Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66458.t1 | XP_013470428.1 | 93.3 | 597 | 39 | 1 | 1 | 597 | 5 | 600 | 0.00E+00 | 1109.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66458.t1 | Q9M2T9 | 73.6 | 603 | 141 | 4 | 1 | 587 | 5 | 605 | 1.3e-257 | 890.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66458.t1 | A0A072VS17 | 93.3 | 597 | 39 | 1 | 1 | 597 | 5 | 600 | 0.0e+00 | 1109.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene66458 | 0.832061 | 1.17E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene66458 | 0.865214 | 6.95E-65 | -1.69E-46 |
| MS.gene049222 | MS.gene66458 | 0.886075 | 4.69E-72 | -1.69E-46 |
| MS.gene049232 | MS.gene66458 | 0.857215 | 1.90E-62 | -1.69E-46 |
| MS.gene049285 | MS.gene66458 | 0.867977 | 9.19E-66 | -1.69E-46 |
| MS.gene049320 | MS.gene66458 | 0.856976 | 2.23E-62 | -1.69E-46 |
| MS.gene049627 | MS.gene66458 | 0.934161 | 6.20E-96 | -1.69E-46 |
| MS.gene049865 | MS.gene66458 | 0.818089 | 2.35E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene66458 | 0.850912 | 1.25E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene66458 | 0.875167 | 3.81E-68 | -1.69E-46 |
| MS.gene050165 | MS.gene66458 | 0.876971 | 9.13E-69 | -1.69E-46 |
| MS.gene050170 | MS.gene66458 | 0.8251 | 5.63E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene66458 | 0.809756 | 1.62E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene66458 | 0.806809 | 6.87E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene66458 | 0.863084 | 3.20E-64 | -1.69E-46 |
| MS.gene050353 | MS.gene66458 | -0.805593 | 1.24E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene66458 | -0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene66458 | 0.817969 | 2.50E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene66458 | 0.882866 | 7.27E-71 | -1.69E-46 |
| MS.gene050518 | MS.gene66458 | 0.865738 | 4.75E-65 | -1.69E-46 |
| MS.gene050577 | MS.gene66458 | 0.849081 | 4.06E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene66458 | 0.84813 | 7.46E-60 | -1.69E-46 |
| MS.gene050675 | MS.gene66458 | 0.842 | 3.38E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene66458 | 0.844588 | 6.89E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene66458 | 0.842911 | 1.94E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene66458 | 0.833531 | 5.06E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene66458 | 0.836436 | 9.37E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene66458 | 0.834984 | 2.19E-56 | -1.69E-46 |
| MS.gene050876 | MS.gene66458 | 0.867243 | 1.58E-65 | -1.69E-46 |
| MS.gene05087 | MS.gene66458 | 0.912542 | 1.73E-83 | -1.69E-46 |
| MS.gene050883 | MS.gene66458 | -0.816473 | 5.43E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene66458 | 0.871482 | 6.61E-67 | -1.69E-46 |
| MS.gene050950 | MS.gene66458 | 0.840463 | 8.57E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene66458 | 0.84705 | 1.48E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene66458 | 0.841464 | 4.68E-58 | -1.69E-46 |
| MS.gene051317 | MS.gene66458 | 0.80975 | 1.62E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene66458 | -0.838421 | 2.90E-57 | -1.69E-46 |
| MS.gene051366 | MS.gene66458 | -0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene66458 | -0.839816 | 1.26E-57 | -1.69E-46 |
| MS.gene05141 | MS.gene66458 | -0.806449 | 8.18E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene66458 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene051564 | MS.gene66458 | 0.843562 | 1.30E-58 | -1.69E-46 |
| MS.gene051566 | MS.gene66458 | 0.820581 | 6.36E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene66458 | 0.903105 | 4.89E-79 | -1.69E-46 |
| MS.gene051858 | MS.gene66458 | 0.851877 | 6.67E-61 | -1.69E-46 |
| MS.gene051946 | MS.gene66458 | -0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene66458 | 0.842383 | 2.67E-58 | -1.69E-46 |
| MS.gene05234 | MS.gene66458 | -0.806655 | 7.40E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene66458 | 0.877454 | 6.20E-69 | -1.69E-46 |
| MS.gene052486 | MS.gene66458 | 0.890791 | 7.15E-74 | -1.69E-46 |
| MS.gene052503 | MS.gene66458 | 0.809154 | 2.18E-50 | -1.69E-46 |
| MS.gene052605 | MS.gene66458 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene052670 | MS.gene66458 | 0.846995 | 1.53E-59 | -1.69E-46 |
| MS.gene052823 | MS.gene66458 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene66458 | 0.809222 | 2.11E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene66458 | 0.839918 | 1.19E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene66458 | -0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene66458 | 0.842226 | 2.94E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene66458 | 0.858462 | 8.10E-63 | -1.69E-46 |
| MS.gene053286 | MS.gene66458 | 0.857069 | 2.10E-62 | -1.69E-46 |
| MS.gene053420 | MS.gene66458 | -0.834334 | 3.18E-56 | -1.69E-46 |
| MS.gene053421 | MS.gene66458 | -0.833272 | 5.87E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene66458 | 0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene053549 | MS.gene66458 | -0.829537 | 4.87E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene66458 | 0.83259 | 8.67E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene66458 | 0.803227 | 3.85E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene66458 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene66458 | 0.814267 | 1.68E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene66458 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene66458 | 0.827317 | 1.67E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene66458 | 0.827827 | 1.26E-54 | -1.69E-46 |
| MS.gene054616 | MS.gene66458 | -0.829181 | 5.94E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene66458 | 0.849607 | 2.90E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene66458 | 0.838742 | 2.40E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene66458 | 0.840772 | 7.11E-58 | -1.69E-46 |
| MS.gene054954 | MS.gene66458 | 0.863319 | 2.71E-64 | -1.69E-46 |
| MS.gene055154 | MS.gene66458 | -0.813614 | 2.34E-51 | -1.69E-46 |
| MS.gene055202 | MS.gene66458 | -0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene66458 | 0.870832 | 1.08E-66 | -1.69E-46 |
| MS.gene055502 | MS.gene66458 | 0.863715 | 2.04E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene66458 | 0.859785 | 3.25E-63 | -1.69E-46 |
| MS.gene055634 | MS.gene66458 | 0.836609 | 8.46E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene66458 | 0.810504 | 1.12E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene66458 | 0.809769 | 1.61E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene66458 | 0.823814 | 1.13E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene66458 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene66458 | 0.833837 | 4.24E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene66458 | 0.82833 | 9.54E-55 | -1.69E-46 |
| MS.gene056083 | MS.gene66458 | 0.804146 | 2.48E-49 | -1.69E-46 |
| MS.gene056311 | MS.gene66458 | -0.833203 | 6.10E-56 | -1.69E-46 |
| MS.gene056374 | MS.gene66458 | 0.811467 | 6.90E-51 | -1.69E-46 |
| MS.gene056409 | MS.gene66458 | 0.857149 | 1.99E-62 | -1.69E-46 |
| MS.gene056450 | MS.gene66458 | 0.838617 | 2.59E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene66458 | 0.864028 | 1.63E-64 | -1.69E-46 |
| MS.gene056510 | MS.gene66458 | 0.845967 | 2.92E-59 | -1.69E-46 |
| MS.gene056549 | MS.gene66458 | 0.854604 | 1.10E-61 | -1.69E-46 |
| MS.gene056550 | MS.gene66458 | -0.839601 | 1.44E-57 | -1.69E-46 |
| MS.gene056610 | MS.gene66458 | 0.851311 | 9.64E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene66458 | 0.862211 | 5.95E-64 | -1.69E-46 |
| MS.gene056692 | MS.gene66458 | 0.873959 | 9.81E-68 | -1.69E-46 |
| MS.gene056878 | MS.gene66458 | 0.802173 | 6.36E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene66458 | -0.811364 | 7.27E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene66458 | 0.813149 | 2.96E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene66458 | 0.873642 | 1.26E-67 | -1.69E-46 |
| MS.gene057872 | MS.gene66458 | 0.805088 | 1.58E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene66458 | 0.804212 | 2.41E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene66458 | -0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene66458 | 0.834073 | 3.70E-56 | -1.69E-46 |
| MS.gene058171 | MS.gene66458 | -0.815637 | 8.35E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene66458 | -0.803189 | 3.93E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene66458 | -0.810645 | 1.04E-50 | -1.69E-46 |
| MS.gene058183 | MS.gene66458 | 0.814117 | 1.81E-51 | -1.69E-46 |
| MS.gene058335 | MS.gene66458 | 0.832391 | 9.71E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene66458 | 0.853915 | 1.74E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene66458 | 0.851955 | 6.33E-61 | -1.69E-46 |
| MS.gene058544 | MS.gene66458 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene058719 | MS.gene66458 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene66458 | 0.875017 | 4.29E-68 | -1.69E-46 |
| MS.gene05883 | MS.gene66458 | 0.820933 | 5.28E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene66458 | 0.873941 | 9.95E-68 | -1.69E-46 |
| MS.gene059023 | MS.gene66458 | 0.848214 | 7.07E-60 | -1.69E-46 |
| MS.gene059029 | MS.gene66458 | 0.811323 | 7.42E-51 | -1.69E-46 |
| MS.gene059034 | MS.gene66458 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene059052 | MS.gene66458 | -0.817013 | 4.11E-52 | -1.69E-46 |
| MS.gene05912 | MS.gene66458 | 0.861821 | 7.83E-64 | -1.69E-46 |
| MS.gene05934 | MS.gene66458 | 0.81239 | 4.34E-51 | -1.69E-46 |
| MS.gene059479 | MS.gene66458 | -0.830227 | 3.31E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene66458 | 0.870052 | 1.95E-66 | -1.69E-46 |
| MS.gene059718 | MS.gene66458 | 0.865956 | 4.05E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene66458 | 0.830501 | 2.83E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene66458 | 0.873103 | 1.91E-67 | -1.69E-46 |
| MS.gene059837 | MS.gene66458 | 0.822093 | 2.85E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene66458 | 0.838892 | 2.20E-57 | -1.69E-46 |
| MS.gene059902 | MS.gene66458 | 0.851816 | 6.94E-61 | -1.69E-46 |
| MS.gene06000 | MS.gene66458 | 0.817216 | 3.70E-52 | -1.69E-46 |
| MS.gene060187 | MS.gene66458 | -0.82632 | 2.89E-54 | -1.69E-46 |
| MS.gene060339 | MS.gene66458 | 0.802087 | 6.62E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene66458 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene66458 | -0.872398 | 3.28E-67 | -1.69E-46 |
| MS.gene060602 | MS.gene66458 | -0.850071 | 2.15E-60 | -1.69E-46 |
| MS.gene060703 | MS.gene66458 | 0.872232 | 3.72E-67 | -1.69E-46 |
| MS.gene060762 | MS.gene66458 | 0.874059 | 9.08E-68 | -1.69E-46 |
| MS.gene060778 | MS.gene66458 | 0.831568 | 1.55E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene66458 | 0.904514 | 1.13E-79 | -1.69E-46 |
| MS.gene06092 | MS.gene66458 | 0.805304 | 1.42E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene66458 | 0.83594 | 1.25E-56 | -1.69E-46 |
| MS.gene061134 | MS.gene66458 | 0.823983 | 1.03E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene66458 | 0.838451 | 2.85E-57 | -1.69E-46 |
| MS.gene061171 | MS.gene66458 | 0.851465 | 8.72E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene66458 | 0.802121 | 6.52E-49 | -1.69E-46 |
| MS.gene061226 | MS.gene66458 | -0.831659 | 1.47E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66458 | MS.gene81617 | PPI |
| MS.gene016742 | MS.gene66458 | PPI |
| MS.gene070510 | MS.gene66458 | PPI |
| MS.gene66458 | MS.gene070503 | PPI |
| MS.gene016743 | MS.gene66458 | PPI |
| MS.gene37911 | MS.gene66458 | PPI |
| MS.gene66458 | MS.gene016758 | PPI |
| MS.gene66458 | MS.gene070511 | PPI |
| MS.gene66458 | MS.gene070507 | PPI |
| MS.gene66458 | MS.gene057884 | PPI |
| MS.gene66458 | MS.gene057883 | PPI |
| MS.gene057886 | MS.gene66458 | PPI |
| MS.gene070509 | MS.gene66458 | PPI |
| MS.gene66458 | MS.gene070492 | PPI |
| MS.gene81622 | MS.gene66458 | PPI |
| MS.gene81620 | MS.gene66458 | PPI |
| MS.gene070505 | MS.gene66458 | PPI |
| MS.gene66458 | MS.gene67840 | PPI |
| MS.gene81615 | MS.gene66458 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66458.t1 | MTR_1g115295 | 96.147 | 597 | 22 | 1 | 1 | 597 | 5 | 600 | 0.0 | 1198 |
| MS.gene66458.t1 | MTR_1g018280 | 70.370 | 513 | 43 | 7 | 85 | 597 | 58 | 461 | 0.0 | 670 |
| MS.gene66458.t1 | MTR_4g077700 | 26.678 | 581 | 343 | 21 | 55 | 570 | 19 | 581 | 1.48e-46 | 176 |
| MS.gene66458.t1 | MTR_4g122580 | 25.514 | 584 | 339 | 17 | 55 | 566 | 19 | 578 | 6.15e-45 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66458.t1 | AT3G55400 | 73.300 | 603 | 143 | 4 | 1 | 587 | 5 | 605 | 0.0 | 917 |
| MS.gene66458.t1 | AT3G55400 | 74.269 | 513 | 115 | 3 | 1 | 498 | 5 | 515 | 0.0 | 797 |
| MS.gene66458.t1 | AT4G13780 | 26.049 | 572 | 344 | 19 | 55 | 565 | 20 | 573 | 2.86e-46 | 175 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATGGCCATATACCATTT+TGG | 0.158244 | 1.4:-4928975 | None:intergenic |
| AAAGATGGCTGCACAAAATT+TGG | 0.164014 | 1.4:-4926666 | None:intergenic |
| AACGATTTGGTTAGTAAGTT+TGG | 0.200559 | 1.4:+4930710 | MS.gene66458:CDS |
| TTCCTCAGAGAGGTGGAATT+TGG | 0.232008 | 1.4:+4930755 | MS.gene66458:CDS |
| CGACGCCATTGCTCGATTTC+AGG | 0.234183 | 1.4:+4925081 | MS.gene66458:CDS |
| TGGCAGGAAATCTTCTTAAT+AGG | 0.253659 | 1.4:+4930951 | MS.gene66458:intron |
| TGTAATTTGACAGCGGCTTT+TGG | 0.258469 | 1.4:+4925568 | MS.gene66458:intron |
| TACGTTTCCATGCTGTTTAT+TGG | 0.262142 | 1.4:+4928918 | MS.gene66458:CDS |
| AGAAGAAGGGAAATGGAAAT+AGG | 0.298158 | 1.4:-4924930 | None:intergenic |
| TGCAGAAGGAAATGCATTTA+AGG | 0.298760 | 1.4:+4931033 | MS.gene66458:CDS |
| TTCCCGAGCATCGGTTGATT+GGG | 0.300431 | 1.4:+4927639 | MS.gene66458:CDS |
| GTATGGTTTGATGCTTTACT+AGG | 0.314469 | 1.4:+4927700 | MS.gene66458:CDS |
| GAAACAGTGTTTAGTAAATC+AGG | 0.320253 | 1.4:-4928304 | None:intergenic |
| TACGCTTGAACCAAACGATT+TGG | 0.323345 | 1.4:+4930697 | MS.gene66458:CDS |
| ATCAGCTTGTGAGGCTGTTC+TGG | 0.327249 | 1.4:+4931626 | MS.gene66458:CDS |
| CAACTCAAGCTCGGAGTAAC+AGG | 0.327281 | 1.4:-4932184 | None:intergenic |
| TTTCCCGAGCATCGGTTGAT+TGG | 0.328655 | 1.4:+4927638 | MS.gene66458:CDS |
| TACCAAGTGGGGTGGACTTA+AGG | 0.328656 | 1.4:+4932345 | MS.gene66458:CDS |
| TGCAACTGCTGCCACTTCTC+AGG | 0.342700 | 1.4:+4925640 | MS.gene66458:CDS |
| ATGCTCAACTTGGCTATTCC+AGG | 0.350933 | 1.4:+4932215 | MS.gene66458:CDS |
| ATCAACCGATGCTCGGGAAA+TGG | 0.352674 | 1.4:-4927635 | None:intergenic |
| CGTCAACGCCCCTCCCCATA+TGG | 0.359349 | 1.4:+4925033 | MS.gene66458:CDS |
| ACGATTTGGTTAGTAAGTTT+GGG | 0.362204 | 1.4:+4930711 | MS.gene66458:CDS |
| TAATGCTGGTAATTCCTATA+TGG | 0.374295 | 1.4:+4931656 | MS.gene66458:CDS |
| CCAGCTATGCTAATGTCTGC+TGG | 0.374936 | 1.4:+4928941 | MS.gene66458:CDS |
| TTCTTGAAACACAAGGCTTA+AGG | 0.378492 | 1.4:-4926575 | None:intergenic |
| CCCAGGTTGCTGCATCAAAT+TGG | 0.382507 | 1.4:-4932240 | None:intergenic |
| CCAGCTACACTGCACTTGAT+TGG | 0.385424 | 1.4:+4928337 | MS.gene66458:CDS |
| GCCTTGTGTTTCAAGAAAAG+AGG | 0.387769 | 1.4:+4926581 | MS.gene66458:CDS |
| GAGGTGTGAAACATTGGAAT+TGG | 0.388355 | 1.4:-4924894 | None:intergenic |
| GAAATGGAAATAGGGTTTGT+TGG | 0.388728 | 1.4:-4924921 | None:intergenic |
| ACCAAGTGGGGTGGACTTAA+GGG | 0.391465 | 1.4:+4932346 | MS.gene66458:CDS |
| TGGAATAAGCGCTACCCATA+TGG | 0.393918 | 1.4:-4925048 | None:intergenic |
| CACAAGCTTACAAGACGCTT+TGG | 0.398442 | 1.4:+4925696 | MS.gene66458:CDS |
| GAGGTGGAATTTGGCAATGA+TGG | 0.400433 | 1.4:+4930764 | MS.gene66458:CDS |
| AACTTACTAACCAAATCGTT+TGG | 0.404070 | 1.4:-4930707 | None:intergenic |
| TGGGTTAAGCCTTCCCAAAA+TGG | 0.406352 | 1.4:+4928961 | MS.gene66458:CDS |
| AAGAAAGTTATATTCATTAC+CGG | 0.407015 | 1.4:+4925593 | MS.gene66458:CDS |
| TGTGAGGCTGTTCTGGAGAT+TGG | 0.410328 | 1.4:+4931633 | MS.gene66458:CDS |
| AGCCTTCCCAAAATGGTATA+TGG | 0.410553 | 1.4:+4928968 | MS.gene66458:CDS |
| CAGCCTCACAAGCTGATGTC+AGG | 0.412097 | 1.4:-4931620 | None:intergenic |
| TTGCAGAAGAAAGCTGCTCT+TGG | 0.421073 | 1.4:-4924953 | None:intergenic |
| CCAATCAAGTGCAGTGTAGC+TGG | 0.425417 | 1.4:-4928337 | None:intergenic |
| TGTCAGCTGTGAAGAATATA+AGG | 0.426210 | 1.4:+4926276 | MS.gene66458:CDS |
| CATTTACCGAGCTGATTATG+AGG | 0.426407 | 1.4:+4926243 | MS.gene66458:CDS |
| CTGAAGTGGAAGAAGACAAA+AGG | 0.437522 | 1.4:+4932422 | MS.gene66458:CDS |
| CTCTTGGAGAAGAAGGGAAA+TGG | 0.439070 | 1.4:-4924937 | None:intergenic |
| GAAGAAGGGAAATGGAAATA+GGG | 0.439147 | 1.4:-4924929 | None:intergenic |
| ACCAATTTGATGCAGCAACC+TGG | 0.442225 | 1.4:+4932239 | MS.gene66458:CDS |
| AGCAATGGCGTCGGCGGCGA+TGG | 0.443811 | 1.4:-4925071 | None:intergenic |
| GCTCAAAGTACCAATTGTAT+TGG | 0.446015 | 1.4:-4930834 | None:intergenic |
| ATTCCTTTACCTCATGTAAA+CGG | 0.447184 | 1.4:-4926689 | None:intergenic |
| AAAGCTGCTCTTGGAGAAGA+AGG | 0.453613 | 1.4:-4924944 | None:intergenic |
| TGAGTCTTGTCACTCGGAAC+AGG | 0.454916 | 1.4:-4927667 | None:intergenic |
| AATTCACTGCCAGTGTTGAT+TGG | 0.457459 | 1.4:-4931000 | None:intergenic |
| AATAGGGTTTGTTGGATTTG+AGG | 0.459704 | 1.4:-4924913 | None:intergenic |
| AAACAAGCTCAAGAAGTTGT+TGG | 0.459841 | 1.4:+4932487 | MS.gene66458:CDS |
| TTTGTCATCATTTGAGGAAG+TGG | 0.461007 | 1.4:-4924981 | None:intergenic |
| GCCCCAATCAACCGATGCTC+GGG | 0.461201 | 1.4:-4927641 | None:intergenic |
| TAAACACTGTTTCTTCAAGT+TGG | 0.465611 | 1.4:+4928314 | MS.gene66458:CDS |
| GCACATCTTGCCAATACAAT+TGG | 0.466543 | 1.4:+4930824 | MS.gene66458:CDS |
| CCAGCAGACATTAGCATAGC+TGG | 0.469425 | 1.4:-4928941 | None:intergenic |
| GGAATAAGCGCTACCCATAT+GGG | 0.471131 | 1.4:-4925047 | None:intergenic |
| AAGAAGACTCTGAAAAGTAA+AGG | 0.472328 | 1.4:+4932457 | MS.gene66458:CDS |
| AGGGGCACGCTCGTCCATAT+AGG | 0.472951 | 1.4:-4931670 | None:intergenic |
| AGAGGGGTTGTGATGACATA+GGG | 0.474816 | 1.4:-4925004 | None:intergenic |
| AGAAGACTCTGAAAAGTAAA+GGG | 0.482397 | 1.4:+4932458 | MS.gene66458:CDS |
| ATAGGGTTTGTCATCATTTG+AGG | 0.484471 | 1.4:-4924987 | None:intergenic |
| ATGTTAGGATGGTATGAAGA+TGG | 0.485616 | 1.4:+4930658 | MS.gene66458:intron |
| AGGTGGAATTTGGCAATGAT+GGG | 0.485834 | 1.4:+4930765 | MS.gene66458:CDS |
| CTCCCTGACATCAGCTTGTG+AGG | 0.486304 | 1.4:+4931617 | MS.gene66458:CDS |
| TTAGTAAATCAGGTTGCTCC+TGG | 0.489812 | 1.4:-4928294 | None:intergenic |
| GGGTGGACTTAAGGGTGGTC+AGG | 0.492564 | 1.4:+4932354 | MS.gene66458:CDS |
| TGCCCCAATCAACCGATGCT+CGG | 0.495001 | 1.4:-4927642 | None:intergenic |
| CTGTTACTCCGAGCTTGAGT+TGG | 0.496703 | 1.4:+4932185 | MS.gene66458:CDS |
| TGTTAGGATGGTATGAAGAT+GGG | 0.497162 | 1.4:+4930659 | MS.gene66458:intron |
| CTGGATCAAAAGTGGCCTGC+GGG | 0.499199 | 1.4:+4927606 | MS.gene66458:CDS |
| CTCACCGTGTTCATCGGTGC+CGG | 0.502444 | 1.4:-4925612 | None:intergenic |
| GCAACTGCTGCCACTTCTCA+GGG | 0.504359 | 1.4:+4925641 | MS.gene66458:CDS |
| ACCCTTAAGTCCACCCCACT+TGG | 0.509023 | 1.4:-4932347 | None:intergenic |
| ATGAGATTGCAGTGGTCAGT+AGG | 0.514173 | 1.4:-4925671 | None:intergenic |
| TAAGGACAATGTAGCGAGGC+TGG | 0.515013 | 1.4:+4931051 | MS.gene66458:CDS |
| AGACTCAGACTATATATGTA+TGG | 0.517740 | 1.4:+4927683 | MS.gene66458:CDS |
| ACTTAAGGGTGGTCAGGTCA+TGG | 0.517933 | 1.4:+4932360 | MS.gene66458:CDS |
| GGATTTGAGGTGTGAAACAT+TGG | 0.518965 | 1.4:-4924900 | None:intergenic |
| ATTGGAACGGAGTGAAAGAA+TGG | 0.519846 | 1.4:-4924876 | None:intergenic |
| CTATTTGGTGCAGGATGAGA+AGG | 0.519918 | 1.4:+4926521 | MS.gene66458:intron |
| AAGAGGGGTTGTGATGACAT+AGG | 0.521343 | 1.4:-4925005 | None:intergenic |
| TATGGTTTGATGCTTTACTA+GGG | 0.525816 | 1.4:+4927701 | MS.gene66458:CDS |
| TGAGATTGCAGTGGTCAGTA+GGG | 0.526148 | 1.4:-4925670 | None:intergenic |
| AATCTTCTTAATAGGACTCT+AGG | 0.528211 | 1.4:+4930959 | MS.gene66458:CDS |
| ATCCTAGCAAAGACTGGTTG+AGG | 0.529078 | 1.4:-4932388 | None:intergenic |
| CCTTGGTCTCTCTTTAAGCA+AGG | 0.530338 | 1.4:+4931690 | MS.gene66458:CDS |
| TGCTGCATCAAATTGGTCCC+TGG | 0.531484 | 1.4:-4932233 | None:intergenic |
| CAGCTATGCTAATGTCTGCT+GGG | 0.531516 | 1.4:+4928942 | MS.gene66458:CDS |
| ACCTCATGTAAACGGAAAGA+TGG | 0.533246 | 1.4:-4926681 | None:intergenic |
| GTTCTGGAGATTGGTAATGC+TGG | 0.538081 | 1.4:+4931642 | MS.gene66458:CDS |
| CCCAAAATGGTATATGGCCA+TGG | 0.540455 | 1.4:+4928974 | MS.gene66458:CDS |
| TGAAGTGGAAGAAGACAAAA+GGG | 0.545185 | 1.4:+4932423 | MS.gene66458:CDS |
| TGCTTCTGAAGCAGCTGCCA+AGG | 0.545752 | 1.4:+4931719 | MS.gene66458:CDS |
| TCCCGAGCATCGGTTGATTG+GGG | 0.545821 | 1.4:+4927640 | MS.gene66458:CDS |
| CCAATTTGATGCAGCAACCT+GGG | 0.549013 | 1.4:+4932240 | MS.gene66458:CDS |
| ATGAAGATGGGCAAGTCACT+AGG | 0.550900 | 1.4:+4930671 | MS.gene66458:CDS |
| ATATGGACGAGCGTGCCCCT+TGG | 0.551543 | 1.4:+4931673 | MS.gene66458:CDS |
| AGCTCGGTAAATGTCACCAT+TGG | 0.558279 | 1.4:-4926233 | None:intergenic |
| GTCAACGCCCCTCCCCATAT+GGG | 0.558701 | 1.4:+4925034 | MS.gene66458:CDS |
| TTGAAACACAAGGCTTAAGG+TGG | 0.560531 | 1.4:-4926572 | None:intergenic |
| CTGTCTCTAATATAATTACA+AGG | 0.560785 | 1.4:-4932135 | None:intergenic |
| TATTCGAGAGTGCTTGCCAA+TGG | 0.562606 | 1.4:+4926217 | MS.gene66458:CDS |
| AACCTCAACCAGTCTTTGCT+AGG | 0.566335 | 1.4:+4932386 | MS.gene66458:CDS |
| TATATTCTCCAACTCAAGCT+CGG | 0.567513 | 1.4:-4932193 | None:intergenic |
| GTCAAAATATCAGAAGTCAC+TGG | 0.568046 | 1.4:+4926623 | MS.gene66458:CDS |
| ATCAGCACTAGCTGATGACC+AGG | 0.568431 | 1.4:+4928276 | MS.gene66458:CDS |
| ATACTTCTTCCTCAGAGAGG+TGG | 0.569549 | 1.4:+4930748 | MS.gene66458:CDS |
| ATACCTTTGTCAAGAATCCA+TGG | 0.573946 | 1.4:-4928991 | None:intergenic |
| GATTGAAAATCAAACTGAAG+TGG | 0.574353 | 1.4:+4932408 | MS.gene66458:CDS |
| GGGGCGTTGACGTAGTAAAG+AGG | 0.574782 | 1.4:-4925022 | None:intergenic |
| TAAATTTCTAGGTTCAAACC+TGG | 0.577775 | 1.4:+4927587 | MS.gene66458:intron |
| GTTCAAACCTGGATCAAAAG+TGG | 0.577799 | 1.4:+4927598 | MS.gene66458:CDS |
| AATGGCGTCGGCGGCGATGG+TGG | 0.578592 | 1.4:-4925068 | None:intergenic |
| TACACTGCACTTGATTGGTA+AGG | 0.579282 | 1.4:+4928342 | MS.gene66458:CDS |
| TGCTCAACTTGGCTATTCCA+GGG | 0.580797 | 1.4:+4932216 | MS.gene66458:CDS |
| AGCGCTACCCATATGGGGAG+GGG | 0.586669 | 1.4:-4925041 | None:intergenic |
| ATTGCAGTGGTCAGTAGGGG+TGG | 0.588624 | 1.4:-4925666 | None:intergenic |
| GGGCGTTGACGTAGTAAAGA+GGG | 0.589011 | 1.4:-4925021 | None:intergenic |
| AAATCGAGCAATGGCGTCGG+CGG | 0.591504 | 1.4:-4925077 | None:intergenic |
| AATTCCACTACGGCTGCAGA+AGG | 0.591965 | 1.4:+4931019 | MS.gene66458:CDS |
| AGCCTCACAAGCTGATGTCA+GGG | 0.594895 | 1.4:-4931619 | None:intergenic |
| TGGAGAATATATGCTCAACT+TGG | 0.596758 | 1.4:+4932205 | MS.gene66458:CDS |
| GCCATCTTTCCGTTTACATG+AGG | 0.597157 | 1.4:+4926680 | MS.gene66458:CDS |
| ACACAAGGCTTAAGGTGGAT+CGG | 0.602973 | 1.4:-4926567 | None:intergenic |
| ATTTACCGAGCTGATTATGA+GGG | 0.603837 | 1.4:+4926244 | MS.gene66458:CDS |
| CCTTGCTTAAAGAGAGACCA+AGG | 0.604022 | 1.4:-4931690 | None:intergenic |
| AAAGAACTGCCAATCAACAC+TGG | 0.604833 | 1.4:+4930991 | MS.gene66458:CDS |
| CAAGCATGAAGCAGTTGTGA+AGG | 0.607264 | 1.4:+4926189 | MS.gene66458:CDS |
| AGGGGTGGAACCCTGAGAAG+TGG | 0.613335 | 1.4:-4925651 | None:intergenic |
| TAGCTGGCCAATAAACAGCA+TGG | 0.614722 | 1.4:-4928925 | None:intergenic |
| AAATTCCCTCATAATCAGCT+CGG | 0.616005 | 1.4:-4926249 | None:intergenic |
| GGGAAATGGAAAAGTCCCGC+AGG | 0.620262 | 1.4:-4927621 | None:intergenic |
| ATTACCGGCACCGATGAACA+CGG | 0.621414 | 1.4:+4925608 | MS.gene66458:CDS |
| AAGCGCTACCCATATGGGGA+GGG | 0.629346 | 1.4:-4925042 | None:intergenic |
| GTGAAACATTGGAATTGGAA+CGG | 0.630511 | 1.4:-4924889 | None:intergenic |
| ATTTCCTTCTGCAGCCGTAG+TGG | 0.632038 | 1.4:-4931023 | None:intergenic |
| AAGCTGCTCTTGGAGAAGAA+GGG | 0.636630 | 1.4:-4924943 | None:intergenic |
| TAGAGAGATACCAAGTGGGG+TGG | 0.641306 | 1.4:+4932337 | MS.gene66458:intron |
| ATAGTCTGAGTCTTGTCACT+CGG | 0.651357 | 1.4:-4927673 | None:intergenic |
| CAATGATGGGGACTATTCAG+AGG | 0.651752 | 1.4:+4930778 | MS.gene66458:CDS |
| CTGAAATCGAGCAATGGCGT+CGG | 0.652722 | 1.4:-4925080 | None:intergenic |
| ACTGGCAGTGAATTCCACTA+CGG | 0.653538 | 1.4:+4931009 | MS.gene66458:CDS |
| GAGATTGCAGTGGTCAGTAG+GGG | 0.659757 | 1.4:-4925669 | None:intergenic |
| TGCCAAATTCCACCTCTCTG+AGG | 0.662782 | 1.4:-4930757 | None:intergenic |
| AGGTACCTGAAATCGAGCAA+TGG | 0.663948 | 1.4:-4925086 | None:intergenic |
| ATTGTAGAGAGATACCAAGT+GGG | 0.663995 | 1.4:+4932333 | MS.gene66458:intron |
| CCTGGATCAAAAGTGGCCTG+CGG | 0.665415 | 1.4:+4927605 | MS.gene66458:CDS |
| TGGTCTCTCTTTAAGCAAGG+AGG | 0.665745 | 1.4:+4931693 | MS.gene66458:CDS |
| CATTGTAGAGAGATACCAAG+TGG | 0.666340 | 1.4:+4932332 | MS.gene66458:intron |
| CTTGCTTAAAGAGAGACCAA+GGG | 0.666502 | 1.4:-4931689 | None:intergenic |
| GAAGACAAAAGGGTTGCAGT+CGG | 0.667099 | 1.4:+4932433 | MS.gene66458:CDS |
| TAAGCGCTACCCATATGGGG+AGG | 0.670114 | 1.4:-4925043 | None:intergenic |
| TAGATACTTCTTCCTCAGAG+AGG | 0.671329 | 1.4:+4930745 | MS.gene66458:CDS |
| GGTGGAATTTGGCAATGATG+GGG | 0.671855 | 1.4:+4930766 | MS.gene66458:CDS |
| TGGCCATGGATTCTTGACAA+AGG | 0.674126 | 1.4:+4928988 | MS.gene66458:CDS |
| TGATAAGTTCATTAGAACAA+CGG | 0.677637 | 1.4:+4926162 | MS.gene66458:CDS |
| AAAATATCAGAAGTCACTGG+AGG | 0.677971 | 1.4:+4926626 | MS.gene66458:CDS |
| GAATAAGCGCTACCCATATG+GGG | 0.679075 | 1.4:-4925046 | None:intergenic |
| GGCGTTGACGTAGTAAAGAG+GGG | 0.679296 | 1.4:-4925020 | None:intergenic |
| AGTAACAGGAGATAGTGCAA+TGG | 0.702926 | 1.4:-4932170 | None:intergenic |
| TTGTAGAGAGATACCAAGTG+GGG | 0.703831 | 1.4:+4932334 | MS.gene66458:intron |
| CATTTAAGGACAATGTAGCG+AGG | 0.708225 | 1.4:+4931047 | MS.gene66458:CDS |
| TTGCTTAAAGAGAGACCAAG+GGG | 0.714060 | 1.4:-4931688 | None:intergenic |
| AAGTGGGGTGGACTTAAGGG+TGG | 0.722735 | 1.4:+4932349 | MS.gene66458:CDS |
| CTTGTGAAATGAGATTGCAG+TGG | 0.809288 | 1.4:-4925679 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4924848 | 4932516 | 4924848 | ID=MS.gene66458 |
| chr1.4 | mRNA | 4924848 | 4932516 | 4924848 | ID=MS.gene66458.t1;Parent=MS.gene66458 |
| chr1.4 | exon | 4924848 | 4925102 | 4924848 | ID=MS.gene66458.t1.exon1;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4924848 | 4925102 | 4924848 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4925581 | 4925724 | 4925581 | ID=MS.gene66458.t1.exon2;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4925581 | 4925724 | 4925581 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4926148 | 4926297 | 4926148 | ID=MS.gene66458.t1.exon3;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4926148 | 4926297 | 4926148 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4926534 | 4926701 | 4926534 | ID=MS.gene66458.t1.exon4;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4926534 | 4926701 | 4926534 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4927598 | 4927722 | 4927598 | ID=MS.gene66458.t1.exon5;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4927598 | 4927722 | 4927598 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4928270 | 4928363 | 4928270 | ID=MS.gene66458.t1.exon6;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4928270 | 4928363 | 4928270 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4928911 | 4929009 | 4928911 | ID=MS.gene66458.t1.exon7;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4928911 | 4929009 | 4928911 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4930665 | 4930845 | 4930665 | ID=MS.gene66458.t1.exon8;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4930665 | 4930845 | 4930665 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4930957 | 4931072 | 4930957 | ID=MS.gene66458.t1.exon9;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4930957 | 4931072 | 4930957 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4931585 | 4931740 | 4931585 | ID=MS.gene66458.t1.exon10;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4931585 | 4931740 | 4931585 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4932133 | 4932261 | 4932133 | ID=MS.gene66458.t1.exon11;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4932133 | 4932261 | 4932133 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| chr1.4 | exon | 4932340 | 4932516 | 4932340 | ID=MS.gene66458.t1.exon12;Parent=MS.gene66458.t1 |
| chr1.4 | CDS | 4932340 | 4932516 | 4932340 | ID=cds.MS.gene66458.t1;Parent=MS.gene66458.t1 |
| Gene Sequence |
| Protein sequence |
