AlfalfaGEDB | MS.gene95478

M. sativa cultivar XinJiangDaYe / MS.gene95478

KEGG: -
GO: -
PFAM: PF11443.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95478.t1	PNY14473.1	85.4	659	86	4	3	661	4	652	0.00E+00	1114.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95478.t1	Q5UNY4	34.7	377	209	10	284	641	135	493	4.8e-56	220.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95478.t1	A0A2K3PGR9	85.4	659	86	4	3	661	4	652	0.0e+00	1114.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene95478	-0.840275	9.59E-58	-1.69E-46
MS.gene049217	MS.gene95478	-0.860191	2.45E-63	-1.69E-46
MS.gene049222	MS.gene95478	-0.856788	2.54E-62	-1.69E-46
MS.gene049232	MS.gene95478	-0.804075	2.57E-49	-1.69E-46
MS.gene049281	MS.gene95478	0.804012	2.65E-49	-1.69E-46
MS.gene049285	MS.gene95478	-0.836856	7.32E-57	-1.69E-46
MS.gene04932	MS.gene95478	0.804836	1.78E-49	-1.69E-46
MS.gene049320	MS.gene95478	-0.848764	4.98E-60	-1.69E-46
MS.gene049609	MS.gene95478	-0.813686	2.26E-51	-1.69E-46
MS.gene049611	MS.gene95478	0.857389	1.69E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95478.t1	MTR_5g045160	87.838	666	74	3	1	661	1	664	1158
MS.gene95478.t1	MTR_6g445440	80.938	661	101	5	1	661	1	636	1072
MS.gene95478.t1	MTR_3g103410	69.410	729	128	7	3	661	4	707	994
MS.gene95478.t1	MTR_5g045130	96.192	499	18	1	163	661	2	499	990

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95478.t1	AT5G13210	59.012	688	240	6	1	661	1	673	814
MS.gene95478.t1	AT5G43400	56.585	691	234	7	1	661	1	655	776
MS.gene95478.t1	AT5G43390	57.692	650	223	7	38	661	20	643	741
MS.gene95478.t1	AT3G24780	58.472	602	209	3	61	626	107	703	728

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Find 215 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACGCCACAACCACA+GGG	0.637769	5.2:+35413998	MS.gene95478:CDS
AAACTCGTCTGTAACCTCCG+TGG	0.731806	5.2:+35413705	MS.gene95478:CDS
AAAGACTCTATAATCTCATG+AGG	0.642725	5.2:-35414641	None:intergenic
AAAGGAGTGGCGCTGGTGAG+TGG	0.584807	5.2:+35415211	MS.gene95478:CDS
AAATCAGTCTTGCTGCTAAA+TGG	0.287484	5.2:+35414270	MS.gene95478:CDS
AACTCCAACACCTTCCTCAA+CGG	0.630137	5.2:-35414443	None:intergenic
AAGAAGAGTTGACCGATCAA+AGG	0.583361	5.2:-35414312	None:intergenic
AAGATGTGTTAGTGCCGTTG+AGG	0.614181	5.2:+35414429	MS.gene95478:CDS
AAGGAACCGAAACCCACCGA+TGG	0.576154	5.2:+35413536	MS.gene95478:CDS
AAGTATAGCGAGAAAGGGTA+TGG	0.530567	5.2:+35415118	MS.gene95478:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACTCTATAATCTCATG+AGG	-	chr5.2:35414644-35414663	None:intergenic	30.0%
ACACTGTTCTTAGATAATGA+AGG	+	chr5.2:35415253-35415272	MS.gene95478:CDS	30.0%
AGAATACGGTATAGAATTTC+AGG	-	chr5.2:35413861-35413880	None:intergenic	30.0%
AGATTCCAAAAAACTATCTG+AGG	-	chr5.2:35415154-35415173	None:intergenic	30.0%
CATGAGATTATAGAGTCTTT+GGG	+	chr5.2:35414644-35414663	MS.gene95478:CDS	30.0%
CTTCTCCTTATAAAACTTCA+TGG	-	chr5.2:35414534-35414553	None:intergenic	30.0%
GAATACGGTATAGAATTTCA+GGG	-	chr5.2:35413860-35413879	None:intergenic	30.0%
TCATGAGATTATAGAGTCTT+TGG	+	chr5.2:35414643-35414662	MS.gene95478:CDS	30.0%
AAATCAGTCTTGCTGCTAAA+TGG	+	chr5.2:35414270-35414289	MS.gene95478:CDS	35.0%
AGAAAGAAGAGTGGAATGAA+AGG	+	chr5.2:35413907-35413926	MS.gene95478:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	35413366	35415351	35413366	ID=MS.gene95478
chr5.2	mRNA	35413366	35415351	35413366	ID=MS.gene95478.t1;Parent=MS.gene95478
chr5.2	exon	35413366	35415351	35413366	ID=MS.gene95478.t1.exon1;Parent=MS.gene95478.t1
chr5.2	CDS	35413366	35415351	35413366	ID=cds.MS.gene95478.t1;Parent=MS.gene95478.t1

Gene Sequence

>MS.gene95478

ATGGCCGCCGTCACTATCGTTGGCCCACCTGAGATCTACTCTCTCAATTCAAACCCTAACCCTACCACCGCCAACACCATCGCTCAAAAAACTGAAACCACCGTCCCCACCACCACAACTACTAACGATGTCTTCGTCGATCAAATGGTCGCCAACTTCAACTCTCTGGGAAGGAACCGAAACCCACCGATGGGGTTGACAGAGAACATGTCACCGACATTTCTCTCCACCGGTAACCCTTGTCTCGATTTCTTCTTCCATGTTGTTCCTGATACTCCCTCTGAGACACTCGTCGAGAGGCTCAAACTAGCTTGGTCACACAACCCACTCACCACTCTCAAACTCGTCTGTAACCTCCGTGGTGTTCGCGGTACCGGCAAGTCCGACAAAGAAGGCTTCTACGCCGCTGCTCTATGGTTTCATGAAAATCACCCTAAAACCCTAGCTACCAATATTCCTTCCCTCGCTGACTTTGGTTACTTCAAAGATCTCCCTGAAATTCTATACCGTATTCTCGAAGGTTCTGGAATTCGTGAAATCCAGAAAGAAGAGTGGAATGAAAGGAAGTCTGGATCCAAAAATAAGCGCTTGCAACAATCAAACCCTTTTGCTTTAAGAAGAAGAATAAATAAAAAACAACGCCACAACCACAGGGAGCACAAAGGTGCGTGGAAACTCACTGACAAAGACTCTTTGATGACTGAAGAGGTGGCGGCAAGGGCTAAGGCTCAGAAACAAACCGCTCACGTTTTGAAGGAAGAGAAGAGGATTGCATTGGCTAAGAAGCTTGTTGATCGTTACACTAACGATCCCAATTTTAAGTTCCTTCATGATTCTATCTCTGATCATTTTGCTGATTGTTTGAAGAAGGATCTCGAGTTTTTGAAATCTGGGTCACCCACAAAAATCAGTCTTGCTGCTAAATGGTGCCCTTCTGTTGACTCTTCCTTTGATCGGTCAACTCTTCTTTGTGAGACAATTGCGAAGAGGATCTTCCCTCGGGAGGAATATCAAGGTGTGGAGGAGGCGCATTATGCTTACAGGGTTCGTGATCGTTTGAGGAAAGATGTGTTAGTGCCGTTGAGGAAGGTGTTGGAGTTGCCTGAGGTGTTTATTGGTGCTAATCAATGGGGTTTGATTCCTTACAACAGGGTTGCTTCTGTGGCCATGAAGTTTTATAAGGAGAAGTTTTTGAAGCATGATAAGGAGAGGTTTGAGAAGTACTTGGAGGATGTGAAGGCGGGGAAGACTACTATTGCTGCTGGTGCTTTGCTTCCTCATGAGATTATAGAGTCTTTGGGTGATGGAGATGGTGGAGAAGTGGCTGAGTTGCAGTGGAAGAGAATCGTTGATGATTTGCTCAAGAAGGGAAAGATGAAAAATTGTCTTGCTGTGTGTGATGTGTCTGGGAGTATGGATGGGACCCCAATGGAGGTGTCTGTGGCATTGGGATTGTTGGTGTCTGAATTGAGTGATGAACCTTGGAAAGGGAAAGTTATTACTTTCAGCGAGGAGCCTCAGCTTCATGTGATTAAGGGGGATAATCTCAAGTCCAAGACACAGTTTGTGAGGGATATGGATTGGGGAGGGAACACTGATTTCCAGAAGGTGTTTGATCGCATATTAGAGGTGGCTGTTAATGGGAATCTCAAGGAGGATCAGATGATTAAAAGGATCTTCGTATTCAGTGACATGGAGTTTGATCAAGCGTCTATGAACCCCTGGGAGACCGATTACCAAGCAATCACTAGGAAGTATAGCGAGAAAGGGTATGGTTCTGTTGTGCCTCAGATAGTTTTTTGGAATCTGAGAGACTCAAGGGCCACCCCAGTGCCGGCTACTCAGAAAGGAGTGGCGCTGGTGAGTGGTTTCTCTAAGAATCTGCTGACACTGTTCTTAGATAATGAAGGTGAAATAAGCCCTGAAGAAGCCATGGAAGCTGCCATTGCTGGCCCTGAGTATCAGAAACTAGTTGTGTTGGATTGA

Protein sequence

>MS.gene95478.t1

MAAVTIVGPPEIYSLNSNPNPTTANTIAQKTETTVPTTTTTNDVFVDQMVANFNSLGRNRNPPMGLTENMSPTFLSTGNPCLDFFFHVVPDTPSETLVERLKLAWSHNPLTTLKLVCNLRGVRGTGKSDKEGFYAAALWFHENHPKTLATNIPSLADFGYFKDLPEILYRILEGSGIREIQKEEWNERKSGSKNKRLQQSNPFALRRRINKKQRHNHREHKGAWKLTDKDSLMTEEVAARAKAQKQTAHVLKEEKRIALAKKLVDRYTNDPNFKFLHDSISDHFADCLKKDLEFLKSGSPTKISLAAKWCPSVDSSFDRSTLLCETIAKRIFPREEYQGVEEAHYAYRVRDRLRKDVLVPLRKVLELPEVFIGANQWGLIPYNRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIESLGDGDGGEVAELQWKRIVDDLLKKGKMKNCLAVCDVSGSMDGTPMEVSVALGLLVSELSDEPWKGKVITFSEEPQLHVIKGDNLKSKTQFVRDMDWGGNTDFQKVFDRILEVAVNGNLKEDQMIKRIFVFSDMEFDQASMNPWETDYQAITRKYSEKGYGSVVPQIVFWNLRDSRATPVPATQKGVALVSGFSKNLLTLFLDNEGEISPEEAMEAAIAGPEYQKLVVLD