AlfalfaGEDB | MS.gene98750

M. sativa cultivar XinJiangDaYe / MS.gene98750

KEGG: -
GO: -
PFAM: PF13369.9 PF13371.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98750.t1	XP_003598518.1	98.1	422	8	0	1	422	1	422	6.50E-239	836.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98750.t1	G7J0K8	98.1	422	8	0	1	422	1	422	4.7e-239	836.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene98750	0.816943	4.26E-52	-1.69E-46
MS.gene049171	MS.gene98750	0.887603	1.23E-72	-1.69E-46
MS.gene049217	MS.gene98750	0.837123	6.26E-57	-1.69E-46
MS.gene049222	MS.gene98750	0.886543	3.12E-72	-1.69E-46
MS.gene049232	MS.gene98750	0.816317	5.89E-52	-1.69E-46
MS.gene049285	MS.gene98750	0.878177	3.47E-69	-1.69E-46
MS.gene049320	MS.gene98750	0.873956	9.84E-68	-1.69E-46
MS.gene04939	MS.gene98750	0.835599	1.53E-56	-1.69E-46
MS.gene049609	MS.gene98750	0.834187	3.47E-56	-1.69E-46
MS.gene049627	MS.gene98750	0.824948	6.12E-54	-1.69E-46

Showing 1 to 10 of 131 entries

Previous1 2 3 4 5…14Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98750.t1	MTR_3g014680	98.104	422	8	0	1	422	1	422	0.0	860

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 78 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAGGAGGGCAAAAT+TGG	0.270665	3.4:-10870523	None:intergenic
AAACAAAAGAGGAACTACCA+TGG	0.668179	3.4:-10875894	None:intergenic
AAACCAGCATCTGCATTAAC+AGG	0.395173	3.4:+10871781	MS.gene98750:CDS
AAGAACCAGTGCAAATCTAT+TGG	0.400814	3.4:+10873890	MS.gene98750:CDS
AAGATTAGATGATCTTTCAA+TGG	0.495549	3.4:+10871902	MS.gene98750:CDS
AAGCACACATAATGACATCA+GGG	0.674877	3.4:+10874209	MS.gene98750:CDS
AATCTCATCCAGTTGGAGCA+AGG	0.604560	3.4:+10875822	MS.gene98750:CDS
AATGACATCAGGGAATCTAT+TGG	0.474691	3.4:+10874219	MS.gene98750:CDS
AATGAGCAGGAAGCCAGGGA+AGG	0.640830	3.4:+10871717	MS.gene98750:intron
ACAAGCACTCTATCTTCACT+CGG	0.662211	3.4:+10873917	MS.gene98750:CDS

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCGATTGGTAAGATAA+GGG	+	chr3.4:10874589-10874608	MS.gene98750:intron	30.0%
AAAAGGGAAAAGGAAAATGA+AGG	+	chr3.4:10872809-10872828	MS.gene98750:intron	30.0%
AAACAAAAATCCACCATTAC+AGG	-	chr3.4:10870804-10870823	None:intergenic	30.0%
AACTCTCATAATGCCAAAAA+GGG	+	chr3.4:10872793-10872812	MS.gene98750:intron	30.0%
AAGTGATTAAAGGTAGCTAT+AGG	+	chr3.4:10871194-10871213	MS.gene98750:intron	30.0%
AATACCATTCTTATCACTTC+AGG	+	chr3.4:10873031-10873050	MS.gene98750:intron	30.0%
ACTCAAATGCCTTAGAATTT+GGG	-	chr3.4:10872284-10872303	None:intergenic	30.0%
ACTTGAGATTAAGGTGTATT+TGG	-	chr3.4:10871346-10871365	None:intergenic	30.0%
AGAACTCACAATAATTTACG+TGG	+	chr3.4:10874670-10874689	MS.gene98750:intron	30.0%
AGTGCATATTGAATGAGATA+TGG	+	chr3.4:10872254-10872273	MS.gene98750:intron	30.0%

Showing 1 to 10 of 353 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	10870461	10875902	10870461	ID=MS.gene98750
chr3.4	mRNA	10870461	10875902	10870461	ID=MS.gene98750.t1;Parent=MS.gene98750
chr3.4	exon	10870461	10870667	10870461	ID=MS.gene98750.t1.exon1;Parent=MS.gene98750.t1
chr3.4	CDS	10870461	10870667	10870461	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10871726	10872010	10871726	ID=MS.gene98750.t1.exon2;Parent=MS.gene98750.t1
chr3.4	CDS	10871726	10872010	10871726	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10873882	10873938	10873882	ID=MS.gene98750.t1.exon3;Parent=MS.gene98750.t1
chr3.4	CDS	10873882	10873938	10873882	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10874037	10874246	10874037	ID=MS.gene98750.t1.exon4;Parent=MS.gene98750.t1
chr3.4	CDS	10874037	10874246	10874037	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10874953	10875071	10874953	ID=MS.gene98750.t1.exon5;Parent=MS.gene98750.t1
chr3.4	CDS	10874953	10875071	10874953	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10875160	10875257	10875160	ID=MS.gene98750.t1.exon6;Parent=MS.gene98750.t1
chr3.4	CDS	10875160	10875257	10875160	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10875364	10875488	10875364	ID=MS.gene98750.t1.exon7;Parent=MS.gene98750.t1
chr3.4	CDS	10875364	10875488	10875364	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1
chr3.4	exon	10875735	10875902	10875735	ID=MS.gene98750.t1.exon8;Parent=MS.gene98750.t1
chr3.4	CDS	10875735	10875902	10875735	ID=cds.MS.gene98750.t1;Parent=MS.gene98750.t1

Gene Sequence

>MS.gene98750

ATGTCTTCTGTCTCATCTTCTTCTCTTCCCACAACCTCTTTCTTCTCTACATTCTCAAAATTCCAATTTTGCCCTCCTTCATTTTCTTATTCATCCCCTCGTGTGATATGTCATGGAGGCTCCAACGTTCAACACGCGGCAACTGACCTCAAGTTCTTCTTGCATGATGCTCTTGATGCTTCTGGAATTGATACTGCTCATGCCAGAGTAAAAAACTCATGTCTTGATTCTTCAAATTTTAAGATTGTTTTTGGTTTAATGAATTGTTTTATTTGTTTAATTTGGATGGTTTGATTTAATTCATGTTAAATGAAGCTTGGAAACATGTAGAATTTGTCATCCTGTAATGGTGGATTTTTGTTTTTTAATTTGAAACATCTCAAAACACAGGGACACTGACACGTCGACATCGATAATAATTTGAGAAAATGACATAATTCAGTGTAATCAATGTTATGCGTCAGAGTTGGACACTTACACGTGAGACACTAGACACACCTTTGATCATAAGTGTCGGTCCTACAAAGATTTGAATTCATTTCAAGTTATGAACTTTTGTATTTTTTATTTTTTTTGGTTTTATTTATGAGTTTGAGCTTGAGTTTTAAGGTTTGCTTTTCTTTTCATTTGTTTTTTAATTTCTTGTCATTCTGTTTTTTTATTTTTTATTTTTTTCCGTCCTATGAAACACTGAGACAGACACGTAGATAATGATAATAATTGAAGAAAATTGAAGTGATTAAAGGTAGCTATAGGTTTGTGTTATCACATGTCAAACACCAGATACACCTTTTTTTTGGTGGTGGCCGGGGCTCGAACCCTAGACCTGACATATATTATGCATCGTCCCTACCAACTGAACTAAGTTCATAAGGACAAACACCAAATACACCTTAATCTCAAGTGTCAGTGCTGCAGAGATTTGATTTATTGAAAAAGGGCAATTTAATATATATATAATGTATTTAAGATGGTGATAGTATGTTACCTTGTTTGGACTAAAAATTCTTTTGTCGTAATTTGCTTGGTTTTCTTTAGTGGGTGTATTACATGTTATGAGTTTCCTCATTCCATTTTTTGTTATAACTTTTTTTCTTTTCAAATCTTGATATTGAGGGAAATTGTGGGTAATTAAGGCCAATGGATCCGTAATTGCGTTTACGGTGTCATTGCAAAAACCTCTAAAATTGTCATTTGGTTTTGAACTTCAGGATTTGATACTGAATAATCTTAATTTGTTGGGTGGTTGATTTATGAATGAGCAGGAAGCCAGGGAAGGATTCTGTTCACAAATTAAGAGACTTACTGATATTGAGAAAGAAACCAGCATCTGCATTAACAGGCATGTTGATTTGGGCAGAACTGCTCTCTATATAGCTGCAGAAGATGATTCTCTGGTATCACATTCGTCGGTTCCGCTTCCTGTCGATGCTTTCGTTGCAAGATTAGATGATCTTTCAATGGACTACTGTCCTCACTACACCCCTTCATATGATTCATCGCCCGAGAAGTTTTTAGAGAGCATAGAAAGATTTTTGTATGTTCACAAGGTAAGATTTTTGTATGTTCACAAGGTATGTAGTTTGATTGCATGAGATATGCCCTTGAAATGAGTTTATTTTGGGAAACATCTTTCACCTTACAAGTCAATTTTGTATGATTAAGATTGGCCCAACCTAAATTTAAGATGATATCAGAACCTATCCAAGATGTATTGGGGCCACCTGTTATCAGGCTTCCTCTAGCCTCGCTCTAAATCTCACAGTCCTGTGTGAAGGGGTGGGTGTGTTTAGAGTGCATATTGAATGAGATATGGCTAACCCAAATTCTAAGGCATTTGAGTATGGTGTCTGTATTAACTACAAAAGGATTTTGAACTCTGAAGCATTATCTTAGGATACAGATGTTAACAATTAGGTTCATTTTAGGTTTAAAATTTTAACAAGTGATCAAATTTGTGTAGTTTAGCTGCAAGTCAAATATGGGAATGAGAGAACTCATAAATTGATTTCTAAAAAAGTGTTCAAAGAAAATGTAATTGTGTTCTGTTGACTTTTTATAAATTCTCTTTACTTAATGACTTGTAATCAAGAGATACCGATAATAATTAAAATGTGATTGAATAGAACTACAAGTGTCACTGTCCGACGTTGATGTGTGTCAGACCCCAAACACACCTTCAATCAGAAGTTTCGGTGCTACATAGTTCCTCGGCAATGTTTGCACCATCCTAGTCTCCTTTTATTGTGATCTTCAATGCCAAGTTGATAAGATTATAGGTAGATATTTTGGAGACTAGTTACTTCACTTACGAGCAGACCTCTATTTACAGAACTCTCATAATGCCAAAAAGGGAAAAGGAAAATGAAGGATAGCAATAGTGTCTTTAAATAGAGACAGAATCCCCCACCTGATCTCATACCTCTTCAAATCATATAAATTCTACTATCCTATTTCTCACTCACTTGTTTCTTCCTCCTAACATAAACTTTGGCAAGCAGCGTTTCAATAATCTTCTTAGAACTACACTAGATTTCATATTTTACAAGTATTTTCACAGCATTCGTTATAATACCATTCTTATCACTTCAGGAGCAAGGTATAAGATTCTTATGAAATCAATCTTTAAAGTAATAATTTAAATGTGTTGTGCTACTATTGACCTTGTTAAAATAATAGGGTTTTAGATGAGGAGGGAACAGAAAAAATAGATTGAATTGTGGAGTAGATTTCCCAGACTTTCAACCTTGAGGAAAAGGTTCTTTTGGAAGATGGCAGTACTGTTAGCTCCCACCTCAATATCGTTAAACCTCTGAGTCTATACCTAATGTTCATAATGTCAAGTTAGAAAGAGTTACTATATATTATATAAATGCTCAATGTATGTTGCATGTTCTAGGAATGTGTGCCTATCACACTCAAAACTATACTGATAGAACTCTCCACTTCTTTTGCGAAATGGAGATGATCCCTACTCAGTTAGAAATAGCTCATAACGGCAGCCAACTAGGGTTGGCCCAAAACTTTATTTTGGTATGTAGTTAATTAGGAAACTTATTATTACAAGTAATGCGGAGCAGATTTTGGATGTTTTTGAGATTCAGAAACCTAGTGCATTGATTATGCTTTGAGTTTCTATTCTTTTCTTCTAATTAATAAAGTCTTGGTGACGTGGTGAGAGCAAGTAAACGTGCGTTGAGTGTGAAGATACGAGTTGTAGCTTTTGGATGTATGGGAGTTGACATCGTGGAAACTGATGTTTTTACATACACATTTGTTATGTTCCAGCTGGCAGCAGAAACTAGATAAACAGAATATGTAATTATAGAATAGAATGTATTCTCTAGAATAGATTTTCATCAATTTTCACGACATGTAATTTGTAAATAGATTAACTATTTCAAACCTCTGGCCGCAACAGGGTTTCAGAAGAACCAGTGCAAATCTATTGGAGCCACAAGCACTCTATCTTCACTCGGTAATATATATTCCCCATATTTAATTTCTTTTTGAAAAGAAATTTGCGAGTATGTTAGTGATAGACATTTTATAGATTTACTTTAATGAATTGAGCAGGTTTTGACTCATCGTTCGGGATCACCTGCAATGCTGTCACTTATATACTCAGAAATTCTAAAAATGCTTCGTTTATGGGGCCTTTTGTATTTTGATGCTGAAATTTTCTACCCTCATGATATTTTTAATGTTCCGAAAGGCTATCATAAGCTGAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAATCTATTGGTTGAGGTAATGTCTTATTACTTGCTCTTCTTTCATTTCCACTACCTGGTATCTTCTCAACTAAAATACAAAATTATGTGTATATTTTTTCTAGTTTTGGCATAAAATGTGCATCTGTGCCATAAGAAGTATAAGTGCTCCCGATCAAGCATTGTTGTTGAGTGACTCTTAAAATTTGGGTGGACATAACTCAATCCTACAAAACCGGTTTATAAGATGAGGGAGTCTTCTACATTGTGCAATTCTAAGCACATCCTTCACGCTCAGGACTGGACATTTAGAGTTTGACTCGATGACCCAACGGGTCTTGCCATCTTAAAAATTGGGTTGAGCCTAACTCAACCCTACAAAACCGATTGGTAAGATAAGGGATTCTTAGCTGTGACCGTATTTCACACCTAGGATCTTAGTGGAAAACAAACACCACATAGAACTCACAATAATTTACGTGGTTCGGGACCTCTTGCCTTCGTCCACAGGAGCATGCACCTTGGTTTATTAATTAGGATAATTGTAACTATTATTAATAAATTGCAGAATCAATGTTTATATGACAGTTGCAGAATCAGCCTCACAGCTTGTAAGTAAATTGTATTTATATGAGAATATTCCAAGAGGATAACAATGTTATCAAACCTCTGAGTTTGATAATATATTCTGCCATATCTGTTTTAGTTTTCCTTTAGCACTCATGTTAAGTCTATATCTGCAGATATTAAATAATCTGAAGCATGCATTCTGGCCTTTTCATCATGATCATACAAAAACCTTATTTTTAAGGGCAGCACATGCTGCAAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGGTACTTTTTATTATGTCTTTCCTATTTTCTATTTATTTTAATGTAATTAGTTTATGTAAGAACTTGTCTTAAAGTTTGTCAACGGCAGTGGCTCTGAAATTGCATCAGCTAAGGCTGCTCAACATAGACTGGATCGAGGAGTTTGGACCACTGTGCGCTTTGGCGACATGAGGCGTTCATTGTCTGGTATGAATTTGATTCAGTTTATCTCTCTTGTTTCTCAATACTGTAATGCCATTGTCAAACTTCTGATATTTCATTATGATCACAAATATTTCACCTATTCTTTCAGCATGTGAACGCCTTATCCTCGTTACAAATGATCCAAATGAGCTAAGAGATTACAGCATTCTCCTCTATCATTGTGGATTATACGAGGAGTCGCTACAATACCTGACGAAGTACCAGGAACATAAGGTACTATAACAATCCTATACAATGCATGAATGATATATTTTTTCCAGATTTGGATCATGTGCAGTAACTGCATCATGCAGTTTTCAATTTCCATCAACAACCAAGATTGTTTAATGTGAATTCTATGTAATTTGATTCATCCGAGATCACTTACTGCGTGAAACATCGTGGAAATACTACTGCAGGAAATCCTGGTCCCTTCTTTCCAAATAAACTGAATGTGATGTGTACCATTCATTTTTGCAGAACTCGTCTACACAAGTGCTGACATCATCAACCTCTGAAAGTGACATGGAAGAAGATGCTGCCGTCGATAAACTAATAACGCGATTGAATCTCATCCAGTTGGAGCAAGGATGGAGTCAGCCGTCCGTTGCTAGAAAGTTTCTCGGTAATAACTCTGATCCATGGTAG

Protein sequence

>MS.gene98750.t1

MSSVSSSSLPTTSFFSTFSKFQFCPPSFSYSSPRVICHGGSNVQHAATDLKFFLHDALDASGIDTAHAREAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVARLDDLSMDYCPHYTPSYDSSPEKFLESIERFLYVHKGFRRTSANLLEPQALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMTSGNLLVEILNNLKHAFWPFHHDHTKTLFLRAAHAANCVDRSDFVGESGSEIASAKAAQHRLDRGVWTTVRFGDMRRSLSACERLILVTNDPNELRDYSILLYHCGLYEESLQYLTKYQEHKNSSTQVLTSSTSESDMEEDAAVDKLITRLNLIQLEQGWSQPSVARKFLGNNSDPW