AlfalfaGEDB | MS.gene07612

M. sativa cultivar XinJiangDaYe / MS.gene07612

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0043565 GO:0097159 GO:1901363 GO:1990837
PFAM: PF03479.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07612.t1	AFK41919.1	91.9	309	20	3	1	308	1	305	2.60E-120	441.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07612.t1	Q8GWQ2	47.2	318	121	9	1	308	1	281	3.1e-53	210.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07612.t1	G7I674	92.9	309	17	3	1	308	1	305	1.9e-120	441.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene07612	-0.814489	1.50E-51	-1.69E-46
MS.gene049171	MS.gene07612	-0.869262	3.53E-66	-1.69E-46
MS.gene049217	MS.gene07612	-0.855796	4.96E-62	-1.69E-46
MS.gene049222	MS.gene07612	-0.863627	2.18E-64	-1.69E-46
MS.gene049232	MS.gene07612	-0.819633	1.05E-52	-1.69E-46
MS.gene049281	MS.gene07612	0.840345	9.19E-58	-1.69E-46
MS.gene049285	MS.gene07612	-0.857739	1.33E-62	-1.69E-46
MS.gene049320	MS.gene07612	-0.868217	7.69E-66	-1.69E-46
MS.gene04939	MS.gene07612	-0.800836	1.20E-48	-1.69E-46
MS.gene049609	MS.gene07612	-0.843553	1.31E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07612.t1	MTR_1g079810	97.411	309	3	3	1	308	1	305	0.0	591
MS.gene07612.t1	MTR_1g073860	54.430	316	110	10	1	308	33	322	9.02e-76	235
MS.gene07612.t1	MTR_1g044155	63.556	225	77	4	1	224	55	275	7.70e-75	234
MS.gene07612.t1	MTR_5g091630	62.963	162	60	0	73	234	45	206	2.74e-63	201
MS.gene07612.t1	MTR_5g011520	63.158	190	63	1	46	228	64	253	8.34e-63	202
MS.gene07612.t1	MTR_8g036060	71.084	166	48	0	75	240	86	251	5.05e-62	199
MS.gene07612.t1	MTR_3g068035	66.667	153	45	1	85	237	89	235	7.09e-60	194
MS.gene07612.t1	MTR_7g080980	62.500	152	57	0	84	235	66	217	2.71e-56	183
MS.gene07612.t1	MTR_4g098450	63.087	149	55	0	82	230	83	231	1.68e-52	174
MS.gene07612.t1	MTR_3g100470	41.778	225	122	4	24	244	26	245	1.08e-51	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07612.t1	AT4G14465	50.629	318	110	10	1	308	1	281	3.41e-79	242
MS.gene07612.t1	AT3G04570	61.603	237	78	3	1	224	1	237	3.48e-79	243
MS.gene07612.t1	AT1G76500	59.259	189	63	2	47	226	49	232	7.91e-65	206
MS.gene07612.t1	AT2G35270	64.744	156	55	0	75	230	78	233	2.46e-62	199
MS.gene07612.t1	AT2G42940	59.770	174	65	1	75	243	53	226	4.25e-61	195
MS.gene07612.t1	AT3G60870	60.927	151	57	1	69	219	53	201	6.62e-58	187
MS.gene07612.t1	AT2G45430	67.251	171	51	3	71	237	85	254	1.33e-57	188
MS.gene07612.t1	AT4G22810	51.471	272	111	7	41	308	70	324	1.10e-56	186
MS.gene07612.t1	AT4G12050	66.456	158	52	1	74	230	117	274	5.68e-56	184
MS.gene07612.t1	AT4G17800	64.138	145	52	0	84	228	91	235	3.13e-53	176

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Find 121 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGTGGTGGACCGGAC+CGG	0.521308	1.3:-56529978	MS.gene07612:CDS
AACAATGTTGGTGGTAATTT+GGG	0.370360	1.3:-56529173	MS.gene07612:CDS
AACAGCGACGAACACAAAGG+AGG	0.671516	1.3:-56529809	MS.gene07612:CDS
AACCTGATGGACGGCCTCTT+GGG	0.312471	1.3:+56529756	None:intergenic
AATTAGTATACTTAGTATGG+TGG	0.597096	1.3:+56529068	None:intergenic
AATTTGGGTGTTTCAAATGG+AGG	0.577814	1.3:-56529158	MS.gene07612:CDS
ACAAGTGGTTGGCGGTGGTG+TGG	0.585162	1.3:-56529414	MS.gene07612:CDS
ACATGGCTTCGTAGCGCGTT+AGG	0.352279	1.3:+56529689	None:intergenic
ACCATAGCTCCGGGACCTGT+AGG	0.618743	1.3:+56529545	None:intergenic
ACCATGACTAGCATGACCCC+AGG	0.526448	1.3:+56529094	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTTGACTATTTATCTTTC+TGG	-	chr1.3:56529616-56529635	MS.gene07612:CDS	30.0%
TTGACTATTTATCTTTCTGG+AGG	-	chr1.3:56529619-56529638	MS.gene07612:CDS	30.0%
TTTGATATACTCTCTTTGAC+CGG	-	chr1.3:56529556-56529575	MS.gene07612:CDS	30.0%
AATTTGGGTGTTTCAAATGG+AGG	-	chr1.3:56529904-56529923	MS.gene07612:CDS	35.0%
ATGAAGCTTATAATTCTCCC+TGG	-	chr1.3:56529950-56529969	MS.gene07612:CDS	35.0%
GGTAATTTGGGTGTTTCAAA+TGG	-	chr1.3:56529901-56529920	MS.gene07612:CDS	35.0%
TGAAGCTTATAATTCTCCCT+GGG	-	chr1.3:56529951-56529970	MS.gene07612:CDS	35.0%
ATTTGCATTCTAAGCGCAAG+TGG	-	chr1.3:56529466-56529485	MS.gene07612:CDS	40.0%
CAGTTAGCAATTGGATCTGT+TGG	-	chr1.3:56529838-56529857	MS.gene07612:CDS	40.0%
CTGTCGTTAACGTTTCTCTT+CGG	-	chr1.3:56529491-56529510	MS.gene07612:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	56529079	56530005	56529079	ID=MS.gene07612
chr1.3	mRNA	56529079	56530005	56529079	ID=MS.gene07612.t1;Parent=MS.gene07612
chr1.3	exon	56529079	56530005	56529079	ID=MS.gene07612.t1.exon1;Parent=MS.gene07612.t1
chr1.3	CDS	56529079	56530005	56529079	ID=cds.MS.gene07612.t1;Parent=MS.gene07612.t1

Gene Sequence

>MS.gene07612

ATGGCAAACAGGTGGTGGACCGGACCGGTTGGTCTAGGAGGGATGGACAACTCAGTAACCTCCTCTCCACTAGGAAAACCGGATCTGGGTTTCTCCATGAACCAAAGTGCTGTAACAGGAGTAAACAACATGAACAACAACAACAACAATGAAGAAGAAGAAGATGAGAAAGAAAACAGCGACGAACACAAAGGAGGTGGAATAGAAACAAACACCTCCACGCGCCGCCCAAGAGGCCGTCCATCAGGTTCAAAAAACAAACCAAAACCACCGATATTCATAACAAGAGATAGCCCTAACGCGCTACGAAGCCATGTCATGGAAGTAGCATCAGGAACTGATATATCAGATAGCATCGTTCAGTTTGCAAGAAAACGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACTGTCGTTAACGTTTCTCTTCGGCAACCTACAGGTCCCGGAGCTATGGTGGCGCTTCCTGGGAGATTTGATATACTCTCTTTGACCGGTTCAGTGCTTCCTGGACCTTCACCGCCGGGAGCTACTGGTTTGACTATTTATCTTTCTGGAGGACAAGGACAAGTGGTTGGCGGTGGTGTGGTTGGTCCACTTGTGGCGGCCGGGCCGGTTATGTTGATGGCGGCAACATTTTCGAATGCGACGTATGAGAGGCTGCCGGTTGAGGATGGTGATGATCAGGAAGGGCATCAAGGTGGTGGTGGTGGTGGTGGTGACGACGAGTCTCCGACGCGTGCCGCGGGGATGGGACAGTTAGCAATTGGATCTGTTGGAGAAGGTTCTTCAATTCCACCAGGCTATAACAATGTTGGTGGTAATTTGGGTGTTTCAAATGGAGGACAACAACAATTGTTGAATAATCATGAAGCTTATAATTCTCCCTGGGGTCATGCTAGTCATGGTAGACCACCATACTAA

Protein sequence

>MS.gene07612.t1

MANRWWTGPVGLGGMDNSVTSSPLGKPDLGFSMNQSAVTGVNNMNNNNNNEEEEDEKENSDEHKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDISDSIVQFARKRQRGICILSASGTVVNVSLRQPTGPGAMVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGHQGGGGGGGDDESPTRAAGMGQLAIGSVGEGSSIPPGYNNVGGNLGVSNGGQQQLLNNHEAYNSPWGHASHGRPPY