AlfalfaGEDB | Msa0437560

M. sativa cultivar zhongmu-4 / Msa0437560

KEGG: -
GO: -
PFAM: PF12819.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0437560	XP_003614253.1	90.537	782	63	4	28	804	33	808	0.0	1447

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0437560	sp\|Q9SCZ4\|FERON_ARATH	43.424	806	390	20	35	793	32	818	0.0	604

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0437560	G7JY52	90.537	782	63	4	28	804	33	808	0.0	1447

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0437560	-0.807402	5.144204e-50	-8.615850e-47
Msa0003700	Msa0437560	0.804876	1.749868e-49	-8.615850e-47
Msa0003890	Msa0437560	0.819556	1.091864e-52	-8.615850e-47
Msa0006070	Msa0437560	0.805398	1.361180e-49	-8.615850e-47
Msa0006110	Msa0437560	0.846196	2.527677e-59	-8.615850e-47
Msa0007080	Msa0437560	0.801298	9.616304e-49	-8.615850e-47
Msa0011500	Msa0437560	0.821832	3.273023e-53	-8.615850e-47
Msa0012060	Msa0437560	0.815116	1.090081e-51	-8.615850e-47
Msa0015390	Msa0437560	0.809965	1.457950e-50	-8.615850e-47
Msa0017510	Msa0437560	0.853124	2.940020e-61	-8.615850e-47

Showing 1 to 10 of 545 entries

Previous1 2 3 4 5…55Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0437560	MtrunA17_Chr5g0420181	90.537	782	63	4	28	804	19	794	0.0	1445
Msa0437560	MtrunA17_Chr5g0420161	91.769	571	41	3	239	804	1	570	0.0	1077
Msa0437560	MtrunA17_Chr7g0245131	43.243	814	383	21	35	793	28	817	0.0	598
Msa0437560	MtrunA17_Chr5g0420151	42.079	808	412	21	34	804	29	817	0.0	559
Msa0437560	MtrunA17_Chr5g0420171	40.149	807	407	22	34	804	29	795	7.10e-176	526
Msa0437560	MtrunA17_Chr1g0190581	37.424	823	427	23	37	804	27	816	1.01e-164	499
Msa0437560	MtrunA17_Chr4g0025961	39.474	798	428	23	37	796	34	814	4.84e-164	498
Msa0437560	MtrunA17_Chr6g0455321	37.691	849	423	28	16	796	11	821	1.32e-160	489
Msa0437560	MtrunA17_Chr7g0274261	37.212	825	442	23	14	794	19	811	2.74e-158	483
Msa0437560	MtrunA17_Chr7g0219611	39.750	800	416	27	35	797	32	802	7.15e-158	481

Showing 1 to 10 of 506 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0437560	AT3G51550.1	43.424	806	390	20	35	793	32	818	0.0	604
Msa0437560	AT5G39000.1	39.879	825	411	28	31	804	24	814	2.25e-174	525
Msa0437560	AT3G04690.1	39.379	805	405	26	39	794	29	799	2.39e-170	513
Msa0437560	AT5G38990.1	39.573	844	427	28	17	804	5	821	8.86e-169	510
Msa0437560	AT5G28680.1	38.489	834	414	30	18	794	12	803	1.02e-167	507
Msa0437560	AT5G28680.2	38.489	834	414	30	18	794	12	803	1.02e-167	507
Msa0437560	AT1G30570.1	37.910	823	428	25	16	791	13	799	2.65e-153	469
Msa0437560	AT5G24010.1	38.020	818	415	28	13	791	4	768	3.41e-151	463
Msa0437560	AT3G46290.1	35.741	803	430	25	35	803	27	777	7.93e-146	449
Msa0437560	AT2G21480.1	36.536	791	441	23	35	797	53	810	2.19e-143	444

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 152 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTAGAGATTTGTGT+TGG	0.554926	3_3:+1351737	Msa0437560:CDS
AAAAGTGATGTTTATTCATT+TGG	0.232022	3_3:+1351989	Msa0437560:CDS
AAACTACAACCTTATCAGCA+TGG	0.600127	3_3:-1348370	None:intergenic
AAAGGAATCATCATGCTTGA+TGG	0.420615	3_3:+1351491	Msa0437560:CDS
AAAGGGAATGAGTAGGTCAA+TGG	0.421762	3_3:-1350222	None:intergenic
AAAGTCGTCGAACATATTAT+TGG	0.285768	3_3:+1351823	Msa0437560:CDS
AAAGTGATGTTTATTCATTT+GGG	0.283274	3_3:+1351990	Msa0437560:CDS
AAATTGTTAACAAGAGTGTA+AGG	0.479691	3_3:-1350348	None:intergenic
AACAGAAGCAACCACTTTCA+TGG	0.369985	3_3:+1351711	Msa0437560:CDS
AACCCAAAATCTGCAACCTT+CGG	0.521634	3_3:-1351860	None:intergenic

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAAAATCGGCATAACAA+TGG	-	chr3_3:1348672-1348691	None:intergenic	30.0%
CAAATAAAGTGCAGAACATA+AGG	+	chr3_3:1348758-1348777	Msa0437560:intron	30.0%
AATCACAACTTTGCAGATAA+AGG	+	chr3_3:1348783-1348802	Msa0437560:intron	30.0%
CAACATACAATGGTGTAAAT+TGG	+	chr3_3:1350067-1350086	Msa0437560:CDS	30.0%
TACAATGGTGTAAATTGGAT+AGG	+	chr3_3:1350072-1350091	Msa0437560:CDS	30.0%
TTTGACCGAAAAATAGGAAT+TGG	-	chr3_3:1350322-1350341	None:intergenic	30.0%
GATGTTAACAAAGAAATCCT+TGG	-	chr3_3:1350418-1350437	None:intergenic	30.0%
GATGATATCAACTACATATC+TGG	+	chr3_3:1350681-1350700	Msa0437560:CDS	30.0%
GGTAACAGATATTAATCAGA+GGG	+	chr3_3:1350935-1350954	Msa0437560:CDS	30.0%
GAAATTGGATTTAGTTGCTT+TGG	+	chr3_3:1350995-1351014	Msa0437560:CDS	30.0%

Showing 1 to 10 of 234 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	1348350	1352339	1348350	ID=Msa0437560;Name=Msa0437560
chr3_3	mRNA	1348350	1352339	1348350	ID=Msa0437560-mRNA-1;Parent=Msa0437560;Name=Msa0437560-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|805
chr3_3	exon	1348350	1348382	1348350	ID=Msa0437560-mRNA-1:exon:105;Parent=Msa0437560-mRNA-1
chr3_3	exon	1349955	1352339	1349955	ID=Msa0437560-mRNA-1:exon:106;Parent=Msa0437560-mRNA-1
chr3_3	CDS	1348350	1348382	1348350	ID=Msa0437560-mRNA-1:cds;Parent=Msa0437560-mRNA-1
chr3_3	CDS	1349955	1352339	1349955	ID=Msa0437560-mRNA-1:cds;Parent=Msa0437560-mRNA-1

Gene Sequence

>Msa0437560

ATGTTTCAAGCTAGATCCGCCCATGCTGATAAGACACCTCTTAATATTGTTCTTCTTCTTTTCTTCATTCATTTAACATCTTGTGATGATTCTACAAACATCCCTTCAGACAAAATCCTCCTTAACTGTGGTTCATCTGGATCATCAACATACAATGGTGTAAATTGGATAGGAGACATTGGAACACCTTTCTTACCTCAACCATATGACACAACTTCATCAACAACAAACTTACTCTCAAACACATACGAAGTAGCACCAAAAATCCCATATTCAACTGCAAGAATAATTCATCATTCTCCATTGACCTACTCATTCCCTTTCTCTTCCAAAGGCCTTAAATTCATTCGTTTATACTTTCTCTCAACTTCATATTTACCAATAGAGTATTCAAATTCCAATTCCTATTTTTCGGTCAAATCCGGTCCTTACACTCTTGTTAACAATTTTAATCCATTACTTGCTTCAGAAGAAATCAACTCACCTTATATTACCAAGGATTTCTTTGTTAACATCAATGAAAAGAAACTCAACATTACTTTCACTCCATCTCCTCAAATTCACAAAGCTTTTGCTTTTATAAATGGAATTGAAATATTCTCAGTACCTAACAAATTATTCTCTCATGCTTCAAATTACAAGGTTCATGTTCCTTACCTTGGACACAAAGAATCGCTTATTATCAACGCTGAATATGCTTTTGAGAAGCTTTACATGGTCAACATGGGTAATAGTAAAAATGCATTTGGGTCATGGTTAGATGATATCAACTACATATCTGGTTCACAAGCTGGAACTACTCTTAACTGTAAGGGTGCTAGTAATATGAATCAACGTTTTCTCGATTCAAATGACTATAACTATTCAGCACCTGAAGAATTATATTGGTCTGCAAGAACAATGAGTGGTAGCAATGGTGATTCCAACATGAGGTACAATCTAACATGGTCATTTAGTGTTGATTCTGGATTCAAGTACCTTGTTAGGCTTCATTTCTGTGAGATATCGATGTCGGTAACAGATATTAATCAGAGGGTGTTTGGTGTTTATATAAACAACCAGACAGCAGAGGAGAAATTGGATTTAGTTGCTTTGGCTGGTGAACCTTTTACTCCTTTGTATAGAGACTATGTTGTAATGGTTTCTGTAGAGACTATGTTGATCTCACTTCATCCTAATTTGGAGTCAAAACCAAAGTATGCTGATGCTATATTGAATGGTGTTGAGATTATCAAGTTAAGTGATAGCAATTTTAATCTTGCTGCAAGTTTCCAATTGAAGAATGAAAGATTACACAATAAGAATAAATTTCCAATTTTTATTGTTGTTGTAGCCAGTACTTTAGGTTCCTCTTTGGGACTTTTCATAACATTTTTCATTCTTAGAAGAAAAGGGTGGACAGTAATAAAAAGGGGAACTTTGAATTCTACTGCAAAAGGTGAAGAAAAGATTCAAGTAAAAGTGATATCAGGTAATTGTTATCAATTCACTTTAGCAGAGATTATATCAGCAACAAATAACTTCAGTGATGATCTTGTAATTGGTGAAGGTGGTTTTGGAAAGGTATACAAAGGAATCATCATGCTTGATGGAGCGACTAATGTGGCGATAAAGCGCGCAAAACCAAGTTCACGGCAAGGACTTAAGGAATTTCAAAATGAGATCAATTTTCATTCATTTTATCACATGAATTTAGTGTCATTGTTGGGCTACTGCCAAGAGAGCATTGAACTTATACTTGTGTATGAATACATGGATCAAGGTCCACTTTGTGATCATTTATACAAGAAACAGAAGCAACCACTTTCATGGAATAAAAGACTAGAGATTTGTGTTGGTGCAGCTAGAGGAATCCATTACCTTCATACAGGTAGAAAGAATCCAGTGATTCATCGTGATATAAAGTCGTCGAACATATTATTGGATCAGAATTTGGTACCGAAGGTTGCAGATTTTGGGTTGTCTAGAATGGTTAACTCTATTTACCACACTCATGTTAGCACCGAGGTTAAAGGTACATTTGGATATTTAGACCCTGAGTACTATAAGAGAAGAAAAGTAAGTGAAAAAAGTGATGTTTATTCATTTGGGGTGGTTTTGTTTGAAGTGTTGAGTGGAAGACCAGCAGTGAATTCTCTGGCAGTGGAAGAGGAAAATGAGAAAGTTGGTTTGGTAGAATGGGCCTTGAGTTGTTACCAAAGTGGAACTATTGATAAATTGGTTGATTCTTGTTTAGAAGGAAAAATAGGGCAAGAATGCTTAATGGCCTTTGTGGAAATTGGTGTTAAGTGCTTGGCTAGCAAGAGTTCAGAAAGGCCAACTATGGGAGAGGTGGTCAGTAATTTGGAGAAAATTCTTTCCTTGCAAGAGAGTTTGGAGGGACAGGAGGAAATCAACACAGATTATATGGATACATAG

Protein sequence

>Msa0437560

MFQARSAHADKTPLNIVLLLFFIHLTSCDDSTNIPSDKILLNCGSSGSSTYNGVNWIGDIGTPFLPQPYDTTSSTTNLLSNTYEVAPKIPYSTARIIHHSPLTYSFPFSSKGLKFIRLYFLSTSYLPIEYSNSNSYFSVKSGPYTLVNNFNPLLASEEINSPYITKDFFVNINEKKLNITFTPSPQIHKAFAFINGIEIFSVPNKLFSHASNYKVHVPYLGHKESLIINAEYAFEKLYMVNMGNSKNAFGSWLDDINYISGSQAGTTLNCKGASNMNQRFLDSNDYNYSAPEELYWSARTMSGSNGDSNMRYNLTWSFSVDSGFKYLVRLHFCEISMSVTDINQRVFGVYINNQTAEEKLDLVALAGEPFTPLYRDYVVMVSVETMLISLHPNLESKPKYADAILNGVEIIKLSDSNFNLAASFQLKNERLHNKNKFPIFIVVVASTLGSSLGLFITFFILRRKGWTVIKRGTLNSTAKGEEKIQVKVISGNCYQFTLAEIISATNNFSDDLVIGEGGFGKVYKGIIMLDGATNVAIKRAKPSSRQGLKEFQNEINFHSFYHMNLVSLLGYCQESIELILVYEYMDQGPLCDHLYKKQKQPLSWNKRLEICVGAARGIHYLHTGRKNPVIHRDIKSSNILLDQNLVPKVADFGLSRMVNSIYHTHVSTEVKGTFGYLDPEYYKRRKVSEKSDVYSFGVVLFEVLSGRPAVNSLAVEEENEKVGLVEWALSCYQSGTIDKLVDSCLEGKIGQECLMAFVEIGVKCLASKSSERPTMGEVVSNLEKILSLQESLEGQEEINTDYMDT*