AlfalfaGEDB | MS.gene63638

M. sativa cultivar XinJiangDaYe / MS.gene63638

KEGG: -
GO: -
PFAM: PF05725.15 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63638.t1	XP_003599473.1	46.7	1210	123	2	1	689	1	1209	3.50E-259	904.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63638.t1	Q9LRR5	24.7	673	313	14	203	689	719	1383	4.1e-38	161.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63638.t1	G7IX53	46.7	1210	123	2	1	689	1	1209	2.5e-259	904.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene63638	-0.856194	3.79E-62	-1.69E-46
MS.gene049217	MS.gene63638	-0.81814	2.29E-52	-1.69E-46
MS.gene049222	MS.gene63638	-0.843829	1.10E-58	-1.69E-46
MS.gene049232	MS.gene63638	-0.812789	3.55E-51	-1.69E-46
MS.gene049259	MS.gene63638	0.813118	3.01E-51	-1.69E-46
MS.gene049281	MS.gene63638	0.807958	3.92E-50	-1.69E-46
MS.gene049285	MS.gene63638	-0.824897	6.29E-54	-1.69E-46
MS.gene049320	MS.gene63638	-0.82691	2.09E-54	-1.69E-46
MS.gene049549	MS.gene63638	0.825968	3.51E-54	-1.69E-46
MS.gene049611	MS.gene63638	0.838816	2.30E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63638.t1	MTR_3g033860	72.222	540	126	2	203	742	724	1239	0.0	770
MS.gene63638.t1	MTR_3g033860	92.891	211	15	0	1	211	1	211	4.43e-110	363
MS.gene63638.t1	MTR_3g028040	71.481	540	130	2	203	742	724	1239	0.0	754
MS.gene63638.t1	MTR_3g028040	90.047	211	21	0	1	211	1	211	1.06e-115	379
MS.gene63638.t1	MTR_3g034380	71.852	540	128	2	203	742	723	1238	0.0	741
MS.gene63638.t1	MTR_3g034380	78.829	222	47	0	1	222	1	222	2.05e-96	326
MS.gene63638.t1	MTR_3g034430	75.416	541	131	2	203	742	724	1263	0.0	730
MS.gene63638.t1	MTR_3g034430	80.180	222	44	0	1	222	1	222	2.31e-97	328
MS.gene63638.t1	MTR_3g034460	68.704	540	127	3	203	742	708	1205	0.0	676
MS.gene63638.t1	MTR_3g034460	77.725	211	22	1	1	211	10	195	1.13e-87	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63638.t1	AT3G14470	31.959	291	164	6	203	483	725	991	1.98e-32	135
MS.gene63638.t1	AT3G14470	33.468	248	157	5	4	244	2	248	1.11e-30	130
MS.gene63638.t1	AT3G14470	31.959	291	164	6	203	483	725	991	1.98e-32	135
MS.gene63638.t1	AT3G14470	33.468	248	157	5	4	244	2	248	1.11e-30	130
MS.gene63638.t1	AT3G14460	43.590	156	81	3	224	377	749	899	1.06e-30	130
MS.gene63638.t1	AT3G14460	30.537	298	177	7	418	689	1090	1383	4.11e-22	103
MS.gene63638.t1	AT3G14460	25.234	214	147	5	6	211	1	209	6.06e-15	79.7

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Find 164 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATCCAGTGGGAAGG+AGG	0.582138	3.2:+23384007	None:intergenic
AAAAGGTTGAAAGGAAGAAT+TGG	0.371394	3.2:+23384595	None:intergenic
AAACCCCATTCAATTAATAG+CGG	0.668440	3.2:+23383708	None:intergenic
AAAGCTCAGCATCTTGAGAG+AGG	0.632503	3.2:+23383386	None:intergenic
AAAGTGATGACTCGCTTAAA+GGG	0.432255	3.2:-23384877	MS.gene63638:CDS
AACACTGGCAATAACAATAT+AGG	0.456844	3.2:-23386346	MS.gene63638:CDS
AACATCTCAAGGGATGGAAA+AGG	0.570214	3.2:+23384578	None:intergenic
AACATGGTCCTATGAGAGGC+TGG	0.525591	3.2:-23382099	MS.gene63638:CDS
AACCAACATGGTCCTATGAG+AGG	0.642417	3.2:-23382103	MS.gene63638:CDS
AACCATTAATGACAAGATCT+TGG	0.435188	3.2:+23383976	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGTTGAAAGGAAGAAT+TGG	+	chr3.2:23384161-23384180	None:intergenic	30.0%
AAACCCCATTCAATTAATAG+CGG	+	chr3.2:23385048-23385067	None:intergenic	30.0%
AACACTGGCAATAACAATAT+AGG	-	chr3.2:23382407-23382426	MS.gene63638:intron	30.0%
AACCATTAATGACAAGATCT+TGG	+	chr3.2:23384780-23384799	None:intergenic	30.0%
AATTTCAAGATAAGAGATGC+TGG	+	chr3.2:23386861-23386880	None:intergenic	30.0%
ACAACCAAAAAGATTCATCA+AGG	+	chr3.2:23385888-23385907	None:intergenic	30.0%
AGAAAGATTGCAATAAAGTG+TGG	-	chr3.2:23382754-23382773	MS.gene63638:intron	30.0%
AGTAGTTAATGAATCTGTCA+TGG	-	chr3.2:23382331-23382350	MS.gene63638:intron	30.0%
AGTCAATGTTCAATCTCTTT+AGG	+	chr3.2:23383937-23383956	None:intergenic	30.0%
ATAATAATACCTGCAGCAAA+GGG	+	chr3.2:23385459-23385478	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	23381843	23386932	23381843	ID=MS.gene63638
chr3.2	mRNA	23381843	23386932	23381843	ID=MS.gene63638.t1;Parent=MS.gene63638
chr3.2	exon	23386329	23386932	23386329	ID=MS.gene63638.t1.exon1;Parent=MS.gene63638.t1
chr3.2	CDS	23386329	23386932	23386329	ID=cds.MS.gene63638.t1;Parent=MS.gene63638.t1
chr3.2	exon	23383307	23384941	23383307	ID=MS.gene63638.t1.exon2;Parent=MS.gene63638.t1
chr3.2	CDS	23383307	23384941	23383307	ID=cds.MS.gene63638.t1;Parent=MS.gene63638.t1
chr3.2	exon	23382095	23382157	23382095	ID=MS.gene63638.t1.exon3;Parent=MS.gene63638.t1
chr3.2	CDS	23382095	23382157	23382095	ID=cds.MS.gene63638.t1;Parent=MS.gene63638.t1
chr3.2	exon	23381843	23381847	23381843	ID=MS.gene63638.t1.exon4;Parent=MS.gene63638.t1
chr3.2	CDS	23381843	23381847	23381843	ID=cds.MS.gene63638.t1;Parent=MS.gene63638.t1

Gene Sequence

>MS.gene63638

ATGGCTGCAACTTTGGTTGGAGGTGCATTTCTATCTGCTTCTGTCCAAACCATGCTTGACCAACTAACTTCAACCGAGTTTCGTGATTTCATCAACAACAAAAAGCTGAATGTCTCACTCTTGAAGCAGTTACAAACAACGCTGCTGGTTCTTCAAGCTGTGCTAGATGATGCTGAGGAGAAGCAGATCAACAATCGTGCTGTCAAACAATGGCTTGATGACTTGAAAGATGCTGTCTTAGATGCTGAGGATTTACTGAACCAGATTAGTTATGAATCACTGCGATGCAAGGTGGAGAATACACAATCCACAAACAAAACTAATCAGGTGTGGAACTTCCTTTCTTCTCCTTTTAACACCTTCTACAGAGAGATCAATTCCCAAATGAAGATCATGTGTGATAGCTTGCAACTTTTCGCACAACATAAAGATATCCTTGGTTTGCAAAGTAAAATTGGTAAAGTTTCTCGTAGAACCCCTTCAAGTTCAGTAGTTAATGAATCTGTCATGGTTGGTAGAAATGATGATAAAGAGACAATAATGAACATGTTGCTATCAGAGAGTAACACTGGCAATAACAATATAGGCGTTGTTGCAATTTTAGGTATGGGAGGTGTCGGTAAAACGACACTTGCACAAGTTGTTTACAATGATGAAAAAGTTATAGAACACTTCGATCTCAGAGCCTGGAGTTGTGTATCAGATGATTTTGATATTTTGAGAGTAACCAAAACTCTTCTTGAATCTGTCACTTCAAAATTATGGGAAAGCAATAATCTTGATTTTCTTCGAGTTGAATTAATGAAAAATTTGAGGGACAAAAGATTTTTGATTGTTTTGGATGACTTGTGGAATGACAATTATAATGATTGGGATGAACTTGTAAATGCCCAAACCTAGAGGCAATTGGTAGAAAGATTGCAATAAAGTGTGGTGGACTGCCCATAGCTGCAAAAACACTTGGGGGACTTCTGCGTTCAAAGGTAGAAGCAAAGGAGTGGTCTGCAATTCTGAAAAGCGACTTATGGAAATTAGAGAATGATAATATTCTTCCTGCTTTGCTTTTGAGTTACCAATATCTCCCCTCTCATTTGAAAAGATGTTTTTCCTATTGTTCTATATTTCCAAAAGACTACCCACTTGATAGGAAGCGGTTGATTTTGTTGTGGATGGCTGAAGGCTTTCTTGAACATTCTCAAGGCGAAATATCAATGGAGGAAGTAGGTGATGACTACTTTGCTGAACTGTTATCGAGATCATTAATTCAACAACTGAATGGTGATTCCGGAGGACCAAAGTTTGTCATGCATGACCTTGTCAATGATTTAGCTACAGTCGTATCTGGAAAGAGTTGTTACAGGCTTGAATGTGGTGGTGATGTCTCTGAAAAGGTTCGTCATTTTTCATATAATCAAGAAATGTACGACATTTTCAAGAAGTTTAAGATTTTCAACAAATTCAAATCCTTGAGAAGCTTCCTACCCATTGAATACTATTGGAAACAAAATTTCTTATCTATAATGGTGGTTGATGATTTAATACCCACACTTGGAAGGTTGTGTGTGTTATCATTATCCAACTATAGTAATATCACCATTCTACCGGATTCAGTTGGCAATTTGGTTCAGTTGCGCTATCTAGATCTCTCACAGACTAAAATCAAAACTTTGCCTGACACAACATGCAACCTCTACTACTTGCAAACCTTGATTTTAGCATGGTGCTCAAATCTCACCGAATTGCCAGAACATATTGGAAAGTTAATTAATTTACGTCACCTTGATATCGATCAGACAAGTATAACAGCATTGCCAAAGCAAATTGTTGAACTTGAAAATCTTCAAACTTTAACTGTTTTTATAGTAGGCAAGCAAAATGTTGGTTTAAGTGTGAAGGAGCTTGCAAGGTTTCCTAAGCTACAGGGGAAGTTATTCATCAAGAACCTGCAGAATGTCATTGACGTTGTGGAGGCACATGATTCCAACTTGAAGAGAAAAAAAATATTGAGGAATTAACGCTACAATGGGGCGATGAAAGTGATGACTCGCTTAAAGGGAAGGATGTGCTTGATATGTTGCAACCCCCAACAGACCTAAAGAGATTGAACATTGACTTGTACGGTGGGACAAGCTTTCCCAATTGGTTGGGAGATTCTTCATTTTCTAAATTGTTGTCCCTTTGCATCGAAAATTGTGCGTACTGTGTGACAGTTCCACCACTTGGACAACTACCTTATCTCAAGGACCTACGTATAACAGGTATGTCGATATTGGAGACAATTGGTCCAGAGTTCTATGGCATAGTTGGAGGAGGTTCCAATTCTTCCTTTCAACCTTTTCCATCCCTTGAGATGTTGCAATTTGAGAACATGTCAAATTGGAAGGAATGGCTTCCCTTACAAGATGGCTTGTTTCCTTTTCCTTGCCTTAAAGCTCTGAAGTTATACAAGTGTCCTGAACTGAGGGGACATTTGCCTAGCCATCTTTCTTCCATAGAAGAAATTGACTTAAGTTGGTGTGACCGTCTCTTGGCAACACCACCTGCTCTGCATTGGCTCTCCTCAATAAAAAATATAGATATCTCTGGAGATTTACATTCTACTGAAAAGTTCCAATGGTCGTGGCTTGAGAGTGATTCACCGTCTCTACTGAAGGATATAACAATACGTTTCTTTGATAATATCTTCTCTCTTCCCAAAATGATTTTGAGCAGCAGTTGTCTTGACCTTTTGAGACTCCACGGTCTTCCATCTCTCACTGCATTTCCAGTGGAAGGTCTACCCACTTCTTTGAAGTCACTTCATATTTATGATTGCAAGGAGTTATCATTCTTGCCTCCTGAAACGTGGAGCAATTACACGTCGCTTTTGGAGTTGAATTTAGACGGTAGCTGTGGTTCACTTTCCTCCTTCCCACTGGATGGTTTTCCTAAGCTCCAAGATCTTGTCATTAATGGTTGTATTGGTCTGGAATCCATTTTTGTTTCAGAAAGTTCATCCTATAACCCCTCAACCCTCCAAAAACTTTGTGTATTTTCATGTAAAGCCCTTATATCACTACCTCAACGGATGGACACCCTCACCACTCTTGAAAGTTTGTATCTGCACCATCTTCCAAAACTAGAGTTGTCACTATGTGAAGGAGTTTTCTTACCTCCCAAATTACAAACAACTTCTATTTCATCTGTGAGAATAACAAAGATGCCGCTATTAATTGAATGGGGTTTCCAAAGCCTTACTTCTCTTTCAGAATTGTGTATTGAAGATAATGATGATATTGTTAACACCTTGTTGAAGGAGCAGTTGCTTCCCATTTCCTTAATGTTTTTGTCAATAAGTAATCTCTCTGAAATGAAACGCTTAGATGGAAATGGGCTTCGACACCTCTCATCTCTTGAAACACTTATATTTTTCAATTGTCAGTGGCTTGAGTCCTTGGCAGAGAACAAATTACCTTCCTCTCTCCGAAAACTTTCTTTCTACGATTGTCCAAGACTTGAGTCATTGCCAAAAGACAATCTCCCTTCCTCTCTCAAGATGCTGAGCTTTCGTAAATGCCCTGTTTTAGAAAAAATGCATGAAAGTGGTAGATTGAAAAATTGGTCCAGAATTACGCCCTTTGCTGCAGGTATTATTATCTATTACGTTACTAGTCGAGAATCATTTCTCAATTTCATGACTGTGATTGTGAAGTGTGATTATGAGCTACTAGAGTATAAATAAATGAAAACCAAGAAGTCCAATGCTTTGTTAATTTTTGCAAAATGAATTATAAATAAATTTTACAAACAAGTAGATTAGTAAGAATCCACGTTGTTAATTCCTGTTTCTAAGTATTGTCTCAGTTGTTTCATGTACAATGTCATTTATAGAACTTTTTGCTGCACTTTCCATGAGTTGAATAATTTAAATGAAACATTTCTCTACTCTCTATTAGATGCGGTTAATTATGATCTGGTAATGCTTGAAGATTTAGATCAAATGGATTGAGAATGCCAACAGCATGCAACTAACTTCCTGCATGTAAGTTTTCAATGTGCCCTTCCTTGATGAATCTTTTTGGTTGTTTTTACAAGTAATACTCAGTTCAATTAACTGATTTTCCATCAATTTTAATATCAACACCTAATGCATGTCCAAAAGAATGTTCTGAATTCTGATAGCATGAGTGATTTCTGTTCTGAATTCGTTAGATTTGCGTTCAAGTTGCAAAGATATCACTTAAAAGAATTCGTTATCTTTGTGACTATAGACAGTTGTTGGGTAAGGACCTGGCAGGATTGTGCTTAAAAGAATTGCAAAATCTAGAGCAGCAACTAAATGAACGATATTTGTCTATCTAGAAATGAAAGGTTCTTCACCAGTAGAATGAATATAATTAACGGTTTCTCTTTAAAATAATGATATGCAGATCCTAAAATCTTTAGCATTTGATCTTTCAGGAGGAATTACTCATGGGACAATTGGAGCAATCACAATGTTGTCTAATAACAGCTACAGGAAACAGCACTACTCCATAGCAGAATTTGAAAAAACCGCTATTGTTCCACTATGCGTGATTTAGTACAAAGTGTTATTAAATAGTGGTTATGGCACTGCTATCGCATCATAACCTTGCAGAATTTGAACAAATCCCTATTGTCTGCGATCTATGATTGACAACACTGATGTTGAGACAGGTACATTAGTCTTTCTATATGCAAAGATAATGTGTAGTTAAAATAAGTCTGCATCTATGAAGAAAACAAATAATTTTAGTATTTATGAACTGCGCCAGATCAGGATGAGCCTTTTACATTCATGTGCATTAACCAACATGGTCCTATGAGAGGCTGGAGAAGTAAATTTTTATTTCTTTGAAGTTTATTGATGAAAATTGACGTGTCTCGATTTTTTATATTTAATATAAATATATAAATTTGAAATACACAACTTCTTTGGAAAATTAGGTGAAAAAGGTAGACGTCTTTTTGTTCCTGTAACTGATTTGGTTAATTCTTATTCCAATGTTGATTTTCCAGCATCTCTTATCTTGAAATTAACTATGTCATTAGTAACTTGGTCTTTCTATCTATATCATGTTACAGATTGA

Protein sequence

>MS.gene63638.t1

MAATLVGGAFLSASVQTMLDQLTSTEFRDFINNKKLNVSLLKQLQTTLLVLQAVLDDAEEKQINNRAVKQWLDDLKDAVLDAEDLLNQISYESLRCKVENTQSTNKTNQVWNFLSSPFNTFYREINSQMKIMCDSLQLFAQHKDILGLQSKIGKVSRRTPSSSVVNESVMVGRNDDKETIMNMLLSESNTGNNNIGVVAILEKKNIEELTLQWGDESDDSLKGKDVLDMLQPPTDLKRLNIDLYGGTSFPNWLGDSSFSKLLSLCIENCAYCVTVPPLGQLPYLKDLRITGMSILETIGPEFYGIVGGGSNSSFQPFPSLEMLQFENMSNWKEWLPLQDGLFPFPCLKALKLYKCPELRGHLPSHLSSIEEIDLSWCDRLLATPPALHWLSSIKNIDISGDLHSTEKFQWSWLESDSPSLLKDITIRFFDNIFSLPKMILSSSCLDLLRLHGLPSLTAFPVEGLPTSLKSLHIYDCKELSFLPPETWSNYTSLLELNLDGSCGSLSSFPLDGFPKLQDLVINGCIGLESIFVSESSSYNPSTLQKLCVFSCKALISLPQRMDTLTTLESLYLHHLPKLELSLCEGVFLPPKLQTTSISSVRITKMPLLIEWGFQSLTSLSELCIEDNDDIVNTLLKEQLLPISLMFLSISNLSEMKRLDGNGLRHLSSLETLIFFNCQWLESLAENKLPSSLRKLSFYDCPRLESLPKDNLPSSLKMLSFRKCPVLEKMHESGRLKNWSRITPFAADQDEPFTFMCINQHGPMRGWRN