Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25515.t1 | XP_013445680.1 | 96.7 | 338 | 11 | 0 | 87 | 424 | 79 | 416 | 2.00E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25515.t1 | E9Q349 | 38.9 | 316 | 182 | 5 | 114 | 423 | 224 | 534 | 2.1e-65 | 251.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25515.t1 | A0A072TR58 | 96.7 | 338 | 11 | 0 | 87 | 424 | 79 | 416 | 1.5e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25515.t1 | MTR_8g467040 | 96.746 | 338 | 11 | 0 | 87 | 424 | 79 | 416 | 0.0 | 685 |
| MS.gene25515.t1 | MTR_4g102520 | 33.226 | 310 | 193 | 4 | 115 | 420 | 282 | 581 | 5.73e-51 | 181 |
| MS.gene25515.t1 | MTR_1g072740 | 32.881 | 295 | 176 | 6 | 115 | 398 | 281 | 564 | 7.17e-40 | 150 |
| MS.gene25515.t1 | MTR_7g086360 | 26.409 | 337 | 225 | 11 | 94 | 424 | 25 | 344 | 7.37e-24 | 102 |
| MS.gene25515.t1 | MTR_1g072140 | 26.367 | 311 | 200 | 11 | 116 | 418 | 16 | 305 | 3.86e-23 | 99.4 |
| MS.gene25515.t1 | MTR_4g119620 | 26.282 | 312 | 204 | 10 | 113 | 413 | 13 | 309 | 1.84e-20 | 92.0 |
| MS.gene25515.t1 | MTR_3g449990 | 24.375 | 320 | 221 | 11 | 109 | 423 | 252 | 555 | 7.69e-14 | 73.9 |
| MS.gene25515.t1 | MTR_8g092620 | 22.667 | 300 | 186 | 10 | 162 | 424 | 8 | 298 | 2.31e-13 | 70.9 |
| MS.gene25515.t1 | MTR_8g092620 | 22.635 | 296 | 183 | 10 | 162 | 420 | 15 | 301 | 1.20e-12 | 68.9 |
| MS.gene25515.t1 | MTR_1g069345 | 23.214 | 336 | 228 | 11 | 97 | 423 | 189 | 503 | 1.54e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25515.t1 | AT5G54520 | 66.272 | 338 | 114 | 0 | 87 | 424 | 120 | 457 | 5.38e-178 | 504 |
| MS.gene25515.t1 | AT1G10580 | 33.746 | 323 | 200 | 4 | 106 | 424 | 261 | 573 | 4.39e-55 | 192 |
| MS.gene25515.t1 | AT4G02730 | 26.384 | 307 | 197 | 10 | 116 | 413 | 32 | 318 | 9.05e-25 | 104 |
| MS.gene25515.t1 | AT2G43770 | 26.144 | 306 | 210 | 8 | 123 | 424 | 49 | 342 | 2.04e-22 | 98.2 |
| MS.gene25515.t1 | AT3G49660 | 26.032 | 315 | 203 | 10 | 120 | 423 | 17 | 312 | 8.22e-22 | 95.9 |
| MS.gene25515.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 121 | 305 | 254 | 436 | 5.67e-12 | 68.2 |
| MS.gene25515.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 121 | 305 | 231 | 413 | 6.77e-12 | 67.8 |
| MS.gene25515.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 121 | 305 | 231 | 413 | 6.81e-12 | 67.8 |
| MS.gene25515.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 121 | 305 | 243 | 425 | 7.14e-12 | 67.8 |
| MS.gene25515.t1 | AT5G64730 | 22.830 | 311 | 221 | 9 | 115 | 424 | 6 | 298 | 7.54e-12 | 66.2 |
| MS.gene25515.t1 | AT4G28450 | 22.263 | 274 | 186 | 9 | 121 | 382 | 60 | 318 | 2.22e-11 | 65.9 |
| MS.gene25515.t1 | AT5G43920 | 21.136 | 317 | 231 | 8 | 113 | 423 | 210 | 513 | 2.32e-11 | 65.9 |
Find 107 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTGAAATTGCACTTAAT+TGG | 0.089098 | 8.2:-42334383 | None:intergenic |
| TATGAGAACCATGGGGTTTC+TGG | 0.132809 | 8.2:+42334356 | MS.gene25515:CDS |
| AATTCAAGTCTCTTTCTTTC+TGG | 0.210960 | 8.2:+42329164 | MS.gene25515:CDS |
| CTCATGGGATGGAAGTATTT+TGG | 0.214310 | 8.2:+42334559 | MS.gene25515:CDS |
| GTCCATGCATGCTTGGTTAA+AGG | 0.247778 | 8.2:-42334495 | None:intergenic |
| GCAATAACATTAGGCAAAAC+TGG | 0.260777 | 8.2:-42334530 | None:intergenic |
| AAGTGCAATTTCAGCTTAGA+TGG | 0.263435 | 8.2:+42334389 | MS.gene25515:CDS |
| GCTCACCTCCTTGCATCTGC+TGG | 0.268487 | 8.2:+42328909 | MS.gene25515:intron |
| TCAACAATGCTACAATGTTA+TGG | 0.295169 | 8.2:-42328498 | None:intergenic |
| CATAACTATAATCGAAGTTT+AGG | 0.313370 | 8.2:+42329239 | MS.gene25515:CDS |
| CAACAATGCTACAATGTTAT+GGG | 0.316478 | 8.2:-42328497 | None:intergenic |
| ATGTCTTCAAGTGATGTATC+TGG | 0.329819 | 8.2:+42329305 | MS.gene25515:CDS |
| GTGAGAATTCTATTATCGTT+TGG | 0.344806 | 8.2:+42329339 | MS.gene25515:CDS |
| AGCTGAAATTGCACTTAATT+GGG | 0.350793 | 8.2:-42334382 | None:intergenic |
| TGAGAATTCTATTATCGTTT+GGG | 0.353439 | 8.2:+42329340 | MS.gene25515:CDS |
| ATTCAAGTCTCTTTCTTTCT+GGG | 0.354972 | 8.2:+42329165 | MS.gene25515:CDS |
| GCTTGTCAGGTACCGAGTTC+AGG | 0.356109 | 8.2:-42328546 | None:intergenic |
| GATGTCGAGTTTACAACAAA+TGG | 0.364650 | 8.2:+42329272 | MS.gene25515:CDS |
| TTATATTTGTTGAGTCTGTA+TGG | 0.367208 | 8.2:-42334329 | None:intergenic |
| TTCAAAGAAGATCAAATTGT+TGG | 0.374362 | 8.2:+42329119 | MS.gene25515:CDS |
| AAGCTATCTGCAACTCTGTC+TGG | 0.412532 | 8.2:+42328565 | MS.gene25515:CDS |
| ATGTTATTGCTTCATGCTCA+TGG | 0.419798 | 8.2:+42334543 | MS.gene25515:CDS |
| AGAAAGAGACTTGAATTGTC+TGG | 0.420157 | 8.2:-42329158 | None:intergenic |
| CCTCCTTGCATCTGCTGGGA+TGG | 0.421099 | 8.2:+42328914 | MS.gene25515:CDS |
| ATGAGAACCATGGGGTTTCT+GGG | 0.423886 | 8.2:+42334357 | MS.gene25515:CDS |
| GAGCATGAAGCAATAACATT+AGG | 0.424741 | 8.2:-42334539 | None:intergenic |
| TGATATCCCATAGCTTGATA+TGG | 0.425356 | 8.2:-42329199 | None:intergenic |
| ACAGGTACCATTGTCTAATC+AGG | 0.425682 | 8.2:+42329373 | MS.gene25515:CDS |
| TGGATGACTGATAATCATAA+AGG | 0.429834 | 8.2:-42334451 | None:intergenic |
| AGGTTGGTTGATGTTGAAAA+GGG | 0.433049 | 8.2:+42329080 | MS.gene25515:CDS |
| TAGAGATAGGTTCAACGATC+AGG | 0.434580 | 8.2:+42327098 | MS.gene25515:CDS |
| AAGGTTGGTTGATGTTGAAA+AGG | 0.438941 | 8.2:+42329079 | MS.gene25515:CDS |
| ACTGCACAGGAACACCGCCC+CGG | 0.442783 | 8.2:-42327127 | None:intergenic |
| ATCTGGTGTTCGTCGACTGT+GGG | 0.447510 | 8.2:+42326917 | MS.gene25515:CDS |
| CTCACCTCCTTGCATCTGCT+GGG | 0.448124 | 8.2:+42328910 | MS.gene25515:CDS |
| AGAGTTGCAGATAGCTTGTC+AGG | 0.454221 | 8.2:-42328559 | None:intergenic |
| TGAAATCCAGCGACGGATGC+GGG | 0.456373 | 8.2:+42327072 | MS.gene25515:CDS |
| GATGGGAAGAAGCTTGCATC+TGG | 0.466105 | 8.2:+42334407 | MS.gene25515:CDS |
| AAGCTATGGGATATCAGAAC+TGG | 0.476171 | 8.2:+42329206 | MS.gene25515:CDS |
| CTAACTCCCGCATCCGTCGC+TGG | 0.476877 | 8.2:-42327078 | None:intergenic |
| GCTTCTGAATCAGGTTTATG+TGG | 0.478796 | 8.2:+42334208 | MS.gene25515:intron |
| GGGCACTTCTTGCTTTCTTG+TGG | 0.484923 | 8.2:+42329041 | MS.gene25515:CDS |
| CTTGCATCTGGCTCTTCAGA+TGG | 0.486666 | 8.2:+42334419 | MS.gene25515:CDS |
| TTCAAGTCTCTTTCTTTCTG+GGG | 0.490030 | 8.2:+42329166 | MS.gene25515:CDS |
| AATCCAATACACCGCGGTTG+TGG | 0.497945 | 8.2:-42327159 | None:intergenic |
| TCAAGTCTCTTTCTTTCTGG+GGG | 0.500922 | 8.2:+42329167 | MS.gene25515:CDS |
| CAAAGGGCCATATCAAGCTA+TGG | 0.503725 | 8.2:+42329192 | MS.gene25515:CDS |
| CGTCTTTACTAATGACGATC+TGG | 0.505308 | 8.2:+42326900 | None:intergenic |
| CGGATGCGGGAGTTAGAGAT+AGG | 0.506506 | 8.2:+42327085 | MS.gene25515:CDS |
| ATGTCGAGTTTACAACAAAT+GGG | 0.515879 | 8.2:+42329273 | MS.gene25515:CDS |
| GGCCTTTAACCAAGCATGCA+TGG | 0.516184 | 8.2:+42334493 | MS.gene25515:CDS |
| CTGAAATCCAGCGACGGATG+CGG | 0.530492 | 8.2:+42327071 | MS.gene25515:CDS |
| ATAAGAGATATGAGAACCAT+GGG | 0.533569 | 8.2:+42334348 | MS.gene25515:CDS |
| CATCTTTCACTGCTGCATTG+TGG | 0.536720 | 8.2:-42329001 | None:intergenic |
| CATAAATATAGGTAGTATCT+CGG | 0.537273 | 8.2:+42328462 | MS.gene25515:intron |
| TGTTATTGCTTCATGCTCAT+GGG | 0.537623 | 8.2:+42334544 | MS.gene25515:CDS |
| CGTTTGGGATGTGTCAAGAC+AGG | 0.538329 | 8.2:+42329355 | MS.gene25515:CDS |
| CTGCACAGGAACACCGCCCC+GGG | 0.540039 | 8.2:-42327126 | None:intergenic |
| CAGCAGTGAAAGATGTGAAA+TGG | 0.541653 | 8.2:+42329009 | MS.gene25515:CDS |
| ATTTGTTGAGTCTGTATGGT+GGG | 0.541991 | 8.2:-42334325 | None:intergenic |
| GTTGAGTCTGTATGGTGGGT+AGG | 0.542763 | 8.2:-42334321 | None:intergenic |
| TCAACGATCAGGATCTGCCC+GGG | 0.542837 | 8.2:+42327109 | MS.gene25515:CDS |
| GCGGTGTTCCTGTGCAGTAG+AGG | 0.548971 | 8.2:+42327132 | MS.gene25515:CDS |
| TGTCTTCAAGTGATGTATCT+GGG | 0.549234 | 8.2:+42329306 | MS.gene25515:CDS |
| ATTGTTGAAAAGTAAAGCAA+AGG | 0.551190 | 8.2:+42328513 | MS.gene25515:CDS |
| ATTAGGCAAAACTGGGTGGA+AGG | 0.557065 | 8.2:-42334522 | None:intergenic |
| AGTGCAATTTCAGCTTAGAT+GGG | 0.561560 | 8.2:+42334390 | MS.gene25515:CDS |
| TTGTTGAAAAGTAAAGCAAA+GGG | 0.562663 | 8.2:+42328514 | MS.gene25515:CDS |
| CAATACACCGCGGTTGTGGA+AGG | 0.562838 | 8.2:-42327155 | None:intergenic |
| TTCAACGATCAGGATCTGCC+CGG | 0.564348 | 8.2:+42327108 | MS.gene25515:CDS |
| AAAGGGCCATATCAAGCTAT+GGG | 0.566987 | 8.2:+42329193 | MS.gene25515:CDS |
| GTGGAAGGCCTCTACTGCAC+AGG | 0.569621 | 8.2:-42327140 | None:intergenic |
| GGTTGATGTTGAAAAGGGGA+TGG | 0.571477 | 8.2:+42329085 | MS.gene25515:CDS |
| AGAGACTTGAATTGTCTGGA+TGG | 0.583021 | 8.2:-42329154 | None:intergenic |
| ATACATTGGTCATCAACTCA+TGG | 0.592308 | 8.2:+42328610 | MS.gene25515:CDS |
| TATAAGAGATATGAGAACCA+TGG | 0.593911 | 8.2:+42334347 | MS.gene25515:CDS |
| GTGGATATGATTGCACATCA+AGG | 0.600456 | 8.2:+42329060 | MS.gene25515:CDS |
| CAATAACATTAGGCAAAACT+GGG | 0.602442 | 8.2:-42334529 | None:intergenic |
| TGTCCATCCCAGCAGATGCA+AGG | 0.605709 | 8.2:-42328917 | None:intergenic |
| AGGCAATGTCCATGCATGCT+TGG | 0.606698 | 8.2:-42334502 | None:intergenic |
| TCACATACTATGTTGAGCAT+CGG | 0.607175 | 8.2:-42326968 | None:intergenic |
| AACAATGCTACAATGTTATG+GGG | 0.613093 | 8.2:-42328496 | None:intergenic |
| GATCTGGTGTTCGTCGACTG+TGG | 0.613772 | 8.2:+42326916 | MS.gene25515:CDS |
| GAGCTGTCAATGCTATACAT+TGG | 0.614108 | 8.2:+42328596 | MS.gene25515:CDS |
| ATTGCTTCATGCTCATGGGA+TGG | 0.618591 | 8.2:+42334548 | MS.gene25515:CDS |
| TATTTGTTGAGTCTGTATGG+TGG | 0.619013 | 8.2:-42334326 | None:intergenic |
| AAGGGGTGAATTCTAATGCA+AGG | 0.619618 | 8.2:-42334245 | None:intergenic |
| ATATGATTGCACATCAAGGT+TGG | 0.628197 | 8.2:+42329064 | MS.gene25515:CDS |
| AGAAAATGCGTGAAGTGGCG+TGG | 0.636640 | 8.2:+42327011 | MS.gene25515:CDS |
| TTGGGAACCCAGAAACCCCA+TGG | 0.636691 | 8.2:-42334364 | None:intergenic |
| ATCTGCTGGGATGGACAATG+TGG | 0.644625 | 8.2:+42328923 | MS.gene25515:CDS |
| GTGTGAGAAAATGCGTGAAG+TGG | 0.644657 | 8.2:+42327006 | MS.gene25515:CDS |
| CTGCTTCTGAAATCCAGCGA+CGG | 0.645684 | 8.2:+42327065 | MS.gene25515:CDS |
| GATGTGAAATGGTCTCAACA+AGG | 0.649349 | 8.2:+42329020 | MS.gene25515:CDS |
| TACTATGTTGAGCATCGGAG+TGG | 0.658448 | 8.2:-42326963 | None:intergenic |
| TAACATTAGGCAAAACTGGG+TGG | 0.660319 | 8.2:-42334526 | None:intergenic |
| ATGTGAAATGGTCTCAACAA+GGG | 0.661548 | 8.2:+42329021 | MS.gene25515:CDS |
| GGTTGGTTGATGTTGAAAAG+GGG | 0.664123 | 8.2:+42329081 | MS.gene25515:CDS |
| CAACGATCAGGATCTGCCCG+GGG | 0.664425 | 8.2:+42327110 | MS.gene25515:CDS |
| TCTGGTGTTCGTCGACTGTG+GGG | 0.665190 | 8.2:+42326918 | MS.gene25515:CDS |
| CGATCAGGATCTGCCCGGGG+CGG | 0.665741 | 8.2:+42327113 | MS.gene25515:CDS |
| GGGTCATCAAAACCTGAACT+CGG | 0.669945 | 8.2:+42328534 | MS.gene25515:CDS |
| TATCTCACCTGATTAGACAA+TGG | 0.678265 | 8.2:-42329380 | None:intergenic |
| GTAGAGGCCTTCCACAACCG+CGG | 0.679407 | 8.2:+42327148 | MS.gene25515:CDS |
| CCATCCCAGCAGATGCAAGG+AGG | 0.698307 | 8.2:-42328914 | None:intergenic |
| AAATATAGGTAGTATCTCGG+AGG | 0.721969 | 8.2:+42328465 | MS.gene25515:intron |
| TAAGAGATATGAGAACCATG+GGG | 0.795950 | 8.2:+42334349 | MS.gene25515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 42326911 | 42334592 | 42326911 | ID=MS.gene25515 |
| chr8.2 | mRNA | 42326911 | 42334592 | 42326911 | ID=MS.gene25515.t1;Parent=MS.gene25515 |
| chr8.2 | exon | 42326911 | 42327169 | 42326911 | ID=MS.gene25515.t1.exon1;Parent=MS.gene25515.t1 |
| chr8.2 | CDS | 42326911 | 42327169 | 42326911 | ID=cds.MS.gene25515.t1;Parent=MS.gene25515.t1 |
| chr8.2 | exon | 42328473 | 42328631 | 42328473 | ID=MS.gene25515.t1.exon2;Parent=MS.gene25515.t1 |
| chr8.2 | CDS | 42328473 | 42328631 | 42328473 | ID=cds.MS.gene25515.t1;Parent=MS.gene25515.t1 |
| chr8.2 | exon | 42328910 | 42329394 | 42328910 | ID=MS.gene25515.t1.exon3;Parent=MS.gene25515.t1 |
| chr8.2 | CDS | 42328910 | 42329394 | 42328910 | ID=cds.MS.gene25515.t1;Parent=MS.gene25515.t1 |
| chr8.2 | exon | 42334221 | 42334592 | 42334221 | ID=MS.gene25515.t1.exon4;Parent=MS.gene25515.t1 |
| chr8.2 | CDS | 42334221 | 42334592 | 42334221 | ID=cds.MS.gene25515.t1;Parent=MS.gene25515.t1 |
| Gene Sequence |
| Protein sequence |