Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31117.t1 | XP_003597397.2 | 70 | 170 | 47 | 2 | 1 | 170 | 18 | 183 | 2.60E-37 | 165.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31117.t1 | Q2HS36 | 70.0 | 170 | 47 | 2 | 1 | 170 | 18 | 183 | 1.9e-37 | 165.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene31117 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene049284 | MS.gene31117 | 0.832657 | 8.34E-56 | -1.69E-46 |
| MS.gene049297 | MS.gene31117 | 0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene31117 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene31117 | 0.873668 | 1.23E-67 | -1.69E-46 |
| MS.gene049389 | MS.gene31117 | 0.804847 | 1.77E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene31117 | 0.806373 | 8.49E-50 | -1.69E-46 |
| MS.gene049491 | MS.gene31117 | 0.848462 | 6.04E-60 | -1.69E-46 |
| MS.gene049599 | MS.gene31117 | -0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene31117 | 0.85857 | 7.52E-63 | -1.69E-46 |
| MS.gene049662 | MS.gene31117 | 0.856044 | 4.20E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene31117 | 0.892689 | 1.26E-74 | -1.69E-46 |
| MS.gene049760 | MS.gene31117 | 0.836147 | 1.11E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene31117 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene049915 | MS.gene31117 | 0.804191 | 2.43E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene31117 | 0.871586 | 6.10E-67 | -1.69E-46 |
| MS.gene050099 | MS.gene31117 | 0.873461 | 1.44E-67 | -1.69E-46 |
| MS.gene050128 | MS.gene31117 | 0.817142 | 3.84E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene31117 | 0.817613 | 3.01E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene31117 | 0.904373 | 1.31E-79 | -1.69E-46 |
| MS.gene050319 | MS.gene31117 | -0.808253 | 3.39E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene31117 | 0.876387 | 1.45E-68 | -1.69E-46 |
| MS.gene050404 | MS.gene31117 | 0.836658 | 8.23E-57 | -1.69E-46 |
| MS.gene050406 | MS.gene31117 | 0.862522 | 4.77E-64 | -1.69E-46 |
| MS.gene050432 | MS.gene31117 | 0.836822 | 7.47E-57 | -1.69E-46 |
| MS.gene050464 | MS.gene31117 | 0.87359 | 1.31E-67 | -1.69E-46 |
| MS.gene050529 | MS.gene31117 | 0.888749 | 4.48E-73 | -1.69E-46 |
| MS.gene050558 | MS.gene31117 | 0.821253 | 4.46E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene31117 | 0.823511 | 1.33E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene31117 | 0.829759 | 4.30E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene31117 | 0.810994 | 8.74E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene31117 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene31117 | 0.904259 | 1.48E-79 | -1.69E-46 |
| MS.gene05105 | MS.gene31117 | 0.81385 | 2.08E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene31117 | 0.805776 | 1.13E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene31117 | 0.896581 | 3.22E-76 | -1.69E-46 |
| MS.gene051582 | MS.gene31117 | 0.841397 | 4.87E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene31117 | 0.84711 | 1.42E-59 | -1.69E-46 |
| MS.gene051663 | MS.gene31117 | 0.845544 | 3.80E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene31117 | 0.852603 | 4.14E-61 | -1.69E-46 |
| MS.gene051877 | MS.gene31117 | 0.83252 | 9.02E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene31117 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene31117 | 0.974176 | 1.07E-137 | -1.69E-46 |
| MS.gene052178 | MS.gene31117 | 0.871951 | 4.62E-67 | -1.69E-46 |
| MS.gene052188 | MS.gene31117 | 0.859041 | 5.44E-63 | -1.69E-46 |
| MS.gene052207 | MS.gene31117 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene31117 | 0.861875 | 7.54E-64 | -1.69E-46 |
| MS.gene052290 | MS.gene31117 | 0.812835 | 3.47E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene31117 | 0.887573 | 1.27E-72 | -1.69E-46 |
| MS.gene052322 | MS.gene31117 | 0.847863 | 8.83E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene31117 | 0.86234 | 5.43E-64 | -1.69E-46 |
| MS.gene052340 | MS.gene31117 | 0.866217 | 3.35E-65 | -1.69E-46 |
| MS.gene052481 | MS.gene31117 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene31117 | 0.837607 | 4.70E-57 | -1.69E-46 |
| MS.gene052917 | MS.gene31117 | -0.800544 | 1.37E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene31117 | 0.811576 | 6.53E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene31117 | 0.848311 | 6.64E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene31117 | 0.812738 | 3.65E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene31117 | 0.849311 | 3.51E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene31117 | 0.909364 | 6.18E-82 | -1.69E-46 |
| MS.gene053907 | MS.gene31117 | 0.838664 | 2.51E-57 | -1.69E-46 |
| MS.gene053928 | MS.gene31117 | 0.812478 | 4.16E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene31117 | 0.82852 | 8.59E-55 | -1.69E-46 |
| MS.gene054011 | MS.gene31117 | 0.816537 | 5.25E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene31117 | 0.843515 | 1.34E-58 | -1.69E-46 |
| MS.gene054376 | MS.gene31117 | 0.836401 | 9.56E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene31117 | 0.843832 | 1.10E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene31117 | 0.832771 | 7.81E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene31117 | 0.832818 | 7.61E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene31117 | 0.831766 | 1.39E-55 | -1.69E-46 |
| MS.gene054804 | MS.gene31117 | 0.833304 | 5.76E-56 | -1.69E-46 |
| MS.gene054942 | MS.gene31117 | 0.810764 | 9.80E-51 | -1.69E-46 |
| MS.gene054955 | MS.gene31117 | 0.816025 | 6.84E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene31117 | 0.824679 | 7.08E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene31117 | 0.856427 | 3.24E-62 | -1.69E-46 |
| MS.gene055254 | MS.gene31117 | 0.83384 | 4.23E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene31117 | 0.899925 | 1.22E-77 | -1.69E-46 |
| MS.gene055303 | MS.gene31117 | 0.819182 | 1.33E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene31117 | 0.861278 | 1.15E-63 | -1.69E-46 |
| MS.gene055397 | MS.gene31117 | 0.801286 | 9.67E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene31117 | 0.926323 | 5.49E-91 | -1.69E-46 |
| MS.gene055428 | MS.gene31117 | 0.912747 | 1.37E-83 | -1.69E-46 |
| MS.gene05553 | MS.gene31117 | 0.807851 | 4.13E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene31117 | 0.836181 | 1.09E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene31117 | 0.862024 | 6.79E-64 | -1.69E-46 |
| MS.gene055896 | MS.gene31117 | 0.827914 | 1.20E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene31117 | 0.85475 | 1.00E-61 | -1.69E-46 |
| MS.gene056314 | MS.gene31117 | 0.801614 | 8.28E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene31117 | 0.861287 | 1.14E-63 | -1.69E-46 |
| MS.gene056410 | MS.gene31117 | 0.821701 | 3.51E-53 | -1.69E-46 |
| MS.gene056451 | MS.gene31117 | 0.826722 | 2.32E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene31117 | 0.83934 | 1.68E-57 | -1.69E-46 |
| MS.gene056612 | MS.gene31117 | 0.901991 | 1.53E-78 | -1.69E-46 |
| MS.gene056659 | MS.gene31117 | 0.803067 | 4.16E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene31117 | 0.837103 | 6.33E-57 | -1.69E-46 |
| MS.gene056899 | MS.gene31117 | -0.827677 | 1.37E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene31117 | 0.802245 | 6.15E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene31117 | 0.886931 | 2.23E-72 | -1.69E-46 |
| MS.gene057121 | MS.gene31117 | 0.870492 | 1.40E-66 | -1.69E-46 |
| MS.gene057123 | MS.gene31117 | 0.837339 | 5.51E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene31117 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene31117 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene31117 | 0.854656 | 1.06E-61 | -1.69E-46 |
| MS.gene057260 | MS.gene31117 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene31117 | 0.866449 | 2.83E-65 | -1.69E-46 |
| MS.gene05733 | MS.gene31117 | 0.845976 | 2.90E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene31117 | 0.887075 | 1.96E-72 | -1.69E-46 |
| MS.gene057448 | MS.gene31117 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene31117 | 0.804029 | 2.63E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene31117 | 0.822389 | 2.43E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene31117 | 0.820261 | 7.53E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene31117 | 0.813299 | 2.75E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene31117 | 0.893596 | 5.43E-75 | -1.69E-46 |
| MS.gene058082 | MS.gene31117 | 0.836561 | 8.71E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene31117 | 0.897151 | 1.86E-76 | -1.69E-46 |
| MS.gene058142 | MS.gene31117 | 0.852184 | 5.45E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene31117 | 0.849736 | 2.67E-60 | -1.69E-46 |
| MS.gene058276 | MS.gene31117 | 0.86599 | 3.95E-65 | -1.69E-46 |
| MS.gene058293 | MS.gene31117 | 0.858355 | 8.72E-63 | -1.69E-46 |
| MS.gene058365 | MS.gene31117 | 0.816148 | 6.42E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene31117 | 0.90674 | 1.07E-80 | -1.69E-46 |
| MS.gene058710 | MS.gene31117 | 0.818358 | 2.04E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene31117 | 0.821741 | 3.44E-53 | -1.69E-46 |
| MS.gene058787 | MS.gene31117 | 0.818613 | 1.79E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene31117 | 0.825524 | 4.47E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene31117 | 0.855276 | 7.03E-62 | -1.69E-46 |
| MS.gene058928 | MS.gene31117 | 0.836118 | 1.13E-56 | -1.69E-46 |
| MS.gene058993 | MS.gene31117 | 0.840089 | 1.07E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene31117 | 0.882236 | 1.23E-70 | -1.69E-46 |
| MS.gene059141 | MS.gene31117 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene059228 | MS.gene31117 | 0.829644 | 4.59E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene31117 | 0.836724 | 7.91E-57 | -1.69E-46 |
| MS.gene059294 | MS.gene31117 | 0.828587 | 8.28E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene31117 | 0.873342 | 1.58E-67 | -1.69E-46 |
| MS.gene059342 | MS.gene31117 | 0.810659 | 1.03E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene31117 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene31117 | 0.906144 | 2.03E-80 | -1.69E-46 |
| MS.gene059536 | MS.gene31117 | 0.809526 | 1.81E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene31117 | 0.891821 | 2.80E-74 | -1.69E-46 |
| MS.gene05959 | MS.gene31117 | 0.814011 | 1.91E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene31117 | 0.85438 | 1.28E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene31117 | 0.856795 | 2.53E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene31117 | 0.870663 | 1.23E-66 | -1.69E-46 |
| MS.gene059695 | MS.gene31117 | 0.867981 | 9.17E-66 | -1.69E-46 |
| MS.gene059708 | MS.gene31117 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene31117 | 0.887243 | 1.69E-72 | -1.69E-46 |
| MS.gene059894 | MS.gene31117 | 0.900047 | 1.08E-77 | -1.69E-46 |
| MS.gene059899 | MS.gene31117 | 0.811561 | 6.58E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene31117 | 0.825418 | 4.74E-54 | -1.69E-46 |
| MS.gene059974 | MS.gene31117 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene060005 | MS.gene31117 | 0.814819 | 1.27E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene31117 | 0.871405 | 7.01E-67 | -1.69E-46 |
| MS.gene060403 | MS.gene31117 | 0.824929 | 6.18E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene31117 | 0.837657 | 4.57E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene31117 | 0.835405 | 1.71E-56 | -1.69E-46 |
| MS.gene06090 | MS.gene31117 | 0.827885 | 1.22E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene31117 | 0.911623 | 4.93E-83 | -1.69E-46 |
| MS.gene061051 | MS.gene31117 | -0.842341 | 2.74E-58 | -1.69E-46 |
| MS.gene061112 | MS.gene31117 | 0.823908 | 1.08E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene31117 | 0.804646 | 1.96E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene31117 | 0.819763 | 9.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31117.t1 | MTR_2g097680 | 92.398 | 171 | 7 | 4 | 1 | 170 | 18 | 183 | 5.09e-80 | 235 |
| MS.gene31117.t1 | MTR_1g071380 | 90.643 | 171 | 8 | 6 | 1 | 170 | 1 | 164 | 8.29e-77 | 226 |
| MS.gene31117.t1 | MTR_2g097680 | 89.831 | 118 | 6 | 4 | 1 | 117 | 18 | 130 | 2.81e-57 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31117.t1 | AT2G29180 | 41.772 | 158 | 75 | 5 | 20 | 163 | 5 | 159 | 4.46e-24 | 92.8 |
Find 29 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTATCCGTTATCACTAT+TGG | 0.245133 | 2.4:+6188987 | MS.gene31117:CDS |
| GCTTATCCGTTATCACTATT+GGG | 0.260636 | 2.4:+6188988 | MS.gene31117:CDS |
| TCTGGTTGTAGTAGTGATAA+TGG | 0.300412 | 2.4:-6188793 | None:intergenic |
| GAAAGGAAGGTTGCAATCTT+TGG | 0.300675 | 2.4:-6188696 | None:intergenic |
| GCTGTAGCAGCAACAGGATT+TGG | 0.334339 | 2.4:-6188852 | None:intergenic |
| TTCAAAGGAAGTCCAAACTA+TGG | 0.343791 | 2.4:+6188829 | MS.gene31117:CDS |
| CATTGATGCTTCGGAGCAAT+TGG | 0.360695 | 2.4:+6188896 | MS.gene31117:CDS |
| CTGGTTGTAGTAGTGATAAT+GGG | 0.369858 | 2.4:-6188792 | None:intergenic |
| AACAGGATTTGGCCATAGTT+TGG | 0.372494 | 2.4:-6188841 | None:intergenic |
| AAAAGAAAAGAAAAGTAGTA+AGG | 0.384781 | 2.4:+6189988 | MS.gene31117:CDS |
| AGGGCAGGACCTAAAGGATT+TGG | 0.404020 | 2.4:+6190008 | MS.gene31117:CDS |
| GAGAAAGATGAAGAAGTTGT+TGG | 0.423658 | 2.4:-6188768 | None:intergenic |
| TGCTACAGCCATTGATGCTT+CGG | 0.431580 | 2.4:+6188887 | MS.gene31117:CDS |
| TCAACAGCTGTAGCAGCAAC+AGG | 0.437132 | 2.4:-6188858 | None:intergenic |
| CAATTGCTCCGAAGCATCAA+TGG | 0.447559 | 2.4:-6188895 | None:intergenic |
| AGAAGATGATGTTGAAAGGA+AGG | 0.478894 | 2.4:-6188709 | None:intergenic |
| TCATCAACTACCACTGATGA+TGG | 0.480753 | 2.4:+6188921 | MS.gene31117:CDS |
| AAAGAAAAGAAAAGTAGTAA+GGG | 0.491413 | 2.4:+6189989 | MS.gene31117:CDS |
| AAGAAGAAGATGATGTTGAA+AGG | 0.496918 | 2.4:-6188713 | None:intergenic |
| GTAGTAAGGGCAGGACCTAA+AGG | 0.510055 | 2.4:+6190002 | MS.gene31117:CDS |
| CTTATCCGTTATCACTATTG+GGG | 0.525510 | 2.4:+6188989 | MS.gene31117:CDS |
| CATCAACTACCACTGATGAT+GGG | 0.525641 | 2.4:+6188922 | MS.gene31117:CDS |
| AAAAGAAAAGTAGTAAGGGC+AGG | 0.536130 | 2.4:+6189993 | MS.gene31117:CDS |
| ATATACCCCAATAGTGATAA+CGG | 0.550650 | 2.4:-6188994 | None:intergenic |
| TTTCTTGACAAAGAGAGAGA+AGG | 0.571247 | 2.4:+6189926 | MS.gene31117:CDS |
| ATCAACTACCACTGATGATG+GGG | 0.608198 | 2.4:+6188923 | MS.gene31117:CDS |
| AAGAGACACCCCATCATCAG+TGG | 0.647668 | 2.4:-6188931 | None:intergenic |
| GAGAAAGAAGAAGCAGCTAG+CGG | 0.687353 | 2.4:+6189957 | MS.gene31117:CDS |
| TGATGATGCAAATAATGCAG+TGG | 0.718262 | 2.4:-6188664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCTATATTAATAAAAGAAT+TGG | - | chr2.4:6189054-6189073 | None:intergenic | 15.0% |
| !! | TATTCAAAATGAACTAATTA+GGG | - | chr2.4:6189413-6189432 | None:intergenic | 15.0% |
| !!! | AAATGATTATGAACTAATTT+TGG | - | chr2.4:6189386-6189405 | None:intergenic | 15.0% |
| !!! | AATAGAATTTTACAATATTG+AGG | + | chr2.4:6189429-6189448 | MS.gene31117:intron | 15.0% |
| !!! | CAATTCTTTTATTAATATAG+AGG | + | chr2.4:6189052-6189071 | MS.gene31117:intron | 15.0% |
| !!! | TTTTATAAATGTAAATGACT+TGG | + | chr2.4:6189774-6189793 | MS.gene31117:intron | 15.0% |
| !!! | TTTTTCGTTTTGTAATTTTA+TGG | + | chr2.4:6189633-6189652 | MS.gene31117:intron | 15.0% |
| !! | AAAAGAAAAGAAAAGTAGTA+AGG | + | chr2.4:6189988-6190007 | MS.gene31117:CDS | 20.0% |
| !! | AAAGAAAAGAAAAGTAGTAA+GGG | + | chr2.4:6189989-6190008 | MS.gene31117:CDS | 20.0% |
| !! | CTAAATTGATTATGAAAGTT+AGG | - | chr2.4:6189327-6189346 | None:intergenic | 20.0% |
| !! | CTATTCAAAATGAACTAATT+AGG | - | chr2.4:6189414-6189433 | None:intergenic | 20.0% |
| !!! | GAAAATCCATAATTTTTCAA+AGG | + | chr2.4:6188814-6188833 | MS.gene31117:CDS | 20.0% |
| !!! | TATTGACATTACATGTTTTA+GGG | + | chr2.4:6189246-6189265 | MS.gene31117:intron | 20.0% |
| !!! | TTATTGACATTACATGTTTT+AGG | + | chr2.4:6189245-6189264 | MS.gene31117:intron | 20.0% |
| !!! | TTGAAAAATTATGGATTTTC+TGG | - | chr2.4:6188814-6188833 | None:intergenic | 20.0% |
| !!! | TTGCGATTTTAATACATTAA+GGG | - | chr2.4:6189597-6189616 | None:intergenic | 20.0% |
| !!! | TTTGCGATTTTAATACATTA+AGG | - | chr2.4:6189598-6189617 | None:intergenic | 20.0% |
| ! | TTACTTAGCATTAGTATTCA+GGG | + | chr2.4:6189848-6189867 | MS.gene31117:intron | 25.0% |
| ! | TTAGTGAAAATTATTTCCCT+TGG | + | chr2.4:6189162-6189181 | MS.gene31117:intron | 25.0% |
| !! | TTTTGATCTTTGAATATGTG+AGG | - | chr2.4:6189740-6189759 | None:intergenic | 25.0% |
| AAGAAGAAGATGATGTTGAA+AGG | - | chr2.4:6188716-6188735 | None:intergenic | 30.0% | |
| AGTAAAAACGTGTGTTGAAA+TGG | - | chr2.4:6188743-6188762 | None:intergenic | 30.0% | |
| ATATACCCCAATAGTGATAA+CGG | - | chr2.4:6188997-6189016 | None:intergenic | 30.0% | |
| CACATATTTAGAGACCTAAA+TGG | - | chr2.4:6189556-6189575 | None:intergenic | 30.0% | |
| CTAGTTTATACTTTGTAGTG+TGG | - | chr2.4:6189220-6189239 | None:intergenic | 30.0% | |
| GTTACTTAGCATTAGTATTC+AGG | + | chr2.4:6189847-6189866 | MS.gene31117:intron | 30.0% | |
| TTTAGGTCTCTAAATATGTG+AGG | + | chr2.4:6189556-6189575 | MS.gene31117:intron | 30.0% | |
| ! | ATCTTTTGACCAAATCCTTT+AGG | - | chr2.4:6190020-6190039 | None:intergenic | 30.0% |
| ! | CCTCCTATCTAAAACTATTT+CGG | + | chr2.4:6189823-6189842 | MS.gene31117:intron | 30.0% |
| ! | CTTTTCTTCATTGCTTTCAT+TGG | + | chr2.4:6188966-6188985 | MS.gene31117:CDS | 30.0% |
| ! | GGACTTCCTTTGAAAAATTA+TGG | - | chr2.4:6188823-6188842 | None:intergenic | 30.0% |
| ! | TTTAAAGCAAACAGCCATTT+AGG | + | chr2.4:6189539-6189558 | MS.gene31117:intron | 30.0% |
| !! | TTTTTGTTTGTTTGTGTTGC+AGG | + | chr2.4:6189881-6189900 | MS.gene31117:intron | 30.0% |
| !!! | ACACCGAAATAGTTTTAGAT+AGG | - | chr2.4:6189829-6189848 | None:intergenic | 30.0% |
| AAAAGAAAAGTAGTAAGGGC+AGG | + | chr2.4:6189993-6190012 | MS.gene31117:CDS | 35.0% | |
| AGAAGATGATGTTGAAAGGA+AGG | - | chr2.4:6188712-6188731 | None:intergenic | 35.0% | |
| ATTCCATGTCATATTGTCCA+AGG | - | chr2.4:6189182-6189201 | None:intergenic | 35.0% | |
| CTGGTTGTAGTAGTGATAAT+GGG | - | chr2.4:6188795-6188814 | None:intergenic | 35.0% | |
| CTTATCCGTTATCACTATTG+GGG | + | chr2.4:6188989-6189008 | MS.gene31117:CDS | 35.0% | |
| GAGAAAGATGAAGAAGTTGT+TGG | - | chr2.4:6188771-6188790 | None:intergenic | 35.0% | |
| GCTTATCCGTTATCACTATT+GGG | + | chr2.4:6188988-6189007 | MS.gene31117:CDS | 35.0% | |
| TCTGGTTGTAGTAGTGATAA+TGG | - | chr2.4:6188796-6188815 | None:intergenic | 35.0% | |
| TTCAAAGGAAGTCCAAACTA+TGG | + | chr2.4:6188829-6188848 | MS.gene31117:CDS | 35.0% | |
| TTCCATGTCATATTGTCCAA+GGG | - | chr2.4:6189181-6189200 | None:intergenic | 35.0% | |
| TTGAGACATGCTTGCAATTT+CGG | - | chr2.4:6189089-6189108 | None:intergenic | 35.0% | |
| TTTCTTGACAAAGAGAGAGA+AGG | + | chr2.4:6189926-6189945 | MS.gene31117:CDS | 35.0% | |
| ! | TGATGATGCAAATAATGCAG+TGG | - | chr2.4:6188667-6188686 | None:intergenic | 35.0% |
| !!! | CCGAAATAGTTTTAGATAGG+AGG | - | chr2.4:6189826-6189845 | None:intergenic | 35.0% |
| AACAGGATTTGGCCATAGTT+TGG | - | chr2.4:6188844-6188863 | None:intergenic | 40.0% | |
| AATCGCAAACACATCTCTAG+TGG | + | chr2.4:6189609-6189628 | MS.gene31117:intron | 40.0% | |
| ACACATGCAGTCAACTTACT+AGG | - | chr2.4:6189352-6189371 | None:intergenic | 40.0% | |
| CACATGCAGTCAACTTACTA+GGG | - | chr2.4:6189351-6189370 | None:intergenic | 40.0% | |
| CATCAACTACCACTGATGAT+GGG | + | chr2.4:6188922-6188941 | MS.gene31117:CDS | 40.0% | |
| CTTAGCATTAGTATTCAGGG+AGG | + | chr2.4:6189851-6189870 | MS.gene31117:intron | 40.0% | |
| GAAAGGAAGGTTGCAATCTT+TGG | - | chr2.4:6188699-6188718 | None:intergenic | 40.0% | |
| GGCAAATGGTCACGATTTAA+AGG | + | chr2.4:6189489-6189508 | MS.gene31117:intron | 40.0% | |
| GGCTTATCCGTTATCACTAT+TGG | + | chr2.4:6188987-6189006 | MS.gene31117:CDS | 40.0% | |
| TCATCAACTACCACTGATGA+TGG | + | chr2.4:6188921-6188940 | MS.gene31117:CDS | 40.0% | |
| TTCCCTTGGACAATATGACA+TGG | + | chr2.4:6189176-6189195 | MS.gene31117:intron | 40.0% | |
| ! | AGTAAGTTGACTGCATGTGT+TGG | + | chr2.4:6189352-6189371 | MS.gene31117:intron | 40.0% |
| ! | ATCAACTACCACTGATGATG+GGG | + | chr2.4:6188923-6188942 | MS.gene31117:CDS | 40.0% |
| CATTGATGCTTCGGAGCAAT+TGG | + | chr2.4:6188896-6188915 | MS.gene31117:CDS | 45.0% | |
| GAGAAAGAAGAAGCAGCTAG+CGG | + | chr2.4:6189957-6189976 | MS.gene31117:CDS | 45.0% | |
| TGCTACAGCCATTGATGCTT+CGG | + | chr2.4:6188887-6188906 | MS.gene31117:CDS | 45.0% | |
| ! | CAATTGCTCCGAAGCATCAA+TGG | - | chr2.4:6188898-6188917 | None:intergenic | 45.0% |
| ! | GCCAAAACGAGTGACTAGTT+TGG | + | chr2.4:6189468-6189487 | MS.gene31117:intron | 45.0% |
| ! | GCCAAACTAGTCACTCGTTT+TGG | - | chr2.4:6189472-6189491 | None:intergenic | 45.0% |
| !! | CGAGTGACTAGTTTGGCAAA+TGG | + | chr2.4:6189475-6189494 | MS.gene31117:intron | 45.0% |
| AAGAGACACCCCATCATCAG+TGG | - | chr2.4:6188934-6188953 | None:intergenic | 50.0% | |
| AGGGCAGGACCTAAAGGATT+TGG | + | chr2.4:6190008-6190027 | MS.gene31117:CDS | 50.0% | |
| GCTGTAGCAGCAACAGGATT+TGG | - | chr2.4:6188855-6188874 | None:intergenic | 50.0% | |
| GTAGTAAGGGCAGGACCTAA+AGG | + | chr2.4:6190002-6190021 | MS.gene31117:CDS | 50.0% | |
| TCAACAGCTGTAGCAGCAAC+AGG | - | chr2.4:6188861-6188880 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6188660 | 6190064 | 6188660 | ID=MS.gene31117 |
| chr2.4 | mRNA | 6188660 | 6190064 | 6188660 | ID=MS.gene31117.t1;Parent=MS.gene31117 |
| chr2.4 | exon | 6188660 | 6189010 | 6188660 | ID=MS.gene31117.t1.exon1;Parent=MS.gene31117.t1 |
| chr2.4 | CDS | 6188660 | 6189010 | 6188660 | ID=cds.MS.gene31117.t1;Parent=MS.gene31117.t1 |
| chr2.4 | exon | 6189903 | 6190064 | 6189903 | ID=MS.gene31117.t1.exon2;Parent=MS.gene31117.t1 |
| chr2.4 | CDS | 6189903 | 6190064 | 6189903 | ID=cds.MS.gene31117.t1;Parent=MS.gene31117.t1 |
| Gene Sequence |
| Protein sequence |
