AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07612


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07612.t1 MTR_1g079810 97.411 309 3 3 1 308 1 305 0.0 591
MS.gene07612.t1 MTR_1g073860 54.430 316 110 10 1 308 33 322 9.02e-76 235
MS.gene07612.t1 MTR_1g044155 63.556 225 77 4 1 224 55 275 7.70e-75 234
MS.gene07612.t1 MTR_5g091630 62.963 162 60 0 73 234 45 206 2.74e-63 201
MS.gene07612.t1 MTR_5g011520 63.158 190 63 1 46 228 64 253 8.34e-63 202
MS.gene07612.t1 MTR_8g036060 71.084 166 48 0 75 240 86 251 5.05e-62 199
MS.gene07612.t1 MTR_3g068035 66.667 153 45 1 85 237 89 235 7.09e-60 194
MS.gene07612.t1 MTR_7g080980 62.500 152 57 0 84 235 66 217 2.71e-56 183
MS.gene07612.t1 MTR_4g098450 63.087 149 55 0 82 230 83 231 1.68e-52 174
MS.gene07612.t1 MTR_3g100470 41.778 225 122 4 24 244 26 245 1.08e-51 172
MS.gene07612.t1 MTR_5g080580 60.452 177 68 1 48 224 64 238 4.50e-51 171
MS.gene07612.t1 MTR_5g066020 42.775 173 90 4 84 251 60 228 5.07e-39 138
MS.gene07612.t1 MTR_5g089600 33.951 162 96 3 72 222 74 235 1.77e-24 99.4
MS.gene07612.t1 MTR_4g057487 32.941 170 104 2 72 231 14 183 3.43e-24 98.6
MS.gene07612.t1 MTR_5g010330 36.207 174 98 5 70 231 99 271 3.58e-23 97.8
MS.gene07612.t1 MTR_1g079780 41.912 136 75 2 84 215 88 223 8.43e-23 96.7
MS.gene07612.t1 MTR_4g057525 31.176 170 107 2 68 227 29 198 1.60e-21 91.7
MS.gene07612.t1 MTR_7g116320 46.903 113 60 0 102 214 143 255 1.62e-20 90.9
MS.gene07612.t1 MTR_1g073870 43.791 153 39 4 70 222 47 152 1.84e-20 88.2
MS.gene07612.t1 MTR_1g053685 30.952 168 107 1 72 230 82 249 4.91e-20 88.2
MS.gene07612.t1 MTR_1g061530 44.348 115 58 3 105 214 144 257 1.45e-19 88.2
MS.gene07612.t1 MTR_7g116320 44.800 125 65 1 102 222 143 267 1.81e-19 86.7
MS.gene07612.t1 MTR_1g032910 32.203 177 104 4 69 231 95 269 3.65e-19 86.3
MS.gene07612.t1 MTR_6g061670 39.655 116 67 1 102 214 130 245 2.37e-18 84.3
MS.gene07612.t1 MTR_7g077120 37.297 185 97 5 67 235 119 300 2.72e-18 84.3
MS.gene07612.t1 MTR_6g061670 39.655 116 67 1 102 214 125 240 3.24e-18 83.6
MS.gene07612.t1 MTR_5g089700 30.128 156 100 3 73 219 73 228 6.76e-17 78.6
MS.gene07612.t1 MTR_5g089090 32.515 163 98 2 68 221 21 180 7.93e-17 77.8
MS.gene07612.t1 MTR_1g076710 41.379 116 64 2 102 214 134 248 7.11e-16 77.4
MS.gene07612.t1 MTR_8g036160 41.228 114 63 1 105 214 145 258 1.97e-15 76.3
MS.gene07612.t1 MTR_4g055813 35.156 128 81 2 101 226 18 145 2.03e-15 75.5
MS.gene07612.t1 MTR_4g055803 37.008 127 68 3 105 222 128 251 6.95e-15 75.1
MS.gene07612.t1 MTR_8g098390 32.000 150 91 4 93 233 157 304 1.03e-14 73.9
MS.gene07612.t1 MTR_7g074935 47.761 67 35 0 105 171 130 196 1.39e-14 73.6
MS.gene07612.t1 MTR_4g098460 33.553 152 76 5 75 214 57 195 1.69e-14 72.8
MS.gene07612.t1 MTR_8g031100 37.576 165 95 3 75 231 125 289 2.30e-14 73.2
MS.gene07612.t1 MTR_4g069110 36.842 95 60 0 73 167 32 126 6.41e-14 68.9
MS.gene07612.t1 MTR_8g078930 32.593 135 81 3 106 231 5 138 1.13e-13 68.2
MS.gene07612.t1 MTR_4g055833 38.211 123 64 3 101 214 121 240 1.65e-13 70.5
MS.gene07612.t1 MTR_5g011620 33.945 109 70 1 106 214 119 225 2.76e-13 70.9
MS.gene07612.t1 MTR_5g011610 33.333 117 75 2 106 221 62 176 1.30e-12 67.8
MS.gene07612.t1 MTR_4g098460 32.484 157 76 6 75 214 57 200 1.91e-12 67.0
MS.gene07612.t1 MTR_5g011680 32.258 124 77 2 105 221 145 268 5.19e-12 65.5
MS.gene07612.t1 MTR_4g101990 40.299 67 40 0 105 171 147 213 2.15e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07612.t1 AT4G14465 50.629 318 110 10 1 308 1 281 3.41e-79 242
MS.gene07612.t1 AT3G04570 61.603 237 78 3 1 224 1 237 3.48e-79 243
MS.gene07612.t1 AT1G76500 59.259 189 63 2 47 226 49 232 7.91e-65 206
MS.gene07612.t1 AT2G35270 64.744 156 55 0 75 230 78 233 2.46e-62 199
MS.gene07612.t1 AT2G42940 59.770 174 65 1 75 243 53 226 4.25e-61 195
MS.gene07612.t1 AT3G60870 60.927 151 57 1 69 219 53 201 6.62e-58 187
MS.gene07612.t1 AT2G45430 67.251 171 51 3 71 237 85 254 1.33e-57 188
MS.gene07612.t1 AT4G22810 51.471 272 111 7 41 308 70 324 1.10e-56 186
MS.gene07612.t1 AT4G12050 66.456 158 52 1 74 230 117 274 5.68e-56 184
MS.gene07612.t1 AT4G17800 64.138 145 52 0 84 228 91 235 3.13e-53 176
MS.gene07612.t1 AT3G55560 48.963 241 103 5 1 224 1 238 7.03e-52 173
MS.gene07612.t1 AT5G49700 43.192 213 106 5 74 276 55 262 5.22e-50 167
MS.gene07612.t1 AT4G35390 66.000 150 49 1 75 222 63 212 7.05e-50 167
MS.gene07612.t1 AT1G20900 55.497 191 70 2 49 224 54 244 7.67e-49 165
MS.gene07612.t1 AT1G14490 43.956 182 85 5 76 242 6 185 4.70e-39 137
MS.gene07612.t1 AT1G14490 43.956 182 85 5 76 242 25 204 7.05e-39 137
MS.gene07612.t1 AT4G25320 44.248 113 60 1 105 214 169 281 1.51e-21 94.4
MS.gene07612.t1 AT5G51590 43.363 113 61 1 105 214 181 293 1.78e-21 94.4
MS.gene07612.t1 AT5G62260 39.516 124 72 1 102 222 160 283 2.27e-21 92.0
MS.gene07612.t1 AT3G04590 31.754 211 121 4 105 306 174 370 3.83e-21 93.2
MS.gene07612.t1 AT1G63470 39.726 146 81 3 75 214 147 291 4.13e-21 92.8
MS.gene07612.t1 AT4G12080 41.739 115 60 2 105 214 173 285 5.37e-21 92.0
MS.gene07612.t1 AT3G04590 36.232 138 76 1 105 242 174 299 3.26e-20 89.4
MS.gene07612.t1 AT5G62260 40.517 116 66 1 102 214 160 275 4.18e-20 90.1
MS.gene07612.t1 AT5G62260 40.517 116 66 1 102 214 160 275 4.18e-20 90.1
MS.gene07612.t1 AT2G45850 35.948 153 92 3 68 214 125 277 1.82e-19 87.8
MS.gene07612.t1 AT2G45850 35.948 153 92 3 68 214 125 277 1.82e-19 87.8
MS.gene07612.t1 AT2G45850 36.364 154 92 3 68 215 125 278 4.52e-19 85.5
MS.gene07612.t1 AT4G17950 37.500 192 100 6 75 261 196 372 6.61e-19 87.0
MS.gene07612.t1 AT2G33620 38.028 142 84 3 76 214 138 278 4.07e-18 84.0
MS.gene07612.t1 AT2G33620 38.028 142 84 3 76 214 138 278 4.07e-18 84.0
MS.gene07612.t1 AT2G33620 38.028 142 84 3 76 214 138 278 4.07e-18 84.0
MS.gene07612.t1 AT2G33620 38.028 142 84 3 76 214 138 278 4.07e-18 84.0
MS.gene07612.t1 AT4G00200 39.850 133 66 2 105 234 126 247 1.68e-14 73.2
MS.gene07612.t1 AT4G00200 39.850 133 66 2 105 234 126 247 1.68e-14 73.2
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 130 274 3.95e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 130 274 3.95e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 124 268 4.79e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 124 268 4.79e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 124 268 4.79e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 124 268 4.79e-14 72.4
MS.gene07612.t1 AT1G63480 32.192 146 92 3 75 214 124 268 4.79e-14 72.4
MS.gene07612.t1 AT5G46640 41.379 145 78 3 74 214 154 295 2.27e-13 70.5
MS.gene07612.t1 AT3G61310 34.459 148 91 3 73 214 132 279 2.97e-12 67.0
MS.gene07612.t1 AT4G22770 39.823 113 65 1 105 214 153 265 3.80e-12 66.6
MS.gene07612.t1 AT4G22770 39.823 113 65 1 105 214 153 265 3.80e-12 66.6

Find 121 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGACTATTTATCTTTC+TGG 0.085538 1.3:-56529446 MS.gene07612:CDS
GGAGCTATGGTGGCGCTTCC+TGG 0.123030 1.3:-56529533 MS.gene07612:CDS
TAACAATGTTGGTGGTAATT+TGG 0.176970 1.3:-56529174 MS.gene07612:CDS
GGGCATCAAGGTGGTGGTGG+TGG 0.274335 1.3:-56529290 MS.gene07612:CDS
GTTAATTAGTATACTTAGTA+TGG 0.281421 1.3:+56529065 None:intergenic
CATCAAGGTGGTGGTGGTGG+TGG 0.310580 1.3:-56529287 MS.gene07612:CDS
TGTTACAGCACTTTGGTTCA+TGG 0.311013 1.3:+56529889 None:intergenic
AACCTGATGGACGGCCTCTT+GGG 0.312471 1.3:+56529756 None:intergenic
GTTATGAATATCGGTGGTTT+TGG 0.313396 1.3:+56529722 None:intergenic
GGCCGGGCCGGTTATGTTGA+TGG 0.324168 1.3:-56529375 MS.gene07612:CDS
TCCACTAGGAAAACCGGATC+TGG 0.327318 1.3:-56529918 MS.gene07612:CDS
GAACCTGATGGACGGCCTCT+TGG 0.345631 1.3:+56529755 None:intergenic
ACATGGCTTCGTAGCGCGTT+AGG 0.352279 1.3:+56529689 None:intergenic
TTGACCGGTTCAGTGCTTCC+TGG 0.357484 1.3:-56529491 MS.gene07612:CDS
AACAATGTTGGTGGTAATTT+GGG 0.370360 1.3:-56529173 MS.gene07612:CDS
CCTTCACCGCCGGGAGCTAC+TGG 0.381049 1.3:-56529467 MS.gene07612:CDS
GGTAATTTGGGTGTTTCAAA+TGG 0.389870 1.3:-56529161 MS.gene07612:CDS
CTATCTCTTGTTATGAATAT+CGG 0.390991 1.3:+56529713 None:intergenic
TCCACTTGTGGCGGCCGGGC+CGG 0.400817 1.3:-56529387 MS.gene07612:CDS
GTTGGTCCACTTGTGGCGGC+CGG 0.404963 1.3:-56529392 MS.gene07612:CDS
ATGAACCAAAGTGCTGTAAC+AGG 0.409806 1.3:-56529887 MS.gene07612:CDS
TGGACCGGACCGGTTGGTCT+AGG 0.409931 1.3:-56529968 MS.gene07612:CDS
CGCCCAAGAGGCCGTCCATC+AGG 0.416707 1.3:-56529758 MS.gene07612:CDS
TCCGACGCGTGCCGCGGGGA+TGG 0.423656 1.3:-56529249 MS.gene07612:CDS
CAGTTAGCAATTGGATCTGT+TGG 0.425855 1.3:-56529224 MS.gene07612:CDS
GAGCTATGGTGGCGCTTCCT+GGG 0.429894 1.3:-56529532 MS.gene07612:CDS
GAGTCTCCGACGCGTGCCGC+GGG 0.430495 1.3:-56529254 MS.gene07612:CDS
CTCCTCTCCACTAGGAAAAC+CGG 0.439999 1.3:-56529924 MS.gene07612:CDS
ACTCAACTTTGATGGCAAAC+AGG 0.443330 1.3:-56529994 None:intergenic
CCGACGCGTGCCGCGGGGAT+GGG 0.452814 1.3:-56529248 MS.gene07612:CDS
AGGAAGCGCCACCATAGCTC+CGG 0.468113 1.3:+56529535 None:intergenic
GTGGTTGGCGGTGGTGTGGT+TGG 0.473855 1.3:-56529410 MS.gene07612:CDS
GTATGAGAGGCTGCCGGTTG+AGG 0.473968 1.3:-56529330 MS.gene07612:CDS
GGGATGGGACAGTTAGCAAT+TGG 0.474463 1.3:-56529233 MS.gene07612:CDS
GAAGGGCATCAAGGTGGTGG+TGG 0.477044 1.3:-56529293 MS.gene07612:CDS
CCCTCCTAGACCAACCGGTC+CGG 0.477578 1.3:+56529964 None:intergenic
CTGTCGTTAACGTTTCTCTT+CGG 0.480165 1.3:-56529571 MS.gene07612:CDS
GCTTCCTGGACCTTCACCGC+CGG 0.480251 1.3:-56529477 MS.gene07612:CDS
TCCATCCCTCCTAGACCAAC+CGG 0.482993 1.3:+56529959 None:intergenic
GTTTCTCTTCGGCAACCTAC+AGG 0.485903 1.3:-56529560 MS.gene07612:CDS
CTTCCTGGACCTTCACCGCC+GGG 0.487921 1.3:-56529476 MS.gene07612:CDS
TGATCATCACCATCCTCAAC+CGG 0.488150 1.3:+56529317 None:intergenic
ACCTACAGGTCCCGGAGCTA+TGG 0.490105 1.3:-56529546 MS.gene07612:CDS
GTTGCCGCCATCAACATAAC+CGG 0.494758 1.3:+56529368 None:intergenic
CCAGTAGCTCCCGGCGGTGA+AGG 0.497293 1.3:+56529467 None:intergenic
AGGTCCAGGAAGCACTGAAC+CGG 0.501544 1.3:+56529487 None:intergenic
ATGAAGCTTATAATTCTCCC+TGG 0.502086 1.3:-56529112 MS.gene07612:CDS
TTGGTCCACTTGTGGCGGCC+GGG 0.506396 1.3:-56529391 MS.gene07612:CDS
TTCATGGAGAAACCCAGATC+CGG 0.506944 1.3:+56529905 None:intergenic
CAGGAAGGGCATCAAGGTGG+TGG 0.509483 1.3:-56529296 MS.gene07612:CDS
TGAAGCTTATAATTCTCCCT+GGG 0.512515 1.3:-56529111 MS.gene07612:CDS
CCCATCCCCGCGGCACGCGT+CGG 0.513325 1.3:+56529248 None:intergenic
CATGGCTTCGTAGCGCGTTA+GGG 0.516021 1.3:+56529690 None:intergenic
CCCTGGGGTCATGCTAGTCA+TGG 0.516025 1.3:-56529095 MS.gene07612:CDS
GCTCCCGGCGGTGAAGGTCC+AGG 0.516377 1.3:+56529473 None:intergenic
ACCGGCCCGGCCGCCACAAG+TGG 0.517030 1.3:+56529386 None:intergenic
CCACCAACATTGTTATAGCC+TGG 0.521278 1.3:+56529182 None:intergenic
AAACAGGTGGTGGACCGGAC+CGG 0.521308 1.3:-56529978 MS.gene07612:CDS
CTTTGATGGCAAACAGGTGG+TGG 0.523292 1.3:-56529988 None:intergenic
ACCTCCACGCGCCGCCCAAG+AGG 0.524400 1.3:-56529770 MS.gene07612:CDS
GCAATTGGATCTGTTGGAGA+AGG 0.525138 1.3:-56529218 MS.gene07612:CDS
CGAGTCTCCGACGCGTGCCG+CGG 0.526236 1.3:-56529255 MS.gene07612:CDS
TTACTCCTGTTACAGCACTT+TGG 0.526257 1.3:+56529882 None:intergenic
ACCATGACTAGCATGACCCC+AGG 0.526448 1.3:+56529094 None:intergenic
CGCCATCAACATAACCGGCC+CGG 0.529330 1.3:+56529373 None:intergenic
GGTTGAGGATGGTGATGATC+AGG 0.530058 1.3:-56529315 MS.gene07612:CDS
ACGGCCTCTTGGGCGGCGCG+TGG 0.532452 1.3:+56529766 None:intergenic
CATGTCATGGAAGTAGCATC+AGG 0.533990 1.3:-56529671 MS.gene07612:CDS
TTTGATATACTCTCTTTGAC+CGG 0.534621 1.3:-56529506 MS.gene07612:CDS
GCCTCTTGGGCGGCGCGTGG+AGG 0.535225 1.3:+56529769 None:intergenic
CTGATGCTACTTCCATGACA+TGG 0.535449 1.3:+56529672 None:intergenic
CTTCGGCAACCTACAGGTCC+CGG 0.535710 1.3:-56529554 MS.gene07612:CDS
CGCGCTACGAAGCCATGTCA+TGG 0.542213 1.3:-56529684 MS.gene07612:CDS
ACCGGACCGGTTGGTCTAGG+AGG 0.542357 1.3:-56529965 MS.gene07612:CDS
GGAAGCGCCACCATAGCTCC+GGG 0.544398 1.3:+56529536 None:intergenic
TTTCGAATGCGACGTATGAG+AGG 0.546898 1.3:-56529343 MS.gene07612:CDS
TGGTGTGGTTGGTCCACTTG+TGG 0.553800 1.3:-56529399 MS.gene07612:CDS
CCACTAGGAAAACCGGATCT+GGG 0.555591 1.3:-56529917 MS.gene07612:CDS
ATGGCAAACAGGTGGTGGAC+CGG 0.556090 1.3:-56529983 MS.gene07612:CDS
CAAGGACAAGTGGTTGGCGG+TGG 0.556749 1.3:-56529419 MS.gene07612:CDS
ATTTATCTTTCTGGAGGACA+AGG 0.556764 1.3:-56529437 MS.gene07612:CDS
ACCGGTTGGTCTAGGAGGGA+TGG 0.562112 1.3:-56529960 MS.gene07612:CDS
TACAGGTCCCGGAGCTATGG+TGG 0.562505 1.3:-56529543 MS.gene07612:CDS
CCGGACCGGTTGGTCTAGGA+GGG 0.566185 1.3:-56529964 MS.gene07612:CDS
CCAGGCTATAACAATGTTGG+TGG 0.566237 1.3:-56529182 MS.gene07612:CDS
TTGACTATTTATCTTTCTGG+AGG 0.567765 1.3:-56529443 MS.gene07612:CDS
CCACCAGGCTATAACAATGT+TGG 0.572328 1.3:-56529185 MS.gene07612:CDS
GGACAAGGACAAGTGGTTGG+CGG 0.574410 1.3:-56529422 MS.gene07612:CDS
AATTTGGGTGTTTCAAATGG+AGG 0.577814 1.3:-56529158 MS.gene07612:CDS
AGCGACGAACACAAAGGAGG+TGG 0.581244 1.3:-56529806 MS.gene07612:CDS
ACAAGTGGTTGGCGGTGGTG+TGG 0.585162 1.3:-56529414 MS.gene07612:CDS
GATGATCAGGAAGGGCATCA+AGG 0.592117 1.3:-56529302 MS.gene07612:CDS
TCAGTAACCTCCTCTCCACT+AGG 0.593822 1.3:-56529932 MS.gene07612:CDS
ATAGTCAAACCAGTAGCTCC+CGG 0.594640 1.3:+56529458 None:intergenic
GGAGGACAAGGACAAGTGGT+TGG 0.595598 1.3:-56529425 MS.gene07612:CDS
AATTAGTATACTTAGTATGG+TGG 0.597096 1.3:+56529068 None:intergenic
ATTTGCATTCTAAGCGCAAG+TGG 0.597435 1.3:-56529596 MS.gene07612:CDS
CTGATGGACGGCCTCTTGGG+CGG 0.597863 1.3:+56529759 None:intergenic
GAGAGGCTGCCGGTTGAGGA+TGG 0.598538 1.3:-56529326 MS.gene07612:CDS
TCTCTTGTTATGAATATCGG+TGG 0.603718 1.3:+56529716 None:intergenic
TTCTGGAGGACAAGGACAAG+TGG 0.603921 1.3:-56529429 MS.gene07612:CDS
ACCATAGCTCCGGGACCTGT+AGG 0.618743 1.3:+56529545 None:intergenic
AGGTGGTGGACCGGACCGGT+TGG 0.621643 1.3:-56529974 MS.gene07612:CDS
GAGAGTATATCAAATCTCCC+AGG 0.628363 1.3:+56529515 None:intergenic
TGTGGTTGGTCCACTTGTGG+CGG 0.637462 1.3:-56529396 MS.gene07612:CDS
GAAGGTTCTTCAATTCCACC+AGG 0.641251 1.3:-56529200 MS.gene07612:CDS
GAGGATGGTGATGATCAGGA+AGG 0.642087 1.3:-56529311 MS.gene07612:CDS
GAAAACAGCGACGAACACAA+AGG 0.642908 1.3:-56529812 MS.gene07612:CDS
AGGATGGTGATGATCAGGAA+GGG 0.650071 1.3:-56529310 MS.gene07612:CDS
AGTCTCCGACGCGTGCCGCG+GGG 0.661832 1.3:-56529253 MS.gene07612:CDS
AACAGCGACGAACACAAAGG+AGG 0.671516 1.3:-56529809 MS.gene07612:CDS
CAACTTTGATGGCAAACAGG+TGG 0.677591 1.3:-56529991 None:intergenic
CGGGCCGGTTATGTTGATGG+CGG 0.680553 1.3:-56529372 MS.gene07612:CDS
TGCGACGTATGAGAGGCTGC+CGG 0.686290 1.3:-56529336 MS.gene07612:CDS
CCAACATTGTTATAGCCTGG+TGG 0.688924 1.3:+56529185 None:intergenic
CCATGACTAGCATGACCCCA+GGG 0.694474 1.3:+56529095 None:intergenic
TGCTAACTGTCCCATCCCCG+CGG 0.697320 1.3:+56529238 None:intergenic
GATCAGGAAGGGCATCAAGG+TGG 0.707265 1.3:-56529299 MS.gene07612:CDS
TTTGCAAGAAAACGACAGAG+AGG 0.730654 1.3:-56529620 MS.gene07612:CDS
GAAGCTTATAATTCTCCCTG+GGG 0.741712 1.3:-56529110 MS.gene07612:CDS
GTCAAACCAGTAGCTCCCGG+CGG 0.770924 1.3:+56529461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATCTCTTGTTATGAATAT+CGG + chr1.3:56529352-56529371 None:intergenic 25.0%
GGTTTGACTATTTATCTTTC+TGG - chr1.3:56529616-56529635 MS.gene07612:CDS 30.0%
TTGACTATTTATCTTTCTGG+AGG - chr1.3:56529619-56529638 MS.gene07612:CDS 30.0%
TTTGATATACTCTCTTTGAC+CGG - chr1.3:56529556-56529575 MS.gene07612:CDS 30.0%
!! AACAATGTTGGTGGTAATTT+GGG - chr1.3:56529889-56529908 MS.gene07612:CDS 30.0%
!! TAACAATGTTGGTGGTAATT+TGG - chr1.3:56529888-56529907 MS.gene07612:CDS 30.0%
AATTTGGGTGTTTCAAATGG+AGG - chr1.3:56529904-56529923 MS.gene07612:CDS 35.0%
ATGAAGCTTATAATTCTCCC+TGG - chr1.3:56529950-56529969 MS.gene07612:CDS 35.0%
GGTAATTTGGGTGTTTCAAA+TGG - chr1.3:56529901-56529920 MS.gene07612:CDS 35.0%
TGAAGCTTATAATTCTCCCT+GGG - chr1.3:56529951-56529970 MS.gene07612:CDS 35.0%
! ATTTATCTTTCTGGAGGACA+AGG - chr1.3:56529625-56529644 MS.gene07612:CDS 35.0%
! GTTATGAATATCGGTGGTTT+TGG + chr1.3:56529343-56529362 None:intergenic 35.0%
! TCTCTTGTTATGAATATCGG+TGG + chr1.3:56529349-56529368 None:intergenic 35.0%
!!! GGTTTGTTTTTTGAACCTGA+TGG + chr1.3:56529322-56529341 None:intergenic 35.0%
!!! TGTTTTTTGAACCTGATGGA+CGG + chr1.3:56529318-56529337 None:intergenic 35.0%
ATTTGCATTCTAAGCGCAAG+TGG - chr1.3:56529466-56529485 MS.gene07612:CDS 40.0%
CAGTTAGCAATTGGATCTGT+TGG - chr1.3:56529838-56529857 MS.gene07612:CDS 40.0%
CTGTCGTTAACGTTTCTCTT+CGG - chr1.3:56529491-56529510 MS.gene07612:CDS 40.0%
GAAGCTTATAATTCTCCCTG+GGG - chr1.3:56529952-56529971 MS.gene07612:CDS 40.0%
TTACTCCTGTTACAGCACTT+TGG + chr1.3:56529183-56529202 None:intergenic 40.0%
TTTGCAAGAAAACGACAGAG+AGG - chr1.3:56529442-56529461 MS.gene07612:CDS 40.0%
! GAGAGTATATCAAATCTCCC+AGG + chr1.3:56529550-56529569 None:intergenic 40.0%
! TGTTACAGCACTTTGGTTCA+TGG + chr1.3:56529176-56529195 None:intergenic 40.0%
!! ATGAACCAAAGTGCTGTAAC+AGG - chr1.3:56529175-56529194 MS.gene07612:CDS 40.0%
ATAGTCAAACCAGTAGCTCC+CGG + chr1.3:56529607-56529626 None:intergenic 45.0%
CATGTCATGGAAGTAGCATC+AGG - chr1.3:56529391-56529410 MS.gene07612:CDS 45.0%
CCAACATTGTTATAGCCTGG+TGG + chr1.3:56529880-56529899 None:intergenic 45.0%
CCACCAACATTGTTATAGCC+TGG + chr1.3:56529883-56529902 None:intergenic 45.0%
CCACCAGGCTATAACAATGT+TGG - chr1.3:56529877-56529896 MS.gene07612:CDS 45.0%
CCAGGCTATAACAATGTTGG+TGG - chr1.3:56529880-56529899 MS.gene07612:CDS 45.0%
GAAAACAGCGACGAACACAA+AGG - chr1.3:56529250-56529269 MS.gene07612:CDS 45.0%
GAAGGTTCTTCAATTCCACC+AGG - chr1.3:56529862-56529881 MS.gene07612:CDS 45.0%
GCAATTGGATCTGTTGGAGA+AGG - chr1.3:56529844-56529863 MS.gene07612:CDS 45.0%
TGATCATCACCATCCTCAAC+CGG + chr1.3:56529748-56529767 None:intergenic 45.0%
TTCATGGAGAAACCCAGATC+CGG + chr1.3:56529160-56529179 None:intergenic 45.0%
TTTCGAATGCGACGTATGAG+AGG - chr1.3:56529719-56529738 MS.gene07612:CDS 45.0%
! AGGATGGTGATGATCAGGAA+GGG - chr1.3:56529752-56529771 MS.gene07612:CDS 45.0%
! CTGATGCTACTTCCATGACA+TGG + chr1.3:56529393-56529412 None:intergenic 45.0%
AACAGCGACGAACACAAAGG+AGG - chr1.3:56529253-56529272 MS.gene07612:CDS 50.0%
CCACTAGGAAAACCGGATCT+GGG - chr1.3:56529145-56529164 MS.gene07612:CDS 50.0%
CTCCTCTCCACTAGGAAAAC+CGG - chr1.3:56529138-56529157 MS.gene07612:CDS 50.0%
GGGATGGGACAGTTAGCAAT+TGG - chr1.3:56529829-56529848 MS.gene07612:CDS 50.0%
GTTGCCGCCATCAACATAAC+CGG + chr1.3:56529697-56529716 None:intergenic 50.0%
GTTTCTCTTCGGCAACCTAC+AGG - chr1.3:56529502-56529521 MS.gene07612:CDS 50.0%
TCAGTAACCTCCTCTCCACT+AGG - chr1.3:56529130-56529149 MS.gene07612:CDS 50.0%
TCCACTAGGAAAACCGGATC+TGG - chr1.3:56529144-56529163 MS.gene07612:CDS 50.0%
! ATCCGGTTTTCCTAGTGGAG+AGG + chr1.3:56529143-56529162 None:intergenic 50.0%
! GAGGATGGTGATGATCAGGA+AGG - chr1.3:56529751-56529770 MS.gene07612:CDS 50.0%
! GGTTGAGGATGGTGATGATC+AGG - chr1.3:56529747-56529766 MS.gene07612:CDS 50.0%
! TTCTGGAGGACAAGGACAAG+TGG - chr1.3:56529633-56529652 MS.gene07612:CDS 50.0%
!! GATGATCAGGAAGGGCATCA+AGG - chr1.3:56529760-56529779 MS.gene07612:CDS 50.0%
ACATGGCTTCGTAGCGCGTT+AGG + chr1.3:56529376-56529395 None:intergenic 55.0%
ACCATGACTAGCATGACCCC+AGG + chr1.3:56529971-56529990 None:intergenic 55.0%
AGCGACGAACACAAAGGAGG+TGG - chr1.3:56529256-56529275 MS.gene07612:CDS 55.0%
CATGGCTTCGTAGCGCGTTA+GGG + chr1.3:56529375-56529394 None:intergenic 55.0%
CCATGACTAGCATGACCCCA+GGG + chr1.3:56529970-56529989 None:intergenic 55.0%
GGACAAGGACAAGTGGTTGG+CGG - chr1.3:56529640-56529659 MS.gene07612:CDS 55.0%
GGAGGACAAGGACAAGTGGT+TGG - chr1.3:56529637-56529656 MS.gene07612:CDS 55.0%
TCCATCCCTCCTAGACCAAC+CGG + chr1.3:56529106-56529125 None:intergenic 55.0%
! AACCTGATGGACGGCCTCTT+GGG + chr1.3:56529309-56529328 None:intergenic 55.0%
! CCCAGATCCGGTTTTCCTAG+TGG + chr1.3:56529148-56529167 None:intergenic 55.0%
! CGGTTTTCCTAGTGGAGAGG+AGG + chr1.3:56529140-56529159 None:intergenic 55.0%
! TGGTGTGGTTGGTCCACTTG+TGG - chr1.3:56529663-56529682 MS.gene07612:CDS 55.0%
! TGTGGTTGGTCCACTTGTGG+CGG - chr1.3:56529666-56529685 MS.gene07612:CDS 55.0%
! TTGACCGGTTCAGTGCTTCC+TGG - chr1.3:56529571-56529590 MS.gene07612:CDS 55.0%
!! AGGTCCAGGAAGCACTGAAC+CGG + chr1.3:56529578-56529597 None:intergenic 55.0%
!! ATGGCAAACAGGTGGTGGAC+CGG - chr1.3:56529079-56529098 MS.gene07612:CDS 55.0%
!! GATCAGGAAGGGCATCAAGG+TGG - chr1.3:56529763-56529782 MS.gene07612:CDS 55.0%
ACAAGTGGTTGGCGGTGGTG+TGG - chr1.3:56529648-56529667 MS.gene07612:CDS 60.0%
ACCATAGCTCCGGGACCTGT+AGG + chr1.3:56529520-56529539 None:intergenic 60.0%
ACCTACAGGTCCCGGAGCTA+TGG - chr1.3:56529516-56529535 MS.gene07612:CDS 60.0%
CAAGGACAAGTGGTTGGCGG+TGG - chr1.3:56529643-56529662 MS.gene07612:CDS 60.0%
CCCTGGGGTCATGCTAGTCA+TGG - chr1.3:56529967-56529986 MS.gene07612:CDS 60.0%
CGCCATCAACATAACCGGCC+CGG + chr1.3:56529692-56529711 None:intergenic 60.0%
CGCGCTACGAAGCCATGTCA+TGG - chr1.3:56529378-56529397 MS.gene07612:CDS 60.0%
CTTCGGCAACCTACAGGTCC+CGG - chr1.3:56529508-56529527 MS.gene07612:CDS 60.0%
GTCAAACCAGTAGCTCCCGG+CGG + chr1.3:56529604-56529623 None:intergenic 60.0%
TACAGGTCCCGGAGCTATGG+TGG - chr1.3:56529519-56529538 MS.gene07612:CDS 60.0%
TGCGACGTATGAGAGGCTGC+CGG - chr1.3:56529726-56529745 MS.gene07612:CDS 60.0%
TGCTAACTGTCCCATCCCCG+CGG + chr1.3:56529827-56529846 None:intergenic 60.0%
! CGGGCCGGTTATGTTGATGG+CGG - chr1.3:56529690-56529709 MS.gene07612:CDS 60.0%
! GAACCTGATGGACGGCCTCT+TGG + chr1.3:56529310-56529329 None:intergenic 60.0%
! GAGCTATGGTGGCGCTTCCT+GGG - chr1.3:56529530-56529549 MS.gene07612:CDS 60.0%
! GTATGAGAGGCTGCCGGTTG+AGG - chr1.3:56529732-56529751 MS.gene07612:CDS 60.0%
!! AAACAGGTGGTGGACCGGAC+CGG - chr1.3:56529084-56529103 MS.gene07612:CDS 60.0%
!! ACCGGTTGGTCTAGGAGGGA+TGG - chr1.3:56529102-56529121 MS.gene07612:CDS 60.0%
!! AGGAAGCGCCACCATAGCTC+CGG + chr1.3:56529530-56529549 None:intergenic 60.0%
!! CAGGAAGGGCATCAAGGTGG+TGG - chr1.3:56529766-56529785 MS.gene07612:CDS 60.0%
!! CATCAAGGTGGTGGTGGTGG+TGG - chr1.3:56529775-56529794 MS.gene07612:CDS 60.0%
!! GAAGGGCATCAAGGTGGTGG+TGG - chr1.3:56529769-56529788 MS.gene07612:CDS 60.0%
CCCTCCTAGACCAACCGGTC+CGG + chr1.3:56529101-56529120 None:intergenic 65.0%
CTTCCTGGACCTTCACCGCC+GGG - chr1.3:56529586-56529605 MS.gene07612:CDS 65.0%
GCTTCCTGGACCTTCACCGC+CGG - chr1.3:56529585-56529604 MS.gene07612:CDS 65.0%
GGCCGGGCCGGTTATGTTGA+TGG - chr1.3:56529687-56529706 MS.gene07612:CDS 65.0%
GTGGTTGGCGGTGGTGTGGT+TGG - chr1.3:56529652-56529671 MS.gene07612:CDS 65.0%
GTTGGTCCACTTGTGGCGGC+CGG - chr1.3:56529670-56529689 MS.gene07612:CDS 65.0%
TTGGTCCACTTGTGGCGGCC+GGG - chr1.3:56529671-56529690 MS.gene07612:CDS 65.0%
! CTGATGGACGGCCTCTTGGG+CGG + chr1.3:56529306-56529325 None:intergenic 65.0%
! GAGAGGCTGCCGGTTGAGGA+TGG - chr1.3:56529736-56529755 MS.gene07612:CDS 65.0%
! GGAGCTATGGTGGCGCTTCC+TGG - chr1.3:56529529-56529548 MS.gene07612:CDS 65.0%
!! ACCGGACCGGTTGGTCTAGG+AGG - chr1.3:56529097-56529116 MS.gene07612:CDS 65.0%
!! CAAGGTGGTGGTGGTGGTGG+TGG - chr1.3:56529778-56529797 MS.gene07612:CDS 65.0%
!! CCGGACCGGTTGGTCTAGGA+GGG - chr1.3:56529098-56529117 MS.gene07612:CDS 65.0%
!! GGAAGCGCCACCATAGCTCC+GGG + chr1.3:56529529-56529548 None:intergenic 65.0%
!! GGGCATCAAGGTGGTGGTGG+TGG - chr1.3:56529772-56529791 MS.gene07612:CDS 65.0%
!! TGGACCGGACCGGTTGGTCT+AGG - chr1.3:56529094-56529113 MS.gene07612:CDS 65.0%
CCAGTAGCTCCCGGCGGTGA+AGG + chr1.3:56529598-56529617 None:intergenic 70.0%
CCTTCACCGCCGGGAGCTAC+TGG - chr1.3:56529595-56529614 MS.gene07612:CDS 70.0%
CGCCCAAGAGGCCGTCCATC+AGG - chr1.3:56529304-56529323 MS.gene07612:CDS 70.0%
!! AGGTGGTGGACCGGACCGGT+TGG - chr1.3:56529088-56529107 MS.gene07612:CDS 70.0%
ACCTCCACGCGCCGCCCAAG+AGG - chr1.3:56529292-56529311 MS.gene07612:CDS 75.0%
AGTCTCCGACGCGTGCCGCG+GGG - chr1.3:56529809-56529828 MS.gene07612:CDS 75.0%
CGAGTCTCCGACGCGTGCCG+CGG - chr1.3:56529807-56529826 MS.gene07612:CDS 75.0%
GAGTCTCCGACGCGTGCCGC+GGG - chr1.3:56529808-56529827 MS.gene07612:CDS 75.0%
GCTCCCGGCGGTGAAGGTCC+AGG + chr1.3:56529592-56529611 None:intergenic 75.0%
TCCACTTGTGGCGGCCGGGC+CGG - chr1.3:56529675-56529694 MS.gene07612:CDS 75.0%
! ACCGGCCCGGCCGCCACAAG+TGG + chr1.3:56529679-56529698 None:intergenic 80.0%
! ACGGCCTCTTGGGCGGCGCG+TGG + chr1.3:56529299-56529318 None:intergenic 80.0%
! CCCATCCCCGCGGCACGCGT+CGG + chr1.3:56529817-56529836 None:intergenic 80.0%
! CCGACGCGTGCCGCGGGGAT+GGG - chr1.3:56529814-56529833 MS.gene07612:CDS 80.0%
! GCCTCTTGGGCGGCGCGTGG+AGG + chr1.3:56529296-56529315 None:intergenic 80.0%
! TCCGACGCGTGCCGCGGGGA+TGG - chr1.3:56529813-56529832 MS.gene07612:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56529079 56530005 56529079 ID=MS.gene07612
chr1.3 mRNA 56529079 56530005 56529079 ID=MS.gene07612.t1;Parent=MS.gene07612
chr1.3 exon 56529079 56530005 56529079 ID=MS.gene07612.t1.exon1;Parent=MS.gene07612.t1
chr1.3 CDS 56529079 56530005 56529079 ID=cds.MS.gene07612.t1;Parent=MS.gene07612.t1
Gene Sequence

>MS.gene07612

ATGGCAAACAGGTGGTGGACCGGACCGGTTGGTCTAGGAGGGATGGACAACTCAGTAACCTCCTCTCCACTAGGAAAACCGGATCTGGGTTTCTCCATGAACCAAAGTGCTGTAACAGGAGTAAACAACATGAACAACAACAACAACAATGAAGAAGAAGAAGATGAGAAAGAAAACAGCGACGAACACAAAGGAGGTGGAATAGAAACAAACACCTCCACGCGCCGCCCAAGAGGCCGTCCATCAGGTTCAAAAAACAAACCAAAACCACCGATATTCATAACAAGAGATAGCCCTAACGCGCTACGAAGCCATGTCATGGAAGTAGCATCAGGAACTGATATATCAGATAGCATCGTTCAGTTTGCAAGAAAACGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACTGTCGTTAACGTTTCTCTTCGGCAACCTACAGGTCCCGGAGCTATGGTGGCGCTTCCTGGGAGATTTGATATACTCTCTTTGACCGGTTCAGTGCTTCCTGGACCTTCACCGCCGGGAGCTACTGGTTTGACTATTTATCTTTCTGGAGGACAAGGACAAGTGGTTGGCGGTGGTGTGGTTGGTCCACTTGTGGCGGCCGGGCCGGTTATGTTGATGGCGGCAACATTTTCGAATGCGACGTATGAGAGGCTGCCGGTTGAGGATGGTGATGATCAGGAAGGGCATCAAGGTGGTGGTGGTGGTGGTGGTGACGACGAGTCTCCGACGCGTGCCGCGGGGATGGGACAGTTAGCAATTGGATCTGTTGGAGAAGGTTCTTCAATTCCACCAGGCTATAACAATGTTGGTGGTAATTTGGGTGTTTCAAATGGAGGACAACAACAATTGTTGAATAATCATGAAGCTTATAATTCTCCCTGGGGTCATGCTAGTCATGGTAGACCACCATACTAA

Protein sequence

>MS.gene07612.t1

MANRWWTGPVGLGGMDNSVTSSPLGKPDLGFSMNQSAVTGVNNMNNNNNNEEEEDEKENSDEHKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVASGTDISDSIVQFARKRQRGICILSASGTVVNVSLRQPTGPGAMVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEGHQGGGGGGGDDESPTRAAGMGQLAIGSVGEGSSIPPGYNNVGGNLGVSNGGQQQLLNNHEAYNSPWGHASHGRPPY