AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24882


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24882.t1 MTR_4g011720 90.794 315 28 1 1 315 1 314 0.0 593
MS.gene24882.t1 MTR_4g011690 83.492 315 52 0 1 315 1 315 0.0 558
MS.gene24882.t1 MTR_4g011720 90.171 234 22 1 1 234 1 233 4.44e-155 434
MS.gene24882.t1 MTR_7g090520 38.558 319 189 6 1 315 1 316 1.72e-78 242
MS.gene24882.t1 MTR_1g011600 37.979 287 163 7 9 283 8 291 2.24e-63 202
MS.gene24882.t1 MTR_3g108520 36.789 299 179 7 9 299 7 303 2.47e-61 198
MS.gene24882.t1 MTR_4g021380 34.824 313 193 7 4 307 2 312 2.47e-58 190
MS.gene24882.t1 MTR_4g021360 33.657 309 194 7 9 308 7 313 5.98e-55 181
MS.gene24882.t1 MTR_6g035160 50.000 138 66 3 164 299 29 165 9.97e-41 140
MS.gene24882.t1 MTR_8g030880 29.874 318 202 8 9 315 10 317 1.36e-36 134
MS.gene24882.t1 MTR_7g077670 28.882 322 211 9 3 315 5 317 6.45e-32 121
MS.gene24882.t1 MTR_1g070120 26.910 301 203 6 9 302 38 328 1.68e-30 118
MS.gene24882.t1 MTR_5g025090 28.571 287 189 7 9 293 5 277 9.03e-30 115
MS.gene24882.t1 MTR_5g025050 30.662 287 183 8 9 293 5 277 1.69e-29 114
MS.gene24882.t1 MTR_5g027230 29.492 295 189 9 1 293 1 278 1.72e-29 114
MS.gene24882.t1 MTR_5g024940 29.831 295 169 9 1 293 1 259 1.90e-29 114
MS.gene24882.t1 MTR_1g070135 27.303 304 194 6 9 300 38 326 2.40e-28 112
MS.gene24882.t1 MTR_1g070085 27.575 301 200 6 9 301 37 327 4.47e-28 111
MS.gene24882.t1 MTR_1g070085 27.575 301 200 6 9 301 37 327 4.47e-28 111
MS.gene24882.t1 MTR_8g024120 27.796 313 189 9 5 300 38 330 5.55e-27 108
MS.gene24882.t1 MTR_4g074130 28.866 291 185 10 9 293 40 314 1.63e-26 107
MS.gene24882.t1 MTR_8g074050 29.032 310 200 11 1 299 44 344 8.45e-26 105
MS.gene24882.t1 MTR_7g102820 28.704 324 192 10 8 307 66 374 9.35e-26 105
MS.gene24882.t1 MTR_5g032880 28.808 302 202 8 9 302 376 672 9.53e-26 107
MS.gene24882.t1 MTR_5g032880 27.986 293 192 7 9 294 38 318 6.27e-24 102
MS.gene24882.t1 MTR_5g032870 28.146 302 204 8 9 302 38 334 1.33e-25 105
MS.gene24882.t1 MTR_7g451860 29.866 298 174 11 9 293 41 316 6.92e-25 102
MS.gene24882.t1 MTR_7g047670 29.866 298 174 11 9 293 41 316 6.92e-25 102
MS.gene24882.t1 MTR_0009s0050 29.801 302 199 9 8 304 46 339 8.98e-25 102
MS.gene24882.t1 MTR_0009s0050 29.801 302 199 9 8 304 46 339 9.41e-25 102
MS.gene24882.t1 MTR_5g005570 29.010 293 180 12 9 293 37 309 1.40e-24 102
MS.gene24882.t1 MTR_1g070085 29.947 187 128 3 116 301 65 249 1.91e-24 100
MS.gene24882.t1 MTR_1g070100 29.255 188 130 3 116 302 61 246 4.43e-24 99.0
MS.gene24882.t1 MTR_3g092890 27.597 308 188 8 9 301 38 325 7.04e-24 100
MS.gene24882.t1 MTR_4g087090 27.609 297 202 6 9 293 30 325 1.08e-23 99.8
MS.gene24882.t1 MTR_1g011580 26.038 265 182 4 9 270 63 316 1.66e-23 99.4
MS.gene24882.t1 MTR_5g048570 28.990 307 205 9 3 304 39 337 2.09e-23 99.0
MS.gene24882.t1 MTR_7g062570 28.438 320 195 13 9 315 55 353 3.22e-23 98.6
MS.gene24882.t1 MTR_5g059130 26.667 300 190 8 9 294 44 327 3.34e-23 98.2
MS.gene24882.t1 MTR_4g100600 27.508 309 200 9 1 294 1 300 3.38e-23 97.8
MS.gene24882.t1 MTR_7g062580 28.349 321 204 12 4 315 50 353 4.13e-23 98.2
MS.gene24882.t1 MTR_4g015790 26.984 315 196 10 9 304 62 361 7.81e-23 97.8
MS.gene24882.t1 MTR_8g075890 26.384 307 210 9 9 307 39 337 7.82e-23 97.4
MS.gene24882.t1 MTR_0009s0050 32.984 191 124 4 116 304 53 241 1.08e-22 95.1
MS.gene24882.t1 MTR_8g075830 28.322 286 189 8 31 307 59 337 1.15e-22 97.1
MS.gene24882.t1 MTR_7g068650 28.296 311 197 10 9 304 54 353 1.16e-22 97.1
MS.gene24882.t1 MTR_0009s0050 32.984 191 124 4 116 304 53 241 1.85e-22 94.7
MS.gene24882.t1 MTR_1g033810 29.712 313 205 10 2 307 40 344 3.16e-22 95.9
MS.gene24882.t1 MTR_1g034140 25.974 308 189 10 9 293 27 318 3.39e-22 95.5
MS.gene24882.t1 MTR_5g025060 27.010 311 179 11 1 307 1 267 3.61e-22 94.4
MS.gene24882.t1 MTR_8g093930 27.402 281 184 10 33 300 70 343 4.24e-22 95.5
MS.gene24882.t1 MTR_8g074070 29.221 308 202 14 1 299 44 344 4.95e-22 95.1
MS.gene24882.t1 MTR_8g033380 33.333 174 113 3 124 296 176 347 5.62e-22 95.1
MS.gene24882.t1 MTR_2g437380 27.215 316 196 8 9 306 50 349 6.60e-22 95.1
MS.gene24882.t1 MTR_7g081710 27.097 310 202 9 9 307 49 345 6.75e-22 94.7
MS.gene24882.t1 MTR_6g015950 27.174 276 190 7 32 300 55 326 6.93e-22 94.4
MS.gene24882.t1 MTR_5g055680 28.713 303 201 10 8 304 46 339 8.61e-22 94.4
MS.gene24882.t1 MTR_3g070860 27.184 309 202 10 9 304 50 348 8.93e-22 94.4
MS.gene24882.t1 MTR_4g116010 28.328 293 188 10 3 286 44 323 1.01e-21 94.4
MS.gene24882.t1 MTR_0328s0030 28.846 312 207 11 2 307 38 340 1.22e-21 94.0
MS.gene24882.t1 MTR_1g062110 25.466 322 199 9 8 307 65 367 1.32e-21 94.4
MS.gene24882.t1 MTR_3g096500 25.987 304 198 10 10 296 67 360 1.69e-21 94.0
MS.gene24882.t1 MTR_6g464620 32.759 174 114 3 124 296 187 358 2.92e-21 93.2
MS.gene24882.t1 MTR_5g055900 27.907 301 206 7 8 304 46 339 3.90e-21 92.8
MS.gene24882.t1 MTR_3g063180 24.308 325 214 9 1 306 34 345 4.47e-21 92.4
MS.gene24882.t1 MTR_8g064200 27.707 314 209 10 2 307 50 353 5.53e-21 92.4
MS.gene24882.t1 MTR_3g058610 27.778 288 192 8 29 307 57 337 5.78e-21 92.0
MS.gene24882.t1 MTR_8g064200 27.707 314 209 10 2 307 45 348 5.91e-21 92.0
MS.gene24882.t1 MTR_2g102570 24.675 308 193 7 5 294 48 334 6.17e-21 92.4
MS.gene24882.t1 MTR_5g048470 26.752 314 212 10 2 307 46 349 6.21e-21 92.0
MS.gene24882.t1 MTR_7g063730 28.349 321 204 13 8 315 63 370 7.01e-21 92.0
MS.gene24882.t1 MTR_7g062600 27.419 310 205 9 4 304 46 344 7.20e-21 92.0
MS.gene24882.t1 MTR_5g055690 27.500 320 202 12 2 307 40 343 8.00e-21 91.7
MS.gene24882.t1 MTR_1g102070 27.957 279 179 8 33 296 82 353 9.94e-21 91.7
MS.gene24882.t1 MTR_5g022020 27.397 292 198 9 9 293 39 323 1.03e-20 91.7
MS.gene24882.t1 MTR_5g048550 28.065 310 208 10 1 304 39 339 1.32e-20 91.3
MS.gene24882.t1 MTR_1g070080 25.914 301 206 6 9 302 38 328 1.38e-20 90.9
MS.gene24882.t1 MTR_0009s0050 35.849 159 98 4 148 304 3 159 1.38e-20 87.4
MS.gene24882.t1 MTR_1g034120 25.305 328 197 9 4 294 13 329 5.35e-20 89.4
MS.gene24882.t1 MTR_3g045230 26.214 309 200 9 9 306 56 347 5.91e-20 89.4
MS.gene24882.t1 MTR_3g117420 29.630 189 127 6 116 300 158 344 5.97e-20 89.4
MS.gene24882.t1 MTR_3g043900 27.063 303 204 10 9 306 56 346 6.91e-20 89.0
MS.gene24882.t1 MTR_5g059140 25.874 286 188 8 9 282 42 315 1.10e-19 88.2
MS.gene24882.t1 MTR_1g081840 25.249 301 208 9 8 296 52 347 1.16e-19 88.6
MS.gene24882.t1 MTR_7g102720 26.282 312 196 8 9 306 37 328 1.19e-19 88.2
MS.gene24882.t1 MTR_4g087110 31.034 174 117 3 124 295 156 328 1.63e-19 88.2
MS.gene24882.t1 MTR_5g082750 26.168 321 200 9 4 304 44 347 1.70e-19 88.2
MS.gene24882.t1 MTR_5g055820 28.115 313 203 11 2 304 40 340 1.94e-19 87.8
MS.gene24882.t1 MTR_1g070110 31.016 187 98 3 116 302 68 223 1.97e-19 85.9
MS.gene24882.t1 MTR_2g025120 24.595 309 209 9 9 310 4 295 1.98e-19 87.4
MS.gene24882.t1 MTR_8g093980 24.920 313 221 6 2 305 52 359 2.01e-19 88.2
MS.gene24882.t1 MTR_2g072890 27.184 309 214 9 4 307 47 349 2.10e-19 87.8
MS.gene24882.t1 MTR_1g034060 25.000 328 198 9 4 294 13 329 3.08e-19 87.4
MS.gene24882.t1 MTR_0009s0480 27.500 320 212 11 2 315 39 344 3.46e-19 87.0
MS.gene24882.t1 MTR_5g055800 28.115 313 207 11 2 307 40 341 4.28e-19 87.0
MS.gene24882.t1 MTR_4g087100 26.207 290 183 8 28 295 48 328 6.45e-19 86.3
MS.gene24882.t1 MTR_3g072820 25.753 299 192 9 9 293 42 324 9.57e-19 85.5
MS.gene24882.t1 MTR_3g040410 26.996 263 182 6 7 266 4 259 9.89e-19 85.5
MS.gene24882.t1 MTR_2g437380 30.928 194 129 4 116 306 64 255 1.25e-18 84.3
MS.gene24882.t1 MTR_4g087140 31.638 177 115 5 124 296 156 330 1.26e-18 85.5
MS.gene24882.t1 MTR_3g117485 29.834 181 119 7 116 291 86 263 1.37e-18 84.3
MS.gene24882.t1 MTR_2g083000 24.828 290 196 8 9 293 33 305 2.34e-18 84.3
MS.gene24882.t1 MTR_3g117485 29.834 181 119 7 116 291 158 335 3.55e-18 84.3
MS.gene24882.t1 MTR_7g062550 26.814 317 214 10 4 315 55 358 4.77e-18 84.0
MS.gene24882.t1 MTR_8g074070 28.197 305 188 13 1 298 44 324 7.12e-18 83.2
MS.gene24882.t1 MTR_8g102600 24.601 313 205 11 4 294 7 310 7.67e-18 83.2
MS.gene24882.t1 MTR_6g092620 27.160 324 178 11 9 307 3 293 7.94e-18 82.8
MS.gene24882.t1 MTR_3g091360 25.753 299 212 7 1 295 44 336 1.01e-17 83.2
MS.gene24882.t1 MTR_5g065010 26.510 298 208 8 9 301 39 330 1.15e-17 82.8
MS.gene24882.t1 MTR_4g087120 30.857 175 118 3 124 296 156 329 1.38e-17 82.4
MS.gene24882.t1 MTR_5g048740 26.367 311 217 7 2 307 38 341 2.00e-17 82.0
MS.gene24882.t1 MTR_7g105070 27.044 318 204 12 2 306 52 354 2.28e-17 82.0
MS.gene24882.t1 MTR_4g123020 26.087 299 190 8 9 293 20 301 4.99e-17 80.5
MS.gene24882.t1 MTR_2g033270 26.791 321 205 10 8 313 13 318 7.57e-17 80.1
MS.gene24882.t1 MTR_7g016090 24.585 301 200 7 5 294 37 321 1.25e-16 79.7
MS.gene24882.t1 MTR_7g016090 24.585 301 200 7 5 294 35 319 1.28e-16 79.7
MS.gene24882.t1 MTR_5g048850 27.184 309 210 10 2 304 40 339 1.48e-16 79.7
MS.gene24882.t1 MTR_8g063070 25.237 317 215 11 2 306 60 366 1.84e-16 79.3
MS.gene24882.t1 MTR_4g087130 31.056 161 110 1 137 296 168 328 3.89e-16 78.6
MS.gene24882.t1 MTR_3g026150 25.243 309 210 11 2 301 53 349 6.71e-16 77.8
MS.gene24882.t1 MTR_2g069210 23.899 318 215 13 2 305 57 361 1.07e-15 77.4
MS.gene24882.t1 MTR_0009s0400 34.615 130 82 3 179 307 11 138 1.10e-15 73.6
MS.gene24882.t1 MTR_5g011250 25.163 306 203 9 7 296 45 340 1.18e-15 77.0
MS.gene24882.t1 MTR_3g088565 23.762 303 210 8 9 301 3 294 1.29e-15 76.3
MS.gene24882.t1 MTR_4g093840 31.928 166 108 4 118 280 169 332 1.29e-15 77.0
MS.gene24882.t1 MTR_6g088665 25.000 316 192 12 9 294 21 321 1.42e-15 76.6
MS.gene24882.t1 MTR_5g085330 26.433 314 191 13 9 301 5 299 1.50e-15 76.3
MS.gene24882.t1 MTR_3g091350 26.861 309 207 10 1 300 51 349 1.72e-15 76.6
MS.gene24882.t1 MTR_4g115990 29.885 174 117 4 116 286 131 302 1.75e-15 76.3
MS.gene24882.t1 MTR_8g009170 21.118 322 235 9 1 312 52 364 1.87e-15 76.6
MS.gene24882.t1 MTR_1g086550 33.051 118 78 1 176 293 197 313 2.59e-15 75.9
MS.gene24882.t1 MTR_1g032140 26.923 312 218 8 3 308 53 360 2.71e-15 75.9
MS.gene24882.t1 MTR_6g088665 25.159 314 195 12 9 294 21 322 2.77e-15 75.9
MS.gene24882.t1 MTR_8g102600 24.615 260 172 9 57 294 3 260 2.77e-15 75.1
MS.gene24882.t1 MTR_2g072910 25.902 305 213 9 9 307 51 348 3.58e-15 75.5
MS.gene24882.t1 MTR_2g069090 24.528 318 202 13 2 300 61 359 4.07e-15 75.5
MS.gene24882.t1 MTR_0056s0160 27.749 191 134 4 116 304 36 224 5.63e-15 73.6
MS.gene24882.t1 MTR_3g083370 24.407 295 204 8 9 297 4 285 5.94e-15 74.7
MS.gene24882.t1 MTR_3g026150 25.911 247 173 8 61 301 4 246 6.52e-15 73.6
MS.gene24882.t1 MTR_4g024660 22.830 311 227 8 9 312 67 371 9.64e-15 74.3
MS.gene24882.t1 MTR_3g072810 24.818 274 195 8 28 293 51 321 1.21e-14 73.9
MS.gene24882.t1 MTR_7g062560 26.190 294 192 10 9 296 62 336 1.25e-14 73.9
MS.gene24882.t1 MTR_3g088745 23.585 318 220 11 8 308 35 346 1.41e-14 73.9
MS.gene24882.t1 MTR_3g464530 26.978 278 159 11 35 293 49 301 1.55e-14 73.6
MS.gene24882.t1 MTR_1g070135 27.039 233 143 6 9 229 38 255 1.79e-14 72.8
MS.gene24882.t1 MTR_7g056347 22.222 306 212 11 9 300 67 360 1.86e-14 73.6
MS.gene24882.t1 MTR_2g069010 26.042 192 129 6 123 305 180 367 4.40e-14 72.4
MS.gene24882.t1 MTR_8g009160 20.679 324 230 11 2 312 53 362 7.80e-14 71.6
MS.gene24882.t1 MTR_2g068960 27.225 191 128 6 123 305 174 361 8.50e-14 71.6
MS.gene24882.t1 MTR_2g068840 26.027 292 189 10 4 280 49 328 8.65e-14 71.6
MS.gene24882.t1 MTR_8g028435 20.124 323 235 9 1 312 52 362 1.26e-13 71.2
MS.gene24882.t1 MTR_8g461330 33.929 112 73 1 182 293 203 313 2.59e-13 70.1
MS.gene24882.t1 MTR_1g070185 21.474 312 211 8 9 306 69 360 5.26e-13 69.3
MS.gene24882.t1 MTR_7g045650 29.482 251 148 12 9 246 60 294 9.58e-13 68.2
MS.gene24882.t1 MTR_4g132770 30.435 138 93 3 143 279 3 138 1.16e-12 65.5
MS.gene24882.t1 MTR_4g096840 24.113 282 190 8 29 293 39 313 2.08e-12 67.4
MS.gene24882.t1 MTR_2g019370 21.799 289 204 9 29 300 38 321 2.67e-12 67.0
MS.gene24882.t1 MTR_1g032250 34.884 129 79 5 175 301 235 360 5.69e-12 66.2
MS.gene24882.t1 MTR_2g069190 22.118 321 205 12 2 300 61 358 9.32e-12 65.5
MS.gene24882.t1 MTR_2g069020 28.889 180 121 6 122 296 177 354 1.10e-11 65.5
MS.gene24882.t1 MTR_1g032220 23.607 305 223 8 3 301 60 360 1.23e-11 65.1
MS.gene24882.t1 MTR_2g069020 28.889 180 121 6 122 296 177 354 1.30e-11 65.1
MS.gene24882.t1 MTR_7g016080 23.355 304 192 9 5 294 37 313 1.57e-11 64.7
MS.gene24882.t1 MTR_8g041620 22.667 300 204 8 2 286 61 347 6.57e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24882.t1 AT1G52820 61.039 308 119 1 8 315 11 317 4.82e-144 409
MS.gene24882.t1 AT4G03070 51.911 314 139 4 8 314 13 321 1.03e-113 332
MS.gene24882.t1 AT1G52820 60.793 227 88 1 8 234 11 236 5.31e-99 292
MS.gene24882.t1 AT1G52790 43.871 310 171 2 6 314 2 309 5.52e-97 289
MS.gene24882.t1 AT1G28030 46.372 317 165 4 3 315 7 322 7.19e-96 286
MS.gene24882.t1 AT1G52800 43.408 311 172 3 6 315 7 314 3.28e-91 274
MS.gene24882.t1 AT1G52810 43.614 321 142 7 1 315 2 289 1.17e-79 244
MS.gene24882.t1 AT1G80320 36.842 323 191 6 1 315 1 318 2.82e-67 213
MS.gene24882.t1 AT1G15540 34.969 326 194 7 1 315 1 319 1.60e-59 193
MS.gene24882.t1 AT1G15540 34.969 326 194 7 1 315 1 319 1.60e-59 193
MS.gene24882.t1 AT1G15540 34.969 326 194 7 1 315 4 322 1.67e-59 193
MS.gene24882.t1 AT1G15540 34.969 326 194 7 1 315 8 326 2.12e-59 193
MS.gene24882.t1 AT4G03050 43.243 185 102 1 5 189 4 185 1.08e-45 160
MS.gene24882.t1 AT4G03050 47.101 138 71 2 179 315 271 407 2.02e-40 146
MS.gene24882.t1 AT4G03050 43.243 185 102 1 5 189 4 185 1.08e-45 160
MS.gene24882.t1 AT4G03050 47.101 138 71 2 179 315 271 407 2.02e-40 146
MS.gene24882.t1 AT4G23340 28.713 303 195 8 8 301 9 299 3.42e-30 117
MS.gene24882.t1 AT2G36690 27.532 316 195 9 8 307 60 357 5.01e-26 106
MS.gene24882.t1 AT2G36690 27.532 316 195 9 8 307 60 357 5.01e-26 106
MS.gene24882.t1 AT5G05600 28.387 310 209 10 3 304 56 360 5.29e-23 98.2
MS.gene24882.t1 AT3G51240 26.384 307 210 9 9 307 38 336 5.38e-23 97.8
MS.gene24882.t1 AT5G51310 26.752 314 195 9 9 301 5 304 7.46e-23 97.1
MS.gene24882.t1 AT2G38240 30.847 295 183 13 9 293 48 331 2.00e-22 96.3
MS.gene24882.t1 AT1G80330 26.174 298 196 7 9 294 49 334 2.06e-22 96.3
MS.gene24882.t1 AT1G15550 25.253 297 204 4 5 294 53 338 3.51e-22 95.9
MS.gene24882.t1 AT1G14120 27.875 287 195 4 3 288 2 277 3.58e-22 95.1
MS.gene24882.t1 AT1G14120 27.875 287 195 4 3 288 2 277 3.58e-22 95.1
MS.gene24882.t1 AT1G14120 27.875 287 195 4 3 288 2 277 3.58e-22 95.1
MS.gene24882.t1 AT4G23340 32.418 182 114 4 128 301 1 181 5.32e-22 92.0
MS.gene24882.t1 AT4G21690 25.182 274 188 5 35 294 63 333 5.61e-22 95.1
MS.gene24882.t1 AT1G78550 25.733 307 217 9 3 304 47 347 9.13e-22 94.4
MS.gene24882.t1 AT3G21420 27.950 322 189 11 8 306 54 355 2.97e-21 93.2
MS.gene24882.t1 AT3G55970 26.688 311 201 8 6 300 49 348 4.95e-21 92.4
MS.gene24882.t1 AT1G14130 26.415 265 190 3 27 290 20 280 5.08e-21 91.7
MS.gene24882.t1 AT5G20550 27.273 308 191 11 9 298 45 337 1.08e-20 91.3
MS.gene24882.t1 AT3G13610 27.302 315 202 12 3 306 56 354 1.26e-20 91.3
MS.gene24882.t1 AT4G25420 25.806 310 212 10 9 305 61 365 1.48e-20 91.3
MS.gene24882.t1 AT1G78550 27.419 248 172 7 62 304 25 269 1.75e-20 89.7
MS.gene24882.t1 AT5G51810 25.418 299 203 9 9 296 63 352 2.04e-20 90.9
MS.gene24882.t1 AT2G44800 26.347 334 186 9 2 307 47 348 2.94e-20 90.1
MS.gene24882.t1 AT3G19010 25.243 309 198 9 9 295 28 325 3.02e-20 90.1
MS.gene24882.t1 AT3G19010 25.243 309 198 9 9 295 28 325 3.02e-20 90.1
MS.gene24882.t1 AT5G24530 26.452 310 190 9 9 300 38 327 3.02e-20 90.1
MS.gene24882.t1 AT3G51240 28.175 252 167 7 64 307 7 252 7.78e-20 87.8
MS.gene24882.t1 AT1G30040 26.087 276 189 6 29 293 41 312 9.26e-20 88.6
MS.gene24882.t1 AT4G21200 27.737 274 171 9 9 272 42 298 1.12e-19 88.6
MS.gene24882.t1 AT5G08640 23.906 297 206 8 6 293 40 325 1.20e-19 88.2
MS.gene24882.t1 AT5G08640 23.906 297 206 8 6 293 40 325 1.20e-19 88.2
MS.gene24882.t1 AT1G50960 28.571 259 177 7 8 264 39 291 1.27e-19 88.2
MS.gene24882.t1 AT5G63590 26.667 300 189 12 9 293 14 297 1.50e-19 87.4
MS.gene24882.t1 AT5G63600 24.074 270 191 6 32 294 49 311 2.83e-19 87.0
MS.gene24882.t1 AT5G63600 23.792 269 192 5 32 294 49 310 7.48e-19 85.9
MS.gene24882.t1 AT5G54000 32.632 190 119 7 116 299 73 259 8.22e-19 84.7
MS.gene24882.t1 AT5G54000 27.597 308 194 11 8 299 45 339 8.37e-19 85.9
MS.gene24882.t1 AT4G25310 29.032 279 184 9 36 307 76 347 9.30e-19 85.9
MS.gene24882.t1 AT5G07200 32.919 161 105 3 119 278 177 335 9.80e-19 86.3
MS.gene24882.t1 AT3G11180 27.673 318 206 12 9 315 95 399 1.60e-18 85.9
MS.gene24882.t1 AT3G11180 28.339 307 197 11 9 304 95 389 1.67e-18 85.9
MS.gene24882.t1 AT4G16330 28.796 191 129 5 117 306 67 251 7.47e-18 82.0
MS.gene24882.t1 AT1G80340 25.914 301 203 6 2 294 43 331 7.57e-18 83.2
MS.gene24882.t1 AT2G34555 25.246 305 203 8 9 302 27 317 7.83e-18 83.2
MS.gene24882.t1 AT5G43935 23.390 295 193 9 6 294 16 283 8.52e-18 82.4
MS.gene24882.t1 AT4G10490 30.220 182 120 5 117 294 148 326 8.58e-18 83.2
MS.gene24882.t1 AT1G55290 24.013 304 214 7 9 306 62 354 1.33e-17 82.8
MS.gene24882.t1 AT5G20400 25.658 304 204 10 9 300 45 338 1.77e-17 82.4
MS.gene24882.t1 AT3G19010 25.347 288 194 8 9 295 28 295 4.02e-17 80.9
MS.gene24882.t1 AT4G25300 27.010 311 205 11 8 307 51 350 4.99e-17 80.9
MS.gene24882.t1 AT4G16330 28.796 191 129 5 117 306 173 357 5.61e-17 80.9
MS.gene24882.t1 AT3G60290 27.653 311 207 10 5 307 48 348 7.24e-17 80.5
MS.gene24882.t1 AT2G19590 28.214 280 172 11 9 277 11 272 2.22e-16 78.6
MS.gene24882.t1 AT2G19590 31.818 176 109 5 110 277 85 257 2.43e-16 78.2
MS.gene24882.t1 AT5G43440 23.986 296 210 9 9 297 62 349 2.73e-16 79.0
MS.gene24882.t1 AT3G46500 23.279 305 203 10 9 294 17 309 2.89e-16 78.6
MS.gene24882.t1 AT1G60980 29.268 205 137 5 104 305 163 362 3.67e-16 78.6
MS.gene24882.t1 AT3G19000 24.272 309 202 8 9 295 32 330 3.97e-16 78.6
MS.gene24882.t1 AT4G10500 23.920 301 209 7 9 300 44 333 4.28e-16 78.2
MS.gene24882.t1 AT3G46500 24.221 289 188 10 2 271 10 286 8.12e-16 77.0
MS.gene24882.t1 AT1G77330 27.586 290 171 11 9 280 3 271 8.84e-16 77.0
MS.gene24882.t1 AT5G63595 22.814 263 173 7 5 264 21 256 1.11e-15 76.3
MS.gene24882.t1 AT1G17010 26.299 308 209 9 9 307 54 352 2.40e-15 76.3
MS.gene24882.t1 AT1G06620 24.275 276 196 6 32 300 83 352 2.53e-15 76.3
MS.gene24882.t1 AT1G02400 25.083 303 192 10 9 293 24 309 4.09e-15 75.1
MS.gene24882.t1 AT3G47190 26.316 304 177 13 9 293 32 307 1.37e-14 73.6
MS.gene24882.t1 AT5G43450 24.671 304 188 10 9 293 61 342 1.47e-14 73.9
MS.gene24882.t1 AT5G59540 24.752 303 193 11 9 293 61 346 1.69e-14 73.6
MS.gene24882.t1 AT5G07480 28.000 200 134 6 116 307 42 239 1.90e-14 72.4
MS.gene24882.t1 AT5G59530 24.221 289 191 10 9 282 58 333 2.18e-14 73.6
MS.gene24882.t1 AT1G78440 27.027 296 177 12 30 300 29 310 3.02e-14 72.8
MS.gene24882.t1 AT3G50210 24.611 321 203 12 9 295 8 323 3.17e-14 72.8
MS.gene24882.t1 AT3G50210 24.611 321 203 12 9 295 8 323 3.17e-14 72.8
MS.gene24882.t1 AT3G50210 24.611 321 203 12 9 295 8 323 3.17e-14 72.8
MS.gene24882.t1 AT5G07480 28.000 200 134 6 116 307 151 348 3.18e-14 72.8
MS.gene24882.t1 AT4G16765 27.128 188 126 5 117 294 50 236 3.41e-14 71.6
MS.gene24882.t1 AT4G16765 27.128 188 126 5 117 294 50 236 3.41e-14 71.6
MS.gene24882.t1 AT4G16765 27.128 188 126 5 117 294 50 236 3.41e-14 71.6
MS.gene24882.t1 AT3G61400 24.172 302 218 8 9 301 60 359 6.66e-14 72.0
MS.gene24882.t1 AT1G49390 29.319 191 128 6 116 302 73 260 1.30e-13 70.1
MS.gene24882.t1 AT3G46490 24.068 295 176 11 9 272 17 294 1.40e-13 70.9
MS.gene24882.t1 AT1G44090 30.488 164 99 5 146 299 202 360 1.49e-13 71.2
MS.gene24882.t1 AT4G25300 27.451 204 137 5 110 307 58 256 1.78e-13 69.7
MS.gene24882.t1 AT1G03410 28.723 188 125 6 119 300 165 349 2.05e-13 70.5
MS.gene24882.t1 AT1G12010 23.759 282 199 6 4 280 2 272 2.28e-13 70.1
MS.gene24882.t1 AT1G49390 29.319 191 128 6 116 302 152 339 3.52e-13 69.7
MS.gene24882.t1 AT4G16765 27.841 176 116 5 117 282 50 224 4.44e-13 68.2
MS.gene24882.t1 AT1G06650 26.316 190 127 6 119 300 172 356 4.57e-13 69.7
MS.gene24882.t1 AT1G47990 30.370 135 92 2 180 313 186 319 4.98e-13 68.9
MS.gene24882.t1 AT1G17020 24.573 293 206 10 9 293 53 338 8.49e-13 68.6
MS.gene24882.t1 AT3G49630 23.457 324 215 10 1 296 1 319 1.13e-12 68.2
MS.gene24882.t1 AT4G16765 34.783 115 71 2 183 294 77 190 1.38e-12 66.2
MS.gene24882.t1 AT5G05600 28.750 240 158 10 3 234 56 290 4.03e-12 66.2
MS.gene24882.t1 AT5G43440 24.082 245 148 7 9 236 62 285 6.85e-12 65.5
MS.gene24882.t1 AT3G12900 24.483 290 201 9 12 294 59 337 7.00e-12 65.9
MS.gene24882.t1 AT3G55970 26.122 245 154 8 6 234 49 282 7.82e-12 65.5
MS.gene24882.t1 AT3G46490 23.592 284 169 11 9 261 17 283 8.00e-12 65.5
MS.gene24882.t1 AT2G30840 26.374 182 128 6 123 300 170 349 9.01e-12 65.5
MS.gene24882.t1 AT2G25450 25.210 238 171 6 27 261 71 304 1.08e-11 65.5
MS.gene24882.t1 AT1G04380 24.658 292 202 10 9 293 45 325 1.18e-11 65.1
MS.gene24882.t1 AT5G63580 28.390 236 145 9 9 234 19 240 1.43e-11 63.9
MS.gene24882.t1 AT3G49630 23.052 308 209 10 11 296 14 315 1.99e-11 64.3
MS.gene24882.t1 AT5G63580 28.205 234 144 9 9 232 19 238 2.82e-11 63.2
MS.gene24882.t1 AT1G30040 25.000 216 147 6 30 234 42 253 4.64e-11 62.8
MS.gene24882.t1 AT4G25310 28.159 277 161 11 36 307 76 319 7.67e-11 62.8
MS.gene24882.t1 AT3G46500 28.758 153 99 5 127 271 31 181 9.51e-11 60.8
MS.gene24882.t1 AT3G46500 28.758 153 99 5 127 271 31 181 9.51e-11 60.8

Find 88 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4.1:+84227066 None:intergenic
GGTTATTAGAAAGATGATTT+TGG 0.215324 4.1:-84227237 MS.gene24882:CDS
TGACTTCAATAACCTCAATT+TGG 0.231298 4.1:-84227963 MS.gene24882:CDS
CATAACCCTGAGACGGTAAT+TGG 0.234620 4.1:+84227169 None:intergenic
GCTTATCCATTGTCCATCTT+TGG 0.274641 4.1:+84227034 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.302776 4.1:+84227661 None:intergenic
TAACTCCCAATTGGGACTTT+TGG 0.307103 4.1:+84227937 None:intergenic
AGGTTATTGAAGTCAATTAT+TGG 0.318169 4.1:+84227971 None:intergenic
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 4.1:-84227014 MS.gene24882:CDS
TTATGAGAGCATGGCCATTC+AGG 0.329147 4.1:-84227717 MS.gene24882:CDS
AAGCCTTATGATGGCTATAT+TGG 0.334407 4.1:-84227761 MS.gene24882:CDS
AGTGAAGTCCCAAGTCTATA+AGG 0.368829 4.1:-84227915 MS.gene24882:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 4.1:+84226720 None:intergenic
CTCCTCATCCACCAGCTCCT+CGG 0.382419 4.1:+84226629 None:intergenic
GGACTTCACTAACTCCCAAT+TGG 0.386844 4.1:+84227928 None:intergenic
TATAAGGCATTAGTAGAGTA+TGG 0.392107 4.1:-84227899 MS.gene24882:CDS
TTTATAATGTACCCTCCATT+GGG 0.397954 4.1:+84226657 None:intergenic
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4.1:-84226731 MS.gene24882:CDS
TGGAAGCCAAAAGTCCCAAT+TGG 0.405913 4.1:-84227943 MS.gene24882:CDS
TCCTCATCCACCAGCTCCTC+GGG 0.417316 4.1:+84226630 None:intergenic
CAAAAGGCTTAAAGAGTAAA+GGG 0.424456 4.1:+84226604 None:intergenic
ACTCAACCAATTACCGTCTC+AGG 0.434283 4.1:-84227175 MS.gene24882:CDS
GAAGTCAATTATTGGAAGCC+TGG 0.437451 4.1:+84227979 None:intergenic
CTCCTCGGAGAAAGAATGTA+TGG 0.449827 4.1:+84227277 None:intergenic
TCCCGAGGAGCTGGTGGATG+AGG 0.453378 4.1:-84226631 MS.gene24882:CDS
TCAAAAGGCTTAAAGAGTAA+AGG 0.456074 4.1:+84226603 None:intergenic
CTCCGAGGAGCTAATTGAGT+TGG 0.459847 4.1:-84227264 MS.gene24882:CDS
TTGAGCAGCTTAGTCTCTAA+AGG 0.462584 4.1:+84227794 None:intergenic
CTCTCATAAAGTGGAACTAC+AGG 0.468829 4.1:+84227731 None:intergenic
CTACTAATGCCTTATAGACT+TGG 0.484625 4.1:+84227906 None:intergenic
GGAAGCCAAAAGTCCCAATT+GGG 0.485504 4.1:-84227942 MS.gene24882:CDS
GGAGCTAATTGAGTTGGATC+AGG 0.485673 4.1:-84227258 MS.gene24882:CDS
GACTTCACTAACTCCCAATT+GGG 0.486736 4.1:+84227929 None:intergenic
TATAAAAGCTCCCGAGGAGC+TGG 0.488027 4.1:-84226640 MS.gene24882:CDS
ACCAATATCTTGTGGCCGGA+TGG 0.502522 4.1:-84227662 MS.gene24882:CDS
GTGTCTAATAAGCCTTATGA+TGG 0.509211 4.1:-84227770 MS.gene24882:CDS
ATGTCTTTACGAAGGTCTAA+AGG 0.510202 4.1:+84227848 None:intergenic
AAGTCAATTATTGGAAGCCT+GGG 0.510496 4.1:+84227980 None:intergenic
AGGAACTCAGCATAATCAAA+AGG 0.511727 4.1:+84226588 None:intergenic
TAAGATATTTGCATCCTGAA+TGG 0.514541 4.1:+84227703 None:intergenic
TTTGCTATCCGCACTTATTG+TGG 0.514546 4.1:-84226528 MS.gene24882:CDS
TGAGCAGCTTAGTCTCTAAA+GGG 0.515569 4.1:+84227795 None:intergenic
TGACCAATATAGCCATCATA+AGG 0.516797 4.1:+84227758 None:intergenic
ATCCAACTCAATTAGCTCCT+CGG 0.524094 4.1:+84227262 None:intergenic
GCTGCATTCGCCATTTCACC+GGG 0.528558 4.1:-84226730 MS.gene24882:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4.1:-84226693 MS.gene24882:CDS
TATCACTCTCGAGAAGGCAT+GGG 0.536634 4.1:-84226558 MS.gene24882:CDS
CACGACCAATATCTTGTGGC+CGG 0.542340 4.1:-84227666 MS.gene24882:CDS
TTATCACTCTCGAGAAGGCA+TGG 0.542864 4.1:-84226559 MS.gene24882:CDS
ATGGCCATGCTCTCATAAAG+TGG 0.548572 4.1:+84227722 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4.1:-84227131 MS.gene24882:CDS
AAAAGCTCCCGAGGAGCTGG+TGG 0.554268 4.1:-84226637 MS.gene24882:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4.1:-84227071 MS.gene24882:CDS
AATTATTGGAAGCCTGGGAG+TGG 0.556196 4.1:+84227985 None:intergenic
TTTAGGTGTTGAAAAGTGCA+TGG 0.562544 4.1:-84227210 MS.gene24882:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 4.1:-84227047 MS.gene24882:CDS
TACTAATGCCTTATAGACTT+GGG 0.564662 4.1:+84227907 None:intergenic
CATATTGTACCAAAATCAAG+TGG 0.585592 4.1:-84227075 MS.gene24882:CDS
TGAGCTCAGAAACCACTCCC+AGG 0.587869 4.1:-84227997 MS.gene24882:CDS
TTTCACCGGGTGATGATGAG+TGG 0.590400 4.1:-84226717 MS.gene24882:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4.1:+84226712 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4.1:+84227101 None:intergenic
AGTTCCACTTTATGAGAGCA+TGG 0.596616 4.1:-84227726 MS.gene24882:CDS
ATCACTCTCGAGAAGGCATG+GGG 0.600428 4.1:-84226557 MS.gene24882:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4.1:-84226752 MS.gene24882:intron
TTCACCGGGTGATGATGAGT+GGG 0.609819 4.1:-84226716 MS.gene24882:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 4.1:-84227040 MS.gene24882:CDS
ATGTATTATCACTCTCGAGA+AGG 0.611653 4.1:-84226564 MS.gene24882:CDS
TTGTTCTCTAACCCCAATGG+AGG 0.612012 4.1:-84226669 MS.gene24882:CDS
CTCAACCAATTACCGTCTCA+GGG 0.615222 4.1:-84227174 MS.gene24882:CDS
GGTGATGATGAGTGGGAATG+AGG 0.615235 4.1:-84226709 MS.gene24882:CDS
GGGTTGTTCTCTAACCCCAA+TGG 0.618714 4.1:-84226672 MS.gene24882:CDS
TGTACTTCATAACCCTGAGA+CGG 0.619668 4.1:+84227162 None:intergenic
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4.1:+84227108 None:intergenic
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4.1:-84227158 MS.gene24882:CDS
AAGCAAATATGTCTTTACGA+AGG 0.638765 4.1:+84227840 None:intergenic
AAAGCACGACCAATATCTTG+TGG 0.639997 4.1:-84227670 MS.gene24882:CDS
CTCGAGAGTGATAATACATG+AGG 0.642273 4.1:+84226568 None:intergenic
TTATAATGTACCCTCCATTG+GGG 0.646898 4.1:+84226658 None:intergenic
CTCAAACACCACAATAAGTG+CGG 0.648865 4.1:+84226520 None:intergenic
AACCATACATTCTTTCTCCG+AGG 0.652709 4.1:-84227279 MS.gene24882:CDS
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4.1:-84226704 MS.gene24882:CDS
TGTTCTCTAACCCCAATGGA+GGG 0.668675 4.1:-84226668 MS.gene24882:CDS
GTACATTATAAAAGCTCCCG+AGG 0.668840 4.1:-84226646 MS.gene24882:CDS
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4.1:-84226692 MS.gene24882:CDS
GCAGCTTAGTCTCTAAAGGG+AGG 0.706274 4.1:+84227798 None:intergenic
AGGTGTTGAAAAGTGCATGG+AGG 0.731560 4.1:-84227207 MS.gene24882:CDS
TCACTCTCGAGAAGGCATGG+GGG 0.750694 4.1:-84226556 MS.gene24882:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATGAAATTAATA+AGG + chr4.1:84227213-84227232 None:intergenic 10.0%
!! AAAGAAAATGAAATTAATAA+GGG + chr4.1:84227212-84227231 None:intergenic 10.0%
!! AAGAAAATGAAATTAATAAG+GGG + chr4.1:84227211-84227230 None:intergenic 15.0%
!! AATAATAAATTTCAACAACA+TGG + chr4.1:84227698-84227717 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG - chr4.1:84227585-84227604 MS.gene24882:intron 15.0%
!! GTTGTTGAAATTTATTATTA+TGG - chr4.1:84227699-84227718 MS.gene24882:CDS 15.0%
!! ATATATCTTGATTGAATCAT+CGG - chr4.1:84226909-84226928 MS.gene24882:intron 20.0%
!! CTTTATATCCTATTTATCAT+TGG - chr4.1:84227164-84227183 MS.gene24882:CDS 20.0%
!! TATTAGTTCCAATGATAAAT+AGG + chr4.1:84227175-84227194 None:intergenic 20.0%
!!! TTGATGGTTATTTATAAATG+AGG + chr4.1:84227584-84227603 None:intergenic 20.0%
! AGGTTATTGAAGTCAATTAT+TGG + chr4.1:84226551-84226570 None:intergenic 25.0%
! TATAAATGAGGAATAGTGAA+TGG + chr4.1:84227572-84227591 None:intergenic 25.0%
!! ATTACTCATGTAAATTTTGC+AGG - chr4.1:84227750-84227769 MS.gene24882:CDS 25.0%
!! GGTTATTAGAAAGATGATTT+TGG - chr4.1:84227282-84227301 MS.gene24882:CDS 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG - chr4.1:84227292-84227311 MS.gene24882:intron 25.0%
!!! CTAAAAATTTTGTTTCCATC+CGG + chr4.1:84226875-84226894 None:intergenic 25.0%
!!! GTCTCTTCAAGTATTTTTAA+GGG - chr4.1:84226982-84227001 MS.gene24882:CDS 25.0%
!!! TGTCTCTTCAAGTATTTTTA+AGG - chr4.1:84226981-84227000 MS.gene24882:CDS 25.0%
AAGCAAATATGTCTTTACGA+AGG + chr4.1:84226682-84226701 None:intergenic 30.0%
CAAAAGGCTTAAAGAGTAAA+GGG + chr4.1:84227918-84227937 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG - chr4.1:84227444-84227463 MS.gene24882:intron 30.0%
CTTCATTAGTTACCAATTGA+TGG + chr4.1:84227600-84227619 None:intergenic 30.0%
TAAGATATTTGCATCCTGAA+TGG + chr4.1:84226819-84226838 None:intergenic 30.0%
TACTAATGCCTTATAGACTT+GGG + chr4.1:84226615-84226634 None:intergenic 30.0%
TCAAAAGGCTTAAAGAGTAA+AGG + chr4.1:84227919-84227938 None:intergenic 30.0%
TGACTTCAATAACCTCAATT+TGG - chr4.1:84226556-84226575 MS.gene24882:CDS 30.0%
TTTATAATGTACCCTCCATT+GGG + chr4.1:84227865-84227884 None:intergenic 30.0%
TTTGTCCTTAACAAGTTTCA+GGG - chr4.1:84227034-84227053 MS.gene24882:CDS 30.0%
! CGGATGGAAACAAAATTTTT+AGG - chr4.1:84226873-84226892 MS.gene24882:intron 30.0%
! TATAAGGCATTAGTAGAGTA+TGG - chr4.1:84226620-84226639 MS.gene24882:CDS 30.0%
! TTTTATAATGTACCCTCCAT+TGG + chr4.1:84227866-84227885 None:intergenic 30.0%
!! CACTTGATTTTGGTACAATA+TGG + chr4.1:84227446-84227465 None:intergenic 30.0%
AAGTCAATTATTGGAAGCCT+GGG + chr4.1:84226542-84226561 None:intergenic 35.0%
AGGAACTCAGCATAATCAAA+AGG + chr4.1:84227934-84227953 None:intergenic 35.0%
ATGTATTATCACTCTCGAGA+AGG - chr4.1:84227955-84227974 MS.gene24882:CDS 35.0%
ATGTCTTTACGAAGGTCTAA+AGG + chr4.1:84226674-84226693 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG - chr4.1:84227388-84227407 MS.gene24882:intron 35.0%
CTACTAATGCCTTATAGACT+TGG + chr4.1:84226616-84226635 None:intergenic 35.0%
GTTTGTCCTTAACAAGTTTC+AGG - chr4.1:84227033-84227052 MS.gene24882:CDS 35.0%
TGACCAATATAGCCATCATA+AGG + chr4.1:84226764-84226783 None:intergenic 35.0%
TGATGCGACATAAAGTTGAA+AGG - chr4.1:84227062-84227081 MS.gene24882:CDS 35.0%
TTAGAGATGATGACCAAAGA+TGG - chr4.1:84227472-84227491 MS.gene24882:intron 35.0%
TTATAATGTACCCTCCATTG+GGG + chr4.1:84227864-84227883 None:intergenic 35.0%
TTGTACCAAAATCAAGTGGA+AGG - chr4.1:84227448-84227467 MS.gene24882:intron 35.0%
! AAGCCTTATGATGGCTATAT+TGG - chr4.1:84226758-84226777 MS.gene24882:intron 35.0%
! CTAAACCTTCCACTTGATTT+TGG + chr4.1:84227456-84227475 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG - chr4.1:84226749-84226768 MS.gene24882:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG - chr4.1:84227755-84227774 MS.gene24882:CDS 35.0%
!! ATCTTCCCTGAAACTTGTTA+AGG + chr4.1:84227042-84227061 None:intergenic 35.0%
!! TTTAGGTGTTGAAAAGTGCA+TGG - chr4.1:84227309-84227328 MS.gene24882:intron 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG + chr4.1:84227388-84227407 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG + chr4.1:84227387-84227406 None:intergenic 35.0%
AAAGCACGACCAATATCTTG+TGG - chr4.1:84226849-84226868 MS.gene24882:intron 40.0%
AACCATACATTCTTTCTCCG+AGG - chr4.1:84227240-84227259 MS.gene24882:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG + chr4.1:84227421-84227440 None:intergenic 40.0%
AGCTACAAGTCTTCTTCTTC+AGG - chr4.1:84227505-84227524 MS.gene24882:intron 40.0%
AGTGAAGTCCCAAGTCTATA+AGG - chr4.1:84226604-84226623 MS.gene24882:CDS 40.0%
AGTTCCACTTTATGAGAGCA+TGG - chr4.1:84226793-84226812 MS.gene24882:intron 40.0%
ATCCAACTCAATTAGCTCCT+CGG + chr4.1:84227260-84227279 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG - chr4.1:84227361-84227380 MS.gene24882:intron 40.0%
CTCGAGAGTGATAATACATG+AGG + chr4.1:84227954-84227973 None:intergenic 40.0%
CTCTCATAAAGTGGAACTAC+AGG + chr4.1:84226791-84226810 None:intergenic 40.0%
GAAGTCAATTATTGGAAGCC+TGG + chr4.1:84226543-84226562 None:intergenic 40.0%
GACTTCACTAACTCCCAATT+GGG + chr4.1:84226593-84226612 None:intergenic 40.0%
GCTTATCCATTGTCCATCTT+TGG + chr4.1:84227488-84227507 None:intergenic 40.0%
GTACATTATAAAAGCTCCCG+AGG - chr4.1:84227873-84227892 MS.gene24882:CDS 40.0%
TGAGCAGCTTAGTCTCTAAA+GGG + chr4.1:84226727-84226746 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG - chr4.1:84227479-84227498 MS.gene24882:intron 40.0%
TGTACTTCATAACCCTGAGA+CGG + chr4.1:84227360-84227379 None:intergenic 40.0%
TTGAGCAGCTTAGTCTCTAA+AGG + chr4.1:84226728-84226747 None:intergenic 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG - chr4.1:84227763-84227782 MS.gene24882:CDS 40.0%
! TAACTCCCAATTGGGACTTT+TGG + chr4.1:84226585-84226604 None:intergenic 40.0%
! TTTGCTATCCGCACTTATTG+TGG - chr4.1:84227991-84228010 MS.gene24882:CDS 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG - chr4.1:84227526-84227545 MS.gene24882:intron 40.0%
!!! GACTTTTGGCTTCCAAATTG+AGG + chr4.1:84226571-84226590 None:intergenic 40.0%
AAATGCATGTGACCACGATC+TGG + chr4.1:84227669-84227688 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG + chr4.1:84227668-84227687 None:intergenic 45.0%
AATTATTGGAAGCCTGGGAG+TGG + chr4.1:84226537-84226556 None:intergenic 45.0%
ACTCAACCAATTACCGTCTC+AGG - chr4.1:84227344-84227363 MS.gene24882:intron 45.0%
ATGGCCATGCTCTCATAAAG+TGG + chr4.1:84226800-84226819 None:intergenic 45.0%
CATAACCCTGAGACGGTAAT+TGG + chr4.1:84227353-84227372 None:intergenic 45.0%
CTCAACCAATTACCGTCTCA+GGG - chr4.1:84227345-84227364 MS.gene24882:intron 45.0%
CTCCTCGGAGAAAGAATGTA+TGG + chr4.1:84227245-84227264 None:intergenic 45.0%
GGAAGCCAAAAGTCCCAATT+GGG - chr4.1:84226577-84226596 MS.gene24882:CDS 45.0%
GGACTTCACTAACTCCCAAT+TGG + chr4.1:84226594-84226613 None:intergenic 45.0%
TGGAAGCCAAAAGTCCCAAT+TGG - chr4.1:84226576-84226595 MS.gene24882:CDS 45.0%
TGTTCTCTAACCCCAATGGA+GGG - chr4.1:84227851-84227870 MS.gene24882:CDS 45.0%
TTATCACTCTCGAGAAGGCA+TGG - chr4.1:84227960-84227979 MS.gene24882:CDS 45.0%
TTGTTCTCTAACCCCAATGG+AGG - chr4.1:84227850-84227869 MS.gene24882:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG - chr4.1:84227826-84227845 MS.gene24882:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG - chr4.1:84227827-84227846 MS.gene24882:CDS 45.0%
! TATCACTCTCGAGAAGGCAT+GGG - chr4.1:84227961-84227980 MS.gene24882:CDS 45.0%
! TTATGAGAGCATGGCCATTC+AGG - chr4.1:84226802-84226821 MS.gene24882:intron 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG - chr4.1:84227764-84227783 MS.gene24882:CDS 45.0%
!! AGGTGTTGAAAAGTGCATGG+AGG - chr4.1:84227312-84227331 MS.gene24882:intron 45.0%
!! GGAGCTAATTGAGTTGGATC+AGG - chr4.1:84227261-84227280 MS.gene24882:CDS 45.0%
ACCAATATCTTGTGGCCGGA+TGG - chr4.1:84226857-84226876 MS.gene24882:intron 50.0%
CACGACCAATATCTTGTGGC+CGG - chr4.1:84226853-84226872 MS.gene24882:intron 50.0%
CATTCCCACTCATCATCACC+CGG + chr4.1:84227810-84227829 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG + chr4.1:84227802-84227821 None:intergenic 50.0%
CTCCGAGGAGCTAATTGAGT+TGG - chr4.1:84227255-84227274 MS.gene24882:CDS 50.0%
GGGTTGTTCTCTAACCCCAA+TGG - chr4.1:84227847-84227866 MS.gene24882:CDS 50.0%
TATAAAAGCTCCCGAGGAGC+TGG - chr4.1:84227879-84227898 MS.gene24882:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG + chr4.1:84226861-84226880 None:intergenic 50.0%
TGATGAGTGGGAATGAGGCA+AGG - chr4.1:84227815-84227834 MS.gene24882:CDS 50.0%
! ATCACTCTCGAGAAGGCATG+GGG - chr4.1:84227962-84227981 MS.gene24882:CDS 50.0%
! GCAGCTTAGTCTCTAAAGGG+AGG + chr4.1:84226724-84226743 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG - chr4.1:84227810-84227829 MS.gene24882:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG + chr4.1:84227414-84227433 None:intergenic 50.0%
! TTCACCGGGTGATGATGAGT+GGG - chr4.1:84227803-84227822 MS.gene24882:CDS 50.0%
! TTTCACCGGGTGATGATGAG+TGG - chr4.1:84227802-84227821 MS.gene24882:CDS 50.0%
GCTGCATTCGCCATTTCACC+GGG - chr4.1:84227789-84227808 MS.gene24882:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG - chr4.1:84227788-84227807 MS.gene24882:CDS 55.0%
TGAGCTCAGAAACCACTCCC+AGG - chr4.1:84226522-84226541 MS.gene24882:CDS 55.0%
! TCACTCTCGAGAAGGCATGG+GGG - chr4.1:84227963-84227982 MS.gene24882:CDS 55.0%
AAAAGCTCCCGAGGAGCTGG+TGG - chr4.1:84227882-84227901 MS.gene24882:CDS 60.0%
CTCCTCATCCACCAGCTCCT+CGG + chr4.1:84227893-84227912 None:intergenic 60.0%
TCCTCATCCACCAGCTCCTC+GGG + chr4.1:84227892-84227911 None:intergenic 60.0%
TGATGTCGCAGCCCAGATCG+TGG - chr4.1:84227654-84227673 MS.gene24882:CDS 60.0%
TGCAGGCATGGTCAAACGGG+AGG - chr4.1:84227767-84227786 MS.gene24882:CDS 60.0%
! CTCGAGAAGGCATGGGGGCT+CGG - chr4.1:84227968-84227987 MS.gene24882:CDS 65.0%
! TCCCGAGGAGCTGGTGGATG+AGG - chr4.1:84227888-84227907 MS.gene24882:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 84226521 84228020 84226521 ID=MS.gene24882
chr4.1 mRNA 84226521 84228020 84226521 ID=MS.gene24882.t1;Parent=MS.gene24882
chr4.1 exon 84227647 84228020 84227647 ID=MS.gene24882.t1.exon1;Parent=MS.gene24882.t1
chr4.1 CDS 84227647 84228020 84227647 ID=cds.MS.gene24882.t1;Parent=MS.gene24882.t1
chr4.1 exon 84226980 84227304 84226980 ID=MS.gene24882.t1.exon2;Parent=MS.gene24882.t1
chr4.1 CDS 84226980 84227304 84226980 ID=cds.MS.gene24882.t1;Parent=MS.gene24882.t1
chr4.1 exon 84226521 84226769 84226521 ID=MS.gene24882.t1.exon3;Parent=MS.gene24882.t1
chr4.1 CDS 84226521 84226769 84226521 ID=cds.MS.gene24882.t1;Parent=MS.gene24882.t1
Gene Sequence

>MS.gene24882

ATGAGCTCAGAAACCACTCCCAGGCTTCCAATAATTGACTTCAATAACCTCAATTTGGAAGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTATAAGGCATTAGTAGAGTATGGTTGCTTTGAAGCAATTTTTGATAAAGTTCCTTTAGACCTTCGTAAAGACATATTTGCTTCAATAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTGCTCAATGTGTCTAATAAGCCTTATGATGGCTATATTGGTCAATATCCTGTAGTTCCACTTTATGAGAGCATGGCCATTCAGGATGCAAATATCTTAGAGAAAGTAAAAAGCACGACCAATATCTTGTGGCCGGATGGAAACAAAATTTTTAGGTACGTACTCATCAATATATCTTGATTGAATCATCGGTTAGAACATAAAGTTGTTAATATTTTAAAATAGTCTCTAACATCGAAAATGTCTCTTCAAGTATTTTTAAGGGTATTTTTTAGAGTTTTAAACTTCAAAAAGTTTGTCCTTAACAAGTTTCAGGGAAGATTGATGCGACATAAAGTTGAAAGGAAAAATCATTACTATAAAAACTCGTTGTTAACAATATCTCGAGTTTCTTCAAAGTGACGTGACTATAAAACTTTGTAAACTTTATATCCTATTTATCATTGGAACTAATATTTCTTTAATTAGCCCCTTATTAATTTCATTTTCTTTTGCAGTGAAACCATACATTCTTTCTCCGAGGAGCTAATTGAGTTGGATCAGGTTATTAGAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTGCATGGAGGAACACATGAACTCAACCAATTACCGTCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGTAAATTCCATTCACTATTCCTCATTTATAAATAACCATCAATTGGTAACTAATGAAGTTTTAAATCAGTGTCATGATCGCATAAAAATCTCTGATGTCGCAGCCCAGATCGTGGTCACATGCATTTATAAAACCATGTTGTTGAAATTTATTATTATGGCATTTGTTGAATTATATTGAAAATTTTCATTACTCATGTAAATTTTGCAGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTAACCCCAATGGAGGGTACATTATAAAAGCTCCCGAGGAGCTGGTGGATGAGGAGCACCCTTTACTCTTTAAGCCTTTTGATTATGCTGAGTTCCTCATGTATTATCACTCTCGAGAAGGCATGGGGGCTCGGTTTGCTATCCGCACTTATTGTGGTGTTTGA

Protein sequence

>MS.gene24882.t1

MSSETTPRLPIIDFNNLNLEAKSPNWELVKSQVYKALVEYGCFEAIFDKVPLDLRKDIFASIEELFDLPLETKLLNVSNKPYDGYIGQYPVVPLYESMAIQDANILEKVKSTTNILWPDGNKIFSETIHSFSEELIELDQVIRKMILESLGVEKCMEEHMNSTNYRLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSNPNGGYIIKAPEELVDEEHPLLFKPFDYAEFLMYYHSREGMGARFAIRTYCGV