AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001009.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001009.01.T01 MTR_1g029000 95.918 343 14 0 1 343 1 343 0.0 677
MsG0180001009.01.T01 MTR_1g029000 93.852 244 14 1 1 244 1 243 1.80e-165 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001009.01.T01 AT1G21370 66.957 345 103 6 5 343 3 342 7.68e-166 466
MsG0180001009.01.T01 AT1G21370 66.957 345 103 6 5 343 3 342 7.68e-166 466

Find 81 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAATCGAAATCGGATTT+TGG 0.097582 1:-14531395 None:intergenic
CTGAACAAAGGTTCAATTTC+TGG 0.136474 1:-14536044 None:intergenic
GAAAGAGGATTCGTGGTATT+TGG 0.173898 1:+14531724 MsG0180001009.01.T01:CDS
TGTAAGGTTATTAAAATTCT+TGG 0.252427 1:+14536320 MsG0180001009.01.T01:three_prime_UTR
GCAAAAGAAGCTGCTTTAAA+AGG 0.276996 1:+14535903 MsG0180001009.01.T01:CDS
TTACTACTATCTTTAACTTT+TGG 0.282386 1:+14531542 MsG0180001009.01.T01:CDS
CACGGGAGTGCACCAGGATA+TGG 0.294204 1:-14536083 None:intergenic
TGAGAAATTGTTCATTGTTT+TGG 0.297858 1:-14531336 None:intergenic
TCCGATTTCGATTTAGAATC+TGG 0.306055 1:+14531401 MsG0180001009.01.T01:CDS
ATGAAACTGTTGTTACATAT+TGG 0.307070 1:+14536264 MsG0180001009.01.T01:three_prime_UTR
AAGAATTTGGTTATGGTTGC+TGG 0.319232 1:+14531662 MsG0180001009.01.T01:CDS
GGAGTGAGGCGCAGAGTTAT+TGG 0.328099 1:+14531882 MsG0180001009.01.T01:CDS
TGTCGGTTCCGAGAGCTTAC+TGG 0.336134 1:+14533400 MsG0180001009.01.T01:CDS
CGCTCAATTCCGTATCCTAA+TGG 0.336584 1:+14536017 MsG0180001009.01.T01:CDS
TGCTTTAAAAGGCGAGGAAT+TGG 0.340117 1:+14535914 MsG0180001009.01.T01:CDS
AGGAGTTGGGATTGTTGATA+AGG 0.365777 1:+14531802 MsG0180001009.01.T01:CDS
TCAATTTCTGGACATCCATT+AGG 0.366174 1:-14536032 None:intergenic
GAAGCTGAAGAATTTGGTTA+TGG 0.374590 1:+14531655 MsG0180001009.01.T01:CDS
AAGCGATGCAATGGAATCAT+TGG 0.393762 1:-14531309 None:intergenic
TTGTGAGAAGATTGAGAAAG+AGG 0.399905 1:+14531709 MsG0180001009.01.T01:CDS
GAGTGAGGCGCAGAGTTATT+GGG 0.409514 1:+14531883 MsG0180001009.01.T01:CDS
GTATGCGGGGAAAGATTTGT+AGG 0.414428 1:-14531372 None:intergenic
CAGTTACGCGAAAACTGATC+TGG 0.416470 1:+14531610 MsG0180001009.01.T01:CDS
GGTTCGTTTGATTGTGGTTG+TGG 0.417620 1:-14531429 None:intergenic
ACTATTCATGCAACATTAAG+TGG 0.418129 1:-14536178 None:intergenic
AGCATATTGAGGAAGGAGTT+GGG 0.423129 1:+14531789 MsG0180001009.01.T01:CDS
GCCAGATTCTAAATCGAAAT+CGG 0.423692 1:-14531402 None:intergenic
CGAGGAAAGACGCGGGGCCG+AGG 0.441720 1:+14531861 MsG0180001009.01.T01:CDS
GTTCGTTTGATTGTGGTTGT+GGG 0.446381 1:-14531428 None:intergenic
GTAAGGAAGAAAGTGTGAAA+TGG 0.452628 1:+14533320 MsG0180001009.01.T01:CDS
TACGGAATTGAGCGATGAAA+AGG 0.457123 1:-14536008 None:intergenic
TGTGAAATGGAGAGCACTTA+CGG 0.479325 1:+14533333 MsG0180001009.01.T01:CDS
ATCTTCTATTTAGTGTCTGT+CGG 0.488169 1:+14533383 MsG0180001009.01.T01:CDS
AAGCATATTGAGGAAGGAGT+TGG 0.489403 1:+14531788 MsG0180001009.01.T01:CDS
ATTGTTGATAAGGATGAGAA+GGG 0.491767 1:+14531812 MsG0180001009.01.T01:CDS
CGATTGGCTTTCCAGAGTCA+AGG 0.498519 1:+14535847 MsG0180001009.01.T01:CDS
TGTGGACCAGCTCCATATCC+TGG 0.503421 1:+14536071 MsG0180001009.01.T01:CDS
GATTGTTGATAAGGATGAGA+AGG 0.503975 1:+14531811 MsG0180001009.01.T01:CDS
AGATTGAGAAAGAGGATTCG+TGG 0.506178 1:+14531717 MsG0180001009.01.T01:CDS
AAATTCTTCAGCTTCGAAAA+CGG 0.506817 1:-14531647 None:intergenic
GAGAGTTATCAGAAGAATCC+TGG 0.509383 1:+14531746 MsG0180001009.01.T01:CDS
CATATCCTGGTGCACTCCCG+TGG 0.512136 1:+14536084 MsG0180001009.01.T01:CDS
TTATCAGAAGAATCCTGGTC+AGG 0.520509 1:+14531751 MsG0180001009.01.T01:CDS
TCTGGACATCCATTAGGATA+CGG 0.527516 1:-14536026 None:intergenic
AATCTACATCGATCTGCGAT+TGG 0.533049 1:+14535831 MsG0180001009.01.T01:CDS
GAGTCAAGGTTCTTCTACGC+TGG 0.538718 1:+14535861 MsG0180001009.01.T01:CDS
TAACTCTGCGCCTCACTCCT+CGG 0.545516 1:-14531878 None:intergenic
TGCAAGAGAAGCTACATGGA+AGG 0.553138 1:-14531271 None:intergenic
CACTCCCGTGGGCATAGTAG+TGG 0.555298 1:+14536096 MsG0180001009.01.T01:exon
TATGCCCACGGGAGTGCACC+AGG 0.560758 1:-14536089 None:intergenic
AGACGCGGGGCCGAGGAGTG+AGG 0.561580 1:+14531868 MsG0180001009.01.T01:CDS
CATTCGATTTATACGAGCAG+TGG 0.566831 1:+14531686 MsG0180001009.01.T01:CDS
ACGGAATTGAGCGATGAAAA+GGG 0.567802 1:-14536007 None:intergenic
GCGTAGAAGAACCTTGACTC+TGG 0.574118 1:-14535858 None:intergenic
AGTGAACCTCGGCATCCGAA+CGG 0.576879 1:-14535960 None:intergenic
TACGTTTGTGAAGCATATTG+AGG 0.581660 1:+14531778 MsG0180001009.01.T01:CDS
AACCACCACTACTATGCCCA+CGG 0.585593 1:-14536101 None:intergenic
ACAAACGTAGCAGCCTGACC+AGG 0.587052 1:-14531764 None:intergenic
TTTGTGAAGCATATTGAGGA+AGG 0.587362 1:+14531782 MsG0180001009.01.T01:CDS
TCCCGTGGGCATAGTAGTGG+TGG 0.590022 1:+14536099 MsG0180001009.01.T01:exon
GATAGGTGCCAGTAAGCTCT+CGG 0.590265 1:-14533408 None:intergenic
AGTGCACCAGGATATGGAGC+TGG 0.590998 1:-14536077 None:intergenic
CACTTACGGAAGAACATGCA+AGG 0.592734 1:+14533347 MsG0180001009.01.T01:CDS
GAACCTTTGTTCAGATACTG+TGG 0.593101 1:+14536053 MsG0180001009.01.T01:CDS
TTTGGTTTGAAGCGATGCAA+TGG 0.593695 1:-14531318 None:intergenic
CAATTCTCAAGAGATCCGTT+CGG 0.594048 1:+14535945 MsG0180001009.01.T01:CDS
AGTTACGCGAAAACTGATCT+GGG 0.595968 1:+14531611 MsG0180001009.01.T01:CDS
AGTAGTAAAATAGCTACGAA+AGG 0.602832 1:-14531527 None:intergenic
AGAGATCCGTTCGGATGCCG+AGG 0.610798 1:+14535954 MsG0180001009.01.T01:CDS
TGTTTAGTGGTGGTGAGACG+AGG 0.615572 1:+14531843 MsG0180001009.01.T01:CDS
AGAAGCTGCTTTAAAAGGCG+AGG 0.624803 1:+14535908 MsG0180001009.01.T01:CDS
TTTCGCGTAACTGTTCAACT+GGG 0.632505 1:-14531600 None:intergenic
ACCACCACTACTATGCCCAC+GGG 0.633137 1:-14536100 None:intergenic
ATATCCTGGTGCACTCCCGT+GGG 0.633994 1:+14536085 MsG0180001009.01.T01:CDS
GGTGAGACGAGGAAAGACGC+GGG 0.645521 1:+14531854 MsG0180001009.01.T01:CDS
TGGTGAGACGAGGAAAGACG+CGG 0.648676 1:+14531853 MsG0180001009.01.T01:CDS
GGTCCACAGTATCTGAACAA+AGG 0.677767 1:-14536056 None:intergenic
ACTTACGGAAGAACATGCAA+GGG 0.692844 1:+14533348 MsG0180001009.01.T01:CDS
GTGAGACGAGGAAAGACGCG+GGG 0.694941 1:+14531855 MsG0180001009.01.T01:CDS
GCAATGGAATCATTGGATCG+CGG 0.698430 1:-14531302 None:intergenic
AGTGTACACTAAAAGCATAG+AGG 0.704692 1:+14536138 MsG0180001009.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATCAAAATAAAAAAA+TGG + Chr1:14533829-14533848 MsG0180001009.01.T01:intron 10.0%
!! TATAATTATAAATTGAATGA+TGG + Chr1:14535711-14535730 MsG0180001009.01.T01:intron 10.0%
!! AAATATTCAATAATTTCCAA+GGG + Chr1:14533738-14533757 MsG0180001009.01.T01:intron 15.0%
!! ATTAACTAGTAATACTTAAT+AGG + Chr1:14534837-14534856 MsG0180001009.01.T01:intron 15.0%
!! CCATAATCAAATTAAAAAAA+TGG - Chr1:14532414-14532433 None:intergenic 15.0%
!! GAAAATAAATAAAAAAACAG+AGG + Chr1:14533928-14533947 MsG0180001009.01.T01:intron 15.0%
!! TAAAATAGGAAATAATGAAA+TGG - Chr1:14532732-14532751 None:intergenic 15.0%
!! TTAACTAGTAATACTTAATA+GGG + Chr1:14534838-14534857 MsG0180001009.01.T01:intron 15.0%
!!! AAATAAATGTTTTCTTGATA+TGG + Chr1:14532237-14532256 MsG0180001009.01.T01:intron 15.0%
!!! CCATTTTTTTAATTTGATTA+TGG + Chr1:14532411-14532430 MsG0180001009.01.T01:intron 15.0%
!!! GAAATAGAAAGAATATTTTT+TGG + Chr1:14532689-14532708 MsG0180001009.01.T01:intron 15.0%
!!! TTCTTTCTTTTAATTAACTT+TGG - Chr1:14533519-14533538 None:intergenic 15.0%
!! AAGGATGAAATTTGAAAAAA+TGG - Chr1:14531511-14531530 None:intergenic 20.0%
!! ACAAAAATGTGTTTATACAA+AGG - Chr1:14533489-14533508 None:intergenic 20.0%
!! AGAAAAATAAAAACATACAG+TGG + Chr1:14533952-14533971 MsG0180001009.01.T01:intron 20.0%
!! ATCAAAATAAAAAAATGGAG+AGG + Chr1:14533834-14533853 MsG0180001009.01.T01:intron 20.0%
!! ATGCTTACATTACATAAAAT+AGG - Chr1:14532746-14532765 None:intergenic 20.0%
!! GAAAAATAAAAACATACAGT+GGG + Chr1:14533953-14533972 MsG0180001009.01.T01:intron 20.0%
!! GAAATATTCAATAATTTCCA+AGG + Chr1:14533737-14533756 MsG0180001009.01.T01:intron 20.0%
!! GAATAAAATGAAATAGATTG+AGG + Chr1:14532590-14532609 MsG0180001009.01.T01:intron 20.0%
!! TGTAAGGTTATTAAAATTCT+TGG + Chr1:14536320-14536339 MsG0180001009.01.T01:three_prime_UTR 20.0%
!!! AAAGTTTTAAATTTAGGTTG+TGG + Chr1:14532281-14532300 MsG0180001009.01.T01:intron 20.0%
!!! ATAATTAGATTTAGCTCAAT+CGG + Chr1:14533162-14533181 MsG0180001009.01.T01:intron 20.0%
!!! ATAGAAAGAATATTTTTTGG+CGG + Chr1:14532692-14532711 MsG0180001009.01.T01:intron 20.0%
!!! ATATCTTATAGTCATTGTTT+TGG + Chr1:14531946-14531965 MsG0180001009.01.T01:intron 20.0%
!!! ATGTTAAGTTTTTTGTTTTG+AGG + Chr1:14535658-14535677 MsG0180001009.01.T01:intron 20.0%
!!! ATTTTTTGAGCATTTTGAAA+AGG - Chr1:14531484-14531503 None:intergenic 20.0%
!!! GAATGATACTATTTCTATAA+AGG - Chr1:14533281-14533300 None:intergenic 20.0%
!!! GCAGTTAAAGTTTTAAATTT+AGG + Chr1:14532275-14532294 MsG0180001009.01.T01:intron 20.0%
!!! TCTAATTATTTTGAAGTTGT+AGG - Chr1:14533151-14533170 None:intergenic 20.0%
!!! TTACATACAGTAATATTTTG+AGG - Chr1:14533433-14533452 None:intergenic 20.0%
!!! TTACTACTATCTTTAACTTT+TGG + Chr1:14531542-14531561 MsG0180001009.01.T01:CDS 20.0%
!!! TTCATCATTTTGTTTCATTA+CGG + Chr1:14533073-14533092 MsG0180001009.01.T01:intron 20.0%
!!! TTTGTATAAACACATTTTTG+TGG + Chr1:14533488-14533507 MsG0180001009.01.T01:intron 20.0%
!!! TTTTATGACAGGATAAAAAA+TGG + Chr1:14532639-14532658 MsG0180001009.01.T01:intron 20.0%
!!! TTTTGAAGTTTACTGTTAAA+TGG + Chr1:14531983-14532002 MsG0180001009.01.T01:intron 20.0%
! AGAAATAGTATCATTCTCTT+GGG + Chr1:14533285-14533304 MsG0180001009.01.T01:intron 25.0%
! AGAGAAATAAGAAAAACAGA+GGG + Chr1:14533803-14533822 MsG0180001009.01.T01:intron 25.0%
! ATCCATATCAGTAATAAACA+GGG - Chr1:14533216-14533235 None:intergenic 25.0%
! ATGAAACTGTTGTTACATAT+TGG + Chr1:14536264-14536283 MsG0180001009.01.T01:three_prime_UTR 25.0%
! ATGACAGATGTTATACAATT+AGG + Chr1:14532176-14532195 MsG0180001009.01.T01:intron 25.0%
! ATTTGATTATGGTTACATTG+TGG + Chr1:14532422-14532441 MsG0180001009.01.T01:intron 25.0%
! GATGAAATTTGAAAAAATGG+TGG - Chr1:14531508-14531527 None:intergenic 25.0%
! TAGAAATAGTATCATTCTCT+TGG + Chr1:14533284-14533303 MsG0180001009.01.T01:intron 25.0%
! TATCCATATCAGTAATAAAC+AGG - Chr1:14533217-14533236 None:intergenic 25.0%
! TGAGGAAAAGAAATAAGATT+GGG + Chr1:14535429-14535448 MsG0180001009.01.T01:intron 25.0%
! TTATATTGATGCATGATACT+TGG - Chr1:14535696-14535715 None:intergenic 25.0%
! TTCACATGACATATATGTAT+CGG - Chr1:14535030-14535049 None:intergenic 25.0%
! TTGCAATATGATTTAGAGAA+GGG + Chr1:14534893-14534912 MsG0180001009.01.T01:intron 25.0%
! TTTACATGACATATGTGTAT+CGG - Chr1:14535259-14535278 None:intergenic 25.0%
! TTTATCTCATACTCTTAAGT+TGG + Chr1:14532663-14532682 MsG0180001009.01.T01:intron 25.0%
! TTTGCAATATGATTTAGAGA+AGG + Chr1:14534892-14534911 MsG0180001009.01.T01:intron 25.0%
!! ATAAAAAGCATAACAGAGAA+AGG + Chr1:14533906-14533925 MsG0180001009.01.T01:intron 25.0%
!! TGAGAAATTGTTCATTGTTT+TGG - Chr1:14531339-14531358 None:intergenic 25.0%
!! TGTCTGTCAAAATTTTTGTA+AGG + Chr1:14536304-14536323 MsG0180001009.01.T01:three_prime_UTR 25.0%
!! TGTTTTCTTGATATGGTTTT+AGG + Chr1:14532244-14532263 MsG0180001009.01.T01:intron 25.0%
!! TTTTCTGACATGTCAATAAT+AGG - Chr1:14534926-14534945 None:intergenic 25.0%
!!! ATAGCAAAGGTTTTAAGTAA+AGG - Chr1:14532493-14532512 None:intergenic 25.0%
!!! ATTTTGAAAAGGTGGAAAAT+TGG - Chr1:14531473-14531492 None:intergenic 25.0%
!!! GCTACTATTTGATCATTTTT+TGG + Chr1:14533638-14533657 MsG0180001009.01.T01:intron 25.0%
!!! TACAGTAATATTTTGAGGAT+AGG - Chr1:14533428-14533447 None:intergenic 25.0%
!!! TATGACTTTTATTTTTCCCT+TGG - Chr1:14533757-14533776 None:intergenic 25.0%
!!! TATTCTGATTTGCTAAATCT+GGG + Chr1:14535766-14535785 MsG0180001009.01.T01:intron 25.0%
!!! TCATTTTTTGGACAAATACA+TGG + Chr1:14533650-14533669 MsG0180001009.01.T01:intron 25.0%
!!! TGATTGGATATTTTTATGAC+AGG + Chr1:14532628-14532647 MsG0180001009.01.T01:intron 25.0%
!!! TTATTCTGATTTGCTAAATC+TGG + Chr1:14535765-14535784 MsG0180001009.01.T01:intron 25.0%
AAATTCTTCAGCTTCGAAAA+CGG - Chr1:14531650-14531669 None:intergenic 30.0%
AAATTGCAGAAAAGAAAGTG+CGG + Chr1:14534808-14534827 MsG0180001009.01.T01:intron 30.0%
AACAAAGACAAACAATGCAA+CGG - Chr1:14533191-14533210 None:intergenic 30.0%
ACGAAAAGATTGAAGTAGAA+TGG - Chr1:14532791-14532810 None:intergenic 30.0%
ACTATTCATGCAACATTAAG+TGG - Chr1:14536181-14536200 None:intergenic 30.0%
ACTGCTAATGTAAAAAACAC+AGG + Chr1:14535001-14535020 MsG0180001009.01.T01:intron 30.0%
AGTAGTAAAATAGCTACGAA+AGG - Chr1:14531530-14531549 None:intergenic 30.0%
ATCGATAAAATTACTAGCGA+TGG + Chr1:14532115-14532134 MsG0180001009.01.T01:intron 30.0%
ATCTTCTATTTAGTGTCTGT+CGG + Chr1:14533383-14533402 MsG0180001009.01.T01:CDS 30.0%
CAAATGTTCCAACAAAATCA+CGG - Chr1:14532381-14532400 None:intergenic 30.0%
CATTGAATAACTGATGTATC+TGG + Chr1:14534691-14534710 MsG0180001009.01.T01:intron 30.0%
CTACATTCCTAAAACTGTTA+TGG - Chr1:14532881-14532900 None:intergenic 30.0%
GAAAATTAAGGGAAAGTGAT+AGG + Chr1:14534160-14534179 MsG0180001009.01.T01:intron 30.0%
GAGAGAAATAAGAAAAACAG+AGG + Chr1:14533802-14533821 MsG0180001009.01.T01:intron 30.0%
GATTCAATAGTAGTATGGAA+CGG + Chr1:14535634-14535653 MsG0180001009.01.T01:intron 30.0%
GCTACTATCATTCTATTGAT+TGG + Chr1:14532612-14532631 MsG0180001009.01.T01:intron 30.0%
GTAAGAGAGAAAAACGAAAA+GGG - Chr1:14531573-14531592 None:intergenic 30.0%
GTACAATCAGTCAAATATCT+AGG - Chr1:14532836-14532855 None:intergenic 30.0%
GTGAATTGTCTCCAATAATA+AGG - Chr1:14534661-14534680 None:intergenic 30.0%
GTGAGGAAAAGAAATAAGAT+TGG + Chr1:14535428-14535447 MsG0180001009.01.T01:intron 30.0%
GTGTATTATGCACTTTATGT+CGG + Chr1:14532915-14532934 MsG0180001009.01.T01:intron 30.0%
TAAAATATGTGGCCATACTT+AGG + Chr1:14533550-14533569 MsG0180001009.01.T01:intron 30.0%
TCTATAAAGGCAGTTTATGT+GGG - Chr1:14533268-14533287 None:intergenic 30.0%
TCTCTTTAACAACATAGCAA+AGG - Chr1:14532506-14532525 None:intergenic 30.0%
TGATAAAAGAACATCAAGCA+TGG + Chr1:14532971-14532990 MsG0180001009.01.T01:intron 30.0%
TGATATGGATAACATGAAAG+TGG + Chr1:14533226-14533245 MsG0180001009.01.T01:intron 30.0%
TGTAAGAGAGAAAAACGAAA+AGG - Chr1:14531574-14531593 None:intergenic 30.0%
TGTTGGAACATTTGTGATAT+GGG + Chr1:14532387-14532406 MsG0180001009.01.T01:intron 30.0%
TTCCCTGTTTATTACTGATA+TGG + Chr1:14533211-14533230 MsG0180001009.01.T01:intron 30.0%
TTCTATAAAGGCAGTTTATG+TGG - Chr1:14533269-14533288 None:intergenic 30.0%
TTGTTGGAACATTTGTGATA+TGG + Chr1:14532386-14532405 MsG0180001009.01.T01:intron 30.0%
TTTCTATACGTAAATGTCTG+AGG + Chr1:14532009-14532028 MsG0180001009.01.T01:intron 30.0%
! ATAAAGAACCGTGATTTTGT+TGG + Chr1:14532370-14532389 MsG0180001009.01.T01:intron 30.0%
! ATTGTTGATAAGGATGAGAA+GGG + Chr1:14531812-14531831 MsG0180001009.01.T01:CDS 30.0%
! CTAAATCGAAATCGGATTTT+GGG - Chr1:14531397-14531416 None:intergenic 30.0%
! TCAATTCATGTCAATTTGCT+TGG + Chr1:14532810-14532829 MsG0180001009.01.T01:intron 30.0%
! TCTAAATCGAAATCGGATTT+TGG - Chr1:14531398-14531417 None:intergenic 30.0%
! TGCAGTTTGAGATACATATA+CGG - Chr1:14535155-14535174 None:intergenic 30.0%
! TGGAAAATTGGTGAGTTTTT+GGG - Chr1:14531461-14531480 None:intergenic 30.0%
!! TCAGATTTTAAGGGCTAAAA+TGG + Chr1:14534258-14534277 MsG0180001009.01.T01:intron 30.0%
!! TTTTGAGCATTTTGAAAAGG+TGG - Chr1:14531481-14531500 None:intergenic 30.0%
!!! AAGAATATTTTTTGGCGGAA+TGG + Chr1:14532697-14532716 MsG0180001009.01.T01:intron 30.0%
!!! CACATTTTGAGATACATAGA+CGG - Chr1:14535387-14535406 None:intergenic 30.0%
!!! TTGGAGACAATTCACTTTTT+AGG + Chr1:14534666-14534685 MsG0180001009.01.T01:intron 30.0%
AAAATGTGAGGAAGGAAATC+TGG + Chr1:14533977-14533996 MsG0180001009.01.T01:intron 35.0%
AAATGGAGAGGAAGAAAAAC+TGG + Chr1:14533846-14533865 MsG0180001009.01.T01:intron 35.0%
AAGAATTTGGTTATGGTTGC+TGG + Chr1:14531662-14531681 MsG0180001009.01.T01:CDS 35.0%
AATGGAGAGGAAGAAAAACT+GGG + Chr1:14533847-14533866 MsG0180001009.01.T01:intron 35.0%
ACTATTGAATCAGCAGTAAG+TGG - Chr1:14535625-14535644 None:intergenic 35.0%
AGCAAATACCATAACAGAGA+GGG + Chr1:14533776-14533795 MsG0180001009.01.T01:intron 35.0%
ATTACTAGCGATGGACATTA+AGG + Chr1:14532124-14532143 MsG0180001009.01.T01:intron 35.0%
CATCTAAATACAAGCTCGAT+TGG - Chr1:14533009-14533028 None:intergenic 35.0%
CTACCTCTGTTCCTTATTAT+TGG + Chr1:14534647-14534666 MsG0180001009.01.T01:intron 35.0%
CTGAACAAAGGTTCAATTTC+TGG - Chr1:14536047-14536066 None:intergenic 35.0%
CTGAGAATCTGATATTGTGA+TGG - Chr1:14534470-14534489 None:intergenic 35.0%
CTTCAGAACTCACAAAAGTA+AGG - Chr1:14533457-14533476 None:intergenic 35.0%
GAAGCTGAAGAATTTGGTTA+TGG + Chr1:14531655-14531674 MsG0180001009.01.T01:CDS 35.0%
GAGATATGCTCAGAACTAAT+TGG + Chr1:14534508-14534527 MsG0180001009.01.T01:intron 35.0%
GCCAGATTCTAAATCGAAAT+CGG - Chr1:14531405-14531424 None:intergenic 35.0%
GTTGTGATTGCAATCATGTT+AGG + Chr1:14532337-14532356 MsG0180001009.01.T01:intron 35.0%
TACGTTTGTGAAGCATATTG+AGG + Chr1:14531778-14531797 MsG0180001009.01.T01:CDS 35.0%
TAGCAAATACCATAACAGAG+AGG + Chr1:14533775-14533794 MsG0180001009.01.T01:intron 35.0%
TCTCCAATAATAAGGAACAG+AGG - Chr1:14534653-14534672 None:intergenic 35.0%
TGCACAGAATGTTGTATTCT+CGG + Chr1:14534325-14534344 MsG0180001009.01.T01:intron 35.0%
TGCACAGGGAAGAAAATTAA+GGG + Chr1:14534149-14534168 MsG0180001009.01.T01:intron 35.0%
TGGAAACAGAGGAACTAAAA+CGG + Chr1:14534006-14534025 MsG0180001009.01.T01:intron 35.0%
TTGTGAGAAGATTGAGAAAG+AGG + Chr1:14531709-14531728 MsG0180001009.01.T01:CDS 35.0%
TTTGTGAAGCATATTGAGGA+AGG + Chr1:14531782-14531801 MsG0180001009.01.T01:CDS 35.0%
! AGTGTACACTAAAAGCATAG+AGG + Chr1:14536138-14536157 MsG0180001009.01.T01:three_prime_UTR 35.0%
! AGTTTGAGATACATATACGG+AGG - Chr1:14535152-14535171 None:intergenic 35.0%
! ATGCTTGCCATAACAGTTTT+AGG + Chr1:14532871-14532890 MsG0180001009.01.T01:intron 35.0%
! ATTGTGATGGAACAACAGAA+TGG - Chr1:14534457-14534476 None:intergenic 35.0%
! ATTTGCTAAATCTGGGAATC+AGG + Chr1:14535773-14535792 MsG0180001009.01.T01:intron 35.0%
! CAGACTGCAATTTAAGACTA+TGG + Chr1:14532545-14532564 MsG0180001009.01.T01:intron 35.0%
! GATTGTTGATAAGGATGAGA+AGG + Chr1:14531811-14531830 MsG0180001009.01.T01:CDS 35.0%
! GCAAAAGAAGCTGCTTTAAA+AGG + Chr1:14535903-14535922 MsG0180001009.01.T01:CDS 35.0%
! GTAAGGAAGAAAGTGTGAAA+TGG + Chr1:14533320-14533339 MsG0180001009.01.T01:CDS 35.0%
! GTGGAAAATTGGTGAGTTTT+TGG - Chr1:14531462-14531481 None:intergenic 35.0%
! GTTTTCGAAGCTGAAGAATT+TGG + Chr1:14531649-14531668 MsG0180001009.01.T01:CDS 35.0%
! TCAAGGGACTCAGATTTTAA+GGG + Chr1:14534249-14534268 MsG0180001009.01.T01:intron 35.0%
! TCAATTTCTGGACATCCATT+AGG - Chr1:14536035-14536054 None:intergenic 35.0%
! TCCGATTTCGATTTAGAATC+TGG + Chr1:14531401-14531420 MsG0180001009.01.T01:CDS 35.0%
! TGTCTTTGATATTTCTGCCT+CGG + Chr1:14534615-14534634 MsG0180001009.01.T01:intron 35.0%
! TTTTGTGATAGAGTGAACCT+CGG - Chr1:14535974-14535993 None:intergenic 35.0%
! TTTTTGCAAGAGAAGCTACA+TGG - Chr1:14531278-14531297 None:intergenic 35.0%
!! AAGGGTTTGCTTTTGTTTAG+TGG + Chr1:14531830-14531849 MsG0180001009.01.T01:CDS 35.0%
!! ATCTCATACTCTTAAGTTGG+AGG + Chr1:14532666-14532685 MsG0180001009.01.T01:intron 35.0%
!! CTGCTGATTCAATAGTAGTA+TGG + Chr1:14535629-14535648 MsG0180001009.01.T01:intron 35.0%
!! GCTGATTTTAAAGGATGGTT+TGG + Chr1:14531911-14531930 MsG0180001009.01.T01:CDS 35.0%
!! TATACGCTATCCCACTTTTA+TGG - Chr1:14533610-14533629 None:intergenic 35.0%
!! TCTCATACTCTTAAGTTGGA+GGG + Chr1:14532667-14532686 MsG0180001009.01.T01:intron 35.0%
!!! ATTTTGAGATACATAGACGG+AGG - Chr1:14535384-14535403 None:intergenic 35.0%
!!! CAGGAGACAATTCACTTTTT+AGG - Chr1:14534756-14534775 None:intergenic 35.0%
!!! CTGTTGCTGATTTTAAAGGA+TGG + Chr1:14531906-14531925 MsG0180001009.01.T01:CDS 35.0%
!!! TTTTCTGGTTCGTTTGATTG+TGG - Chr1:14531438-14531457 None:intergenic 35.0%
AAGAAGAAAGGTTTGTGCAC+AGG + Chr1:14534134-14534153 MsG0180001009.01.T01:intron 40.0%
AAGCATATTGAGGAAGGAGT+TGG + Chr1:14531788-14531807 MsG0180001009.01.T01:CDS 40.0%
AAGCGATGCAATGGAATCAT+TGG - Chr1:14531312-14531331 None:intergenic 40.0%
AATCTACATCGATCTGCGAT+TGG + Chr1:14535831-14535850 MsG0180001009.01.T01:CDS 40.0%
ACGGAATTGAGCGATGAAAA+GGG - Chr1:14536010-14536029 None:intergenic 40.0%
ACTTACGGAAGAACATGCAA+GGG + Chr1:14533348-14533367 MsG0180001009.01.T01:CDS 40.0%
AGAAGAAAGGTTTGTGCACA+GGG + Chr1:14534135-14534154 MsG0180001009.01.T01:intron 40.0%
AGAGGTAGTATTTAGTACCG+AGG - Chr1:14534635-14534654 None:intergenic 40.0%
AGATTGAGAAAGAGGATTCG+TGG + Chr1:14531717-14531736 MsG0180001009.01.T01:CDS 40.0%
AGCATATTGAGGAAGGAGTT+GGG + Chr1:14531789-14531808 MsG0180001009.01.T01:CDS 40.0%
AGGAGTTGGGATTGTTGATA+AGG + Chr1:14531802-14531821 MsG0180001009.01.T01:CDS 40.0%
AGTTACGCGAAAACTGATCT+GGG + Chr1:14531611-14531630 MsG0180001009.01.T01:CDS 40.0%
CAATTCTCAAGAGATCCGTT+CGG + Chr1:14535945-14535964 MsG0180001009.01.T01:CDS 40.0%
CATACAGTGGGAAAAATGTG+AGG + Chr1:14533965-14533984 MsG0180001009.01.T01:intron 40.0%
CATTAGCAGTGTGAACATGT+CGG - Chr1:14534991-14535010 None:intergenic 40.0%
CATTCGATTTATACGAGCAG+TGG + Chr1:14531686-14531705 MsG0180001009.01.T01:CDS 40.0%
CCATGTTCTTTCACATAGAC+AGG - Chr1:14533042-14533061 None:intergenic 40.0%
CCTGTCTATGTGAAAGAACA+TGG + Chr1:14533039-14533058 MsG0180001009.01.T01:intron 40.0%
CTTAAAATCTGAGTCCCTTG+AGG - Chr1:14534250-14534269 None:intergenic 40.0%
GAAAGAGGATTCGTGGTATT+TGG + Chr1:14531724-14531743 MsG0180001009.01.T01:CDS 40.0%
GAACCTTTGTTCAGATACTG+TGG + Chr1:14536053-14536072 MsG0180001009.01.T01:CDS 40.0%
GAATGTGCATGTGATCATAG+TGG - Chr1:14535603-14535622 None:intergenic 40.0%
GAGAGTTATCAGAAGAATCC+TGG + Chr1:14531746-14531765 MsG0180001009.01.T01:CDS 40.0%
GATATACGTCTAATCTCCTC+AGG + Chr1:14535527-14535546 MsG0180001009.01.T01:intron 40.0%
GCTGTCTTGCAGAAATCAAA+AGG + Chr1:14534103-14534122 MsG0180001009.01.T01:intron 40.0%
GGAAACAGAGGAACTAAAAC+GGG + Chr1:14534007-14534026 MsG0180001009.01.T01:intron 40.0%
GTGAATTGTCTCCTGTAACA+AGG + Chr1:14534761-14534780 MsG0180001009.01.T01:intron 40.0%
GTGCACAGGGAAGAAAATTA+AGG + Chr1:14534148-14534167 MsG0180001009.01.T01:intron 40.0%
GTTCGTTTGATTGTGGTTGT+GGG - Chr1:14531431-14531450 None:intergenic 40.0%
GTTTATGTGGGAAGCAAATG+CGG - Chr1:14533256-14533275 None:intergenic 40.0%
TAAAACGGGAAACAGAGGAA+GGG + Chr1:14534021-14534040 MsG0180001009.01.T01:intron 40.0%
TACGGAATTGAGCGATGAAA+AGG - Chr1:14536011-14536030 None:intergenic 40.0%
TCTGGACATCCATTAGGATA+CGG - Chr1:14536029-14536048 None:intergenic 40.0%
TGGGATTGACTACCTAAGTA+TGG - Chr1:14533565-14533584 None:intergenic 40.0%
TTATCAGAAGAATCCTGGTC+AGG + Chr1:14531751-14531770 MsG0180001009.01.T01:CDS 40.0%
TTCCCAGAAAAACAGTAGCA+TGG + Chr1:14534589-14534608 MsG0180001009.01.T01:intron 40.0%
TTGTCTCCTGTAACAAGGAA+TGG + Chr1:14534766-14534785 MsG0180001009.01.T01:intron 40.0%
TTTCGCGTAACTGTTCAACT+GGG - Chr1:14531603-14531622 None:intergenic 40.0%
! CTCAAGGGACTCAGATTTTA+AGG + Chr1:14534248-14534267 MsG0180001009.01.T01:intron 40.0%
! TCTTTTGCATTTGACGTAGC+AGG - Chr1:14535891-14535910 None:intergenic 40.0%
! TTTTCGCGTAACTGTTCAAC+TGG - Chr1:14531604-14531623 None:intergenic 40.0%
!! AAATCGGATTTTGGGTATGC+GGG - Chr1:14531389-14531408 None:intergenic 40.0%
!! ACTCCATGCTACTGTTTTTC+TGG - Chr1:14534595-14534614 None:intergenic 40.0%
!! CTCCATGCTACTGTTTTTCT+GGG - Chr1:14534594-14534613 None:intergenic 40.0%
!! GAAATCGGATTTTGGGTATG+CGG - Chr1:14531390-14531409 None:intergenic 40.0%
!! GGTTTGCTTTTGTTTAGTGG+TGG + Chr1:14531833-14531852 MsG0180001009.01.T01:CDS 40.0%
!! TGCTTTAAAAGGCGAGGAAT+TGG + Chr1:14535914-14535933 MsG0180001009.01.T01:CDS 40.0%
!! TGTGAAATGGAGAGCACTTA+CGG + Chr1:14533333-14533352 MsG0180001009.01.T01:CDS 40.0%
!! TTTGGTTTGAAGCGATGCAA+TGG - Chr1:14531321-14531340 None:intergenic 40.0%
!!! TGGGCTGTTGCTGATTTTAA+AGG + Chr1:14531902-14531921 MsG0180001009.01.T01:CDS 40.0%
!!! TGGTGAGTTTTTGGGTTTTC+TGG - Chr1:14531453-14531472 None:intergenic 40.0%
AAAGTGGGATAGCGTATAGC+AGG + Chr1:14533612-14533631 MsG0180001009.01.T01:intron 45.0%
AACATCAAGCATGGTAGACC+AGG + Chr1:14532980-14532999 MsG0180001009.01.T01:intron 45.0%
AAGGAGAGCAGGAAGAAGAA+AGG + Chr1:14534122-14534141 MsG0180001009.01.T01:intron 45.0%
AAGTGGGATAGCGTATAGCA+GGG + Chr1:14533613-14533632 MsG0180001009.01.T01:intron 45.0%
AATACCCAGAATACGCCTCA+AGG + Chr1:14534232-14534251 MsG0180001009.01.T01:intron 45.0%
AGAGGAAGGGAAACAGAATC+TGG + Chr1:14534034-14534053 MsG0180001009.01.T01:intron 45.0%
ATACCCAGAATACGCCTCAA+GGG + Chr1:14534233-14534252 MsG0180001009.01.T01:intron 45.0%
ATATAGCCGAGTGGATGATG+TGG + Chr1:14532315-14532334 MsG0180001009.01.T01:intron 45.0%
CACACACATTAGACACTGTC+TGG - Chr1:14535411-14535430 None:intergenic 45.0%
CACTTACGGAAGAACATGCA+AGG + Chr1:14533347-14533366 MsG0180001009.01.T01:CDS 45.0%
CAGTGGGAAAAATGTGAGGA+AGG + Chr1:14533969-14533988 MsG0180001009.01.T01:intron 45.0%
CAGTTACGCGAAAACTGATC+TGG + Chr1:14531610-14531629 MsG0180001009.01.T01:CDS 45.0%
CCTACAGAACTGATGAGACA+GGG - Chr1:14533107-14533126 None:intergenic 45.0%
CGCTCAATTCCGTATCCTAA+TGG + Chr1:14536017-14536036 MsG0180001009.01.T01:CDS 45.0%
CTAAAACGGGAAACAGAGGA+AGG + Chr1:14534020-14534039 MsG0180001009.01.T01:intron 45.0%
CTACCTCCATTCCTTGTTAC+AGG - Chr1:14534775-14534794 None:intergenic 45.0%
GACAGTGTCTAATGTGTGTG+AGG + Chr1:14535411-14535430 MsG0180001009.01.T01:intron 45.0%
GAGAGGAAGAAAAACTGGGT+CGG + Chr1:14533851-14533870 MsG0180001009.01.T01:intron 45.0%
GAGAGGAATAGAGGAGAAGT+AGG + Chr1:14534197-14534216 MsG0180001009.01.T01:intron 45.0%
GCAATGGAATCATTGGATCG+CGG - Chr1:14531305-14531324 None:intergenic 45.0%
GCAGAAATCAAAAGGAGAGC+AGG + Chr1:14534111-14534130 MsG0180001009.01.T01:intron 45.0%
GCGATGTGATTGACTACCTA+TGG + Chr1:14534431-14534450 MsG0180001009.01.T01:intron 45.0%
GGAACTAAAACGGGAAACAG+AGG + Chr1:14534016-14534035 MsG0180001009.01.T01:intron 45.0%
GGAAGGAAATCTGGACAAGA+TGG + Chr1:14533986-14534005 MsG0180001009.01.T01:intron 45.0%
GGTCCACAGTATCTGAACAA+AGG - Chr1:14536059-14536078 None:intergenic 45.0%
GGTTCGTTTGATTGTGGTTG+TGG - Chr1:14531432-14531451 None:intergenic 45.0%
GTATGCGGGGAAAGATTTGT+AGG - Chr1:14531375-14531394 None:intergenic 45.0%
GTGATAGGTCTCTGCATTCA+CGG + Chr1:14534175-14534194 MsG0180001009.01.T01:intron 45.0%
TCACAACCACATCATCCACT+CGG - Chr1:14532324-14532343 None:intergenic 45.0%
TCATCCACTCGGCTATATCT+AGG - Chr1:14532313-14532332 None:intergenic 45.0%
TCTCCTGTAACAAGGAATGG+AGG + Chr1:14534769-14534788 MsG0180001009.01.T01:intron 45.0%
TCTGGACAAGATGGAAACAG+AGG + Chr1:14533995-14534014 MsG0180001009.01.T01:intron 45.0%
TGCAAGAGAAGCTACATGGA+AGG - Chr1:14531274-14531293 None:intergenic 45.0%
TGGAACAACAGAATGGCCAT+AGG - Chr1:14534450-14534469 None:intergenic 45.0%
TGTCAGTGTGCGATAATCGT+AGG - Chr1:14535494-14535513 None:intergenic 45.0%
! TTCTCTTGGGTTGTCTCTGT+AGG + Chr1:14533298-14533317 MsG0180001009.01.T01:intron 45.0%
! TTGCAGAAAAGAAAGTGCGG+AGG + Chr1:14534811-14534830 MsG0180001009.01.T01:intron 45.0%
! TTGGGTTGTCTCTGTAGGTA+AGG + Chr1:14533303-14533322 MsG0180001009.01.T01:intron 45.0%
!! AATCGGATTTTGGGTATGCG+GGG - Chr1:14531388-14531407 None:intergenic 45.0%
!! AGAAGCTGCTTTAAAAGGCG+AGG + Chr1:14535908-14535927 MsG0180001009.01.T01:CDS 45.0%
!! AAATAATATATTAAAATATG+TGG + Chr1:14533539-14533558 MsG0180001009.01.T01:intron 5.0%
AAACAGAATCTGGTGTGCGC+TGG + Chr1:14534044-14534063 MsG0180001009.01.T01:intron 50.0%
AACCACCACTACTATGCCCA+CGG - Chr1:14536104-14536123 None:intergenic 50.0%
ACACTGACACGTGTTGGACA+GGG + Chr1:14535505-14535524 MsG0180001009.01.T01:intron 50.0%
ACAGAACTGATGAGACAGGG+CGG - Chr1:14533104-14533123 None:intergenic 50.0%
AGTCCCTTGAGGCGTATTCT+GGG - Chr1:14534239-14534258 None:intergenic 50.0%
ATGAAGCACGAACACACCTG+AGG - Chr1:14535546-14535565 None:intergenic 50.0%
CAATCACATCGCGATCACCA+TGG - Chr1:14534423-14534442 None:intergenic 50.0%
CCCTGTCTCATCAGTTCTGT+AGG + Chr1:14533104-14533123 MsG0180001009.01.T01:intron 50.0%
CTCTCACACCCTCTCTGTTA+TGG - Chr1:14533787-14533806 None:intergenic 50.0%
GAGTCAAGGTTCTTCTACGC+TGG + Chr1:14535861-14535880 MsG0180001009.01.T01:CDS 50.0%
GAGTGAGGCGCAGAGTTATT+GGG + Chr1:14531883-14531902 MsG0180001009.01.T01:CDS 50.0%
GATAGGTGCCAGTAAGCTCT+CGG - Chr1:14533411-14533430 None:intergenic 50.0%
GCATTCACGGAGAGGAATAG+AGG + Chr1:14534188-14534207 MsG0180001009.01.T01:intron 50.0%
GCCTACAGAACTGATGAGAC+AGG - Chr1:14533108-14533127 None:intergenic 50.0%
GCGTAGAAGAACCTTGACTC+TGG - Chr1:14535861-14535880 None:intergenic 50.0%
GGACACTTGTCTGAGTTGTC+GGG + Chr1:14535450-14535469 MsG0180001009.01.T01:intron 50.0%
GGGACACTTGTCTGAGTTGT+CGG + Chr1:14535449-14535468 MsG0180001009.01.T01:intron 50.0%
TATCGCACACTGACACGTGT+TGG + Chr1:14535499-14535518 MsG0180001009.01.T01:intron 50.0%
TCGTCCTAGATATAGCCGAG+TGG + Chr1:14532306-14532325 MsG0180001009.01.T01:intron 50.0%
! TACAAGCTCGATTGGCTACC+TGG - Chr1:14533001-14533020 None:intergenic 50.0%
! TGTTTAGTGGTGGTGAGACG+AGG + Chr1:14531843-14531862 MsG0180001009.01.T01:CDS 50.0%
!! CGATTGGCTTTCCAGAGTCA+AGG + Chr1:14535847-14535866 MsG0180001009.01.T01:CDS 50.0%
!! CGCTATCCCACTTTTATGGC+CGG - Chr1:14533606-14533625 None:intergenic 50.0%
AAATAGCAGCGCAGAGCAGC+CGG + Chr1:14533584-14533603 MsG0180001009.01.T01:intron 55.0%
ACAAACGTAGCAGCCTGACC+AGG - Chr1:14531767-14531786 None:intergenic 55.0%
ACATCGCGATCACCATGGTG+CGG - Chr1:14534418-14534437 None:intergenic 55.0%
ACCACCACTACTATGCCCAC+GGG - Chr1:14536103-14536122 None:intergenic 55.0%
AGAGCAGCCGGCCATAAAAG+TGG + Chr1:14533596-14533615 MsG0180001009.01.T01:intron 55.0%
AGGTCTCTGCATTCACGGAG+AGG + Chr1:14534180-14534199 MsG0180001009.01.T01:intron 55.0%
AGTGAACCTCGGCATCCGAA+CGG - Chr1:14535963-14535982 None:intergenic 55.0%
AGTGCACCAGGATATGGAGC+TGG - Chr1:14536080-14536099 None:intergenic 55.0%
ATATCCTGGTGCACTCCCGT+GGG + Chr1:14536085-14536104 MsG0180001009.01.T01:CDS 55.0%
CACACTGACACGTGTTGGAC+AGG + Chr1:14535504-14535523 MsG0180001009.01.T01:intron 55.0%
CTCGGAGAATGCATCTGACG+CGG + Chr1:14534343-14534362 MsG0180001009.01.T01:intron 55.0%
GAGCAGCCGGCCATAAAAGT+GGG + Chr1:14533597-14533616 MsG0180001009.01.T01:intron 55.0%
GAGTCCCTTGAGGCGTATTC+TGG - Chr1:14534240-14534259 None:intergenic 55.0%
GCGTGGGGTGAACATGTTTG+TGG + Chr1:14534081-14534100 MsG0180001009.01.T01:intron 55.0%
GGAGTGAGGCGCAGAGTTAT+TGG + Chr1:14531882-14531901 MsG0180001009.01.T01:CDS 55.0%
TAACTCTGCGCCTCACTCCT+CGG - Chr1:14531881-14531900 None:intergenic 55.0%
TGGTGAGACGAGGAAAGACG+CGG + Chr1:14531853-14531872 MsG0180001009.01.T01:CDS 55.0%
TGTGGACCAGCTCCATATCC+TGG + Chr1:14536071-14536090 MsG0180001009.01.T01:CDS 55.0%
! GACTGTCTGATGGTAGCGTG+GGG + Chr1:14534066-14534085 MsG0180001009.01.T01:intron 55.0%
! GCTGCTCTGCGCTGCTATTT+GGG - Chr1:14533584-14533603 None:intergenic 55.0%
! GGACTGTCTGATGGTAGCGT+GGG + Chr1:14534065-14534084 MsG0180001009.01.T01:intron 55.0%
! TGGACTGTCTGATGGTAGCG+TGG + Chr1:14534064-14534083 MsG0180001009.01.T01:intron 55.0%
!! TGTCGGTTCCGAGAGCTTAC+TGG + Chr1:14533400-14533419 MsG0180001009.01.T01:CDS 55.0%
AGAGATCCGTTCGGATGCCG+AGG + Chr1:14535954-14535973 MsG0180001009.01.T01:CDS 60.0%
ATACACGACTGACCCTGCCG+TGG + Chr1:14534377-14534396 MsG0180001009.01.T01:intron 60.0%
CACTCCCGTGGGCATAGTAG+TGG + Chr1:14536096-14536115 MsG0180001009.01.T01:exon 60.0%
CATATCCTGGTGCACTCCCG+TGG + Chr1:14536084-14536103 MsG0180001009.01.T01:CDS 60.0%
GGCTGCTCTGCGCTGCTATT+TGG - Chr1:14533585-14533604 None:intergenic 60.0%
GGTGAGACGAGGAAAGACGC+GGG + Chr1:14531854-14531873 MsG0180001009.01.T01:CDS 60.0%
GTGAGACGAGGAAAGACGCG+GGG + Chr1:14531855-14531874 MsG0180001009.01.T01:CDS 60.0%
GTGTGCGCTGGACTGTCTGA+TGG + Chr1:14534056-14534075 MsG0180001009.01.T01:intron 60.0%
TCCCGTGGGCATAGTAGTGG+TGG + Chr1:14536099-14536118 MsG0180001009.01.T01:exon 60.0%
! CACGGGAGTGCACCAGGATA+TGG - Chr1:14536086-14536105 None:intergenic 60.0%
! TATGCCCACGGGAGTGCACC+AGG - Chr1:14536092-14536111 None:intergenic 65.0%
CACGACTGACCCTGCCGTGG+CGG + Chr1:14534380-14534399 MsG0180001009.01.T01:intron 70.0%
GCGATCACCATGGTGCGGCG+CGG - Chr1:14534413-14534432 None:intergenic 70.0%
AGACGCGGGGCCGAGGAGTG+AGG + Chr1:14531868-14531887 MsG0180001009.01.T01:CDS 75.0%
CCATAGGCCGCGCCGCACCA+TGG + Chr1:14534403-14534422 MsG0180001009.01.T01:intron 75.0%
CCATGGTGCGGCGCGGCCTA+TGG - Chr1:14534406-14534425 None:intergenic 75.0%
CGAGGAAAGACGCGGGGCCG+AGG + Chr1:14531861-14531880 MsG0180001009.01.T01:CDS 75.0%
GACCCTGCCGTGGCGGCCAT+AGG + Chr1:14534387-14534406 MsG0180001009.01.T01:intron 75.0%
GGCCTATGGCCGCCACGGCA+GGG - Chr1:14534392-14534411 None:intergenic 75.0%
! CGGCCTATGGCCGCCACGGC+AGG - Chr1:14534393-14534412 None:intergenic 80.0%
! GGCGCGGCCTATGGCCGCCA+CGG - Chr1:14534397-14534416 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 14531243 14536347 14531243 ID=MsG0180001009.01;Name=MsG0180001009.01
Chr1 mRNA 14531243 14536347 14531243 ID=MsG0180001009.01.T01;Parent=MsG0180001009.01;Name=MsG0180001009.01.T01;_AED=0.40;_eAED=0.40;_QI=101|1|1|1|1|1|3|235|343
Chr1 exon 14531243 14531932 14531243 ID=MsG0180001009.01.T01:exon:9825;Parent=MsG0180001009.01.T01
Chr1 exon 14533320 14533444 14533320 ID=MsG0180001009.01.T01:exon:9826;Parent=MsG0180001009.01.T01
Chr1 exon 14535795 14536347 14535795 ID=MsG0180001009.01.T01:exon:9827;Parent=MsG0180001009.01.T01
Chr1 five_prime_UTR 14531243 14531343 14531243 ID=MsG0180001009.01.T01:five_prime_utr;Parent=MsG0180001009.01.T01
Chr1 CDS 14531344 14531932 14531344 ID=MsG0180001009.01.T01:cds;Parent=MsG0180001009.01.T01
Chr1 CDS 14533320 14533444 14533320 ID=MsG0180001009.01.T01:cds;Parent=MsG0180001009.01.T01
Chr1 CDS 14535795 14536112 14535795 ID=MsG0180001009.01.T01:cds;Parent=MsG0180001009.01.T01
Chr1 three_prime_UTR 14536113 14536347 14536113 ID=MsG0180001009.01.T01:three_prime_utr;Parent=MsG0180001009.01.T01
Gene Sequence

>MsG0180001009.01.T01

ATGAACAATTTCTCATTCACATCACAATCCTACAAATCTTTCCCCGCATACCCAAAATCCGATTTCGATTTAGAATCTGGCATTCCCACAACCACAATCAAACGAACCAGAAAACCCAAAAACTCACCAATTTTCCACCTTTTCAAAATGCTCAAAAAATTCCACCATTTTTTCAAATTTCATCCTTTCGTAGCTATTTTACTACTATCTTTAACTTTTGGTATAACCCTTTTCGTTTTTCTCTCTTACAACGCAACCCAGTTGAACAGTTACGCGAAAACTGATCTGGGTCTTGATGATTATCCGTTTTCGAAGCTGAAGAATTTGGTTATGGTTGCTGGTCATTCGATTTATACGAGCAGTGGTTGTGAGAAGATTGAGAAAGAGGATTCGTGGTATTTGGAGAGTTATCAGAAGAATCCTGGTCAGGCTGCTACGTTTGTGAAGCATATTGAGGAAGGAGTTGGGATTGTTGATAAGGATGAGAAGGGTTTGCTTTTGTTTAGTGGTGGTGAGACGAGGAAAGACGCGGGGCCGAGGAGTGAGGCGCAGAGTTATTGGGCTGTTGCTGATTTTAAAGGATGGTTTGGTAAGGAAGAAAGTGTGAAATGGAGAGCACTTACGGAAGAACATGCAAGGGACAGCTTTGAAAATCTTCTATTTAGTGTCTGTCGGTTCCGAGAGCTTACTGGCACCTATCCTCAAAATATTACTGTTGTAAGTTATGATTTCAAGAAAGACAGATTTGCAAATCTACATCGATCTGCGATTGGCTTTCCAGAGTCAAGGTTCTTCTACGCTGGCACACCTGCTACGTCAAATGCAAAAGAAGCTGCTTTAAAAGGCGAGGAATTGGTGAGAACGCAATTCTCAAGAGATCCGTTCGGATGCCGAGGTTCACTCTATCACAAAAAGCTAAAGCGCGACCCTTTTCATCGCTCAATTCCGTATCCTAATGGATGTCCAGAAATTGAACCTTTGTTCAGATACTGTGGACCAGCTCCATATCCTGGTGCACTCCCGTGGGCATAG

Protein sequence

>MsG0180001009.01.T01

MNNFSFTSQSYKSFPAYPKSDFDLESGIPTTTIKRTRKPKNSPIFHLFKMLKKFHHFFKFHPFVAILLLSLTFGITLFVFLSYNATQLNSYAKTDLGLDDYPFSKLKNLVMVAGHSIYTSSGCEKIEKEDSWYLESYQKNPGQAATFVKHIEEGVGIVDKDEKGLLLFSGGETRKDAGPRSEAQSYWAVADFKGWFGKEESVKWRALTEEHARDSFENLLFSVCRFRELTGTYPQNITVVSYDFKKDRFANLHRSAIGFPESRFFYAGTPATSNAKEAALKGEELVRTQFSRDPFGCRGSLYHKKLKRDPFHRSIPYPNGCPEIEPLFRYCGPAPYPGALPWA*