748864 Msa0592400:CDS 40.0%
CACATCAAAACCATTGTTGG+CGG - chr4_2:17748848-17748867 Msa0592400:CDS 40.0%
ATTGTTGGCGGTTCAAGTAA+CGG - chr4_2:17748860-17748879 Msa0592400:CDS 40.0%
GTGAATTGATGAAATGCCAC+AGG + chr4_2:17748947-17748966 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG - chr4_2:17748947-17748966 Msa0592400:CDS 40.0%
GGTTTCCAAATGGTGTTCAA+CGG - chr4_2:17749030-17749049 Msa0592400:CDS 40.0%
!! TTTAACTCACCTTTGGTGCT+CGG - chr4_2:17749242-17749261 Msa0592400:CDS 40.0%
! TTGTATCGGTGGAAAGAACT+CGG + chr4_2:17748462-17748481 None:intergenic 40.0%
TCTTTCCACCGATACAATCA+AGG - chr4_2:17748465-17748484 Msa0592400:CDS 40.0%
TGGTAGAAACCCAAATCCAA+CGG - chr4_2:17748587-17748606 Msa0592400:CDS 40.0%
TTGGAAAAAAGAAAGGGCAG+AGG + chr4_2:17748629-17748648 None:intergenic 40.0%
!!! TCTTTTTTCCAACCTCTTGC+CGG - chr4_2:17748637-17748656 Msa0592400:CDS 40.0%
GGTACATAGGTATAGGTTCT+AGG + chr4_2:17748777-17748796 None:intergenic 40.0%
AGGCACATCAAAACCATTGT+TGG - chr4_2:17748845-17748864 Msa0592400:CDS 40.0%
CACATCAAAACCATTGTTGG+CGG - chr4_2:17748848-17748867 Msa0592400:CDS 40.0%
ATTGTTGGCGGTTCAAGTAA+CGG - chr4_2:17748860-17748879 Msa0592400:CDS 40.0%
GTGAATTGATGAAATGCCAC+AGG + chr4_2:17748947-17748966 None:intergenic 40.0%
GTGGCATTTCATCAATTCAC+GGG - chr4_2:17748947-17748966 Msa0592400:CDS 40.0%
GGTTTCCAAATGGTGTTCAA+CGG - chr4_2:17749030-17749049 Msa0592400:CDS 40.0%
!! TTTAACTCACCTTTGGTGCT+CGG - chr4_2:17749242-17749261 Msa0592400:CDS 40.0%
!! AGTAGATAACGGAGATCCCA+TGG + chr4_2:17748526-17748545 None:intergenic 45.0%
GGGTCTTCTTTATCACCATC+CGG - chr4_2:17748564-17748583 Msa0592400:CDS 45.0%
TCTTCTTTATCACCATCCGG+TGG - chr4_2:17748567-17748586 Msa0592400:CDS 45.0%
! TGGATTTGGGTTTCTACCAC+CGG + chr4_2:17748586-17748605 None:intergenic 45.0%
! TTCCGTTATTTCAAGACGGC+CGG + chr4_2:17748659-17748678 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG + chr4_2:17748741-17748760 None:intergenic 45.0%
ACTGAGGTTAGAAGCTACGA+AGG - chr4_2:17748825-17748844 Msa0592400:CDS 45.0%
GTTACTTGAACCGCCAACAA+TGG + chr4_2:17748861-17748880 None:intergenic 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG - chr4_2:17748873-17748892 Msa0592400:CDS 45.0%
ACTTTCCGTCAACGACAACA+TGG + chr4_2:17748923-17748942 None:intergenic 45.0%
AAACCAACGCTCTAGTGTTG+GGG + chr4_2:17749015-17749034 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG + chr4_2:17749016-17749035 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - chr4_2:17749020-17749039 Msa0592400:CDS 45.0%
ATTGGCCGTTGAACACCATT+TGG + chr4_2:17749038-17749057 None:intergenic 45.0%
!! AGTAGATAACGGAGATCCCA+TGG + chr4_2:17748526-17748545 None:intergenic 45.0%
GGGTCTTCTTTATCACCATC+CGG - chr4_2:17748564-17748583 Msa0592400:CDS 45.0%
TCTTCTTTATCACCATCCGG+TGG - chr4_2:17748567-17748586 Msa0592400:CDS 45.0%
! TGGATTTGGGTTTCTACCAC+CGG + chr4_2:17748586-17748605 None:intergenic 45.0%
! TTCCGTTATTTCAAGACGGC+CGG + chr4_2:17748659-17748678 None:intergenic 45.0%
AAGTATTCTCAGCTGCAGCA+TGG + chr4_2:17748741-17748760 None:intergenic 45.0%
ACTGAGGTTAGAAGCTACGA+AGG - chr4_2:17748825-17748844 Msa0592400:CDS 45.0%
GTTACTTGAACCGCCAACAA+TGG + chr4_2:17748861-17748880 None:intergenic 45.0%
! CAAGTAACGGAGCTAGTTGA+CGG - chr4_2:17748873-17748892 Msa0592400:CDS 45.0%
ACTTTCCGTCAACGACAACA+TGG + chr4_2:17748923-17748942 None:intergenic 45.0%
AAACCAACGCTCTAGTGTTG+GGG + chr4_2:17749015-17749034 None:intergenic 45.0%
GAAACCAACGCTCTAGTGTT+GGG + chr4_2:17749016-17749035 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - chr4_2:17749020-17749039 Msa0592400:CDS 45.0%
ATTGGCCGTTGAACACCATT+TGG + chr4_2:17749038-17749057 None:intergenic 45.0%
ATCGGTGGAAAGAACTCGGA+CGG + chr4_2:17748458-17748477 None:intergenic 50.0%
TGGTGCCTTGATTGTATCGG+TGG + chr4_2:17748473-17748492 None:intergenic 50.0%
GGAGATCCCATGGAGTCAAA+TGG + chr4_2:17748516-17748535 None:intergenic 50.0%
! TTTGGGTTTCTACCACCGGA+TGG + chr4_2:17748582-17748601 None:intergenic 50.0%
GTGTCTCAGCCGTTGGATTT+GGG + chr4_2:17748599-17748618 None:intergenic 50.0%
AGTGTCTCAGCCGTTGGATT+TGG + chr4_2:17748600-17748619 None:intergenic 50.0%
!! ATAGAGAGTGTCTCAGCCGT+TGG + chr4_2:17748606-17748625 None:intergenic 50.0%
TGCCGGCCGTCTTGAAATAA+CGG - chr4_2:17748654-17748673 Msa0592400:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + chr4_2:17749014-17749033 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + chr4_2:17749017-17749036 None:intergenic 50.0%
ATCGGTGGAAAGAACTCGGA+CGG + chr4_2:17748458-17748477 None:intergenic 50.0%
TGGTGCCTTGATTGTATCGG+TGG + chr4_2:17748473-17748492 None:intergenic 50.0%
GGAGATCCCATGGAGTCAAA+TGG + chr4_2:17748516-17748535 None:intergenic 50.0%
! TTTGGGTTTCTACCACCGGA+TGG + chr4_2:17748582-17748601 None:intergenic 50.0%
GTGTCTCAGCCGTTGGATTT+GGG + chr4_2:17748599-17748618 None:intergenic 50.0%
AGTGTCTCAGCCGTTGGATT+TGG + chr4_2:17748600-17748619 None:intergenic 50.0%
!! ATAGAGAGTGTCTCAGCCGT+TGG + chr4_2:17748606-17748625 None:intergenic 50.0%
TGCCGGCCGTCTTGAAATAA+CGG - chr4_2:17748654-17748673 Msa0592400:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + chr4_2:17749014-17749033 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + chr4_2:17749017-17749036 None:intergenic 50.0%
ATTTCAAGACGGCCGGCAAG+AGG + chr4_2:17748652-17748671 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG - chr4_2:17748928-17748947 Msa0592400:intron 55.0%
AACCCCCAACACTAGAGCGT+TGG - chr4_2:17749009-17749028 Msa0592400:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG + chr4_2:17749254-17749273 None:intergenic 55.0%
ATTTCAAGACGGCCGGCAAG+AGG + chr4_2:17748652-17748671 None:intergenic 55.0%
TCGTTGACGGAAAGTCCCTG+TGG - chr4_2:17748928-17748947 Msa0592400:intron 55.0%
AACCCCCAACACTAGAGCGT+TGG - chr4_2:17749009-17749028 Msa0592400:CDS 55.0%
AACGCATCACCGAGCACCAA+AGG + chr4_2:17749254-17749273 None:intergenic 55.0%
CAAGACGGCCGGCAAGAGGT+TGG + chr4_2:17748648-17748667 None:intergenic 65.0%
CAAGACGGCCGGCAAGAGGT+TGG + chr4_2:17748648-17748667 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 17748448 17749286 17748448 ID=Msa0592400;Name=Msa0592400
chr4_2 mRNA 17748448 17749286 17748448 ID=Msa0592400-mRNA-1;Parent=Msa0592400;Name=Msa0592400-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0|0|3|0|258
chr4_2 exon 17749188 17749286 17749188 ID=Msa0592400-mRNA-1:exon:5113;Parent=Msa0592400-mRNA-1
chr4_2 exon 17748943 17749169 17748943 ID=Msa0592400-mRNA-1:exon:5112;Parent=Msa0592400-mRNA-1
chr4_2 exon 17748448 17748898 17748448 ID=Msa0592400-mRNA-1:exon:5111;Parent=Msa0592400-mRNA-1
chr4_2 CDS 17749188 17749286 17749188 ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1
chr4_2 CDS 17748943 17749169 17748943 ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1
chr4_2 CDS 17748448 17748898 17748448 ID=Msa0592400-mRNA-1:cds;Parent=Msa0592400-mRNA-1
Gene Sequence

>Msa0592400

ATGGGAACCGTCCGAGTTCTTTCCACCGATACAATCAAGGCACCAAAATCAAGTGATCAAACAATCCATTTGACTCCATGGGATCTCCGTTATCTACTTGGTCTTCTTTATCACCATCCGGTGGTAGAAACCCAAATCCAACGGCTGAGACACTCTCTATCCTCTGCCCTTTCTTTTTTCCAACCTCTTGCCGGCCGTCTTGAAATAACGGAACACAATGACAACACCGTCTCGTATTCTGTTATATGCAACAATGCAGGTGTTCTCTTTATCCATGCTGCAGCTGAGAATACTTGTGTTGCTGACATCCTAGAACCTATACCTATAAGCTACGAAGGCACATCAAAACCATTGTTGGCGGTTCAAGTAACGGAGCTAGTTGACGGTATTTTCATTGGTTGTTCATTTAACCATGTTGTCGTTGACGGAAAGTCCCTGTGGCATTTCATCAATTCACGGGCTGAAATATCACGTAGTTGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTGTTCAACGGCCAATACGATTTCCTTTCACTTTGGAGCAACAAAAGAATCACTCTGATGGGTTGAGTTTTTCGTCGTTTAATGATGAAAAACTTTGTTTATCAAATAGGGTATTTCATTTCACAAAAGAGAAAATTGTACAGCTGAAATTAAAAATCAATGAAGAGATTGGTGTCATCAATATCTTCTCTACAAGCACTTTTAACTCACCTTTGGTGCTCGGTGATGCGTTCCAAACAATTTGA

Protein sequence

>Msa0592400

MGTVRVLSTDTIKAPKSSDQTIHLTPWDLRYLLGLLYHHPVVETQIQRLRHSLSSALSFFQPLAGRLEITEHNDNTVSYSVICNNAGVLFIHAAAENTCVADILEPIPISYEGTSKPLLAVQVTELVDGIFIGCSFNHVVVDGKSLWHFINSRAEISRSCCHHQISKPPTLERWFPNGVQRPIRFPFTLEQQKNHSDGLSFSSFNDEKLCLSNRVFHFTKEKIVQLKLKINEEIGVINIFSTSTFNSPLVLGDAFQTI*