Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36842.t1 | XP_013445680.1 | 83.3 | 424 | 62 | 3 | 1 | 423 | 1 | 416 | 2.30E-196 | 694.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36842.t1 | E9Q349 | 38.9 | 316 | 182 | 5 | 113 | 422 | 224 | 534 | 1.6e-65 | 251.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36842.t1 | A0A072TR58 | 83.3 | 424 | 62 | 3 | 1 | 423 | 1 | 416 | 1.7e-196 | 694.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36842.t1 | MTR_8g467040 | 85.748 | 428 | 44 | 5 | 1 | 423 | 1 | 416 | 0.0 | 728 |
MS.gene36842.t1 | MTR_4g102520 | 33.226 | 310 | 193 | 4 | 114 | 419 | 282 | 581 | 3.27e-52 | 184 |
MS.gene36842.t1 | MTR_1g072740 | 32.881 | 295 | 176 | 6 | 114 | 397 | 281 | 564 | 6.05e-41 | 153 |
MS.gene36842.t1 | MTR_7g086360 | 26.948 | 308 | 205 | 9 | 122 | 423 | 51 | 344 | 6.61e-24 | 102 |
MS.gene36842.t1 | MTR_1g072140 | 26.367 | 311 | 200 | 11 | 115 | 417 | 16 | 305 | 1.63e-23 | 100 |
MS.gene36842.t1 | MTR_4g119620 | 26.282 | 312 | 204 | 10 | 112 | 412 | 13 | 309 | 1.32e-20 | 92.4 |
MS.gene36842.t1 | MTR_3g449990 | 24.375 | 320 | 221 | 11 | 108 | 422 | 252 | 555 | 4.17e-14 | 74.7 |
MS.gene36842.t1 | MTR_8g092620 | 22.667 | 300 | 186 | 10 | 161 | 423 | 8 | 298 | 5.56e-14 | 72.8 |
MS.gene36842.t1 | MTR_8g092620 | 22.635 | 296 | 183 | 10 | 161 | 419 | 15 | 301 | 2.86e-13 | 70.9 |
MS.gene36842.t1 | MTR_1g069345 | 23.344 | 317 | 216 | 10 | 115 | 422 | 205 | 503 | 1.36e-11 | 66.6 |
MS.gene36842.t1 | MTR_3g045130 | 25.751 | 233 | 145 | 7 | 107 | 330 | 294 | 507 | 2.42e-11 | 65.9 |
MS.gene36842.t1 | MTR_5g016370 | 23.438 | 320 | 214 | 10 | 122 | 422 | 243 | 550 | 8.25e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36842.t1 | AT5G54520 | 66.172 | 337 | 114 | 0 | 87 | 423 | 121 | 457 | 4.46e-177 | 502 |
MS.gene36842.t1 | AT1G10580 | 33.746 | 323 | 200 | 4 | 105 | 423 | 261 | 573 | 6.66e-56 | 194 |
MS.gene36842.t1 | AT4G02730 | 26.384 | 307 | 197 | 10 | 115 | 412 | 32 | 318 | 2.28e-25 | 106 |
MS.gene36842.t1 | AT2G43770 | 26.144 | 306 | 210 | 8 | 122 | 423 | 49 | 342 | 2.99e-22 | 97.4 |
MS.gene36842.t1 | AT3G49660 | 25.890 | 309 | 211 | 9 | 119 | 422 | 17 | 312 | 8.06e-22 | 95.9 |
MS.gene36842.t1 | AT5G64730 | 23.151 | 311 | 220 | 9 | 114 | 423 | 6 | 298 | 1.54e-12 | 68.6 |
MS.gene36842.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 120 | 304 | 254 | 436 | 2.37e-12 | 69.3 |
MS.gene36842.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 120 | 304 | 231 | 413 | 2.47e-12 | 69.3 |
MS.gene36842.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 120 | 304 | 231 | 413 | 2.48e-12 | 69.3 |
MS.gene36842.t1 | AT5G13480 | 29.534 | 193 | 118 | 7 | 120 | 304 | 243 | 425 | 2.59e-12 | 69.3 |
MS.gene36842.t1 | AT5G43920 | 21.136 | 317 | 231 | 8 | 112 | 422 | 210 | 513 | 2.34e-11 | 65.9 |
Find 103 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCTGAAATTGCACTTAAT+TGG | 0.089098 | 8.4:-43840334 | None:intergenic |
TATGAGAACCATGGGGTTTC+TGG | 0.132809 | 8.4:+43840307 | MS.gene36842:CDS |
CATAACTATAATCGAAATTT+AGG | 0.181559 | 8.4:+43833990 | MS.gene36842:CDS |
AATTCAAGTCTCTTTCTTTC+TGG | 0.210960 | 8.4:+43833915 | MS.gene36842:CDS |
CTCATGGGATGGAAGTATTT+TGG | 0.214310 | 8.4:+43840510 | MS.gene36842:CDS |
GTCCATGCATGCTTGGTTAA+AGG | 0.247778 | 8.4:-43840446 | None:intergenic |
GCAATAACATTAGGCAAAAC+TGG | 0.260777 | 8.4:-43840481 | None:intergenic |
AAGTGCAATTTCAGCTTAGA+TGG | 0.263435 | 8.4:+43840340 | MS.gene36842:CDS |
GCTCACCTCCTTGCATCTGC+TGG | 0.268487 | 8.4:+43833660 | MS.gene36842:intron |
CTCCCTTCTCCCATTCTTCC+AGG | 0.281987 | 8.4:+43830909 | MS.gene36842:CDS |
AAGAATGGGAGAAGGGAGAT+AGG | 0.283299 | 8.4:-43830904 | None:intergenic |
CTGACATGATTTCAGTCGTT+TGG | 0.292679 | 8.4:-43830856 | None:intergenic |
TCAACAATGCTACAATGTTA+TGG | 0.295169 | 8.4:-43833249 | None:intergenic |
CAACAATGCTACAATGTTAT+GGG | 0.316478 | 8.4:-43833248 | None:intergenic |
ATGTCTTCAAGTGATGTATC+TGG | 0.329819 | 8.4:+43834056 | MS.gene36842:CDS |
GTGAGAATTCTATTATCGTT+TGG | 0.344806 | 8.4:+43834090 | MS.gene36842:CDS |
AGCTGAAATTGCACTTAATT+GGG | 0.350793 | 8.4:-43840333 | None:intergenic |
TGAGAATTCTATTATCGTTT+GGG | 0.353439 | 8.4:+43834091 | MS.gene36842:CDS |
ATTCAAGTCTCTTTCTTTCT+GGG | 0.354972 | 8.4:+43833916 | MS.gene36842:CDS |
GCTTGTCAGGTACCGAGTTC+AGG | 0.356109 | 8.4:-43833297 | None:intergenic |
TTGTATTTGTTGAGTCTGTA+TGG | 0.357549 | 8.4:-43840280 | None:intergenic |
GATGTCGAGTTTACAACAAA+TGG | 0.364650 | 8.4:+43834023 | MS.gene36842:CDS |
TTCAAAGAAGATCAAATTGT+TGG | 0.374362 | 8.4:+43833870 | MS.gene36842:CDS |
TGACATGATTTCAGTCGTTT+GGG | 0.386304 | 8.4:-43830855 | None:intergenic |
AAGCTATCTGCAACTCTGTC+TGG | 0.412532 | 8.4:+43833316 | MS.gene36842:CDS |
ATGTTATTGCTTCATGCTCA+TGG | 0.419798 | 8.4:+43840494 | MS.gene36842:CDS |
AGAAAGAGACTTGAATTGTC+TGG | 0.420157 | 8.4:-43833909 | None:intergenic |
CCTCCTTGCATCTGCTGGGA+TGG | 0.421099 | 8.4:+43833665 | MS.gene36842:CDS |
ATGAGAACCATGGGGTTTCT+GGG | 0.423886 | 8.4:+43840308 | MS.gene36842:CDS |
GAGCATGAAGCAATAACATT+AGG | 0.424741 | 8.4:-43840490 | None:intergenic |
TGATATCCCATAGCTTGATA+TGG | 0.425356 | 8.4:-43833950 | None:intergenic |
ACAGGTACCATTGTCTAATC+AGG | 0.425682 | 8.4:+43834124 | MS.gene36842:CDS |
GGAGAAGGGAGATAGGGTTT+TGG | 0.428156 | 8.4:-43830897 | None:intergenic |
AGGTTGGTTGATGTTGAAAA+GGG | 0.433049 | 8.4:+43833831 | MS.gene36842:CDS |
AAGGTTGGTTGATGTTGAAA+AGG | 0.438941 | 8.4:+43833830 | MS.gene36842:CDS |
CTCACCTCCTTGCATCTGCT+GGG | 0.448124 | 8.4:+43833661 | MS.gene36842:CDS |
AGAGTTGCAGATAGCTTGTC+AGG | 0.454221 | 8.4:-43833310 | None:intergenic |
AACGTAACTACCTGGAAGAA+TGG | 0.455459 | 8.4:-43830919 | None:intergenic |
ATTTGTTGAGTCTGTATGGT+GGG | 0.464723 | 8.4:-43840276 | None:intergenic |
GATGGGAAGAAGCTTGCATC+TGG | 0.466105 | 8.4:+43840358 | MS.gene36842:CDS |
AAGCTATGGGATATCAGAAC+TGG | 0.476171 | 8.4:+43833957 | MS.gene36842:CDS |
AGAATGGGAGAAGGGAGATA+GGG | 0.478090 | 8.4:-43830903 | None:intergenic |
GCTTCTGAATCAGGTTTATG+TGG | 0.478796 | 8.4:+43840159 | MS.gene36842:intron |
ACGTAACTACCTGGAAGAAT+GGG | 0.479446 | 8.4:-43830918 | None:intergenic |
GGGCACTTCTTGCTTTCTTG+TGG | 0.484923 | 8.4:+43833792 | MS.gene36842:CDS |
CTTGCATCTGGCTCTTCAGA+TGG | 0.486666 | 8.4:+43840370 | MS.gene36842:CDS |
TTCAAGTCTCTTTCTTTCTG+GGG | 0.490030 | 8.4:+43833917 | MS.gene36842:CDS |
ATCGGGTGTTCGTCGACTGT+GGG | 0.495532 | 8.4:+43831346 | MS.gene36842:CDS |
TCAAGTCTCTTTCTTTCTGG+GGG | 0.500922 | 8.4:+43833918 | MS.gene36842:CDS |
CAAAGGGCCATATCAAGCTA+TGG | 0.503725 | 8.4:+43833943 | MS.gene36842:CDS |
CATATAGAATTGATCTGTGC+GGG | 0.506824 | 8.4:+43831280 | MS.gene36842:CDS |
ATGTCGAGTTTACAACAAAT+GGG | 0.515879 | 8.4:+43834024 | MS.gene36842:CDS |
GGCCTTTAACCAAGCATGCA+TGG | 0.516184 | 8.4:+43840444 | MS.gene36842:CDS |
ACAAGAGATATGAGAACCAT+GGG | 0.529817 | 8.4:+43840299 | MS.gene36842:CDS |
GATCGGGTGTTCGTCGACTG+TGG | 0.534882 | 8.4:+43831345 | MS.gene36842:CDS |
CATCTTTCACTGCTGCATTG+TGG | 0.536720 | 8.4:-43833752 | None:intergenic |
CATAAATATAGGTAGTATCT+CGG | 0.537273 | 8.4:+43833213 | MS.gene36842:intron |
TGTTATTGCTTCATGCTCAT+GGG | 0.537623 | 8.4:+43840495 | MS.gene36842:CDS |
CGTTTGGGATGTGTCAAGAC+AGG | 0.538329 | 8.4:+43834106 | MS.gene36842:CDS |
CAGCAGTGAAAGATGTGAAA+TGG | 0.541653 | 8.4:+43833760 | MS.gene36842:CDS |
TGTCTTCAAGTGATGTATCT+GGG | 0.549234 | 8.4:+43834057 | MS.gene36842:CDS |
ATTGTTGAAAAGTAAAGCAA+AGG | 0.551190 | 8.4:+43833264 | MS.gene36842:CDS |
ATTAGGCAAAACTGGGTGGA+AGG | 0.557065 | 8.4:-43840473 | None:intergenic |
AGTGCAATTTCAGCTTAGAT+GGG | 0.561560 | 8.4:+43840341 | MS.gene36842:CDS |
TTGTTGAAAAGTAAAGCAAA+GGG | 0.562663 | 8.4:+43833265 | MS.gene36842:CDS |
AAAGGGCCATATCAAGCTAT+GGG | 0.566987 | 8.4:+43833944 | MS.gene36842:CDS |
GGTTGATGTTGAAAAGGGGA+TGG | 0.571477 | 8.4:+43833836 | MS.gene36842:CDS |
CATCTGTACTGATGACGATC+GGG | 0.575008 | 8.4:+43831329 | MS.gene36842:CDS |
TACCTGGAAGAATGGGAGAA+GGG | 0.579867 | 8.4:-43830911 | None:intergenic |
AGAGACTTGAATTGTCTGGA+TGG | 0.583021 | 8.4:-43833905 | None:intergenic |
TTTGTTGAGTCTGTATGGTG+GGG | 0.587259 | 8.4:-43840275 | None:intergenic |
ATACATTGGTCATCAACTCA+TGG | 0.592308 | 8.4:+43833361 | MS.gene36842:CDS |
GTTGAGTCTGTATGGTGGGG+TGG | 0.595657 | 8.4:-43840272 | None:intergenic |
ATCTGTGCGGGAATAGAACT+AGG | 0.597246 | 8.4:+43831292 | MS.gene36842:CDS |
ACATCTGTACTGATGACGAT+CGG | 0.597689 | 8.4:+43831328 | MS.gene36842:CDS |
ATCAGTACAGATGTCGAGAT+CGG | 0.599375 | 8.4:-43831319 | None:intergenic |
GTGGATATGATTGCACATCA+AGG | 0.600456 | 8.4:+43833811 | MS.gene36842:CDS |
CAATAACATTAGGCAAAACT+GGG | 0.602442 | 8.4:-43840480 | None:intergenic |
TGTCCATCCCAGCAGATGCA+AGG | 0.605709 | 8.4:-43833668 | None:intergenic |
AGGCAATGTCCATGCATGCT+TGG | 0.606698 | 8.4:-43840453 | None:intergenic |
CTACCTGGAAGAATGGGAGA+AGG | 0.610184 | 8.4:-43830912 | None:intergenic |
AACAATGCTACAATGTTATG+GGG | 0.613093 | 8.4:-43833247 | None:intergenic |
GAGCTGTCAATGCTATACAT+TGG | 0.614108 | 8.4:+43833347 | MS.gene36842:CDS |
TCACATACTATGTTGAGCAT+CGG | 0.615510 | 8.4:-43831397 | None:intergenic |
TATTTGTTGAGTCTGTATGG+TGG | 0.615770 | 8.4:-43840277 | None:intergenic |
ATTGCTTCATGCTCATGGGA+TGG | 0.618591 | 8.4:+43840499 | MS.gene36842:CDS |
TACAAGAGATATGAGAACCA+TGG | 0.619211 | 8.4:+43840298 | MS.gene36842:CDS |
AAGGGGTGAATTCTAATGCA+AGG | 0.619618 | 8.4:-43840196 | None:intergenic |
ATATGATTGCACATCAAGGT+TGG | 0.628197 | 8.4:+43833815 | MS.gene36842:CDS |
TTGGGAACCCAGAAACCCCA+TGG | 0.636691 | 8.4:-43840315 | None:intergenic |
ATCTGCTGGGATGGACAATG+TGG | 0.644625 | 8.4:+43833674 | MS.gene36842:CDS |
GATGTGAAATGGTCTCAACA+AGG | 0.649349 | 8.4:+43833771 | MS.gene36842:CDS |
TAACATTAGGCAAAACTGGG+TGG | 0.660319 | 8.4:-43840477 | None:intergenic |
ATGTGAAATGGTCTCAACAA+GGG | 0.661548 | 8.4:+43833772 | MS.gene36842:CDS |
GGTTGGTTGATGTTGAAAAG+GGG | 0.664123 | 8.4:+43833832 | MS.gene36842:CDS |
GGGTCATCAAAACCTGAACT+CGG | 0.669945 | 8.4:+43833285 | MS.gene36842:CDS |
TACTATGTTGAGCATCGGAG+CGG | 0.671240 | 8.4:-43831392 | None:intergenic |
TCGGGTGTTCGTCGACTGTG+GGG | 0.674316 | 8.4:+43831347 | MS.gene36842:CDS |
TATCTCACCTGATTAGACAA+TGG | 0.678265 | 8.4:-43834131 | None:intergenic |
GCATATAGAATTGATCTGTG+CGG | 0.684166 | 8.4:+43831279 | MS.gene36842:intron |
CCATCCCAGCAGATGCAAGG+AGG | 0.698307 | 8.4:-43833665 | None:intergenic |
AAATATAGGTAGTATCTCGG+AGG | 0.721969 | 8.4:+43833216 | MS.gene36842:intron |
CAAGAGATATGAGAACCATG+GGG | 0.792722 | 8.4:+43840300 | MS.gene36842:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 43830807 | 43840543 | 43830807 | ID=MS.gene36842 |
chr8.4 | mRNA | 43830807 | 43840543 | 43830807 | ID=MS.gene36842.t1;Parent=MS.gene36842 |
chr8.4 | exon | 43830807 | 43830930 | 43830807 | ID=MS.gene36842.t1.exon1;Parent=MS.gene36842.t1 |
chr8.4 | CDS | 43830807 | 43830930 | 43830807 | ID=cds.MS.gene36842.t1;Parent=MS.gene36842.t1 |
chr8.4 | exon | 43831280 | 43831411 | 43831280 | ID=MS.gene36842.t1.exon2;Parent=MS.gene36842.t1 |
chr8.4 | CDS | 43831280 | 43831411 | 43831280 | ID=cds.MS.gene36842.t1;Parent=MS.gene36842.t1 |
chr8.4 | exon | 43833224 | 43833382 | 43833224 | ID=MS.gene36842.t1.exon3;Parent=MS.gene36842.t1 |
chr8.4 | CDS | 43833224 | 43833382 | 43833224 | ID=cds.MS.gene36842.t1;Parent=MS.gene36842.t1 |
chr8.4 | exon | 43833661 | 43834145 | 43833661 | ID=MS.gene36842.t1.exon4;Parent=MS.gene36842.t1 |
chr8.4 | CDS | 43833661 | 43834145 | 43833661 | ID=cds.MS.gene36842.t1;Parent=MS.gene36842.t1 |
chr8.4 | exon | 43840172 | 43840543 | 43840172 | ID=MS.gene36842.t1.exon5;Parent=MS.gene36842.t1 |
chr8.4 | CDS | 43840172 | 43840543 | 43840172 | ID=cds.MS.gene36842.t1;Parent=MS.gene36842.t1 |
Gene Sequence |
Protein sequence |