AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005820.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005820.01.T01 MTR_1g107485 97.701 87 2 0 10 96 279 365 1.30e-49 172
MsG0180005820.01.T01 MTR_1g107485 70.677 133 7 2 96 196 440 572 1.16e-38 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005820.01.T01 AT3G19490 83.908 87 14 0 10 96 277 363 1.24e-41 150
MsG0180005820.01.T01 AT3G19490 61.654 133 19 2 96 196 437 569 1.56e-31 122
MsG0180005820.01.T01 AT1G49810 73.034 89 22 1 10 96 134 222 2.24e-34 128
MsG0180005820.01.T01 AT1G49810 44.000 125 34 3 96 186 296 418 9.24e-22 94.0

Find 75 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAATCAGTTCACTATTT+TGG 0.123960 1:+96573045 None:intergenic
AGCTGCTGGAGTTGCATTTA+TGG 0.234796 1:-96572867 MsG0180005820.01.T01:CDS
GCAGGATTCTTCCGATGTTT+TGG 0.281108 1:-96573568 MsG0180005820.01.T01:CDS
TGGAAAAGGTGGACTTCTTT+TGG 0.286827 1:-96572841 MsG0180005820.01.T01:CDS
TTGTTTGCACCGTAGTTATT+TGG 0.299055 1:+96574011 None:intergenic
TATGCAAATACTTCATTTGC+TGG 0.307818 1:+96572254 None:intergenic
GCAATATCAGCTATGGGTTT+GGG 0.337767 1:-96572447 MsG0180005820.01.T01:CDS
GGAACCTCAGCTAGAGTTGT+AGG 0.345612 1:+96572635 None:intergenic
GCTGCTGGAGTTGCATTTAT+GGG 0.350491 1:-96572866 MsG0180005820.01.T01:CDS
TTAAGATTAATTCCTCTCAT+TGG 0.362885 1:-96572375 MsG0180005820.01.T01:CDS
AGCAATATCAGCTATGGGTT+TGG 0.382993 1:-96572448 MsG0180005820.01.T01:CDS
TGGAGGCAGCAGGTATTCTT+CGG 0.383794 1:-96573097 MsG0180005820.01.T01:CDS
GATTCTGTTGACAGGATACT+TGG 0.385727 1:-96574118 MsG0180005820.01.T01:intron
TACATTGTAGGAACAATATC+CGG 0.387143 1:+96572345 None:intergenic
CCATGCATTGTAAGATTGAA+TGG 0.402714 1:-96572398 MsG0180005820.01.T01:CDS
CATGTTGCAAATAATATCTC+AGG 0.408121 1:+96572301 None:intergenic
TTCCATGGTTGCTGCAACAA+TGG 0.427324 1:-96572986 MsG0180005820.01.T01:CDS
GGAGGCAGCAGGTATTCTTC+GGG 0.433449 1:-96573096 MsG0180005820.01.T01:CDS
GAACTGATTGCAAGTGCTAT+TGG 0.447025 1:-96573035 MsG0180005820.01.T01:CDS
CTTCTGTTCAGTGAAGCTAA+TGG 0.451539 1:-96573597 MsG0180005820.01.T01:intron
TGCATTTATGGGGATGGAAA+AGG 0.452403 1:-96572855 MsG0180005820.01.T01:CDS
ATTCCCTTTGTGCAGGTTAG+CGG 0.473308 1:-96572728 MsG0180005820.01.T01:intron
CCATTCAATCTTACAATGCA+TGG 0.475668 1:+96572398 None:intergenic
AAAATAGCACAATAATGGAC+AGG 0.479085 1:-96574260 None:intergenic
GGTGGTGCATGGACTCCTAT+AGG 0.479977 1:-96574067 MsG0180005820.01.T01:CDS
ACAACTATGCTGTGGATACA+TGG 0.487424 1:-96574034 MsG0180005820.01.T01:CDS
TCCTCTCATTGGATTCGTCC+CGG 0.512118 1:-96572364 MsG0180005820.01.T01:CDS
TGAAGCTAATGGCAAGGGGC+AGG 0.514246 1:-96573586 MsG0180005820.01.T01:CDS
ATGCAAATACTTCATTTGCT+GGG 0.517968 1:+96572255 None:intergenic
CATGACATGAGGTACATTGT+AGG 0.519646 1:+96572333 None:intergenic
CAGCAAATGCGGGTGGTGCA+TGG 0.522415 1:-96574078 MsG0180005820.01.T01:CDS
GAGTGGAACAGCTAGAGAAA+TGG 0.525573 1:+96573741 None:intergenic
TTGTAGGGAGGGAAATGTTG+AGG 0.528310 1:+96572651 None:intergenic
ATAGGGAGCAATATCAGCTA+TGG 0.532749 1:-96572454 MsG0180005820.01.T01:intron
TTCAGTGAAGCTAATGGCAA+GGG 0.538901 1:-96573591 MsG0180005820.01.T01:intron
AACTACGGTGCAAACAATGA+AGG 0.541788 1:-96574005 MsG0180005820.01.T01:intron
TCCCATTGTTGCAGCAACCA+TGG 0.541935 1:+96572984 None:intergenic
TCCATGGTTGCTGCAACAAT+GGG 0.552599 1:-96572985 MsG0180005820.01.T01:CDS
TCAATCTTACAATGCATGGA+TGG 0.566386 1:+96572402 None:intergenic
GAACCTCAGCTAGAGTTGTA+GGG 0.569832 1:+96572636 None:intergenic
GAGATATTATTTGCAACATG+AGG 0.571301 1:-96572298 MsG0180005820.01.T01:CDS
CCTCCCTACAACTCTAGCTG+AGG 0.573285 1:-96572639 MsG0180005820.01.T01:intron
GGGAATTCATGCATCACATA+CGG 0.575965 1:-96574239 MsG0180005820.01.T01:intron
GTTGTGGTAACATCGCCTAT+AGG 0.578404 1:+96574052 None:intergenic
GTCAAGGACATTAGAGCGAG+TGG 0.578934 1:+96573724 None:intergenic
CAATTATAGACAATGTTCCA+TGG 0.579295 1:-96573001 MsG0180005820.01.T01:CDS
CTGCTGGAGTTGCATTTATG+GGG 0.582573 1:-96572865 MsG0180005820.01.T01:CDS
GAGGTGAGATAAGCTCATCT+TGG 0.584871 1:-96572425 MsG0180005820.01.T01:CDS
GTTCAGTGAAGCTAATGGCA+AGG 0.587779 1:-96573592 MsG0180005820.01.T01:intron
ACATTGTAGGAACAATATCC+GGG 0.590183 1:+96572346 None:intergenic
TAGGGAGCAATATCAGCTAT+GGG 0.590261 1:-96572453 MsG0180005820.01.T01:CDS
TGAGAAACAAGCTTTCCTCT+AGG 0.598024 1:+96573528 None:intergenic
TGGAGTTGCATTTATGGGGA+TGG 0.598744 1:-96572861 MsG0180005820.01.T01:CDS
CTCAGCTAGAGTTGTAGGGA+GGG 0.610550 1:+96572640 None:intergenic
CAATGTACCTCATGTCATGT+CGG 0.612896 1:-96572329 MsG0180005820.01.T01:CDS
ATGTATCCACAGCATAGTTG+TGG 0.621110 1:+96574036 None:intergenic
GATACATGGCCAAATAACTA+CGG 0.625569 1:-96574020 MsG0180005820.01.T01:CDS
ATGTTGCAAATAATATCTCA+GGG 0.632986 1:+96572302 None:intergenic
ATGTTACCACAACTATGCTG+TGG 0.636567 1:-96574042 MsG0180005820.01.T01:CDS
GTTGTAATAGCAGCAAATGC+GGG 0.638113 1:-96574088 MsG0180005820.01.T01:CDS
TCGCTCTAATGTCCTTGACT+AGG 0.639693 1:-96573720 MsG0180005820.01.T01:intron
ACAGCTAGAGAAATGGCTGA+AGG 0.649150 1:+96573748 None:intergenic
AAATAGCACAATAATGGACA+GGG 0.649212 1:-96574259 None:intergenic
CCTCAGCTAGAGTTGTAGGG+AGG 0.650975 1:+96572639 None:intergenic
ATTTATGGGGATGGAAAAGG+TGG 0.651654 1:-96572852 MsG0180005820.01.T01:CDS
ATATCAGCTATGGGTTTGGG+AGG 0.651782 1:-96572444 MsG0180005820.01.T01:CDS
CTGTTCAGATGCCAAAACAT+CGG 0.656837 1:+96573557 None:intergenic
TCCGGGACGAATCCAATGAG+AGG 0.661372 1:+96572363 None:intergenic
AATACAATAGTACCTAGTCA+AGG 0.667823 1:+96573708 None:intergenic
TGTTGTAATAGCAGCAAATG+CGG 0.673128 1:-96574089 MsG0180005820.01.T01:CDS
GGGCATTCCGACATGACATG+AGG 0.684902 1:+96572322 None:intergenic
TCAGTGAAGCTAATGGCAAG+GGG 0.693086 1:-96573590 MsG0180005820.01.T01:intron
TCTGAACAGATGGCTCCTAG+AGG 0.698445 1:-96573543 MsG0180005820.01.T01:CDS
GTAATAGCAGCAAATGCGGG+TGG 0.748761 1:-96574085 MsG0180005820.01.T01:CDS
GTTATGAACAGCTAAATACG+CGG 0.773358 1:+96572673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGAAAATGCAATTA+TGG + Chr1:96572728-96572747 None:intergenic 15.0%
!!! CATAATTTTGTAAATTATGA+AGG + Chr1:96572886-96572905 None:intergenic 15.0%
!! AATTATATCTAGTGAAAAGT+AGG + Chr1:96573715-96573734 None:intergenic 20.0%
!! CATAATTTACAAAATTATGC+TGG - Chr1:96572887-96572906 MsG0180005820.01.T01:intron 20.0%
!!! ATTGCATTTTCTTTATTTTC+AGG - Chr1:96572730-96572749 MsG0180005820.01.T01:intron 20.0%
!!! TTGCATTTTCTTTATTTTCA+GGG - Chr1:96572731-96572750 MsG0180005820.01.T01:intron 20.0%
! AACTACTCAGTAATTTATAG+TGG - Chr1:96572594-96572613 MsG0180005820.01.T01:intron 25.0%
! ACTATATCAAGAGAATATTC+CGG + Chr1:96572655-96572674 None:intergenic 25.0%
! ATAAATTACTGAGTAGTTTC+AGG + Chr1:96572592-96572611 None:intergenic 25.0%
! ATGACAAAAATCATAACCTA+TGG + Chr1:96574012-96574031 None:intergenic 25.0%
! ATGTTGCAAATAATATCTCA+GGG + Chr1:96574213-96574232 None:intergenic 25.0%
! CTATTAGTGCTTATAATTAG+TGG - Chr1:96572360-96572379 MsG0180005820.01.T01:CDS 25.0%
! TAACAGATAATAGAATTCCT+AGG + Chr1:96573207-96573226 None:intergenic 25.0%
! TAATTATAAGCACTAATAGC+AGG + Chr1:96572359-96572378 None:intergenic 25.0%
! TTAAGATTAATTCCTCTCAT+TGG - Chr1:96574137-96574156 MsG0180005820.01.T01:intron 25.0%
! TTTATATGTGCGTATGTATA+GGG - Chr1:96574041-96574060 MsG0180005820.01.T01:CDS 25.0%
!!! AATTGTTTTTGCAATCGAAA+CGG - Chr1:96573376-96573395 MsG0180005820.01.T01:intron 25.0%
!!! ATACATTTTCATTTTGACCA+AGG + Chr1:96572705-96572724 None:intergenic 25.0%
!!! CTTCTTTTGGTACTTTAAAA+AGG - Chr1:96573684-96573703 MsG0180005820.01.T01:intron 25.0%
AAACAATGAAGGTTATCTCT+TGG - Chr1:96572518-96572537 MsG0180005820.01.T01:intron 30.0%
AATACAATAGTACCTAGTCA+AGG + Chr1:96572807-96572826 None:intergenic 30.0%
ACTATTCAAATCAGCATTCT+TGG + Chr1:96572841-96572860 None:intergenic 30.0%
ATAATTAGTGGAAGTTGCTT+TGG - Chr1:96572372-96572391 MsG0180005820.01.T01:CDS 30.0%
ATTATGGTGAATCTGAAAAG+AGG - Chr1:96573122-96573141 MsG0180005820.01.T01:intron 30.0%
CAATTATAGACAATGTTCCA+TGG - Chr1:96573511-96573530 MsG0180005820.01.T01:intron 30.0%
CATGTTGCAAATAATATCTC+AGG + Chr1:96574214-96574233 None:intergenic 30.0%
CTATATCAAGAGAATATTCC+GGG + Chr1:96572654-96572673 None:intergenic 30.0%
GAATAAAATTAGTCAGGCTA+AGG + Chr1:96572337-96572356 None:intergenic 30.0%
GAATTCTATTATCTGTTAGC+AGG - Chr1:96573209-96573228 MsG0180005820.01.T01:intron 30.0%
GAGATATTATTTGCAACATG+AGG - Chr1:96574214-96574233 MsG0180005820.01.T01:intron 30.0%
GTTTATATGTGCGTATGTAT+AGG - Chr1:96574040-96574059 MsG0180005820.01.T01:CDS 30.0%
TACATTGTAGGAACAATATC+CGG + Chr1:96574170-96574189 None:intergenic 30.0%
TAGCAGGAATAAAATTAGTC+AGG + Chr1:96572343-96572362 None:intergenic 30.0%
TATATCAAGAGAATATTCCG+GGG + Chr1:96572653-96572672 None:intergenic 30.0%
TCATAAGTTTACGATTTCCT+TGG - Chr1:96572685-96572704 MsG0180005820.01.T01:CDS 30.0%
TTATCTGTTAGCAGGTAATA+AGG - Chr1:96573217-96573236 MsG0180005820.01.T01:intron 30.0%
TTTCAAGAACCAGAAAGAAA+AGG + Chr1:96573901-96573920 None:intergenic 30.0%
! ATGATTTTTGTCATGACAAG+AGG - Chr1:96574018-96574037 MsG0180005820.01.T01:CDS 30.0%
! TCTTTTCAGATTCACCATAA+TGG + Chr1:96573123-96573142 None:intergenic 30.0%
! TTGCAATCAGTTCACTATTT+TGG + Chr1:96573470-96573489 None:intergenic 30.0%
!! CTGAGACTTTAAAACAAATG+TGG + Chr1:96573287-96573306 None:intergenic 30.0%
ACAAAGGGAATAAACGACAT+CGG + Chr1:96573775-96573794 None:intergenic 35.0%
ACATTGTAGGAACAATATCC+GGG + Chr1:96574169-96574188 None:intergenic 35.0%
CATGGAATTATGTCATGTCA+GGG + Chr1:96573340-96573359 None:intergenic 35.0%
CCATGCATTGTAAGATTGAA+TGG - Chr1:96574114-96574133 MsG0180005820.01.T01:intron 35.0%
CCATTCAATCTTACAATGCA+TGG + Chr1:96574117-96574136 None:intergenic 35.0%
CTTACTGATGCTATCCATTA+TGG - Chr1:96573106-96573125 MsG0180005820.01.T01:intron 35.0%
GATACATGGCCAAATAACTA+CGG - Chr1:96572492-96572511 MsG0180005820.01.T01:intron 35.0%
GTTATGAACAGCTAAATACG+CGG + Chr1:96573842-96573861 None:intergenic 35.0%
TCAATCTTACAATGCATGGA+TGG + Chr1:96574113-96574132 None:intergenic 35.0%
TCCAAATAGACGTATCACAA+TGG + Chr1:96572553-96572572 None:intergenic 35.0%
TCCATTGTGATACGTCTATT+TGG - Chr1:96572549-96572568 MsG0180005820.01.T01:intron 35.0%
TGTTGTAATAGCAGCAAATG+CGG - Chr1:96572423-96572442 MsG0180005820.01.T01:CDS 35.0%
TTGTTTGCACCGTAGTTATT+TGG + Chr1:96572504-96572523 None:intergenic 35.0%
! TTTTCCATCGCAGTGATTTT+AGG - Chr1:96573254-96573273 MsG0180005820.01.T01:intron 35.0%
!! CATAATGGATAGCATCAGTA+AGG + Chr1:96573108-96573127 None:intergenic 35.0%
!! GTGGTGTTATCAAGCTATAA+AGG + Chr1:96572313-96572332 None:intergenic 35.0%
AAATTAGTCAGGCTAAGGAG+TGG + Chr1:96572332-96572351 None:intergenic 40.0%
AACTACGGTGCAAACAATGA+AGG - Chr1:96572507-96572526 MsG0180005820.01.T01:intron 40.0%
ACAACTATGCTGTGGATACA+TGG - Chr1:96572478-96572497 MsG0180005820.01.T01:intron 40.0%
AGCAATATCAGCTATGGGTT+TGG - Chr1:96574064-96574083 MsG0180005820.01.T01:CDS 40.0%
ATAGGGAGCAATATCAGCTA+TGG - Chr1:96574058-96574077 MsG0180005820.01.T01:CDS 40.0%
ATGTATCCACAGCATAGTTG+TGG + Chr1:96572479-96572498 None:intergenic 40.0%
ATGTTACCACAACTATGCTG+TGG - Chr1:96572470-96572489 MsG0180005820.01.T01:intron 40.0%
ATTTATGGGGATGGAAAAGG+TGG - Chr1:96573660-96573679 MsG0180005820.01.T01:intron 40.0%
CAATGTACCTCATGTCATGT+CGG - Chr1:96574183-96574202 MsG0180005820.01.T01:intron 40.0%
CATGACATGAGGTACATTGT+AGG + Chr1:96574182-96574201 None:intergenic 40.0%
CCATGGAATTATGTCATGTC+AGG + Chr1:96573341-96573360 None:intergenic 40.0%
CCTGACATGACATAATTCCA+TGG - Chr1:96573338-96573357 MsG0180005820.01.T01:intron 40.0%
CTATCAAGGATAGACACTCA+AGG - Chr1:96573169-96573188 MsG0180005820.01.T01:intron 40.0%
CTGTTCAGATGCCAAAACAT+CGG + Chr1:96572958-96572977 None:intergenic 40.0%
CTTCTGTTCAGTGAAGCTAA+TGG - Chr1:96572915-96572934 MsG0180005820.01.T01:intron 40.0%
GAACTGATTGCAAGTGCTAT+TGG - Chr1:96573477-96573496 MsG0180005820.01.T01:intron 40.0%
GAATTATGTCATGTCAGGGA+AGG + Chr1:96573336-96573355 None:intergenic 40.0%
GATTCTGTTGACAGGATACT+TGG - Chr1:96572394-96572413 MsG0180005820.01.T01:CDS 40.0%
GCAATATCAGCTATGGGTTT+GGG - Chr1:96574065-96574084 MsG0180005820.01.T01:CDS 40.0%
GGGAATTCATGCATCACATA+CGG - Chr1:96572273-96572292 MsG0180005820.01.T01:CDS 40.0%
GTTGTAATAGCAGCAAATGC+GGG - Chr1:96572424-96572443 MsG0180005820.01.T01:CDS 40.0%
TAGGGAGCAATATCAGCTAT+GGG - Chr1:96574059-96574078 MsG0180005820.01.T01:CDS 40.0%
TCACATACGGTTTCAGTCAT+TGG - Chr1:96572286-96572305 MsG0180005820.01.T01:CDS 40.0%
TCTATCCTTGATAGAGCTTG+TGG + Chr1:96573163-96573182 None:intergenic 40.0%
TGAGAAACAAGCTTTCCTCT+AGG + Chr1:96572987-96573006 None:intergenic 40.0%
TGCATTTATGGGGATGGAAA+AGG - Chr1:96573657-96573676 MsG0180005820.01.T01:intron 40.0%
TTAGTCAACATGAGTAGCCA+TGG + Chr1:96573358-96573377 None:intergenic 40.0%
TTCAGACTTCATTTGAGTCG+TGG - Chr1:96573928-96573947 MsG0180005820.01.T01:intron 40.0%
TTCAGTGAAGCTAATGGCAA+GGG - Chr1:96572921-96572940 MsG0180005820.01.T01:intron 40.0%
TTCCTCAAGATTCTGAGTTC+TGG - Chr1:96573569-96573588 MsG0180005820.01.T01:CDS 40.0%
TTGTCCTAAAATCACTGCGA+TGG + Chr1:96573261-96573280 None:intergenic 40.0%
! AGATTCTGAGTTCTGGCAAT+TGG - Chr1:96573576-96573595 MsG0180005820.01.T01:CDS 40.0%
! AGGAAAGCTTGTTTCTCAGT+GGG - Chr1:96572989-96573008 MsG0180005820.01.T01:CDS 40.0%
! CAATTGGTTGCATTTTGTGC+TGG - Chr1:96573592-96573611 MsG0180005820.01.T01:intron 40.0%
! GATTTTTGTCCCAGTGTTCA+AGG - Chr1:96573024-96573043 MsG0180005820.01.T01:CDS 40.0%
! TTGCTTTGGATTCTGTTGAC+AGG - Chr1:96572386-96572405 MsG0180005820.01.T01:CDS 40.0%
!! TATTTTGGACATGCGCATCA+AGG + Chr1:96573455-96573474 None:intergenic 40.0%
!! TGGAAAAGGTGGACTTCTTT+TGG - Chr1:96573671-96573690 MsG0180005820.01.T01:intron 40.0%
!!! CAAGGAGCACTATTTTTCCT+AGG - Chr1:96573187-96573206 MsG0180005820.01.T01:intron 40.0%
!!! TGTTTTGGCATCTGAACAGA+TGG - Chr1:96572959-96572978 MsG0180005820.01.T01:intron 40.0%
!!! TTTTGAGACAACCCTGCTTT+TGG + Chr1:96573956-96573975 None:intergenic 40.0%
AAGTGCCACAAGCTCTATCA+AGG - Chr1:96573155-96573174 MsG0180005820.01.T01:intron 45.0%
ACAGCTAGAGAAATGGCTGA+AGG + Chr1:96572767-96572786 None:intergenic 45.0%
ACAGGTTTGCCTCCATACAT+GGG - Chr1:96573052-96573071 MsG0180005820.01.T01:CDS 45.0%
AGCTGAGCCAATAACCAACA+TGG + Chr1:96573629-96573648 None:intergenic 45.0%
AGCTGCTGGAGTTGCATTTA+TGG - Chr1:96573645-96573664 MsG0180005820.01.T01:intron 45.0%
ATATCAGCTATGGGTTTGGG+AGG - Chr1:96574068-96574087 MsG0180005820.01.T01:CDS 45.0%
ATTCCCTTTGTGCAGGTTAG+CGG - Chr1:96573784-96573803 MsG0180005820.01.T01:intron 45.0%
CTGCTGGAGTTGCATTTATG+GGG - Chr1:96573647-96573666 MsG0180005820.01.T01:intron 45.0%
GAACCTCAGCTAGAGTTGTA+GGG + Chr1:96573879-96573898 None:intergenic 45.0%
GAGGTGAGATAAGCTCATCT+TGG - Chr1:96574087-96574106 MsG0180005820.01.T01:CDS 45.0%
GAGTGGAACAGCTAGAGAAA+TGG + Chr1:96572774-96572793 None:intergenic 45.0%
GCTGCTGGAGTTGCATTTAT+GGG - Chr1:96573646-96573665 MsG0180005820.01.T01:intron 45.0%
GTCGTTTATTCCCTTTGTGC+AGG - Chr1:96573777-96573796 MsG0180005820.01.T01:intron 45.0%
GTTCAGTGAAGCTAATGGCA+AGG - Chr1:96572920-96572939 MsG0180005820.01.T01:intron 45.0%
GTTGTGGTAACATCGCCTAT+AGG + Chr1:96572463-96572482 None:intergenic 45.0%
TCAGTGAAGCTAATGGCAAG+GGG - Chr1:96572922-96572941 MsG0180005820.01.T01:intron 45.0%
TCCATGGTTGCTGCAACAAT+GGG - Chr1:96573527-96573546 MsG0180005820.01.T01:intron 45.0%
TCGCTCTAATGTCCTTGACT+AGG - Chr1:96572792-96572811 MsG0180005820.01.T01:intron 45.0%
TGCCAGAACTCAGAATCTTG+AGG + Chr1:96573574-96573593 None:intergenic 45.0%
TGGAGTTGCATTTATGGGGA+TGG - Chr1:96573651-96573670 MsG0180005820.01.T01:intron 45.0%
TTCCATGGTTGCTGCAACAA+TGG - Chr1:96573526-96573545 MsG0180005820.01.T01:intron 45.0%
TTCGTAGTGCAAGTTGCCAT+AGG - Chr1:96573993-96574012 MsG0180005820.01.T01:intron 45.0%
TTGTAGGGAGGGAAATGTTG+AGG + Chr1:96573864-96573883 None:intergenic 45.0%
! ACGGTGATGTTTTTCCAGCT+TGG - Chr1:96573395-96573414 MsG0180005820.01.T01:intron 45.0%
! GAGGAAAGCTTGTTTCTCAG+TGG - Chr1:96572988-96573007 MsG0180005820.01.T01:CDS 45.0%
! GCAGGATTCTTCCGATGTTT+TGG - Chr1:96572944-96572963 MsG0180005820.01.T01:intron 45.0%
! GCTGAGGTTCCTTTTCTTTC+TGG - Chr1:96573889-96573908 MsG0180005820.01.T01:intron 45.0%
! GCTTGTTTCTCAGTGGGTTT+AGG - Chr1:96572995-96573014 MsG0180005820.01.T01:CDS 45.0%
! GTGATGTTTTTCCAGCTTGG+AGG - Chr1:96573398-96573417 MsG0180005820.01.T01:intron 45.0%
!! GTTGCATTTTGTGCTGGTAC+TGG - Chr1:96573598-96573617 MsG0180005820.01.T01:intron 45.0%
AAAGCCGCTAACCTGCACAA+AGG + Chr1:96573791-96573810 None:intergenic 50.0%
AAGCCGCTAACCTGCACAAA+GGG + Chr1:96573790-96573809 None:intergenic 50.0%
AGCAACATCCCCATGTATGG+AGG + Chr1:96573064-96573083 None:intergenic 50.0%
CACAGGTTTGCCTCCATACA+TGG - Chr1:96573051-96573070 MsG0180005820.01.T01:CDS 50.0%
CAGGTTTGCCTCCATACATG+GGG - Chr1:96573053-96573072 MsG0180005820.01.T01:CDS 50.0%
CCAAGCAACATCCCCATGTA+TGG + Chr1:96573067-96573086 None:intergenic 50.0%
CCATACATGGGGATGTTGCT+TGG - Chr1:96573064-96573083 MsG0180005820.01.T01:CDS 50.0%
CTCAGCTAGAGTTGTAGGGA+GGG + Chr1:96573875-96573894 None:intergenic 50.0%
GGAACCTCAGCTAGAGTTGT+AGG + Chr1:96573880-96573899 None:intergenic 50.0%
GTAATAGCAGCAAATGCGGG+TGG - Chr1:96572427-96572446 MsG0180005820.01.T01:CDS 50.0%
GTATGGAGGCAAACCTGTGA+CGG + Chr1:96573050-96573069 None:intergenic 50.0%
GTCAAGGACATTAGAGCGAG+TGG + Chr1:96572791-96572810 None:intergenic 50.0%
TCCCATTGTTGCAGCAACCA+TGG + Chr1:96573531-96573550 None:intergenic 50.0%
TCCTCTCATTGGATTCGTCC+CGG - Chr1:96574148-96574167 MsG0180005820.01.T01:intron 50.0%
TCTGAACAGATGGCTCCTAG+AGG - Chr1:96572969-96572988 MsG0180005820.01.T01:intron 50.0%
TGGAGGCAGCAGGTATTCTT+CGG - Chr1:96573415-96573434 MsG0180005820.01.T01:intron 50.0%
! ATGGGGATGTTGCTTGGACT+TGG - Chr1:96573070-96573089 MsG0180005820.01.T01:CDS 50.0%
! GCTTTTGCAGGTTATGCTGC+AGG - Chr1:96573811-96573830 MsG0180005820.01.T01:intron 50.0%
! GGCGGATCCATGTTGGTTAT+TGG - Chr1:96573619-96573638 MsG0180005820.01.T01:intron 50.0%
! TGGGGATGTTGCTTGGACTT+GGG - Chr1:96573071-96573090 MsG0180005820.01.T01:CDS 50.0%
!! GCATTTTGTGCTGGTACTGG+CGG - Chr1:96573601-96573620 MsG0180005820.01.T01:intron 50.0%
!! GTTAGCGGCTTTGCTTTTGC+AGG - Chr1:96573799-96573818 MsG0180005820.01.T01:intron 50.0%
!! TTGGTTATTGGCTCAGCTGC+TGG - Chr1:96573631-96573650 MsG0180005820.01.T01:intron 50.0%
AATACCTGCTGCCTCCAAGC+TGG + Chr1:96573412-96573431 None:intergenic 55.0%
ATTCAGCACTAGCGACACCC+CGG - Chr1:96572633-96572652 MsG0180005820.01.T01:intron 55.0%
CCTCAGCTAGAGTTGTAGGG+AGG + Chr1:96573876-96573895 None:intergenic 55.0%
CCTCCCTACAACTCTAGCTG+AGG - Chr1:96573873-96573892 MsG0180005820.01.T01:intron 55.0%
CTGTGACGGCCTTGAACACT+GGG + Chr1:96573036-96573055 None:intergenic 55.0%
GAGTCGTGGCACCAAAAGCA+GGG - Chr1:96573942-96573961 MsG0180005820.01.T01:intron 55.0%
GGAGGCAGCAGGTATTCTTC+GGG - Chr1:96573416-96573435 MsG0180005820.01.T01:intron 55.0%
GGGCATTCCGACATGACATG+AGG + Chr1:96574193-96574212 None:intergenic 55.0%
GGTGGTGCATGGACTCCTAT+AGG - Chr1:96572445-96572464 MsG0180005820.01.T01:CDS 55.0%
TCCGGGACGAATCCAATGAG+AGG + Chr1:96574152-96574171 None:intergenic 55.0%
TGAAGCTAATGGCAAGGGGC+AGG - Chr1:96572926-96572945 MsG0180005820.01.T01:intron 55.0%
TGAGTCGTGGCACCAAAAGC+AGG - Chr1:96573941-96573960 MsG0180005820.01.T01:intron 55.0%
! GGGGATGTTGCTTGGACTTG+GGG - Chr1:96573072-96573091 MsG0180005820.01.T01:CDS 55.0%
! TGCTTGGACTTGGGGTGCTT+TGG - Chr1:96573080-96573099 MsG0180005820.01.T01:CDS 55.0%
! TTTTCCAGCTTGGAGGCAGC+AGG - Chr1:96573405-96573424 MsG0180005820.01.T01:intron 55.0%
!! TGGTACTGGCGGATCCATGT+TGG - Chr1:96573612-96573631 MsG0180005820.01.T01:intron 55.0%
CAGCAAATGCGGGTGGTGCA+TGG - Chr1:96572434-96572453 MsG0180005820.01.T01:CDS 60.0%
CCAGTGTTCAAGGCCGTCAC+AGG - Chr1:96573034-96573053 MsG0180005820.01.T01:CDS 60.0%
CCTGTGACGGCCTTGAACAC+TGG + Chr1:96573037-96573056 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96572266 96574268 96572266 ID=MsG0180005820.01;Name=MsG0180005820.01
Chr1 mRNA 96572266 96574268 96572266 ID=MsG0180005820.01.T01;Parent=MsG0180005820.01;Name=MsG0180005820.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0.42|0.25|1|0.85|0.87|8|0|264
Chr1 exon 96574240 96574268 96574240 ID=MsG0180005820.01.T01:exon:10634;Parent=MsG0180005820.01.T01
Chr1 exon 96574006 96574126 96574006 ID=MsG0180005820.01.T01:exon:10633;Parent=MsG0180005820.01.T01
Chr1 exon 96573721 96573782 96573721 ID=MsG0180005820.01.T01:exon:10632;Parent=MsG0180005820.01.T01
Chr1 exon 96573528 96573608 96573528 ID=MsG0180005820.01.T01:exon:10631;Parent=MsG0180005820.01.T01
Chr1 exon 96572982 96573121 96572982 ID=MsG0180005820.01.T01:exon:10630;Parent=MsG0180005820.01.T01
Chr1 exon 96572829 96572887 96572829 ID=MsG0180005820.01.T01:exon:10629;Parent=MsG0180005820.01.T01
Chr1 exon 96572640 96572735 96572640 ID=MsG0180005820.01.T01:exon:10628;Parent=MsG0180005820.01.T01
Chr1 exon 96572266 96572472 96572266 ID=MsG0180005820.01.T01:exon:10627;Parent=MsG0180005820.01.T01
Chr1 CDS 96574240 96574268 96574240 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96574006 96574126 96574006 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96573721 96573782 96573721 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96573528 96573608 96573528 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96572982 96573121 96572982 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96572829 96572887 96572829 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96572640 96572735 96572640 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Chr1 CDS 96572266 96572472 96572266 ID=MsG0180005820.01.T01:cds;Parent=MsG0180005820.01.T01
Gene Sequence

>MsG0180005820.01.T01

ATGGACAGGGAATTCATGCATCACATACGGATACTTGGAGCTGTTGTTGTAATAGCAGCAAATGCGGGTGGTGCATGGACTCCTATAGGCGATGTTACCACAACTATGCTGTGGATACATGGCCAAATAACTACGGTGCAAACAATGAAGGGATTGTTTCTGCCTTCAGCCATTTCTCTAGCTGTTCCACTCGCTCTAATGTCCTTGACTAGTGAAGCTAATGGCAAGGGGCAGGATTCTTCCGATGTTTTGGCATCTGAACAGATGGCTCCTAGAGGAAAGCTTGTTTCTCACTTGGAGGCAGCAGGTATTCTTCGGGAAATAGCAAATTACCTTGATGCGCATGTCCAAAATAGTGAACTGATTGCAAGTGCTATTGGAGTCATATCTGCAATTATAGACAATGTTCCATGGTTGCTGCAACAATGGGAATCTGCTGGAGTTGCATTTATGGGGATGGAAAAGGTGGACTTCTTTTGGTACTTTAAAAAGGTTAGCGGCTTTGCTTTTGCAGGTTATGCTGCAGGTATTGCCGCGTATTTAGCTGTTCATAACCTCAACATTTCCCTCCCTACAACTCTAGCTGAGGGAGCAATATCAGCTATGGGTTTGGGAGGTGAGATAAGCTCATCTTGGCCATCCATGCATTGTAAGATTGAATGGTTAAGATTAATTCCTCTCATTGGATTCGTCCCGGATATTGTTCCTACAATGTACCTCATGTCATGTCGGAATGCCCTGAGATATTATTTGCAACATGAGGATTCAACAGTTGAAACACAACCCAGCAAATGA

Protein sequence

>MsG0180005820.01.T01

MDREFMHHIRILGAVVVIAANAGGAWTPIGDVTTTMLWIHGQITTVQTMKGLFLPSAISLAVPLALMSLTSEANGKGQDSSDVLASEQMAPRGKLVSHLEAAGILREIANYLDAHVQNSELIASAIGVISAIIDNVPWLLQQWESAGVAFMGMEKVDFFWYFKKVSGFAFAGYAAGIAAYLAVHNLNISLPTTLAEGAISAMGLGGEISSSWPSMHCKIEWLRLIPLIGFVPDIVPTMYLMSCRNALRYYLQHEDSTVETQPSK*