Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92939.t1 | XP_003614127.2 | 87.4 | 596 | 21 | 2 | 1 | 542 | 69 | 664 | 1.60E-298 | 1034.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92939.t1 | Q5UNY4 | 29.8 | 533 | 293 | 14 | 7 | 517 | 16 | 489 | 1.9e-58 | 228.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92939.t1 | G7JY31 | 87.4 | 596 | 21 | 2 | 1 | 542 | 69 | 664 | 1.1e-298 | 1034.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene92939 | -0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene92939 | -0.813979 | 1.95E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene92939 | -0.800823 | 1.20E-48 | -1.69E-46 |
| MS.gene049281 | MS.gene92939 | 0.830074 | 3.60E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene92939 | -0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene92939 | -0.843032 | 1.80E-58 | -1.69E-46 |
| MS.gene049483 | MS.gene92939 | 0.826713 | 2.33E-54 | -1.69E-46 |
| MS.gene049611 | MS.gene92939 | 0.82216 | 2.75E-53 | -1.69E-46 |
| MS.gene050095 | MS.gene92939 | 0.806453 | 8.17E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene92939 | -0.84389 | 1.06E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene92939 | -0.814967 | 1.18E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene92939 | -0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene92939 | -0.835826 | 1.34E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene92939 | -0.803015 | 4.26E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene92939 | 0.813937 | 1.99E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene92939 | 0.817496 | 3.20E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene92939 | 0.885594 | 7.11E-72 | -1.69E-46 |
| MS.gene050496 | MS.gene92939 | -0.808756 | 2.65E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene92939 | -0.855971 | 4.41E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene92939 | -0.851548 | 8.26E-61 | -1.69E-46 |
| MS.gene050647 | MS.gene92939 | 0.812771 | 3.59E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene92939 | -0.810377 | 1.19E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene92939 | -0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene92939 | -0.830056 | 3.64E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene92939 | -0.829914 | 3.94E-55 | -1.69E-46 |
| MS.gene050883 | MS.gene92939 | 0.854356 | 1.30E-61 | -1.69E-46 |
| MS.gene050986 | MS.gene92939 | -0.818108 | 2.33E-52 | -1.69E-46 |
| MS.gene051044 | MS.gene92939 | 0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene92939 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene92939 | 0.874975 | 4.44E-68 | -1.69E-46 |
| MS.gene051138 | MS.gene92939 | 0.843811 | 1.11E-58 | -1.69E-46 |
| MS.gene051364 | MS.gene92939 | 0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene92939 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene05141 | MS.gene92939 | 0.83246 | 9.34E-56 | -1.69E-46 |
| MS.gene051564 | MS.gene92939 | -0.812576 | 3.95E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene92939 | 0.855563 | 5.80E-62 | -1.69E-46 |
| MS.gene052164 | MS.gene92939 | -0.819086 | 1.40E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene92939 | -0.80278 | 4.77E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene92939 | -0.812552 | 4.00E-51 | -1.69E-46 |
| MS.gene052916 | MS.gene92939 | -0.800493 | 1.40E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene92939 | -0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene053069 | MS.gene92939 | 0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene92939 | -0.809752 | 1.62E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene92939 | -0.806848 | 6.74E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene92939 | -0.808295 | 3.32E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene92939 | 0.880649 | 4.61E-70 | -1.69E-46 |
| MS.gene053488 | MS.gene92939 | 0.818292 | 2.12E-52 | -1.69E-46 |
| MS.gene053549 | MS.gene92939 | 0.83608 | 1.15E-56 | -1.69E-46 |
| MS.gene053561 | MS.gene92939 | 0.867429 | 1.38E-65 | -1.69E-46 |
| MS.gene053887 | MS.gene92939 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene054054 | MS.gene92939 | 0.819503 | 1.12E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene92939 | -0.820181 | 7.85E-53 | -1.69E-46 |
| MS.gene054616 | MS.gene92939 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene92939 | -0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene92939 | 0.846208 | 2.51E-59 | -1.69E-46 |
| MS.gene054707 | MS.gene92939 | 0.891196 | 4.96E-74 | -1.69E-46 |
| MS.gene054708 | MS.gene92939 | 0.992962 | 1.48E-196 | -1.69E-46 |
| MS.gene05470 | MS.gene92939 | -0.809691 | 1.67E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene92939 | -0.8147 | 1.35E-51 | -1.69E-46 |
| MS.gene054959 | MS.gene92939 | 0.824471 | 7.93E-54 | -1.69E-46 |
| MS.gene055111 | MS.gene92939 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene055124 | MS.gene92939 | 0.863396 | 2.57E-64 | -1.69E-46 |
| MS.gene055139 | MS.gene92939 | 0.825522 | 4.48E-54 | -1.69E-46 |
| MS.gene055154 | MS.gene92939 | 0.868154 | 8.06E-66 | -1.69E-46 |
| MS.gene055202 | MS.gene92939 | 0.864909 | 8.66E-65 | -1.69E-46 |
| MS.gene055362 | MS.gene92939 | -0.843092 | 1.73E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene92939 | -0.833957 | 3.96E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene92939 | -0.819667 | 1.03E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene92939 | -0.820643 | 6.15E-53 | -1.69E-46 |
| MS.gene056310 | MS.gene92939 | 0.816861 | 4.44E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene92939 | 0.835231 | 1.89E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene92939 | 0.848832 | 4.77E-60 | -1.69E-46 |
| MS.gene056504 | MS.gene92939 | -0.843282 | 1.54E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene92939 | -0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene92939 | 0.811485 | 6.84E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene92939 | -0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene92939 | 0.853117 | 2.95E-61 | -1.69E-46 |
| MS.gene058068 | MS.gene92939 | 0.808562 | 2.91E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene92939 | 0.806514 | 7.93E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene92939 | 0.834373 | 3.11E-56 | -1.69E-46 |
| MS.gene058109 | MS.gene92939 | 0.832336 | 1.00E-55 | -1.69E-46 |
| MS.gene058111 | MS.gene92939 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene058117 | MS.gene92939 | 0.833676 | 4.65E-56 | -1.69E-46 |
| MS.gene058157 | MS.gene92939 | -0.825329 | 4.97E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene92939 | 0.840764 | 7.14E-58 | -1.69E-46 |
| MS.gene058173 | MS.gene92939 | 0.827217 | 1.77E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene92939 | 0.838977 | 2.09E-57 | -1.69E-46 |
| MS.gene058268 | MS.gene92939 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene058269 | MS.gene92939 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene92939 | -0.837155 | 6.14E-57 | -1.69E-46 |
| MS.gene058419 | MS.gene92939 | -0.81785 | 2.66E-52 | -1.69E-46 |
| MS.gene058493 | MS.gene92939 | 0.816321 | 5.87E-52 | -1.69E-46 |
| MS.gene058494 | MS.gene92939 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene92939 | -0.805475 | 1.31E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene92939 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene058691 | MS.gene92939 | 0.810194 | 1.30E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene92939 | -0.826497 | 2.63E-54 | -1.69E-46 |
| MS.gene058840 | MS.gene92939 | 0.83103 | 2.10E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene92939 | -0.855707 | 5.26E-62 | -1.69E-46 |
| MS.gene059037 | MS.gene92939 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene92939 | 0.837345 | 5.49E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene92939 | -0.816988 | 4.16E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene92939 | -0.824401 | 8.24E-54 | -1.69E-46 |
| MS.gene059697 | MS.gene92939 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene92939 | -0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene92939 | -0.839654 | 1.39E-57 | -1.69E-46 |
| MS.gene059916 | MS.gene92939 | 0.837869 | 4.03E-57 | -1.69E-46 |
| MS.gene059944 | MS.gene92939 | 0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene92939 | -0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene92939 | 0.831639 | 1.49E-55 | -1.69E-46 |
| MS.gene060602 | MS.gene92939 | 0.813876 | 2.05E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene92939 | 0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene92939 | -0.818503 | 1.89E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene92939 | -0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene92939 | -0.849369 | 3.38E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene92939 | -0.810064 | 1.39E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92939.t1 | MTR_5g045160 | 87.416 | 596 | 21 | 2 | 1 | 542 | 69 | 664 | 0.0 | 1053 |
| MS.gene92939.t1 | MTR_6g445440 | 83.072 | 573 | 66 | 3 | 1 | 542 | 64 | 636 | 0.0 | 965 |
| MS.gene92939.t1 | MTR_5g045130 | 89.977 | 439 | 43 | 1 | 105 | 542 | 61 | 499 | 0.0 | 816 |
| MS.gene92939.t1 | MTR_3g103410 | 87.411 | 421 | 41 | 2 | 134 | 542 | 287 | 707 | 0.0 | 751 |
| MS.gene92939.t1 | MTR_3g103410 | 84.762 | 105 | 16 | 0 | 1 | 105 | 50 | 154 | 1.10e-56 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92939.t1 | AT5G13210 | 59.869 | 613 | 174 | 6 | 2 | 542 | 61 | 673 | 0.0 | 746 |
| MS.gene92939.t1 | AT5G43400 | 61.037 | 598 | 175 | 6 | 2 | 542 | 59 | 655 | 0.0 | 742 |
| MS.gene92939.t1 | AT5G43390 | 60.067 | 596 | 182 | 9 | 2 | 542 | 49 | 643 | 0.0 | 714 |
| MS.gene92939.t1 | AT3G24780 | 58.603 | 587 | 162 | 7 | 2 | 507 | 117 | 703 | 0.0 | 693 |
Find 168 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATGAAGAAACTTGAAAT+TGG | 0.206773 | 5.1:+33640880 | None:intergenic |
| GCCTTCTTTGTTGGACTTGC+CGG | 0.260625 | 5.1:+33641339 | None:intergenic |
| GAATCTGCTGACATTGTTCT+TGG | 0.284328 | 5.1:-33639817 | MS.gene92939:CDS |
| AAATCAGTCTTGCTGCTAAA+TGG | 0.287484 | 5.1:-33640787 | MS.gene92939:CDS |
| GCTTCTATGCTGCCGCTCTA+TGG | 0.294484 | 5.1:-33641318 | MS.gene92939:CDS |
| CTTCTCCTTATAAAACTTCA+TGG | 0.297463 | 5.1:+33640526 | None:intergenic |
| CTTGCTGTGTGTGATGTGTC+TGG | 0.301225 | 5.1:-33640308 | MS.gene92939:CDS |
| ATATGCGATCAAACACCTTC+TGG | 0.312936 | 5.1:+33640093 | None:intergenic |
| GAGTTGCCTGAGGTGTTTAT+TGG | 0.349776 | 5.1:-33640596 | MS.gene92939:CDS |
| GGGGTTTGATTCCTTACAAT+AGG | 0.355708 | 5.1:-33640562 | MS.gene92939:CDS |
| ATCAAGCGTCTGCAAACTCT+TGG | 0.365158 | 5.1:-33639992 | MS.gene92939:CDS |
| AGGAGGCGCATTATGCTTAT+AGG | 0.369882 | 5.1:-33640670 | MS.gene92939:CDS |
| TGTTTATTGGTGCTAATCAA+TGG | 0.374653 | 5.1:-33640583 | MS.gene92939:CDS |
| GCAGCTTCCATGGCTTCTAC+AGG | 0.387857 | 5.1:+33639774 | None:intergenic |
| CCTAGTGATTGCTTGGTAAT+CGG | 0.388642 | 5.1:+33639965 | None:intergenic |
| GGAGAGGTTTGAGAAGTACT+TGG | 0.389397 | 5.1:-33640486 | MS.gene92939:CDS |
| AGAAGACGATAGAGGATCTC+AGG | 0.394537 | 5.1:+33641220 | None:intergenic |
| GCCATGGAAGCTGCCATCGC+TGG | 0.399741 | 5.1:-33639765 | MS.gene92939:CDS |
| GTGTGTAGCATTGGGGTTGT+TGG | 0.401844 | 5.1:-33640258 | MS.gene92939:CDS |
| GTTTGTGAGGAACATGGATT+GGG | 0.401906 | 5.1:-33640132 | MS.gene92939:CDS |
| AGCATAGAAGCCTTCTTTGT+TGG | 0.404217 | 5.1:+33641330 | None:intergenic |
| GGGTTTGATTCCTTACAATA+GGG | 0.405295 | 5.1:-33640561 | MS.gene92939:CDS |
| GAAGGTGTTTGATCGCATAT+TGG | 0.405938 | 5.1:-33640090 | MS.gene92939:CDS |
| GGAAACTGCTCATGCTTTGA+AGG | 0.409132 | 5.1:-33640957 | MS.gene92939:CDS |
| GGAGGCGCATTATGCTTATA+GGG | 0.411872 | 5.1:-33640669 | MS.gene92939:CDS |
| GTTTATTGGTGCTAATCAAT+GGG | 0.412509 | 5.1:-33640582 | MS.gene92939:CDS |
| CTTTCTGAGTGGATGGCACC+GGG | 0.421088 | 5.1:+33639868 | None:intergenic |
| CTCCGTGGTGTTCGTGGTAC+CGG | 0.428319 | 5.1:-33641358 | MS.gene92939:CDS |
| CACAACTAGTTTCTGATACT+CGG | 0.428515 | 5.1:+33639740 | None:intergenic |
| TATACTTCCTAGTGATTGCT+TGG | 0.431774 | 5.1:+33639958 | None:intergenic |
| AGTTTGTGAGGAACATGGAT+TGG | 0.432352 | 5.1:-33640133 | MS.gene92939:CDS |
| ATGGAGGTGTGTGTAGCATT+GGG | 0.432777 | 5.1:-33640266 | MS.gene92939:CDS |
| TTACAATAGGGTTGCTTCTG+TGG | 0.434673 | 5.1:-33640549 | MS.gene92939:CDS |
| CCGTTGACTCTTCCTTTGAT+CGG | 0.435307 | 5.1:-33640757 | MS.gene92939:CDS |
| TCATGAAGAAACTTGAAATT+GGG | 0.436482 | 5.1:+33640881 | None:intergenic |
| ACTAGGAAGTATAGAAAGAA+AGG | 0.441720 | 5.1:-33639948 | MS.gene92939:CDS |
| GCCAGCGATGGCAGCTTCCA+TGG | 0.443302 | 5.1:+33639764 | None:intergenic |
| GTTCCTCACAAACTTTGTCT+TGG | 0.445968 | 5.1:+33640142 | None:intergenic |
| GTGAAGGAACATTGGTAGCT+AGG | 0.448466 | 5.1:+33641272 | None:intergenic |
| ACAACTAGTTTCTGATACTC+GGG | 0.457651 | 5.1:+33639741 | None:intergenic |
| TGTAACCTCCGTGGTGTTCG+TGG | 0.460467 | 5.1:-33641364 | MS.gene92939:CDS |
| GTTCCTTCACTCGCTAACTT+TGG | 0.462173 | 5.1:-33641259 | MS.gene92939:CDS |
| CGTTGATGATTTGCTCAAGA+AGG | 0.468757 | 5.1:-33640348 | MS.gene92939:CDS |
| CCTTTCTGAGTGGATGGCAC+CGG | 0.470831 | 5.1:+33639867 | None:intergenic |
| TATGGAGGTGTGTGTAGCAT+TGG | 0.471438 | 5.1:-33640267 | MS.gene92939:CDS |
| ATAGGGTTCGTGATCGTTTG+AGG | 0.471872 | 5.1:-33640652 | MS.gene92939:CDS |
| AGAGGTGGCAACGAGAGTTA+AGG | 0.479298 | 5.1:-33640987 | MS.gene92939:CDS |
| GCCACTCCTTTCTGAGTGGA+TGG | 0.483109 | 5.1:+33639861 | None:intergenic |
| TTGCTGTGTGTGATGTGTCT+GGG | 0.483780 | 5.1:-33640307 | MS.gene92939:CDS |
| GCCTCAGCTTCATGTGATTG+AGG | 0.484160 | 5.1:-33640180 | MS.gene92939:CDS |
| AGGAGGATCAGATGATTAAG+AGG | 0.485373 | 5.1:-33640043 | MS.gene92939:CDS |
| AAGTATAGAAAGAAAGGGTA+TGG | 0.487906 | 5.1:-33639942 | MS.gene92939:CDS |
| TACTTGGAGGATGTGAAGGC+AGG | 0.488941 | 5.1:-33640470 | MS.gene92939:CDS |
| AGTGTCTCAGAAGGAGTATC+AGG | 0.489014 | 5.1:+33641445 | None:intergenic |
| GTAATAACCTTCCCTTTCCA+TGG | 0.491644 | 5.1:+33640215 | None:intergenic |
| GTATCAGAAACTAGTTGTGC+TGG | 0.495109 | 5.1:-33639736 | MS.gene92939:CDS |
| AATGCTACACACACCTCCAT+AGG | 0.501130 | 5.1:+33640269 | None:intergenic |
| GAGTATGCATGGGACCCCTA+TGG | 0.506823 | 5.1:-33640285 | MS.gene92939:CDS |
| GGAAGGTTATTACTTTCAGC+AGG | 0.508350 | 5.1:-33640205 | MS.gene92939:CDS |
| ACAGAAGCAACCCTATTGTA+AGG | 0.510787 | 5.1:+33640551 | None:intergenic |
| GGAATATGAAGGTGTGGAGG+AGG | 0.511393 | 5.1:-33640687 | MS.gene92939:CDS |
| CCTCAGCTTCATGTGATTGA+GGG | 0.511737 | 5.1:-33640179 | MS.gene92939:CDS |
| CTGATACTCGGGGCCAGCGA+TGG | 0.513732 | 5.1:+33639752 | None:intergenic |
| CACTCAGAAAGGAGTGGCAC+TGG | 0.513905 | 5.1:-33639856 | MS.gene92939:CDS |
| TCAAGCGTCTGCAAACTCTT+GGG | 0.514244 | 5.1:-33639991 | MS.gene92939:CDS |
| TGCCAAGAGGATCTTCCCTC+GGG | 0.516133 | 5.1:-33640711 | MS.gene92939:CDS |
| ATTATAGAGTCTTTGCGTGA+TGG | 0.519156 | 5.1:-33640407 | MS.gene92939:CDS |
| CTCCCGAGGGAAGATCCTCT+TGG | 0.520806 | 5.1:+33640709 | None:intergenic |
| CAGCTTCCATGGCTTCTACA+GGG | 0.521562 | 5.1:+33639775 | None:intergenic |
| GAGGTTTGAGAAGTACTTGG+AGG | 0.521875 | 5.1:-33640483 | MS.gene92939:CDS |
| TGAAGGAACATTGGTAGCTA+GGG | 0.522147 | 5.1:+33641273 | None:intergenic |
| ATATTGGATGTGGCTGTCAA+TGG | 0.529469 | 5.1:-33640074 | MS.gene92939:CDS |
| TCACCAACGTTTCTCTCCAC+TGG | 0.531788 | 5.1:-33641502 | MS.gene92939:CDS |
| GGAGGTTACAGACGAGTTTG+AGG | 0.532302 | 5.1:+33641377 | None:intergenic |
| ATGCTACACACACCTCCATA+GGG | 0.534414 | 5.1:+33640270 | None:intergenic |
| GTTGATGATTTGCTCAAGAA+GGG | 0.536020 | 5.1:-33640347 | MS.gene92939:CDS |
| GAGGTTACAGACGAGTTTGA+GGG | 0.536086 | 5.1:+33641378 | None:intergenic |
| GATGTGTCTGGGAGTATGCA+TGG | 0.541073 | 5.1:-33640296 | MS.gene92939:CDS |
| ACCGGCAAGTCCAACAAAGA+AGG | 0.544742 | 5.1:-33641340 | MS.gene92939:CDS |
| TCGAGAGGCTCAAACTAGCT+TGG | 0.545154 | 5.1:-33641420 | MS.gene92939:CDS |
| AAAGGAGTGGCACTGGTAAG+TGG | 0.549583 | 5.1:-33639849 | MS.gene92939:CDS |
| GACAAAGTTTGTGAGGAACA+TGG | 0.551414 | 5.1:-33640138 | MS.gene92939:CDS |
| TTGCCAAGAGGATCTTCCCT+CGG | 0.551799 | 5.1:-33640712 | MS.gene92939:CDS |
| AACCTTCGAGAAGACGATAG+AGG | 0.553075 | 5.1:+33641212 | None:intergenic |
| CAAGGATAACAAAGGGTGGA+AGG | 0.554421 | 5.1:-33641038 | MS.gene92939:intron |
| TGAACGAGGAACCATGGAAA+GGG | 0.554458 | 5.1:-33640226 | MS.gene92939:CDS |
| TATTGGATGTGGCTGTCAAT+GGG | 0.560043 | 5.1:-33640073 | MS.gene92939:CDS |
| ATGCTTTGAAGGAAGAGAAG+AGG | 0.561707 | 5.1:-33640946 | MS.gene92939:CDS |
| CCGATTACCAAGCAATCACT+AGG | 0.565104 | 5.1:-33639965 | MS.gene92939:CDS |
| GGAAGAGAAGAGGATTGCCT+TGG | 0.568272 | 5.1:-33640936 | MS.gene92939:CDS |
| CCCTCAATCACATGAAGCTG+AGG | 0.568852 | 5.1:+33640179 | None:intergenic |
| TAGCCAAAGTTAGCGAGTGA+AGG | 0.568875 | 5.1:+33641256 | None:intergenic |
| ATCCTCTATCGTCTTCTCGA+AGG | 0.571604 | 5.1:-33641214 | MS.gene92939:intron |
| CCGGTGCCATCCACTCAGAA+AGG | 0.571959 | 5.1:-33639867 | MS.gene92939:CDS |
| GTTTGATCGCATATTGGATG+TGG | 0.574432 | 5.1:-33640084 | MS.gene92939:CDS |
| CTAGGAAGTATAGAAAGAAA+GGG | 0.575902 | 5.1:-33639947 | MS.gene92939:CDS |
| AACGAGAGTTAAGGCTCAGA+AGG | 0.578204 | 5.1:-33640978 | MS.gene92939:CDS |
| GGGAAGACTACTATTGCTGC+TGG | 0.579975 | 5.1:-33640449 | MS.gene92939:CDS |
| CAGTGCCACTCCTTTCTGAG+TGG | 0.580391 | 5.1:+33639857 | None:intergenic |
| GAGAGACTCGAAGGCCACCC+CGG | 0.584902 | 5.1:-33639886 | MS.gene92939:CDS |
| AGGGAAGATCCTCTTGGCAA+TGG | 0.584939 | 5.1:+33640715 | None:intergenic |
| GAAGACGATAGAGGATCTCA+GGG | 0.585178 | 5.1:+33641221 | None:intergenic |
| TTGGAATCTGAGAGACTCGA+AGG | 0.585593 | 5.1:-33639895 | MS.gene92939:CDS |
| GATCTTTGTCTTTAGTGACA+TGG | 0.587705 | 5.1:-33640021 | MS.gene92939:CDS |
| TTGAACGAGGAACCATGGAA+AGG | 0.588133 | 5.1:-33640227 | MS.gene92939:CDS |
| AGACTCCATCGTGACTAAAG+AGG | 0.589624 | 5.1:-33641005 | MS.gene92939:CDS |
| TTCCCTCGGGAGGAATATGA+AGG | 0.591428 | 5.1:-33640698 | MS.gene92939:CDS |
| TATAAGCCCTGTAGAAGCCA+TGG | 0.596604 | 5.1:-33639781 | MS.gene92939:CDS |
| TCAAAGGAAGAGTCAACGGA+AGG | 0.598171 | 5.1:+33640761 | None:intergenic |
| CTCAGCTTCATGTGATTGAG+GGG | 0.599232 | 5.1:-33640178 | MS.gene92939:CDS |
| ACATTGTTCTTGGATAATGA+AGG | 0.599605 | 5.1:-33639807 | MS.gene92939:CDS |
| TTTATTGGTGCTAATCAATG+GGG | 0.599749 | 5.1:-33640581 | MS.gene92939:CDS |
| TTTGTGAGGAACATGGATTG+GGG | 0.600633 | 5.1:-33640131 | MS.gene92939:CDS |
| CTGAATTGAACGAGGAACCA+TGG | 0.603342 | 5.1:-33640232 | MS.gene92939:CDS |
| GAAGTACTTGGAGGATGTGA+AGG | 0.604063 | 5.1:-33640474 | MS.gene92939:CDS |
| ACTTGGAGGATGTGAAGGCA+GGG | 0.604217 | 5.1:-33640469 | MS.gene92939:CDS |
| TGTGTTGGTGCCGTTGAGGA+AGG | 0.604572 | 5.1:-33640624 | MS.gene92939:CDS |
| GTGAAGTGGCTGAGTTGCAG+TGG | 0.607162 | 5.1:-33640379 | MS.gene92939:CDS |
| CCGATCAAAGGAAGAGTCAA+CGG | 0.608539 | 5.1:+33640757 | None:intergenic |
| GGTGCCGTTGAGGAAGGTGT+TGG | 0.609929 | 5.1:-33640618 | MS.gene92939:CDS |
| GAGTCTTTGCGTGATGGAGA+TGG | 0.610505 | 5.1:-33640401 | MS.gene92939:CDS |
| CTCTCGACGAGTGTCTCAGA+AGG | 0.610855 | 5.1:+33641436 | None:intergenic |
| CACCTTCATATTCCTCCCGA+GGG | 0.610961 | 5.1:+33640696 | None:intergenic |
| GTTAGCGAGTGAAGGAACAT+TGG | 0.613012 | 5.1:+33641264 | None:intergenic |
| ATGTGTCTGGGAGTATGCAT+GGG | 0.615466 | 5.1:-33640295 | MS.gene92939:CDS |
| CTGAGTGGATGGCACCGGGG+TGG | 0.616153 | 5.1:+33639872 | None:intergenic |
| TAACAGCGTTGACCGATCAA+AGG | 0.617986 | 5.1:+33640745 | None:intergenic |
| TGCTCAAGAAGGGAAAGATG+AGG | 0.619614 | 5.1:-33640337 | MS.gene92939:CDS |
| GGCTGTCAATGGGAATCTCA+AGG | 0.621591 | 5.1:-33640063 | MS.gene92939:CDS |
| TGCCACCTCTTTAGTCACGA+TGG | 0.625845 | 5.1:+33641000 | None:intergenic |
| ACACCTTCATATTCCTCCCG+AGG | 0.626089 | 5.1:+33640695 | None:intergenic |
| TTAGCACCAATAAACACCTC+AGG | 0.626398 | 5.1:+33640590 | None:intergenic |
| AAGGATAACAAAGGGTGGAA+GGG | 0.628322 | 5.1:-33641037 | MS.gene92939:intron |
| AACTCCAACACCTTCCTCAA+CGG | 0.630137 | 5.1:+33640614 | None:intergenic |
| TTGTGAGGAACATGGATTGG+GGG | 0.639683 | 5.1:-33640130 | MS.gene92939:CDS |
| CAAGAGGATCTTCCCTCGGG+AGG | 0.641432 | 5.1:-33640708 | MS.gene92939:CDS |
| AGTCCAAGACAAAGTTTGTG+AGG | 0.642724 | 5.1:-33640145 | MS.gene92939:CDS |
| TCGGGAGGAATATGAAGGTG+TGG | 0.645333 | 5.1:-33640693 | MS.gene92939:CDS |
| GGAAGAAGAAATCGAGACAA+GGG | 0.645821 | 5.1:+33641476 | None:intergenic |
| TGGAGGTGTGTGTAGCATTG+GGG | 0.646940 | 5.1:-33640265 | MS.gene92939:CDS |
| AAGGAGTATCAGGAACAACA+TGG | 0.647046 | 5.1:+33641455 | None:intergenic |
| TCGTTTGAGGAAAGATGTGT+TGG | 0.647723 | 5.1:-33640639 | MS.gene92939:CDS |
| GAAGGTGTTGGAGTTGCCTG+AGG | 0.648237 | 5.1:-33640606 | MS.gene92939:CDS |
| CTTCTGAGACACTCGTCGAG+AGG | 0.650304 | 5.1:-33641435 | MS.gene92939:CDS |
| AAGATGTGTTGGTGCCGTTG+AGG | 0.652976 | 5.1:-33640628 | MS.gene92939:CDS |
| CAAAGGAAGAGTCAACGGAA+GGG | 0.653236 | 5.1:+33640762 | None:intergenic |
| CTCCATCGTGACTAAAGAGG+TGG | 0.653770 | 5.1:-33641002 | MS.gene92939:CDS |
| CGAGGAACCATGGAAAGGGA+AGG | 0.654288 | 5.1:-33640222 | MS.gene92939:CDS |
| TATGCATGGGACCCCTATGG+AGG | 0.657200 | 5.1:-33640282 | MS.gene92939:CDS |
| TGGAAGAAGAAATCGAGACA+AGG | 0.663800 | 5.1:+33641475 | None:intergenic |
| GCGTGATGGAGATGGTGAAG+TGG | 0.668727 | 5.1:-33640393 | MS.gene92939:CDS |
| GATGAACACTGATTTCCAGA+AGG | 0.669878 | 5.1:-33640108 | MS.gene92939:CDS |
| AAAGACTCTATAATCTCGTG+AGG | 0.670125 | 5.1:+33640416 | None:intergenic |
| ATCGAGACAAGGGTTACCAG+TGG | 0.673142 | 5.1:+33641486 | None:intergenic |
| TCAGCTTCATGTGATTGAGG+GGG | 0.673206 | 5.1:-33640177 | MS.gene92939:CDS |
| GTTACAGACGAGTTTGAGGG+CGG | 0.674635 | 5.1:+33641381 | None:intergenic |
| GCCATCCACTCAGAAAGGAG+TGG | 0.675952 | 5.1:-33639862 | MS.gene92939:CDS |
| GGAGGAATATGAAGGTGTGG+AGG | 0.684289 | 5.1:-33640690 | MS.gene92939:CDS |
| TGCTACACACACCTCCATAG+GGG | 0.689495 | 5.1:+33640271 | None:intergenic |
| TTACCAGTGGAGAGAAACGT+TGG | 0.690822 | 5.1:+33641499 | None:intergenic |
| TTTCTGAGTGGATGGCACCG+GGG | 0.698885 | 5.1:+33639869 | None:intergenic |
| CAACTAGTTTCTGATACTCG+GGG | 0.701259 | 5.1:+33639742 | None:intergenic |
| TGCCGGTACCACGAACACCA+CGG | 0.707609 | 5.1:+33641356 | None:intergenic |
| TATGTGAGACCATTGCCAAG+AGG | 0.711412 | 5.1:-33640724 | MS.gene92939:CDS |
| AAACTCGTCTGTAACCTCCG+TGG | 0.731806 | 5.1:-33641373 | MS.gene92939:CDS |
| GTTGGTGTCTGAATTGAACG+AGG | 0.758083 | 5.1:-33640240 | MS.gene92939:CDS |
| TGTCAATGGGAATCTCAAGG+AGG | 0.758838 | 5.1:-33640060 | MS.gene92939:CDS |
| CGGTACCACGAACACCACGG+AGG | 0.805564 | 5.1:+33641359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATGAAGAAACTTGAAAT+TGG | + | chr5.1:33640359-33640378 | None:intergenic | 25.0% |
| ! | TCATGAAGAAACTTGAAATT+GGG | + | chr5.1:33640358-33640377 | None:intergenic | 25.0% |
| ! | TTATTCCTCTCCTTAAAAAA+GGG | + | chr5.1:33640129-33640148 | None:intergenic | 25.0% |
| ! | TTTATTCCTCTCCTTAAAAA+AGG | + | chr5.1:33640130-33640149 | None:intergenic | 25.0% |
| AAGTATAGAAAGAAAGGGTA+TGG | - | chr5.1:33641294-33641313 | MS.gene92939:CDS | 30.0% | |
| ACATTGTTCTTGGATAATGA+AGG | - | chr5.1:33641429-33641448 | MS.gene92939:CDS | 30.0% | |
| AGATTCCAAAAAACTATCTG+AGG | + | chr5.1:33641330-33641349 | None:intergenic | 30.0% | |
| CTTCTCCTTATAAAACTTCA+TGG | + | chr5.1:33640713-33640732 | None:intergenic | 30.0% | |
| TATTCCTCTCCTTAAAAAAG+GGG | + | chr5.1:33640128-33640147 | None:intergenic | 30.0% | |
| ! | ACTAGGAAGTATAGAAAGAA+AGG | - | chr5.1:33641288-33641307 | MS.gene92939:CDS | 30.0% |
| ! | ATTTTCATGAAACCATAGAG+CGG | + | chr5.1:33639933-33639952 | None:intergenic | 30.0% |
| ! | CTAGGAAGTATAGAAAGAAA+GGG | - | chr5.1:33641289-33641308 | MS.gene92939:CDS | 30.0% |
| ! | TGAAGATGAAGATTTCCTTT+TGG | + | chr5.1:33640101-33640120 | None:intergenic | 30.0% |
| !! | GTTTATTGGTGCTAATCAAT+GGG | - | chr5.1:33640654-33640673 | MS.gene92939:CDS | 30.0% |
| !! | TGTTTATTGGTGCTAATCAA+TGG | - | chr5.1:33640653-33640672 | MS.gene92939:CDS | 30.0% |
| !! | TTTATTGGTGCTAATCAATG+GGG | - | chr5.1:33640655-33640674 | MS.gene92939:CDS | 30.0% |
| !! | TTTTGCTGATTGTTTGAAGA+AGG | - | chr5.1:33640393-33640412 | MS.gene92939:CDS | 30.0% |
| !!! | ATCTCGAGTTTTTGAAATCT+GGG | - | chr5.1:33640416-33640435 | MS.gene92939:CDS | 30.0% |
| !!! | GAAGTTTTTGAAGCATGATA+AGG | - | chr5.1:33640729-33640748 | MS.gene92939:CDS | 30.0% |
| AAAGACTCTATAATCTCGTG+AGG | + | chr5.1:33640823-33640842 | None:intergenic | 35.0% | |
| AAAGGAAATCTGGATCCAAA+AGG | - | chr5.1:33640083-33640102 | MS.gene92939:CDS | 35.0% | |
| AAATCAGTCTTGCTGCTAAA+TGG | - | chr5.1:33640449-33640468 | MS.gene92939:CDS | 35.0% | |
| ATTATAGAGTCTTTGCGTGA+TGG | - | chr5.1:33640829-33640848 | MS.gene92939:CDS | 35.0% | |
| CAACAAGAACTACAACAACA+AGG | - | chr5.1:33640171-33640190 | MS.gene92939:CDS | 35.0% | |
| GATCTTTGTCTTTAGTGACA+TGG | - | chr5.1:33641215-33641234 | MS.gene92939:CDS | 35.0% | |
| GGGTTTGATTCCTTACAATA+GGG | - | chr5.1:33640675-33640694 | MS.gene92939:CDS | 35.0% | |
| TATACTTCCTAGTGATTGCT+TGG | + | chr5.1:33641281-33641300 | None:intergenic | 35.0% | |
| TGTTGTTGTAGTTCTTGTTG+TGG | + | chr5.1:33640171-33640190 | None:intergenic | 35.0% | |
| ! | ACAACTAGTTTCTGATACTC+GGG | + | chr5.1:33641498-33641517 | None:intergenic | 35.0% |
| ! | CACAACTAGTTTCTGATACT+CGG | + | chr5.1:33641499-33641518 | None:intergenic | 35.0% |
| !! | ATCAACAAGCTTTTTAGCCA+AGG | + | chr5.1:33640320-33640339 | None:intergenic | 35.0% |
| !! | GTTGATGATTTGCTCAAGAA+GGG | - | chr5.1:33640889-33640908 | MS.gene92939:CDS | 35.0% |
| !! | TGTGGCCATGAAGTTTTATA+AGG | - | chr5.1:33640705-33640724 | MS.gene92939:CDS | 35.0% |
| !!! | CTTCATCAACCCCTTTTTTA+AGG | - | chr5.1:33640116-33640135 | MS.gene92939:CDS | 35.0% |
| !!! | GATCTCGAGTTTTTGAAATC+TGG | - | chr5.1:33640415-33640434 | MS.gene92939:CDS | 35.0% |
| !!! | TTTTGAAGCATGATAAGGAG+AGG | - | chr5.1:33640734-33640753 | MS.gene92939:CDS | 35.0% |
| AAGGACGTCAAGGATAACAA+AGG | - | chr5.1:33640190-33640209 | MS.gene92939:CDS | 40.0% | |
| AAGGATAACAAAGGGTGGAA+GGG | - | chr5.1:33640199-33640218 | MS.gene92939:CDS | 40.0% | |
| ACAGAAGCAACCCTATTGTA+AGG | + | chr5.1:33640688-33640707 | None:intergenic | 40.0% | |
| AGAAAGAAGAGTGGATGGAA+AGG | - | chr5.1:33640065-33640084 | MS.gene92939:CDS | 40.0% | |
| AGCATAGAAGCCTTCTTTGT+TGG | + | chr5.1:33639909-33639928 | None:intergenic | 40.0% | |
| AGGACGTCAAGGATAACAAA+GGG | - | chr5.1:33640191-33640210 | MS.gene92939:CDS | 40.0% | |
| AGGAGGATCAGATGATTAAG+AGG | - | chr5.1:33641193-33641212 | MS.gene92939:intron | 40.0% | |
| AGTCCAAGACAAAGTTTGTG+AGG | - | chr5.1:33641091-33641110 | MS.gene92939:intron | 40.0% | |
| AGTTTGTGAGGAACATGGAT+TGG | - | chr5.1:33641103-33641122 | MS.gene92939:intron | 40.0% | |
| ATATGCGATCAAACACCTTC+TGG | + | chr5.1:33641146-33641165 | None:intergenic | 40.0% | |
| ATATTGGATGTGGCTGTCAA+TGG | - | chr5.1:33641162-33641181 | MS.gene92939:intron | 40.0% | |
| GAATCTGCTGACATTGTTCT+TGG | - | chr5.1:33641419-33641438 | MS.gene92939:CDS | 40.0% | |
| GACAAAGTTTGTGAGGAACA+TGG | - | chr5.1:33641098-33641117 | MS.gene92939:intron | 40.0% | |
| GGAAGAAGAAATCGAGACAA+GGG | + | chr5.1:33639763-33639782 | None:intergenic | 40.0% | |
| GGAAGGTTATTACTTTCAGC+AGG | - | chr5.1:33641031-33641050 | MS.gene92939:intron | 40.0% | |
| GGGGTTTGATTCCTTACAAT+AGG | - | chr5.1:33640674-33640693 | MS.gene92939:CDS | 40.0% | |
| GTAATAACCTTCCCTTTCCA+TGG | + | chr5.1:33641024-33641043 | None:intergenic | 40.0% | |
| GTATCAGAAACTAGTTGTGC+TGG | - | chr5.1:33641500-33641519 | MS.gene92939:CDS | 40.0% | |
| GTTCCTCACAAACTTTGTCT+TGG | + | chr5.1:33641097-33641116 | None:intergenic | 40.0% | |
| GTTTGATCGCATATTGGATG+TGG | - | chr5.1:33641152-33641171 | MS.gene92939:intron | 40.0% | |
| GTTTGTGAGGAACATGGATT+GGG | - | chr5.1:33641104-33641123 | MS.gene92939:intron | 40.0% | |
| TATTGGATGTGGCTGTCAAT+GGG | - | chr5.1:33641163-33641182 | MS.gene92939:intron | 40.0% | |
| TCGTTTGAGGAAAGATGTGT+TGG | - | chr5.1:33640597-33640616 | MS.gene92939:CDS | 40.0% | |
| TGGAAGAAGAAATCGAGACA+AGG | + | chr5.1:33639764-33639783 | None:intergenic | 40.0% | |
| TTACAATAGGGTTGCTTCTG+TGG | - | chr5.1:33640687-33640706 | MS.gene92939:CDS | 40.0% | |
| TTAGCACCAATAAACACCTC+AGG | + | chr5.1:33640649-33640668 | None:intergenic | 40.0% | |
| ! | CAACTAGTTTCTGATACTCG+GGG | + | chr5.1:33641497-33641516 | None:intergenic | 40.0% |
| ! | CCTAGTGATTGCTTGGTAAT+CGG | + | chr5.1:33641274-33641293 | None:intergenic | 40.0% |
| ! | TGAAGGAACATTGGTAGCTA+GGG | + | chr5.1:33639966-33639985 | None:intergenic | 40.0% |
| ! | TGTTGTAGTTCTTGTTGTGG+TGG | + | chr5.1:33640168-33640187 | None:intergenic | 40.0% |
| ! | TTTGTGAGGAACATGGATTG+GGG | - | chr5.1:33641105-33641124 | MS.gene92939:intron | 40.0% |
| !! | AAGGAGTATCAGGAACAACA+TGG | + | chr5.1:33639784-33639803 | None:intergenic | 40.0% |
| !! | ACATTGGTAGCTAGGGTTTT+AGG | + | chr5.1:33639959-33639978 | None:intergenic | 40.0% |
| !! | AGCAGCAAGACTGATTTTTG+TGG | + | chr5.1:33640446-33640465 | None:intergenic | 40.0% |
| !! | ATGCTTTGAAGGAAGAGAAG+AGG | - | chr5.1:33640290-33640309 | MS.gene92939:CDS | 40.0% |
| !! | CATTGGTAGCTAGGGTTTTA+GGG | + | chr5.1:33639958-33639977 | None:intergenic | 40.0% |
| !! | CGTTGATGATTTGCTCAAGA+AGG | - | chr5.1:33640888-33640907 | MS.gene92939:CDS | 40.0% |
| !! | GAAGGTGTTTGATCGCATAT+TGG | - | chr5.1:33641146-33641165 | MS.gene92939:intron | 40.0% |
| !! | GATGAACACTGATTTCCAGA+AGG | - | chr5.1:33641128-33641147 | MS.gene92939:intron | 40.0% |
| !! | GCAGCAAGACTGATTTTTGT+GGG | + | chr5.1:33640445-33640464 | None:intergenic | 40.0% |
| !!! | CTGTGCCTCAGATAGTTTTT+TGG | - | chr5.1:33641322-33641341 | MS.gene92939:CDS | 40.0% |
| !!! | TCAACCCCTTTTTTAAGGAG+AGG | - | chr5.1:33640121-33640140 | MS.gene92939:CDS | 40.0% |
| AACCTTCGAGAAGACGATAG+AGG | + | chr5.1:33640027-33640046 | None:intergenic | 45.0% | |
| AACGAGAGTTAAGGCTCAGA+AGG | - | chr5.1:33640258-33640277 | MS.gene92939:CDS | 45.0% | |
| AACGCAGAAAGAAGAGTGGA+TGG | - | chr5.1:33640060-33640079 | MS.gene92939:CDS | 45.0% | |
| AACTCCAACACCTTCCTCAA+CGG | + | chr5.1:33640625-33640644 | None:intergenic | 45.0% | |
| AATGCTACACACACCTCCAT+AGG | + | chr5.1:33640970-33640989 | None:intergenic | 45.0% | |
| ACGTCAAGGATAACAAAGGG+TGG | - | chr5.1:33640194-33640213 | MS.gene92939:CDS | 45.0% | |
| AGAAGACGATAGAGGATCTC+AGG | + | chr5.1:33640019-33640038 | None:intergenic | 45.0% | |
| AGACTCCATCGTGACTAAAG+AGG | - | chr5.1:33640231-33640250 | MS.gene92939:CDS | 45.0% | |
| ATAGGGTTCGTGATCGTTTG+AGG | - | chr5.1:33640584-33640603 | MS.gene92939:CDS | 45.0% | |
| ATCAAGCGTCTGCAAACTCT+TGG | - | chr5.1:33641244-33641263 | MS.gene92939:CDS | 45.0% | |
| ATCCTCTATCGTCTTCTCGA+AGG | - | chr5.1:33640022-33640041 | MS.gene92939:CDS | 45.0% | |
| ATGCTACACACACCTCCATA+GGG | + | chr5.1:33640969-33640988 | None:intergenic | 45.0% | |
| CAAAGGAAGAGTCAACGGAA+GGG | + | chr5.1:33640477-33640496 | None:intergenic | 45.0% | |
| CAAGGATAACAAAGGGTGGA+AGG | - | chr5.1:33640198-33640217 | MS.gene92939:CDS | 45.0% | |
| CCGATCAAAGGAAGAGTCAA+CGG | + | chr5.1:33640482-33640501 | None:intergenic | 45.0% | |
| CCGATTACCAAGCAATCACT+AGG | - | chr5.1:33641271-33641290 | MS.gene92939:CDS | 45.0% | |
| CCTCAGCTTCATGTGATTGA+GGG | - | chr5.1:33641057-33641076 | MS.gene92939:intron | 45.0% | |
| CTACAACAACAAGGACGTCA+AGG | - | chr5.1:33640180-33640199 | MS.gene92939:CDS | 45.0% | |
| CTCAGCTTCATGTGATTGAG+GGG | - | chr5.1:33641058-33641077 | MS.gene92939:intron | 45.0% | |
| CTGAATTGAACGAGGAACCA+TGG | - | chr5.1:33641004-33641023 | MS.gene92939:CDS | 45.0% | |
| GAAGACGATAGAGGATCTCA+GGG | + | chr5.1:33640018-33640037 | None:intergenic | 45.0% | |
| GAGGTTACAGACGAGTTTGA+GGG | + | chr5.1:33639861-33639880 | None:intergenic | 45.0% | |
| GAGTGGATGGAAAGGAAATC+TGG | - | chr5.1:33640073-33640092 | MS.gene92939:CDS | 45.0% | |
| GCAAAACGCAGAAAGAAGAG+TGG | - | chr5.1:33640056-33640075 | MS.gene92939:CDS | 45.0% | |
| GGAAACTGCTCATGCTTTGA+AGG | - | chr5.1:33640279-33640298 | MS.gene92939:CDS | 45.0% | |
| GTTAGCGAGTGAAGGAACAT+TGG | + | chr5.1:33639975-33639994 | None:intergenic | 45.0% | |
| GTTCCTTCACTCGCTAACTT+TGG | - | chr5.1:33639977-33639996 | MS.gene92939:CDS | 45.0% | |
| TAGCCAAAGTTAGCGAGTGA+AGG | + | chr5.1:33639983-33640002 | None:intergenic | 45.0% | |
| TATAAGCCCTGTAGAAGCCA+TGG | - | chr5.1:33641455-33641474 | MS.gene92939:CDS | 45.0% | |
| TATGTGAGACCATTGCCAAG+AGG | - | chr5.1:33640512-33640531 | MS.gene92939:CDS | 45.0% | |
| TCAAAGGAAGAGTCAACGGA+AGG | + | chr5.1:33640478-33640497 | None:intergenic | 45.0% | |
| TCAAGCGTCTGCAAACTCTT+GGG | - | chr5.1:33641245-33641264 | MS.gene92939:CDS | 45.0% | |
| TCAGCTTCATGTGATTGAGG+GGG | - | chr5.1:33641059-33641078 | MS.gene92939:intron | 45.0% | |
| TGAACGAGGAACCATGGAAA+GGG | - | chr5.1:33641010-33641029 | MS.gene92939:CDS | 45.0% | |
| TGCTCAAGAAGGGAAAGATG+AGG | - | chr5.1:33640899-33640918 | MS.gene92939:CDS | 45.0% | |
| TGTCAATGGGAATCTCAAGG+AGG | - | chr5.1:33641176-33641195 | MS.gene92939:intron | 45.0% | |
| TTACCAGTGGAGAGAAACGT+TGG | + | chr5.1:33639740-33639759 | None:intergenic | 45.0% | |
| TTGAACGAGGAACCATGGAA+AGG | - | chr5.1:33641009-33641028 | MS.gene92939:CDS | 45.0% | |
| TTGCTGTGTGTGATGTGTCT+GGG | - | chr5.1:33640929-33640948 | MS.gene92939:CDS | 45.0% | |
| TTGGAATCTGAGAGACTCGA+AGG | - | chr5.1:33641341-33641360 | MS.gene92939:CDS | 45.0% | |
| ! | AGGAGGCGCATTATGCTTAT+AGG | - | chr5.1:33640566-33640585 | MS.gene92939:CDS | 45.0% |
| ! | ATGGAGGTGTGTGTAGCATT+GGG | - | chr5.1:33640970-33640989 | MS.gene92939:CDS | 45.0% |
| ! | ATGTGTCTGGGAGTATGCAT+GGG | - | chr5.1:33640941-33640960 | MS.gene92939:CDS | 45.0% |
| ! | GAAGTACTTGGAGGATGTGA+AGG | - | chr5.1:33640762-33640781 | MS.gene92939:CDS | 45.0% |
| ! | GAGTTGCCTGAGGTGTTTAT+TGG | - | chr5.1:33640640-33640659 | MS.gene92939:CDS | 45.0% |
| ! | GGAGGCGCATTATGCTTATA+GGG | - | chr5.1:33640567-33640586 | MS.gene92939:CDS | 45.0% |
| ! | GTGAAGGAACATTGGTAGCT+AGG | + | chr5.1:33639967-33639986 | None:intergenic | 45.0% |
| ! | GTTGGTGTCTGAATTGAACG+AGG | - | chr5.1:33640996-33641015 | MS.gene92939:CDS | 45.0% |
| ! | TATGGAGGTGTGTGTAGCAT+TGG | - | chr5.1:33640969-33640988 | MS.gene92939:CDS | 45.0% |
| !! | AGTGTCTCAGAAGGAGTATC+AGG | + | chr5.1:33639794-33639813 | None:intergenic | 45.0% |
| !! | CCGTTGACTCTTCCTTTGAT+CGG | - | chr5.1:33640479-33640498 | MS.gene92939:CDS | 45.0% |
| !! | GAGGTTTGAGAAGTACTTGG+AGG | - | chr5.1:33640753-33640772 | MS.gene92939:CDS | 45.0% |
| !! | GGAGAGGTTTGAGAAGTACT+TGG | - | chr5.1:33640750-33640769 | MS.gene92939:CDS | 45.0% |
| !! | TAACAGCGTTGACCGATCAA+AGG | + | chr5.1:33640494-33640513 | None:intergenic | 45.0% |
| !! | TTGTGAGGAACATGGATTGG+GGG | - | chr5.1:33641106-33641125 | MS.gene92939:intron | 45.0% |
| AAACTCGTCTGTAACCTCCG+TGG | - | chr5.1:33639863-33639882 | MS.gene92939:CDS | 50.0% | |
| ACACCTTCATATTCCTCCCG+AGG | + | chr5.1:33640544-33640563 | None:intergenic | 50.0% | |
| ACCGGCAAGTCCAACAAAGA+AGG | - | chr5.1:33639896-33639915 | MS.gene92939:CDS | 50.0% | |
| ACTTGGAGGATGTGAAGGCA+GGG | - | chr5.1:33640767-33640786 | MS.gene92939:CDS | 50.0% | |
| AGAGGTGGCAACGAGAGTTA+AGG | - | chr5.1:33640249-33640268 | MS.gene92939:CDS | 50.0% | |
| AGGGAAGATCCTCTTGGCAA+TGG | + | chr5.1:33640524-33640543 | None:intergenic | 50.0% | |
| ATCGAGACAAGGGTTACCAG+TGG | + | chr5.1:33639753-33639772 | None:intergenic | 50.0% | |
| CACCTTCATATTCCTCCCGA+GGG | + | chr5.1:33640543-33640562 | None:intergenic | 50.0% | |
| CAGCTTCCATGGCTTCTACA+GGG | + | chr5.1:33641464-33641483 | None:intergenic | 50.0% | |
| CCCTCAATCACATGAAGCTG+AGG | + | chr5.1:33641060-33641079 | None:intergenic | 50.0% | |
| CTCCATCGTGACTAAAGAGG+TGG | - | chr5.1:33640234-33640253 | MS.gene92939:CDS | 50.0% | |
| GCCTCAGCTTCATGTGATTG+AGG | - | chr5.1:33641056-33641075 | MS.gene92939:intron | 50.0% | |
| GCCTTCTTTGTTGGACTTGC+CGG | + | chr5.1:33639900-33639919 | None:intergenic | 50.0% | |
| GGAAGAGAAGAGGATTGCCT+TGG | - | chr5.1:33640300-33640319 | MS.gene92939:CDS | 50.0% | |
| GGAGGTTACAGACGAGTTTG+AGG | + | chr5.1:33639862-33639881 | None:intergenic | 50.0% | |
| GGCTGTCAATGGGAATCTCA+AGG | - | chr5.1:33641173-33641192 | MS.gene92939:intron | 50.0% | |
| GGGAAGACTACTATTGCTGC+TGG | - | chr5.1:33640787-33640806 | MS.gene92939:CDS | 50.0% | |
| GTTACAGACGAGTTTGAGGG+CGG | + | chr5.1:33639858-33639877 | None:intergenic | 50.0% | |
| TACTTGGAGGATGTGAAGGC+AGG | - | chr5.1:33640766-33640785 | MS.gene92939:CDS | 50.0% | |
| TCACCAACGTTTCTCTCCAC+TGG | - | chr5.1:33639734-33639753 | MS.gene92939:CDS | 50.0% | |
| TCGAGAGGCTCAAACTAGCT+TGG | - | chr5.1:33639816-33639835 | MS.gene92939:CDS | 50.0% | |
| TCGGGAGGAATATGAAGGTG+TGG | - | chr5.1:33640543-33640562 | MS.gene92939:CDS | 50.0% | |
| TGCCACCTCTTTAGTCACGA+TGG | + | chr5.1:33640239-33640258 | None:intergenic | 50.0% | |
| TGCTACACACACCTCCATAG+GGG | + | chr5.1:33640968-33640987 | None:intergenic | 50.0% | |
| TTCCCTCGGGAGGAATATGA+AGG | - | chr5.1:33640538-33640557 | MS.gene92939:CDS | 50.0% | |
| TTGCCAAGAGGATCTTCCCT+CGG | - | chr5.1:33640524-33640543 | MS.gene92939:CDS | 50.0% | |
| ! | CTTGCTGTGTGTGATGTGTC+TGG | - | chr5.1:33640928-33640947 | MS.gene92939:CDS | 50.0% |
| ! | GAGTCTTTGCGTGATGGAGA+TGG | - | chr5.1:33640835-33640854 | MS.gene92939:CDS | 50.0% |
| ! | GATGTGTCTGGGAGTATGCA+TGG | - | chr5.1:33640940-33640959 | MS.gene92939:CDS | 50.0% |
| ! | GGAATATGAAGGTGTGGAGG+AGG | - | chr5.1:33640549-33640568 | MS.gene92939:CDS | 50.0% |
| ! | GGAGGAATATGAAGGTGTGG+AGG | - | chr5.1:33640546-33640565 | MS.gene92939:CDS | 50.0% |
| ! | GTGTGTAGCATTGGGGTTGT+TGG | - | chr5.1:33640978-33640997 | MS.gene92939:CDS | 50.0% |
| ! | TGGAGGTGTGTGTAGCATTG+GGG | - | chr5.1:33640971-33640990 | MS.gene92939:CDS | 50.0% |
| !! | AAAGGAGTGGCACTGGTAAG+TGG | - | chr5.1:33641387-33641406 | MS.gene92939:CDS | 50.0% |
| !! | AAGATGTGTTGGTGCCGTTG+AGG | - | chr5.1:33640608-33640627 | MS.gene92939:CDS | 50.0% |
| CACTCAGAAAGGAGTGGCAC+TGG | - | chr5.1:33641380-33641399 | MS.gene92939:CDS | 55.0% | |
| CCTTTCTGAGTGGATGGCAC+CGG | + | chr5.1:33641372-33641391 | None:intergenic | 55.0% | |
| CGAGGAACCATGGAAAGGGA+AGG | - | chr5.1:33641014-33641033 | MS.gene92939:CDS | 55.0% | |
| CTCTCGACGAGTGTCTCAGA+AGG | + | chr5.1:33639803-33639822 | None:intergenic | 55.0% | |
| CTTTCTGAGTGGATGGCACC+GGG | + | chr5.1:33641371-33641390 | None:intergenic | 55.0% | |
| GAGTATGCATGGGACCCCTA+TGG | - | chr5.1:33640951-33640970 | MS.gene92939:CDS | 55.0% | |
| GCAGCTTCCATGGCTTCTAC+AGG | + | chr5.1:33641465-33641484 | None:intergenic | 55.0% | |
| GCCACTCCTTTCTGAGTGGA+TGG | + | chr5.1:33641378-33641397 | None:intergenic | 55.0% | |
| GCCATCCACTCAGAAAGGAG+TGG | - | chr5.1:33641374-33641393 | MS.gene92939:CDS | 55.0% | |
| GCTTCTATGCTGCCGCTCTA+TGG | - | chr5.1:33639918-33639937 | MS.gene92939:CDS | 55.0% | |
| GTGAAGTGGCTGAGTTGCAG+TGG | - | chr5.1:33640857-33640876 | MS.gene92939:CDS | 55.0% | |
| TATGCATGGGACCCCTATGG+AGG | - | chr5.1:33640954-33640973 | MS.gene92939:CDS | 55.0% | |
| TGCCAAGAGGATCTTCCCTC+GGG | - | chr5.1:33640525-33640544 | MS.gene92939:CDS | 55.0% | |
| TGTAACCTCCGTGGTGTTCG+TGG | - | chr5.1:33639872-33639891 | MS.gene92939:CDS | 55.0% | |
| TTTCTGAGTGGATGGCACCG+GGG | + | chr5.1:33641370-33641389 | None:intergenic | 55.0% | |
| ! | CAGTGCCACTCCTTTCTGAG+TGG | + | chr5.1:33641382-33641401 | None:intergenic | 55.0% |
| ! | GCGTGATGGAGATGGTGAAG+TGG | - | chr5.1:33640843-33640862 | MS.gene92939:CDS | 55.0% |
| !! | CTTCTGAGACACTCGTCGAG+AGG | - | chr5.1:33639801-33639820 | MS.gene92939:CDS | 55.0% |
| !! | GAAGGTGTTGGAGTTGCCTG+AGG | - | chr5.1:33640630-33640649 | MS.gene92939:CDS | 55.0% |
| !! | TGTGTTGGTGCCGTTGAGGA+AGG | - | chr5.1:33640612-33640631 | MS.gene92939:CDS | 55.0% |
| CAAGAGGATCTTCCCTCGGG+AGG | - | chr5.1:33640528-33640547 | MS.gene92939:CDS | 60.0% | |
| CTCCCGAGGGAAGATCCTCT+TGG | + | chr5.1:33640530-33640549 | None:intergenic | 60.0% | |
| CTCCGTGGTGTTCGTGGTAC+CGG | - | chr5.1:33639878-33639897 | MS.gene92939:CDS | 60.0% | |
| TGCCGGTACCACGAACACCA+CGG | + | chr5.1:33639883-33639902 | None:intergenic | 60.0% | |
| !! | CCGGTGCCATCCACTCAGAA+AGG | - | chr5.1:33641369-33641388 | MS.gene92939:CDS | 60.0% |
| !! | GGTGCCGTTGAGGAAGGTGT+TGG | - | chr5.1:33640618-33640637 | MS.gene92939:CDS | 60.0% |
| CGGTACCACGAACACCACGG+AGG | + | chr5.1:33639880-33639899 | None:intergenic | 65.0% | |
| CTGATACTCGGGGCCAGCGA+TGG | + | chr5.1:33641487-33641506 | None:intergenic | 65.0% | |
| GAGAGACTCGAAGGCCACCC+CGG | - | chr5.1:33641350-33641369 | MS.gene92939:CDS | 65.0% | |
| GCCAGCGATGGCAGCTTCCA+TGG | + | chr5.1:33641475-33641494 | None:intergenic | 65.0% | |
| GCCATGGAAGCTGCCATCGC+TGG | - | chr5.1:33641471-33641490 | MS.gene92939:CDS | 65.0% | |
| ! | CTGAGTGGATGGCACCGGGG+TGG | + | chr5.1:33641367-33641386 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 33639731 | 33641527 | 33639731 | ID=MS.gene92939 |
| chr5.1 | mRNA | 33639731 | 33641527 | 33639731 | ID=MS.gene92939.t1;Parent=MS.gene92939 |
| chr5.1 | exon | 33641215 | 33641527 | 33641215 | ID=MS.gene92939.t1.exon1;Parent=MS.gene92939.t1 |
| chr5.1 | CDS | 33641215 | 33641527 | 33641215 | ID=cds.MS.gene92939.t1;Parent=MS.gene92939.t1 |
| chr5.1 | exon | 33639731 | 33641046 | 33639731 | ID=MS.gene92939.t1.exon2;Parent=MS.gene92939.t1 |
| chr5.1 | CDS | 33639731 | 33641046 | 33639731 | ID=cds.MS.gene92939.t1;Parent=MS.gene92939.t1 |
| Gene Sequence |
| Protein sequence |
