AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71326


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71326.t1 MTR_0059s0060 97.118 347 7 1 1 344 13 359 0.0 681
MS.gene71326.t1 MTR_4g080120 40.741 216 121 2 128 336 179 394 1.08e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71326.t1 AT3G63490 66.189 349 101 7 1 340 1 341 1.08e-158 448
MS.gene71326.t1 AT3G63490 59.727 293 98 8 1 284 1 282 6.16e-105 310
MS.gene71326.t1 AT2G42710 42.326 215 118 2 128 336 188 402 3.87e-52 178

Find 82 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 4.2:-64431121 None:intergenic
GGAATCGTTCACTTGCCTTT+TGG 0.287837 4.2:+64433926 MS.gene71326:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 4.2:-64431120 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 4.2:-64428723 None:intergenic
CTTGAAGACAGCAATTTCTT+TGG 0.313872 4.2:+64431033 MS.gene71326:CDS
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 4.2:-64428687 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 4.2:+64428918 MS.gene71326:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.343136 4.2:+64432873 MS.gene71326:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 4.2:-64431099 None:intergenic
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 4.2:-64433695 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.357732 4.2:-64428722 None:intergenic
TTCGATGAAGCAAAACTTGC+AGG 0.364692 4.2:+64432862 MS.gene71326:CDS
TGCTAGCCTAGGGAAGATTC+TGG 0.368120 4.2:+64433649 MS.gene71326:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 4.2:-64428688 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 4.2:+64431257 MS.gene71326:CDS
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 4.2:-64428899 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 4.2:+64430973 MS.gene71326:intron
GGATTTGGCATGAGTCCTCT+TGG 0.392084 4.2:-64433674 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 4.2:-64432964 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 4.2:+64433874 MS.gene71326:intron
TTCTACTGTTTCTACAAACT+TGG 0.402665 4.2:-64431074 None:intergenic
GCTAGCCTAGGGAAGATTCT+GGG 0.405793 4.2:+64433650 MS.gene71326:CDS
GATCTGATAGAAGAGATAAA+AGG 0.407945 4.2:+64432907 MS.gene71326:CDS
AACAGGGAAAAGTTGAATAC+AGG 0.442667 4.2:+64433891 MS.gene71326:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 4.2:+64434147 MS.gene71326:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 4.2:+64434134 MS.gene71326:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 4.2:+64432918 MS.gene71326:CDS
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 4.2:-64431098 None:intergenic
TTGTTTCAGGTTGCTAGCCT+AGG 0.472690 4.2:+64433638 MS.gene71326:intron
GAATACAGGGCAGATAAAAC+AGG 0.473583 4.2:+64433905 MS.gene71326:CDS
TTCAGTCAGGTTAAATATCA+AGG 0.479582 4.2:+64434160 MS.gene71326:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 4.2:+64428887 MS.gene71326:CDS
GTTAGATTAACCGACTTAGT+AGG 0.492831 4.2:-64428758 None:intergenic
CGGGTGCGAAAGGTGTGTAC+TGG 0.503896 4.2:+64434105 MS.gene71326:CDS
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 4.2:-64428701 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 4.2:-64428686 None:intergenic
TTAATCTAACCTACCAGTCT+AGG 0.519742 4.2:+64428771 MS.gene71326:CDS
TGCGCACATATGCTCAGCAA+TGG 0.525735 4.2:+64434133 MS.gene71326:CDS
GTAAAATCGAAGACCTAGAC+TGG 0.533354 4.2:-64428784 None:intergenic
TGTTTCAGGTTGCTAGCCTA+GGG 0.533363 4.2:+64433639 MS.gene71326:intron
CTCATGCCAAATCCAAAAGC+TGG 0.536274 4.2:+64433683 MS.gene71326:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 4.2:-64431108 None:intergenic
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 4.2:-64428685 None:intergenic
GCTTCAAAACGAGGGGAGAG+AGG 0.550446 4.2:-64428736 None:intergenic
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 4.2:-64428694 None:intergenic
AACAAACCATCGGGTGCGAA+AGG 0.555511 4.2:+64434095 MS.gene71326:CDS
CTGATAGAAGAGATAAAAGG+AGG 0.556066 4.2:+64432910 MS.gene71326:CDS
TTGGCCCCAGAATCTTCCCT+AGG 0.558256 4.2:-64433655 None:intergenic
GTAGAGGCAAACAAACCATC+GGG 0.559336 4.2:+64434086 MS.gene71326:CDS
AAAATAGCCGTTCTTACTCA+AGG 0.563803 4.2:+64431290 MS.gene71326:CDS
AGCAGATTTGGTAGGTGGAG+AGG 0.564195 4.2:+64432885 MS.gene71326:CDS
TACACACCTTTCGCACCCGA+TGG 0.566838 4.2:-64434101 None:intergenic
TTCTCCAGATATGATGCCTA+AGG 0.567948 4.2:+64432960 MS.gene71326:CDS
AACGAGGGGAGAGAGGAAGA+AGG 0.573710 4.2:-64428729 None:intergenic
ATTACTTCTCAAGAGTGATA+GGG 0.582083 4.2:+64428919 MS.gene71326:CDS
ATAATCACCTTGAGTAAGAA+CGG 0.583105 4.2:-64431297 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 4.2:-64434158 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 4.2:+64428888 MS.gene71326:CDS
AGTAGAGGCAAACAAACCAT+CGG 0.588958 4.2:+64434085 MS.gene71326:CDS
GCAGGAGCAGATTTGGTAGG+TGG 0.594774 4.2:+64432880 MS.gene71326:CDS
AACTGTTGATGAAGATGAGA+AGG 0.595375 4.2:+64428838 MS.gene71326:CDS
CTTGCAGGAGCAGATTTGGT+AGG 0.596280 4.2:+64432877 MS.gene71326:CDS
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 4.2:-64428665 None:intergenic
TGTAACAGCTAATATTACTC+AGG 0.602046 4.2:+64433709 MS.gene71326:CDS
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 4.2:+64431250 MS.gene71326:intron
ACTTAGTAGGCTTCAAAACG+AGG 0.603839 4.2:-64428745 None:intergenic
ACAGGGAAAAGTTGAATACA+GGG 0.604006 4.2:+64433892 MS.gene71326:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 4.2:-64428780 None:intergenic
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 4.2:-64428664 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 4.2:-64428684 None:intergenic
CTAGCCTAGGGAAGATTCTG+GGG 0.617778 4.2:+64433651 MS.gene71326:CDS
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 4.2:-64428712 None:intergenic
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 4.2:-64431105 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.638508 4.2:+64433659 MS.gene71326:CDS
TAATTTGCAGAAATCAGTAG+AGG 0.640381 4.2:+64434070 MS.gene71326:intron
CTTAGTAGGCTTCAAAACGA+GGG 0.651809 4.2:-64428744 None:intergenic
AGCAACATCAGCAGTGACAG+CGG 0.657412 4.2:-64428813 None:intergenic
GTTGATGAAGATGAGAAGGA+TGG 0.658305 4.2:+64428842 MS.gene71326:CDS
TTAGTAGGCTTCAAAACGAG+GGG 0.672051 4.2:-64428743 None:intergenic
CGCACATATGCTCAGCAATG+GGG 0.673772 4.2:+64434135 MS.gene71326:CDS
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 4.2:+64431251 MS.gene71326:intron
GCTATAGCAGAATTCAAACA+GGG 0.697806 4.2:+64433875 MS.gene71326:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATTATTCATAAAATAAA+TGG - chr4.2:64430928-64430947 None:intergenic 10.0%
!! ATAATTTCATAAAATATACA+TGG + chr4.2:64430571-64430590 MS.gene71326:intron 10.0%
!! CAATACATATAATTAAAAAA+AGG - chr4.2:64432021-64432040 None:intergenic 10.0%
!!! TTTTTGTTGATTTTTTTTTT+TGG + chr4.2:64428986-64429005 MS.gene71326:intron 10.0%
!! AAAAAATATTAGTTAGAATG+AGG + chr4.2:64432160-64432179 MS.gene71326:intron 15.0%
!! AAAATAAAAAAAATACAGCA+AGG - chr4.2:64432333-64432352 None:intergenic 15.0%
!! ATTAGATTGAACATTAAATT+GGG + chr4.2:64432515-64432534 MS.gene71326:intron 15.0%
!! TAAAGTTAAACAATATAAAG+TGG + chr4.2:64432581-64432600 MS.gene71326:intron 15.0%
!! TAACAAATTATCTAGAAAAT+TGG - chr4.2:64429368-64429387 None:intergenic 15.0%
!!! AAAAAAACATTTTCTTGTAA+AGG + chr4.2:64431373-64431392 MS.gene71326:intron 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG + chr4.2:64431374-64431393 MS.gene71326:intron 15.0%
!!! ACAACCATTTTAAAAATATA+TGG - chr4.2:64431835-64431854 None:intergenic 15.0%
!!! ATGTCCATATATTTTTAAAA+TGG + chr4.2:64431828-64431847 MS.gene71326:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG - chr4.2:64433819-64433838 None:intergenic 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG + chr4.2:64433586-64433605 MS.gene71326:intron 15.0%
!!! TTATTATTTTTCCTTCTTTT+GGG + chr4.2:64433478-64433497 MS.gene71326:intron 15.0%
!! AAATTAAAGGTAGATATTGT+AGG - chr4.2:64431929-64431948 None:intergenic 20.0%
!! AAATTATTGCATATAATGGT+AGG - chr4.2:64430759-64430778 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG - chr4.2:64431124-64431143 None:intergenic 20.0%
!! ACTGTTGATCATTATATTTA+GGG - chr4.2:64431123-64431142 None:intergenic 20.0%
!! ATAATGATGACTATAATCAA+CGG - chr4.2:64433415-64433434 None:intergenic 20.0%
!! ATTCCAATTAACAAGTTATT+GGG - chr4.2:64432661-64432680 None:intergenic 20.0%
!! GATTAGATTGAACATTAAAT+TGG + chr4.2:64432514-64432533 MS.gene71326:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG - chr4.2:64433852-64433871 None:intergenic 20.0%
!! TATTCCAATTAACAAGTTAT+TGG - chr4.2:64432662-64432681 None:intergenic 20.0%
!! TGAAACTAAATTTATCAACT+TGG - chr4.2:64433156-64433175 None:intergenic 20.0%
!! TTAAAATGGTTGTAATTACT+AGG + chr4.2:64431842-64431861 MS.gene71326:intron 20.0%
!! TTTAGCATTTATTATTTGGA+TGG + chr4.2:64433590-64433609 MS.gene71326:intron 20.0%
!! TTTATAATGAACCCAAATTA+CGG + chr4.2:64429867-64429886 MS.gene71326:intron 20.0%
!!! AATTTTAATAACTACAGTTG+TGG + chr4.2:64429027-64429046 MS.gene71326:intron 20.0%
!!! ATCATTGAATTTTTCATGTT+TGG + chr4.2:64430891-64430910 MS.gene71326:intron 20.0%
!!! ATTTTTTTTTTTGGTCAAGT+GGG + chr4.2:64428995-64429014 MS.gene71326:intron 20.0%
!!! CAATCGATGTAAATATTTTA+CGG + chr4.2:64429781-64429800 MS.gene71326:intron 20.0%
!!! GTTATTATTTTTCCTTCTTT+TGG + chr4.2:64433477-64433496 MS.gene71326:intron 20.0%
!!! TAACTTGTTAATTGGAATAT+TGG + chr4.2:64432663-64432682 MS.gene71326:intron 20.0%
!!! TAATTTATAGTTCATTTTGC+AGG + chr4.2:64432832-64432851 MS.gene71326:intron 20.0%
!!! TATTATTTTTCCTTCTTTTG+GGG + chr4.2:64433479-64433498 MS.gene71326:intron 20.0%
!!! TTATTGTTTTCTTGTTTTTC+TGG + chr4.2:64428958-64428977 MS.gene71326:intron 20.0%
!!! TTTTCGATTTCAATTTTTGT+AGG - chr4.2:64431803-64431822 None:intergenic 20.0%
! AAATATTAGTTAGAATGAGG+AGG + chr4.2:64432163-64432182 MS.gene71326:intron 25.0%
! AAATGCTAAAAACAATGTGA+TGG - chr4.2:64433580-64433599 None:intergenic 25.0%
! AAATTTCAGAAGATATTGGA+AGG - chr4.2:64430683-64430702 None:intergenic 25.0%
! AAGATATAGTGAGAAATTGT+TGG + chr4.2:64430290-64430309 MS.gene71326:intron 25.0%
! AAGATTCAAAAGTTAGTAAC+TGG + chr4.2:64433079-64433098 MS.gene71326:intron 25.0%
! AATAGTTAATACACAACCAT+AGG - chr4.2:64431696-64431715 None:intergenic 25.0%
! AATGCTAAAAACAATGTGAT+GGG - chr4.2:64433579-64433598 None:intergenic 25.0%
! AATTAGAATAACCAAAGAGA+CGG - chr4.2:64432817-64432836 None:intergenic 25.0%
! AGACATCATAGATAAGTTAA+TGG + chr4.2:64432618-64432637 MS.gene71326:intron 25.0%
! AGCGAAATTATTGCATATAA+TGG - chr4.2:64430763-64430782 None:intergenic 25.0%
! ATCATAACAAATCAAGAGTT+TGG - chr4.2:64431903-64431922 None:intergenic 25.0%
! ATGAAGGAAAAAAAATTCAC+TGG + chr4.2:64430510-64430529 MS.gene71326:intron 25.0%
! ATTAAGGGAATTAATTGTGT+TGG + chr4.2:64429091-64429110 MS.gene71326:intron 25.0%
! ATTTCTGCAAATTAGAACAA+TGG - chr4.2:64434064-64434083 None:intergenic 25.0%
! CAGATAGAAAATTCAATTTG+GGG - chr4.2:64434014-64434033 None:intergenic 25.0%
! CGTAAAATATTTACATCGAT+TGG - chr4.2:64429783-64429802 None:intergenic 25.0%
! CTTGGAAATTCAAAAATTGA+GGG + chr4.2:64430991-64431010 MS.gene71326:CDS 25.0%
! GACATCATAGATAAGTTAAT+GGG + chr4.2:64432619-64432638 MS.gene71326:intron 25.0%
! GCAGATAGAAAATTCAATTT+GGG - chr4.2:64434015-64434034 None:intergenic 25.0%
! GTTAAACAATATAAAGTGGA+CGG + chr4.2:64432585-64432604 MS.gene71326:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG + chr4.2:64429394-64429413 MS.gene71326:intron 25.0%
! TCTTGGAAATTCAAAAATTG+AGG + chr4.2:64430990-64431009 MS.gene71326:CDS 25.0%
! TGATCTTAGAAAGAAACAAA+TGG - chr4.2:64430857-64430876 None:intergenic 25.0%
! TGCAGATAGAAAATTCAATT+TGG - chr4.2:64434016-64434035 None:intergenic 25.0%
! TGCTAAATTTCAGAAGATAT+TGG - chr4.2:64430687-64430706 None:intergenic 25.0%
! TTAAACAATATAAAGTGGAC+GGG + chr4.2:64432586-64432605 MS.gene71326:intron 25.0%
! TTAACTTATCTATGATGTCT+AGG - chr4.2:64432618-64432637 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG + chr4.2:64430763-64430782 MS.gene71326:intron 25.0%
! TTATATGGTTTAATGAGATC+CGG + chr4.2:64429409-64429428 MS.gene71326:intron 25.0%
! TTCACAAAAGTAGAACAAAT+CGG - chr4.2:64429335-64429354 None:intergenic 25.0%
! TTCCAATTAACAAGTTATTG+GGG - chr4.2:64432660-64432679 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG - chr4.2:64434063-64434082 None:intergenic 25.0%
!! ACCTTTAATTTACTAGCTAA+CGG + chr4.2:64431938-64431957 MS.gene71326:intron 25.0%
!! ATGAAACATAGCATTTTCAA+TGG + chr4.2:64432272-64432291 MS.gene71326:intron 25.0%
!! GATTGCATAATTCTTTTTAC+AGG + chr4.2:64433853-64433872 MS.gene71326:intron 25.0%
!! GTTCTTAACAATTTTCTGAT+AGG + chr4.2:64432689-64432708 MS.gene71326:intron 25.0%
!! GTTTTCACACATATTATCTA+GGG + chr4.2:64429979-64429998 MS.gene71326:intron 25.0%
!! TCTTTTGTCTTACTTTAAAC+TGG - chr4.2:64429531-64429550 None:intergenic 25.0%
!!! AATTTTAAGTGACTAGTACT+CGG + chr4.2:64431558-64431577 MS.gene71326:intron 25.0%
!!! ATTATTTTTCCTTCTTTTGG+GGG + chr4.2:64433480-64433499 MS.gene71326:intron 25.0%
!!! CAATTTTTTGTTCGTAATTG+TGG - chr4.2:64429301-64429320 None:intergenic 25.0%
!!! CTAACTTTAGAATGTAATGT+GGG - chr4.2:64431973-64431992 None:intergenic 25.0%
!!! GATTTTTTTTTTTGGTCAAG+TGG + chr4.2:64428994-64429013 MS.gene71326:intron 25.0%
!!! TATTAGTTGATGCTACATTT+TGG + chr4.2:64430141-64430160 MS.gene71326:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG - chr4.2:64430419-64430438 None:intergenic 25.0%
!!! TTTGTTCTACTTTTGTGAAT+TGG + chr4.2:64429336-64429355 MS.gene71326:intron 25.0%
!!! TTTTTAGAACCAGTGAATTT+AGG + chr4.2:64429638-64429657 MS.gene71326:intron 25.0%
AAATTGTTCTATTACTGGTG+TGG + chr4.2:64430037-64430056 MS.gene71326:intron 30.0%
AACGATTAACATCTCATGTA+GGG + chr4.2:64430467-64430486 MS.gene71326:intron 30.0%
AACGCAAATATCAAGAAACT+CGG - chr4.2:64431750-64431769 None:intergenic 30.0%
AAGTAGATGTACTTGATTCA+TGG - chr4.2:64431606-64431625 None:intergenic 30.0%
AATAGATAAGTCACTGAATC+CGG - chr4.2:64429431-64429450 None:intergenic 30.0%
AATTGTTCTATTACTGGTGT+GGG + chr4.2:64430038-64430057 MS.gene71326:intron 30.0%
ACCAGTAATAGAACAATTTG+TGG - chr4.2:64430036-64430055 None:intergenic 30.0%
ACCGTTAGCTAGTAAATTAA+AGG - chr4.2:64431942-64431961 None:intergenic 30.0%
ACGATTATATATGTATGCAG+TGG - chr4.2:64431533-64431552 None:intergenic 30.0%
ACTTACCTATTAAGAGAAGA+TGG - chr4.2:64431243-64431262 None:intergenic 30.0%
ACTTGGAAAAATTGTTCTGA+AGG + chr4.2:64429691-64429710 MS.gene71326:intron 30.0%
AGTGAATTTAGGAAGATGAA+GGG + chr4.2:64429649-64429668 MS.gene71326:intron 30.0%
ATAACAAATCAAGAGTTTGG+AGG - chr4.2:64431900-64431919 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG - chr4.2:64431300-64431319 None:intergenic 30.0%
ATCATAGATAAGTTAATGGG+TGG + chr4.2:64432622-64432641 MS.gene71326:intron 30.0%
ATTACTTCTCAAGAGTGATA+GGG + chr4.2:64428919-64428938 MS.gene71326:CDS 30.0%
ATTTATCCTCAACACACATT+AGG - chr4.2:64433130-64433149 None:intergenic 30.0%
CAATTATGTAAACTGCCTTA+TGG + chr4.2:64431419-64431438 MS.gene71326:intron 30.0%
GGTTCACGTATTTATGTTAT+AGG + chr4.2:64430531-64430550 MS.gene71326:intron 30.0%
GTTCTATGTTCATTCAAATC+AGG + chr4.2:64433187-64433206 MS.gene71326:intron 30.0%
TAACGATTAACATCTCATGT+AGG + chr4.2:64430466-64430485 MS.gene71326:intron 30.0%
TCTAAAAATACCGAATCAGT+TGG - chr4.2:64430066-64430085 None:intergenic 30.0%
TGATATTCCTCATCAAAACA+TGG + chr4.2:64432541-64432560 MS.gene71326:intron 30.0%
TGTAACAGCTAATATTACTC+AGG + chr4.2:64433709-64433728 MS.gene71326:CDS 30.0%
TTACTACTAAGCCTAAGAAA+GGG + chr4.2:64428888-64428907 MS.gene71326:CDS 30.0%
TTATTAAGCAGCGATTCAAT+TGG - chr4.2:64432775-64432794 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG + chr4.2:64434160-64434179 MS.gene71326:CDS 30.0%
TTCATCCATCTTCTCTTAAT+AGG + chr4.2:64431235-64431254 MS.gene71326:intron 30.0%
TTCATTCAAATCAGGTTCTT+TGG + chr4.2:64433195-64433214 MS.gene71326:intron 30.0%
TTGATATTTAACCTGACTGA+AGG - chr4.2:64434161-64434180 None:intergenic 30.0%
TTGTTAATTGGAATATTGGC+TGG + chr4.2:64432667-64432686 MS.gene71326:intron 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG - chr4.2:64433957-64433976 None:intergenic 30.0%
! ACGTGATTTTCAATTCTCTT+CGG - chr4.2:64429952-64429971 None:intergenic 30.0%
! GAATCAAGTACATCTACTTT+TGG + chr4.2:64431607-64431626 MS.gene71326:intron 30.0%
! GGTTTTCACACATATTATCT+AGG + chr4.2:64429978-64429997 MS.gene71326:intron 30.0%
! TAATTTGCAGAAATCAGTAG+AGG + chr4.2:64434070-64434089 MS.gene71326:intron 30.0%
! TATATTTAGGGTCAATGTTG+AGG - chr4.2:64431111-64431130 None:intergenic 30.0%
! TGGAATTGGCATGTTATTTA+TGG + chr4.2:64432242-64432261 MS.gene71326:intron 30.0%
! TTTTATCCCTAAGTCTATTG+TGG + chr4.2:64432222-64432241 MS.gene71326:intron 30.0%
!! CTAAGATCAAGTTGATTGTT+TGG + chr4.2:64430868-64430887 MS.gene71326:intron 30.0%
!! GCTAACTTTAGAATGTAATG+TGG - chr4.2:64431974-64431993 None:intergenic 30.0%
!! TTCTACTGTTTCTACAAACT+TGG - chr4.2:64431077-64431096 None:intergenic 30.0%
!! TTTCCTTCATCACACTTTTT+AGG - chr4.2:64430500-64430519 None:intergenic 30.0%
!!! ACTGATTCGGTATTTTTAGA+TGG + chr4.2:64430066-64430085 MS.gene71326:intron 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG - chr4.2:64431288-64431307 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG - chr4.2:64431287-64431306 None:intergenic 30.0%
!!! GTTTTCTTGTTTTTCTGGAT+GGG + chr4.2:64428963-64428982 MS.gene71326:intron 30.0%
!!! TGTTTTCTTGTTTTTCTGGA+TGG + chr4.2:64428962-64428981 MS.gene71326:intron 30.0%
AAAATAGCCGTTCTTACTCA+AGG + chr4.2:64431290-64431309 MS.gene71326:CDS 35.0%
AAAATTATCCGCCAAAGAGA+AGG - chr4.2:64432378-64432397 None:intergenic 35.0%
AACAGGGAAAAGTTGAATAC+AGG + chr4.2:64433891-64433910 MS.gene71326:CDS 35.0%
AAGATATTGAGCAACACCTT+AGG - chr4.2:64432979-64432998 None:intergenic 35.0%
AAGGGAATTAATTGTGTTGG+TGG + chr4.2:64429094-64429113 MS.gene71326:intron 35.0%
AAGTAGGCAATCAAATATGC+TGG - chr4.2:64430803-64430822 None:intergenic 35.0%
AATAACTACAGTTGTGGTTC+TGG + chr4.2:64429033-64429052 MS.gene71326:intron 35.0%
AATGAGGAGGCAAACTATTA+TGG + chr4.2:64432176-64432195 MS.gene71326:intron 35.0%
AATGGTTGTAATTACTAGGC+TGG + chr4.2:64431846-64431865 MS.gene71326:intron 35.0%
AATTGAAAATCACGTGACTG+TGG + chr4.2:64429957-64429976 MS.gene71326:intron 35.0%
ACAGGGAAAAGTTGAATACA+GGG + chr4.2:64433892-64433911 MS.gene71326:CDS 35.0%
ACGATTAACATCTCATGTAG+GGG + chr4.2:64430468-64430487 MS.gene71326:intron 35.0%
AGAGATAAAAGGAGGATACA+TGG + chr4.2:64432918-64432937 MS.gene71326:CDS 35.0%
AGCATATTTGATTGCCTACT+TGG + chr4.2:64430802-64430821 MS.gene71326:intron 35.0%
ATCCGAATTCAGTGACTTTA+AGG - chr4.2:64429508-64429527 None:intergenic 35.0%
ATGCAATAATTTCGCTTGGT+TGG + chr4.2:64430767-64430786 MS.gene71326:intron 35.0%
CAACCTGAAACAATCAACAA+TGG - chr4.2:64433631-64433650 None:intergenic 35.0%
CAGAACCTACTCAAAATTCA+AGG - chr4.2:64432128-64432147 None:intergenic 35.0%
CAGTAGCTAATGACTACAAA+TGG + chr4.2:64430323-64430342 MS.gene71326:intron 35.0%
CAGTGAATTTAGGAAGATGA+AGG + chr4.2:64429648-64429667 MS.gene71326:intron 35.0%
CATTACTTCTCAAGAGTGAT+AGG + chr4.2:64428918-64428937 MS.gene71326:CDS 35.0%
CCAATTCCACAATAGACTTA+GGG - chr4.2:64432231-64432250 None:intergenic 35.0%
CTATTTATTGTCCGTCTCTT+TGG + chr4.2:64432803-64432822 MS.gene71326:intron 35.0%
CTGAAATTTAGCATGAGTGA+GGG + chr4.2:64430694-64430713 MS.gene71326:intron 35.0%
CTTCATCTTCCTAAATTCAC+TGG - chr4.2:64429650-64429669 None:intergenic 35.0%
CTTGAAGACAGCAATTTCTT+TGG + chr4.2:64431033-64431052 MS.gene71326:CDS 35.0%
GCCACAAATTGTTCTATTAC+TGG + chr4.2:64430032-64430051 MS.gene71326:intron 35.0%
GCTATAGCAGAATTCAAACA+GGG + chr4.2:64433875-64433894 MS.gene71326:CDS 35.0%
GTAATAGAACAATTTGTGGC+CGG - chr4.2:64430032-64430051 None:intergenic 35.0%
GTGAATTTAGGAAGATGAAG+GGG + chr4.2:64429650-64429669 MS.gene71326:intron 35.0%
GTTACTACTAAGCCTAAGAA+AGG + chr4.2:64428887-64428906 MS.gene71326:CDS 35.0%
GTTGTGCAAAGTAAAATGGT+AGG - chr4.2:64432744-64432763 None:intergenic 35.0%
TACACAATCACTATCCAAGT+AGG - chr4.2:64430819-64430838 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG + chr4.2:64429560-64429579 MS.gene71326:intron 35.0%
TATGTAAACTGCCTTATGGA+TGG + chr4.2:64431423-64431442 MS.gene71326:intron 35.0%
TGTAAAGGGATGTGTATGAA+AGG + chr4.2:64431388-64431407 MS.gene71326:intron 35.0%
TTAATCTAACCTACCAGTCT+AGG + chr4.2:64428771-64428790 MS.gene71326:CDS 35.0%
TTATAGCCAGACTTTCTCTT+TGG + chr4.2:64430625-64430644 MS.gene71326:intron 35.0%
TTATGTTATAGGAGCTTCAG+AGG + chr4.2:64430542-64430561 MS.gene71326:intron 35.0%
! AACTGTTGATGAAGATGAGA+AGG + chr4.2:64428838-64428857 MS.gene71326:CDS 35.0%
! ACCATTTTACTTTGCACAAC+TGG + chr4.2:64432744-64432763 MS.gene71326:intron 35.0%
! ACTCCTAAAAAGTGTGATGA+AGG + chr4.2:64430494-64430513 MS.gene71326:intron 35.0%
! AGGAGAACATGATTTGCAAA+TGG - chr4.2:64433110-64433129 None:intergenic 35.0%
! AGGGAATTAATTGTGTTGGT+GGG + chr4.2:64429095-64429114 MS.gene71326:intron 35.0%
! ATCTCTTTTCTCATTGCGAT+CGG + chr4.2:64429595-64429614 MS.gene71326:intron 35.0%
! CCATTTTACTTTGCACAACT+GGG + chr4.2:64432745-64432764 MS.gene71326:intron 35.0%
! CGATGTAAATATTTTACGGC+AGG + chr4.2:64429785-64429804 MS.gene71326:intron 35.0%
! GTTAGATTAACCGACTTAGT+AGG - chr4.2:64428761-64428780 None:intergenic 35.0%
! TCTGAAATTTAGCATGAGTG+AGG + chr4.2:64430693-64430712 MS.gene71326:intron 35.0%
! TGAAAGTCTAGTTTGAGCTT+GGG + chr4.2:64432455-64432474 MS.gene71326:intron 35.0%
! TTGAAAGTCTAGTTTGAGCT+TGG + chr4.2:64432454-64432473 MS.gene71326:intron 35.0%
! TTGCCATTGTTGATTGTTTC+AGG + chr4.2:64433625-64433644 MS.gene71326:intron 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG + chr4.2:64433949-64433968 MS.gene71326:CDS 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG + chr4.2:64431618-64431637 MS.gene71326:intron 35.0%
!! CACCCCAATAACTTGTTAAT+TGG + chr4.2:64432655-64432674 MS.gene71326:intron 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG - chr4.2:64433944-64433963 None:intergenic 35.0%
!! TACCAAGGATTGGTTACATT+GGG - chr4.2:64429901-64429920 None:intergenic 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG + chr4.2:64431619-64431638 MS.gene71326:intron 35.0%
!!! GATTCGGTATTTTTAGATGG+AGG + chr4.2:64430069-64430088 MS.gene71326:intron 35.0%
AAAACATGGACGATGGTTGA+TGG + chr4.2:64432555-64432574 MS.gene71326:intron 40.0%
AAAACTTGCAGGAGCAGATT+TGG + chr4.2:64432873-64432892 MS.gene71326:CDS 40.0%
AACACCTTAGGCATCATATC+TGG - chr4.2:64432967-64432986 None:intergenic 40.0%
AAGAGAAGGATCAAAGGAAC+AGG - chr4.2:64432364-64432383 None:intergenic 40.0%
AATGCAGCTTTCCCTTTCTT+AGG - chr4.2:64428902-64428921 None:intergenic 40.0%
ACTCGGTTGTTATGCACAAA+TGG - chr4.2:64431733-64431752 None:intergenic 40.0%
ACTTAGTAGGCTTCAAAACG+AGG - chr4.2:64428748-64428767 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG - chr4.2:64428690-64428709 None:intergenic 40.0%
AGAATCTCTTAGATCTCACC+TGG - chr4.2:64430973-64430992 None:intergenic 40.0%
AGAGAAGGATCAAAGGAACA+GGG - chr4.2:64432363-64432382 None:intergenic 40.0%
AGGAGGCAAACTATTATGGA+GGG + chr4.2:64432180-64432199 MS.gene71326:intron 40.0%
AGTAGAGGCAAACAAACCAT+CGG + chr4.2:64434085-64434104 MS.gene71326:CDS 40.0%
CAATGTAACCAATCCTTGGT+AGG + chr4.2:64429900-64429919 MS.gene71326:intron 40.0%
CCCAGTTGTGCAAAGTAAAA+TGG - chr4.2:64432748-64432767 None:intergenic 40.0%
CCCTAAGTCTATTGTGGAAT+TGG + chr4.2:64432228-64432247 MS.gene71326:intron 40.0%
CGGTATGTGTTACGTGTATA+CGG - chr4.2:64429932-64429951 None:intergenic 40.0%
CTGAAGTCACCTTGAATTAC+CGG + chr4.2:64429482-64429501 MS.gene71326:intron 40.0%
CTTAGTAGGCTTCAAAACGA+GGG - chr4.2:64428747-64428766 None:intergenic 40.0%
CTTCGTGTGTGGATAACTAT+GGG + chr4.2:64431658-64431677 MS.gene71326:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG + chr4.2:64433905-64433924 MS.gene71326:CDS 40.0%
GCCAATTCCACAATAGACTT+AGG - chr4.2:64432232-64432251 None:intergenic 40.0%
GCTACAAGGTTAGGTATAAG+TGG - chr4.2:64430102-64430121 None:intergenic 40.0%
GGACATGGACATAAGATGAT+AGG + chr4.2:64431444-64431463 MS.gene71326:intron 40.0%
GGCCTTAAAGTCACTGAATT+CGG + chr4.2:64429503-64429522 MS.gene71326:intron 40.0%
GGCTATAGCAGAATTCAAAC+AGG + chr4.2:64433874-64433893 MS.gene71326:intron 40.0%
GGTGAGATCTAAGAGATTCT+TGG + chr4.2:64430973-64430992 MS.gene71326:intron 40.0%
GTAAAATCGAAGACCTAGAC+TGG - chr4.2:64428787-64428806 None:intergenic 40.0%
GTAGTCATTAGCTACTGAAG+AGG - chr4.2:64430320-64430339 None:intergenic 40.0%
GTCCAGTTACTTGGCATTTA+AGG - chr4.2:64432308-64432327 None:intergenic 40.0%
GTCCTTAAATGCCAAGTAAC+TGG + chr4.2:64432303-64432322 MS.gene71326:intron 40.0%
GTTCCTTTGATCCTTCTCTT+TGG + chr4.2:64432364-64432383 MS.gene71326:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG + chr4.2:64431251-64431270 MS.gene71326:intron 40.0%
TATGTCCATGTCCATCCATA+AGG - chr4.2:64431437-64431456 None:intergenic 40.0%
TCTGAGCATAGCATCAAGTA+TGG - chr4.2:64433292-64433311 None:intergenic 40.0%
TGATGCTATGCTCAGATTCA+TGG + chr4.2:64433296-64433315 MS.gene71326:intron 40.0%
TGCTGTACGTGAAAATTCTC+AGG - chr4.2:64430216-64430235 None:intergenic 40.0%
TGTTCTCCTAATGTGTGTTG+AGG + chr4.2:64433121-64433140 MS.gene71326:intron 40.0%
TTAATAGGTAAGTCTGCCGA+AGG + chr4.2:64431250-64431269 MS.gene71326:intron 40.0%
TTAGTAGGCTTCAAAACGAG+GGG - chr4.2:64428746-64428765 None:intergenic 40.0%
TTCACTTTCCATGTTTCACC+AGG + chr4.2:64430952-64430971 MS.gene71326:intron 40.0%
TTCGATGAAGCAAAACTTGC+AGG + chr4.2:64432862-64432881 MS.gene71326:CDS 40.0%
TTCTCCAGATATGATGCCTA+AGG + chr4.2:64432960-64432979 MS.gene71326:CDS 40.0%
TTTCCACCAAAGAGAAAGTC+TGG - chr4.2:64430634-64430653 None:intergenic 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG + chr4.2:64429259-64429278 MS.gene71326:intron 40.0%
! ATAGGTCTTTTCTCTCGAAG+TGG + chr4.2:64431462-64431481 MS.gene71326:intron 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG - chr4.2:64431108-64431127 None:intergenic 40.0%
! GGGGGTATAATCCGTAATTT+GGG - chr4.2:64429881-64429900 None:intergenic 40.0%
! GTTGATGAAGATGAGAAGGA+TGG + chr4.2:64428842-64428861 MS.gene71326:CDS 40.0%
! TGGGGGTATAATCCGTAATT+TGG - chr4.2:64429882-64429901 None:intergenic 40.0%
! TTTTGTGCTCACTGCTCATT+TGG + chr4.2:64430378-64430397 MS.gene71326:intron 40.0%
!! AAGTTAGCTGCTCACTTTTG+AGG + chr4.2:64431986-64432005 MS.gene71326:intron 40.0%
!! ACCAAGGATTGGTTACATTG+GGG - chr4.2:64429900-64429919 None:intergenic 40.0%
!! ACGCACCTTGAATTTTGAGT+AGG + chr4.2:64432120-64432139 MS.gene71326:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG - chr4.2:64429494-64429513 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG - chr4.2:64428715-64428734 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG - chr4.2:64429902-64429921 None:intergenic 40.0%
!! GAATTCAGTGACTTTAAGGC+CGG - chr4.2:64429504-64429523 None:intergenic 40.0%
!!! CGTTTTGAAGCCTACTAAGT+CGG + chr4.2:64428748-64428767 MS.gene71326:CDS 40.0%
AACGGAGAGAAGAAGGAGAA+AGG - chr4.2:64428697-64428716 None:intergenic 45.0%
AACTGCCTTATGGATGGACA+TGG + chr4.2:64431429-64431448 MS.gene71326:intron 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG - chr4.2:64428688-64428707 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG - chr4.2:64428783-64428802 None:intergenic 45.0%
ACACAGAATCCCCCAAAAGA+AGG - chr4.2:64433492-64433511 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG - chr4.2:64431165-64431184 None:intergenic 45.0%
AGATCTCACCTGGTGAAACA+TGG - chr4.2:64430963-64430982 None:intergenic 45.0%
CACGTCGTCAATCAAAAGTG+TGG + chr4.2:64429258-64429277 MS.gene71326:intron 45.0%
CATCAGAGCGTGACAATACA+GGG + chr4.2:64433544-64433563 MS.gene71326:intron 45.0%
CCTCATCAAAACATGGACGA+TGG + chr4.2:64432548-64432567 MS.gene71326:intron 45.0%
CCTTTGATCCTTCTCTTTGG+CGG + chr4.2:64432367-64432386 MS.gene71326:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG + chr4.2:64433683-64433702 MS.gene71326:CDS 45.0%
CTTCGCTTGCATATCCTTCA+TGG + chr4.2:64433242-64433261 MS.gene71326:intron 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG - chr4.2:64428689-64428708 None:intergenic 45.0%
GAATTGAACTGCTTCGTGTG+TGG + chr4.2:64431647-64431666 MS.gene71326:intron 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG - chr4.2:64428691-64428710 None:intergenic 45.0%
GAGCATAGCATCAAGTATGG+TGG - chr4.2:64433289-64433308 None:intergenic 45.0%
GAGGAGGCAAACTATTATGG+AGG + chr4.2:64432179-64432198 MS.gene71326:intron 45.0%
GCAAACTATTATGGAGGGTG+AGG + chr4.2:64432185-64432204 MS.gene71326:intron 45.0%
GCTTCGTGTGTGGATAACTA+TGG + chr4.2:64431657-64431676 MS.gene71326:intron 45.0%
GGAAAAGAACGGAGAGAAGA+AGG - chr4.2:64428704-64428723 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG - chr4.2:64428668-64428687 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG - chr4.2:64428667-64428686 None:intergenic 45.0%
GGTTCCAAACCCTCTTTGAA+GGG + chr4.2:64431867-64431886 MS.gene71326:intron 45.0%
GTAAGTACACTGTCAGACAG+TGG + chr4.2:64429217-64429236 MS.gene71326:intron 45.0%
GTAGAGGCAAACAAACCATC+GGG + chr4.2:64434086-64434105 MS.gene71326:CDS 45.0%
GTCAATGTTGAGGCGGAAAT+GGG - chr4.2:64431101-64431120 None:intergenic 45.0%
GTGACAATACAGGGACCAAT+GGG + chr4.2:64433553-64433572 MS.gene71326:intron 45.0%
GTTCGCGACTATGCTTCATA+TGG - chr4.2:64429126-64429145 None:intergenic 45.0%
GTTGCAGATTTCAGCCATGA+AGG - chr4.2:64433259-64433278 None:intergenic 45.0%
TAACCTTGTAGCTGTGTCGT+GGG + chr4.2:64430110-64430129 MS.gene71326:intron 45.0%
TAAGCAGCGATTCAATTGGC+TGG - chr4.2:64432771-64432790 None:intergenic 45.0%
TAGCCAGACTTTCTCTTTGG+TGG + chr4.2:64430628-64430647 MS.gene71326:intron 45.0%
TCAACAATGGCAACTGACTG+AGG - chr4.2:64433618-64433637 None:intergenic 45.0%
TGGTTCCAAACCCTCTTTGA+AGG + chr4.2:64431866-64431885 MS.gene71326:intron 45.0%
TTTCTCATTGCGATCGGAAG+TGG + chr4.2:64429601-64429620 MS.gene71326:intron 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG - chr4.2:64433692-64433711 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG - chr4.2:64431269-64431288 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG + chr4.2:64433926-64433945 MS.gene71326:CDS 45.0%
! TGGGTTCATTGAGTTGCCTA+TGG + chr4.2:64431677-64431696 MS.gene71326:intron 45.0%
!! AAACAATGTGATGGGCCCAT+TGG - chr4.2:64433571-64433590 None:intergenic 45.0%
!! CAGTTGTGGTTCTGGTTTCA+TGG + chr4.2:64429041-64429060 MS.gene71326:intron 45.0%
!! CCAAGGATTGGTTACATTGG+GGG - chr4.2:64429899-64429918 None:intergenic 45.0%
!! TGTTTCAGGTTGCTAGCCTA+GGG + chr4.2:64433639-64433658 MS.gene71326:intron 45.0%
!! TTGTCCTGGCATTGACATAG+AGG + chr4.2:64431496-64431515 MS.gene71326:intron 45.0%
!! TTGTTTCAGGTTGCTAGCCT+AGG + chr4.2:64433638-64433657 MS.gene71326:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG + chr4.2:64431625-64431644 MS.gene71326:intron 45.0%
!!! CCATCGTCCATGTTTTGATG+AGG - chr4.2:64432551-64432570 None:intergenic 45.0%
!! AATACATATAATTAAAAAAA+GGG - chr4.2:64432020-64432039 None:intergenic 5.0%
!! ATTATTAGTATTTATTATTA+AGG + chr4.2:64429075-64429094 MS.gene71326:intron 5.0%
!! TTATTAGTATTTATTATTAA+GGG + chr4.2:64429076-64429095 MS.gene71326:intron 5.0%
AACAAACCATCGGGTGCGAA+AGG + chr4.2:64434095-64434114 MS.gene71326:CDS 50.0%
ACGTCCTCTATGTCAATGCC+AGG - chr4.2:64431503-64431522 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG - chr4.2:64428687-64428706 None:intergenic 50.0%
AGCAACATCAGCAGTGACAG+CGG - chr4.2:64428816-64428835 None:intergenic 50.0%
AGCAAGGCTGTCCAGTTACT+TGG - chr4.2:64432317-64432336 None:intergenic 50.0%
AGGATCCTTGCCCTTCAAAG+AGG - chr4.2:64431880-64431899 None:intergenic 50.0%
ATACCCACGACACAGCTACA+AGG - chr4.2:64430116-64430135 None:intergenic 50.0%
CACGACACAGCTACAAGGTT+AGG - chr4.2:64430111-64430130 None:intergenic 50.0%
CCCCCAATGTAACCAATCCT+TGG + chr4.2:64429896-64429915 MS.gene71326:intron 50.0%
CCGCCAAAGAGAAGGATCAA+AGG - chr4.2:64432370-64432389 None:intergenic 50.0%
CGCACATATGCTCAGCAATG+GGG + chr4.2:64434135-64434154 MS.gene71326:CDS 50.0%
CGTGACAATACAGGGACCAA+TGG + chr4.2:64433552-64433571 MS.gene71326:intron 50.0%
CTAACCTTGTAGCTGTGTCG+TGG + chr4.2:64430109-64430128 MS.gene71326:intron 50.0%
CTAGCCTAGGGAAGATTCTG+GGG + chr4.2:64433651-64433670 MS.gene71326:CDS 50.0%
CTTGCCCTTCAAAGAGGGTT+TGG - chr4.2:64431874-64431893 None:intergenic 50.0%
GCATCAGAGCGTGACAATAC+AGG + chr4.2:64433543-64433562 MS.gene71326:intron 50.0%
GCGCACATATGCTCAGCAAT+GGG + chr4.2:64434134-64434153 MS.gene71326:CDS 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG - chr4.2:64428725-64428744 None:intergenic 50.0%
GGATCCTTGCCCTTCAAAGA+GGG - chr4.2:64431879-64431898 None:intergenic 50.0%
GGATTTGGCATGAGTCCTCT+TGG - chr4.2:64433677-64433696 None:intergenic 50.0%
GGGGGTGAGAATAGAAGAAG+AGG - chr4.2:64428669-64428688 None:intergenic 50.0%
GGTCAATGTTGAGGCGGAAA+TGG - chr4.2:64431102-64431121 None:intergenic 50.0%
GGTGTGGGTACCAACTGATT+CGG + chr4.2:64430053-64430072 MS.gene71326:intron 50.0%
TGCGCACATATGCTCAGCAA+TGG + chr4.2:64434133-64434152 MS.gene71326:CDS 50.0%
TGGTAGACATTGCGTTGTCC+TGG + chr4.2:64431482-64431501 MS.gene71326:intron 50.0%
TGTCAGACAGTGGCATGTGT+CGG + chr4.2:64429227-64429246 MS.gene71326:intron 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG + chr4.2:64430002-64430021 MS.gene71326:intron 50.0%
! AGCAGATTTGGTAGGTGGAG+AGG + chr4.2:64432885-64432904 MS.gene71326:CDS 50.0%
! CAAACCCTCTTTGAAGGGCA+AGG + chr4.2:64431872-64431891 MS.gene71326:intron 50.0%
! CTTGCAGGAGCAGATTTGGT+AGG + chr4.2:64432877-64432896 MS.gene71326:CDS 50.0%
! GCTAGCCTAGGGAAGATTCT+GGG + chr4.2:64433650-64433669 MS.gene71326:CDS 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG - chr4.2:64433698-64433717 None:intergenic 50.0%
! TGCTAGCCTAGGGAAGATTC+TGG + chr4.2:64433649-64433668 MS.gene71326:CDS 50.0%
AACGAGGGGAGAGAGGAAGA+AGG - chr4.2:64428732-64428751 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG + chr4.2:64429996-64430015 MS.gene71326:intron 55.0%
GAAGGGGTTCATCGTTCACG+CGG + chr4.2:64429666-64429685 MS.gene71326:intron 55.0%
GCTTCAAAACGAGGGGAGAG+AGG - chr4.2:64428739-64428758 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG - chr4.2:64428726-64428745 None:intergenic 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG + chr4.2:64431257-64431276 MS.gene71326:CDS 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG + chr4.2:64430001-64430020 MS.gene71326:intron 55.0%
TACACACCTTTCGCACCCGA+TGG - chr4.2:64434104-64434123 None:intergenic 55.0%
TATACGGCTGCTGCCTACCA+AGG - chr4.2:64429916-64429935 None:intergenic 55.0%
TCATCGTTCACGCGGAGACT+TGG + chr4.2:64429674-64429693 MS.gene71326:intron 55.0%
TTGGCCCCAGAATCTTCCCT+AGG - chr4.2:64433658-64433677 None:intergenic 55.0%
! GCAGGAGCAGATTTGGTAGG+TGG + chr4.2:64432880-64432899 MS.gene71326:CDS 55.0%
CAGCAATGGGGCCTTCAGTC+AGG + chr4.2:64434147-64434166 MS.gene71326:CDS 60.0%
GCCAAGAGGTGAGGGAACTC+CGG + chr4.2:64430010-64430029 MS.gene71326:intron 60.0%
GGCTGCTGCCTACCAAGGAT+TGG - chr4.2:64429911-64429930 None:intergenic 60.0%
! CGGGTGCGAAAGGTGTGTAC+TGG + chr4.2:64434105-64434124 MS.gene71326:CDS 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG + chr4.2:64433659-64433678 MS.gene71326:CDS 60.0%
GCCGGAGTTCCCTCACCTCT+TGG - chr4.2:64430014-64430033 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 64428614 64434214 64428614 ID=MS.gene71326
chr4.2 mRNA 64428614 64434214 64428614 ID=MS.gene71326.t1;Parent=MS.gene71326
chr4.2 exon 64428614 64428940 64428614 ID=MS.gene71326.t1.exon1;Parent=MS.gene71326.t1
chr4.2 CDS 64428614 64428940 64428614 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64430974 64431153 64430974 ID=MS.gene71326.t1.exon2;Parent=MS.gene71326.t1
chr4.2 CDS 64430974 64431153 64430974 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64431257 64431311 64431257 ID=MS.gene71326.t1.exon3;Parent=MS.gene71326.t1
chr4.2 CDS 64431257 64431311 64431257 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64432854 64432981 64432854 ID=MS.gene71326.t1.exon4;Parent=MS.gene71326.t1
chr4.2 CDS 64432854 64432981 64432854 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64433647 64433730 64433647 ID=MS.gene71326.t1.exon5;Parent=MS.gene71326.t1
chr4.2 CDS 64433647 64433730 64433647 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64433875 64434000 64433875 ID=MS.gene71326.t1.exon6;Parent=MS.gene71326.t1
chr4.2 CDS 64433875 64434000 64433875 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
chr4.2 exon 64434080 64434214 64434080 ID=MS.gene71326.t1.exon7;Parent=MS.gene71326.t1
chr4.2 CDS 64434080 64434214 64434080 ID=cds.MS.gene71326.t1;Parent=MS.gene71326.t1
Gene Sequence

>MS.gene71326

ATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTCGTTTTGAAGCCTACTAAGTCGGTTAATCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTAATCTTCTTCAAATTTTATTGTTTTCTTGTTTTTCTGGATGGGTTTTTGTTGATTTTTTTTTTTGGTCAAGTGGGTTATTGTTGAATTTTAATAACTACAGTTGTGGTTCTGGTTTCATGGATTATTAGTGTATTATTAGTATTTATTATTAAGGGAATTAATTGTGTTGGTGGGTATGACCATATGAAGCATAGTCGCGAACATCTGACACGATATTGACACGTCGACATAGAATTTGAACAAAATAAAAATGATATCATTGAATGTACTAATGTAAGTACACTGTCAGACAGTGGCATGTGTCGGATGTCAGTCACGTCGTCAATCAAAAGTGTGGGTGCTATAGAGATTGTACCACAATTACGAACAAAAAATTGATATTTGAATACCGATTTGTTCTACTTTTGTGAATTGGTTTTCGCCAATTTTCTAGATAATTTGTTAAAAGCGTAGAACTGAGTTATCTTATATGGTTTAATGAGATCCGGATTCAGTGACTTATCTATTAACTTTCTCTCGTAAAACACACAAAATTACACTGAAGTCACCTTGAATTACCGGCCTTAAAGTCACTGAATTCGGATCCAGTTTAAAGTAAGACAAAAGACTGAGTGTTTATGACAGTAGAAGAGTCAAAGGAAGATGTGTTGAATCTCTTTTCTCATTGCGATCGGAAGTGGAATGATTGAAATTTTTTTTAGAACCAGTGAATTTAGGAAGATGAAGGGGTTCATCGTTCACGCGGAGACTTGGAAAAATTGTTCTGAAGGATAGTTGAAGAAATTGTATGCTTGTTGTTATGATATTATTTGAAAGACTATAAAGATGTGCAATCACCAATCGATGTAAATATTTTACGGCAGGCAATTTATAACTATTGATTTGATAAAATAAGTAAAAAAAAAAAAAAGTAGTAGCAGCATTTTATAATGAACCCAAATTACGGATTATACCCCCAATGTAACCAATCCTTGGTAGGCAGCAGCCGTATACACGTAACACATACCGAAGAGAATTGAAAATCACGTGACTGTGGTTTTCACACATATTATCTAGGGTGTGTTCAGCCAAGAGGTGAGGGAACTCCGGCCACAAATTGTTCTATTACTGGTGTGGGTACCAACTGATTCGGTATTTTTAGATGGAGGACATTAACCACTTATACCTAACCTTGTAGCTGTGTCGTGGGTATTAGACTATTAGTTGATGCTACATTTTGGCAATTGTCTATTTCGTTTTTGACGTAAACATGAAATAACTGTAGTTTTACCTGAGAATTTTCACGTACAGCAATAATAGAATGATATAAGATATAGTGAGAAATTTAAGAAATAATAGAATGATATAAGATATAGTGAGAAATTGTTGGACATCCTCTTCAGTAGCTAATGACTACAAATGGATGAATGCATAACTGTATATCTTAATTTCGTGTTTTGTGCTCACTGCTCATTTGGTAAGCACAAGCTGCTCCATCTGTTGAAAAACTGAAATAGAATGATATTTTAAAATAAACTTTGCTTAACGATTAACATCTCATGTAGGGGAGAACTCCTAAAAAGTGTGATGAAGGAAAAAAAATTCACTGGTTCACGTATTTATGTTATAGGAGCTTCAGAGGATATAAATAATTTCATAAAATATACATGGTTGCATACTCATTTACTTTTATGAGTCATATTTATAGCCAGACTTTCTCTTTGGTGGAAATAAATTGTTCTAATTAACTTCATTTACCTTCCAATATCTTCTGAAATTTAGCATGAGTGAGGGTGAGAGATGCATATAAACAGTAGTTACTGTGCTGTTTGTCCTACCATTATATGCAATAATTTCGCTTGGTTGGTCTTTATATTCCAGCATATTTGATTGCCTACTTGGATAGTGATTGTGTAAATGTTATAAGATAGCCATTTGTTTCTTTCTAAGATCAAGTTGATTGTTTGGATCATTGAATTTTTCATGTTTGGAAAATGTTTATCCATTTATTTTATGAATAATTGTTGTTTTCACTTTCCATGTTTCACCAGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTGAGTCTCCTGCTCTTCGCTTGATTCTAGTATATACATGCACATCGAAAACTATACAATACATGTGCTAATTCTGAGTCTTTCATCCATCTTCTCTTAATAGGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGATTATGCTTTCGATTCTCATTTACACTTCTAGTTAATTAAAAGTGTTCTGAGCATGCTAAAAAAACATTTTCTTGTAAAGGGATGTGTATGAAAGGAAATCTATCAATTATGTAAACTGCCTTATGGATGGACATGGACATAAGATGATAGGTCTTTTCTCTCGAAGTGGTAGACATTGCGTTGTCCTGGCATTGACATAGAGGACGTTTCTTTGCCACTGCATACATATATAATCGTATCAGAATTTTAAGTGACTAGTACTCGGTAACGCTTACAAAACTTGAGCTCCATGAATCAAGTACATCTACTTTTGGTAGAGTGATGGGTCACGGAATTGAACTGCTTCGTGTGTGGATAACTATGGGTTCATTGAGTTGCCTATGGTTGTGTATTAACTATTAATCTCTCTGATATCCATTTGTGCATAACAACCGAGTTTCTTGATATTTGCGTTGATAAAAAGTTTATATCTGCAGAAAACTAGCCTACAAAAATTGAAATCGAAAATGTTCATGTCCATATATTTTTAAAATGGTTGTAATTACTAGGCTGGTTCCAAACCCTCTTTGAAGGGCAAGGATCCTCCAAACTCTTGATTTGTTATGATGTACCTACAATATCTACCTTTAATTTACTAGCTAACGGTTGATATTACCCACATTACATTCTAAAGTTAGCTGCTCACTTTTGAGGAGCAATATCCCTTTTTTTAATTATATGTATTGTCTACTTGTAATGCAATTTTTTAGCTAGTGAAGTTATTAAACTATTGTTGAATCTGTTTAGTATGCAATGATGAGATTCACGCACCTTGAATTTTGAGTAGGTTCTGACAGTTTGTTTAAAAAAATATTAGTTAGAATGAGGAGGCAAACTATTATGGAGGGTGAGGTTTATTTTGTTATCTTTTATCCCTAAGTCTATTGTGGAATTGGCATGTTATTTATGGATTTTCTATGAAACATAGCATTTTCAATGGAATTTTCAGTCCTTAAATGCCAAGTAACTGGACAGCCTTGCTGTATTTTTTTTATTTTATCATTTCCCTGTTCCTTTGATCCTTCTCTTTGGCGGATAATTTTATTTTCATTTTTTATTTCTAATTAAATATTCTTTGAATTGCTAATCTTACTTTTTATTGAAAGTCTAGTTTGAGCTTGGGAAGAGATGAGTTATGAAATTTCAAGTATTTTATGCTGATTAGATTGAACATTAAATTGGGTATTGATATTCCTCATCAAAACATGGACGATGGTTGATGGACTTAAAGTTAAACAATATAAAGTGGACGGGATAACACCTAGACATCATAGATAAGTTAATGGGTGGAATGAGTGTTCACCCCAATAACTTGTTAATTGGAATATTGGCTGGTTCTTAACAATTTTCTGATAGGAATAAGATAAGCGAAAAGCAAATTAGTATCCTACCATTTTACTTTGCACAACTGGGCCAGCCAATTGAATCGCTGCTTAATAATTCACAAACTATTTATTGTCCGTCTCTTTGGTTATTCTAATTTATAGTTCATTTTGCAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTGTTGCTCAATATCTTCTTCTAATTTGAGTTTTTATTTTCTCTTGTTGAATTTTTTATTCATTTAATAATTTGAGAAAATGATGTAGTATCAATAAAAGATTCAAAAGTTAGTAACTGGTTGAACCATTTGCAAATCATGTTCTCCTAATGTGTGTTGAGGATAAATTTTCCAAGTTGATAAATTTAGTTTCAATTAGTCTAGAGTTCTATGTTCATTCAAATCAGGTTCTTTGGATGTGTCACTAATGCATGCTTAGTCTTCGCTTGCATATCCTTCATGGCTGAAATCTGCAACTAGATTGCCACCATACTTGATGCTATGCTCAGATTCATGGTTGATTTTTCAAAGAGCTTATCAATTAATAAACATAAATGTCAATCAGTTGTTACTAGCATGCTGCAAAGTTTTCTGTTAGTATTGAAGAGTTCCGTTGATTATAGTCATCATTATTATCGTTCTCTCTATTTAATATTGTCAATACAGTTTGCTTAAGTTATTATTTTTCCTTCTTTTGGGGGATTCTGTGTAATGCAAAAGTTGATCATTCTAAACTATTTAGCATCAGAGCGTGACAATACAGGGACCAATGGGCCCATCACATTGTTTTTAGCATTTATTATTTGGATGGAACCTCAGTCAGTTGCCATTGTTGATTGTTTCAGGTTGCTAGCCTAGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTACTCAGGTGCACAATCAACTACTTTAATTGTTTCTTTTCTTTCTTAGTTCACTTTAACTGTGTGCGCGCACACATGTACACATAGAGAGAACCTTTTCTTTTTATCAAAATGTACATAAACTAACCATGATTGCATAATTCTTTTTACAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAGTATGTTTTACCCCAAATTGAATTTTCTATCTGCAATTCACTCATTGATAAAGTATTAACCCATTGTTCTAATTTGCAGAAATCAGTAGAGGCAAACAAACCATCGGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>MS.gene71326.t1

MASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANITQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE