AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156530 MtrunA17_Chr7g0249951 99.324 444 3 0 1 444 1 444 0.0 902
Msa1156530 MtrunA17_Chr4g0045891 66.265 415 132 5 24 437 43 450 0.0 566
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156530 AT5G48370.1 79.572 421 83 2 21 439 7 426 0.0 680
Msa1156530 AT5G48370.2 79.714 419 83 2 21 438 7 424 0.0 679
Msa1156530 AT2G30720.1 65.000 420 140 4 18 436 36 449 0.0 560
Msa1156530 AT5G48370.3 80.323 310 60 1 130 438 5 314 7.25e-180 505

Find 126 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAGTTGGTTCTGTTATA+TGG 0.116993 7_4:-44792436 Msa1156530:CDS
TATATTTCTACTAGCATTAT+AGG 0.181025 7_4:-44790778 Msa1156530:three_prime_UTR
AACATCCATGGTCGAATATT+TGG 0.228159 7_4:-44791633 Msa1156530:CDS
AGATCAATGTTAACAGTAAT+TGG 0.229697 7_4:+44792461 None:intergenic
GCCATAAAGCGATGGGTTTC+CGG 0.233289 7_4:+44793700 None:intergenic
ACCGGAAACCCATCGCTTTA+TGG 0.233299 7_4:-44793701 Msa1156530:CDS
CTCCGGTGACAACAGCTCTT+TGG 0.242464 7_4:-44793662 Msa1156530:CDS
TTAGGCAACATAAGTGATTT+TGG 0.244802 7_4:-44790732 Msa1156530:three_prime_UTR
CGGGAGCCGGTGACCGGAAT+AGG 0.262219 7_4:+44793726 None:intergenic
TCAACAGCTTATGCCTTTGC+TGG 0.276122 7_4:-44791573 Msa1156530:CDS
CCTAAGAAATGTACCTTGTT+TGG 0.294856 7_4:+44792370 None:intergenic
TTGTTCTTAGGGAGCAATAT+AGG 0.299391 7_4:-44793512 Msa1156530:CDS
TTGCTGTGGATGGCATATTA+AGG 0.300060 7_4:+44791659 None:intergenic
TCCGGTGACAACAGCTCTTT+GGG 0.317801 7_4:-44793661 Msa1156530:CDS
CTAATTAAAATGTGTACCTT+TGG 0.336995 7_4:-44790886 Msa1156530:three_prime_UTR
GCTTGAAGATCTTGATGCTT+TGG 0.338962 7_4:-44793457 Msa1156530:CDS
CGTGCTTCTTCTTCTGTTGC+CGG 0.340030 7_4:+44790992 None:intergenic
GGCTGGAACCATTTCTGTTA+AGG 0.348082 7_4:-44793436 Msa1156530:intron
AAACTTGTGCCCTCAATAAC+TGG 0.348495 7_4:+44790805 None:intergenic
ACCGAGACAGCATTCTTCTA+AGG 0.353771 7_4:-44791701 Msa1156530:CDS
CATCTATACGCTCTAATATA+CGG 0.355421 7_4:+44790969 None:intergenic
TGTTCTTAGGGAGCAATATA+GGG 0.360689 7_4:-44793511 Msa1156530:CDS
CTTTGTGGAGGAGCATCTCT+TGG 0.362465 7_4:+44793600 None:intergenic
GGGATCCTTGGAATGATGTT+AGG 0.369029 7_4:-44793491 Msa1156530:CDS
AATAGTTGGTTCTGTTATAT+GGG 0.372934 7_4:-44792435 Msa1156530:CDS
AACATTGATCTCACAATAGT+TGG 0.381992 7_4:-44792449 Msa1156530:CDS
TGTTAGTTGAAGTCTTAATC+AGG 0.387659 7_4:-44790705 Msa1156530:three_prime_UTR
ATCATAAGGATCACAAAGTA+TGG 0.393137 7_4:+44790544 None:intergenic
TTGGTTCTGTTATATGGGTT+GGG 0.395985 7_4:-44792430 Msa1156530:CDS
ACATTGATAAGTGGCTGATC+TGG 0.398752 7_4:+44791276 None:intergenic
ACATGGCACCTTAACAGAAA+TGG 0.399236 7_4:+44793428 None:intergenic
GGGTTTCCGGTCGCGGGAGC+CGG 0.405885 7_4:+44793713 None:intergenic
GTTGGTTCTGTTATATGGGT+TGG 0.413692 7_4:-44792431 Msa1156530:CDS
GAAGATCTTGATGCTTTGGC+TGG 0.414526 7_4:-44793453 Msa1156530:CDS
TGCTCCTCCACAAAGTGAAT+TGG 0.422333 7_4:-44793592 Msa1156530:CDS
GATGAATCGTGCGTTTGAAT+TGG 0.436637 7_4:-44791601 Msa1156530:CDS
CGGTCGCGGGAGCCGGTGAC+CGG 0.439783 7_4:+44793720 None:intergenic
GACGTACAGTGAAAGTGAAA+TGG 0.440668 7_4:+44791062 None:intergenic
AAATTCTACCCTCAGCCAAT+AGG 0.440959 7_4:+44791748 None:intergenic
TATGATTCAATTTCTAATGC+AGG 0.441295 7_4:+44790594 None:intergenic
CCTTGGAATGATGTTAGGAT+TGG 0.450991 7_4:-44793486 Msa1156530:CDS
CACATTCGAAAACCCTATTC+CGG 0.452536 7_4:-44793739 Msa1156530:CDS
GGGAGCCGGTGACCGGAATA+GGG 0.452753 7_4:+44793727 None:intergenic
AATTGTGATGGTGCTGTTGT+TGG 0.461367 7_4:+44793791 None:intergenic
CTCGAGTTGAATTTCTATTG+AGG 0.466332 7_4:+44792403 None:intergenic
AAGCGATGGGTTTCCGGTCG+CGG 0.467733 7_4:+44793706 None:intergenic
ATAATGCTAGTAGAAATATA+TGG 0.468153 7_4:+44790781 None:intergenic
AAACCCATCGCTTTATGGCC+GGG 0.471066 7_4:-44793696 Msa1156530:CDS
ATTCTGATGTCCAGTTATTG+AGG 0.471164 7_4:-44790815 Msa1156530:three_prime_UTR
TGATCAACTTCTAGAAAGTA+AGG 0.472016 7_4:+44791543 None:intergenic
TGTGGAGGAGCATCTCTTGG+TGG 0.474211 7_4:+44793603 None:intergenic
GGATGTTCCTTTGCTGTGGA+TGG 0.474308 7_4:+44791649 None:intergenic
GAGCTGTTGTCACCGGAGAA+TGG 0.477891 7_4:+44793667 None:intergenic
GGGAGCAATATAGGGATCCT+TGG 0.479064 7_4:-44793503 Msa1156530:CDS
GCCGGGGATGTTCCATTCTC+CGG 0.480371 7_4:-44793679 Msa1156530:CDS
AATCATAAATCAATGGTATG+AGG 0.481399 7_4:-44790578 Msa1156530:three_prime_UTR
CGGTCACCGGCTCCCGCGAC+CGG 0.482291 7_4:-44793719 Msa1156530:CDS
GAAACCCATCGCTTTATGGC+CGG 0.483862 7_4:-44793697 Msa1156530:CDS
CTAGTAACCAATTCACTTTG+TGG 0.484531 7_4:+44793585 None:intergenic
CTGTCTCGGTCGGCTAAGGC+TGG 0.490377 7_4:+44791714 None:intergenic
TTCTGATGTCCAGTTATTGA+GGG 0.493277 7_4:-44790814 Msa1156530:three_prime_UTR
CCTTATGATGCTCATACTCA+TGG 0.497963 7_4:-44790530 Msa1156530:three_prime_UTR
CCCTTAGAAGAATGCTGTCT+CGG 0.503877 7_4:+44791700 None:intergenic
GAAGCAGTAACAAGTATAAG+TGG 0.504808 7_4:+44792509 None:intergenic
ACAGGGATTGTTCCATTCAC+AGG 0.507244 7_4:+44793768 None:intergenic
ATCCATGGTCGAATATTTGG+AGG 0.508984 7_4:-44791630 Msa1156530:CDS
CTGATCTGGATCGTGAAGTT+CGG 0.509073 7_4:+44791290 None:intergenic
GAAGAGAAACAGCAATTAGC+TGG 0.509375 7_4:-44790913 Msa1156530:three_prime_UTR
CACTGTACGTCCAGAGGCAA+AGG 0.509487 7_4:-44791050 Msa1156530:CDS
AATGCTGTCTCGGTCGGCTA+AGG 0.512532 7_4:+44791710 None:intergenic
TCTGGCGAAAGTCGATTCAC+TGG 0.513098 7_4:+44791888 None:intergenic
GAAATTGAATCATAAATCAA+TGG 0.515473 7_4:-44790585 Msa1156530:three_prime_UTR
ACCTCGCTAGATCGCAGCTC+GGG 0.517111 7_4:+44791228 None:intergenic
ACCATCACAATTCCTGTGAA+TGG 0.520660 7_4:-44793780 Msa1156530:CDS
CCATGAGTATGAGCATCATA+AGG 0.524375 7_4:+44790530 None:intergenic
AACCCATCGCTTTATGGCCG+GGG 0.525718 7_4:-44793695 Msa1156530:CDS
CAACAGCTCTTTGGGAAGCA+AGG 0.527109 7_4:-44793653 Msa1156530:CDS
AACTGCTAAACAGGTTGATG+TGG 0.527926 7_4:-44791349 Msa1156530:intron
AACAGCTCTTTGGGAAGCAA+GGG 0.531781 7_4:-44793652 Msa1156530:CDS
TCCCAAAGAGCTGTTGTCAC+CGG 0.533108 7_4:+44793660 None:intergenic
TTTACATGCAGTTTAGCTGA+AGG 0.539136 7_4:-44790675 Msa1156530:three_prime_UTR
ACTTAAAGACCTATTGGCTG+AGG 0.541316 7_4:-44791757 Msa1156530:CDS
TATTAAGGAGTTCTCAAGGC+TGG 0.544239 7_4:+44791674 None:intergenic
AGAATCATTTAGAACAGCAA+TGG 0.544578 7_4:-44793832 Msa1156530:exon
CCTTGTTGTGCTATCCTCAT+CGG 0.544585 7_4:+44792532 None:intergenic
ACAACTTCAACATTGATAAG+TGG 0.548116 7_4:+44791267 None:intergenic
TCGAGCGACAAATATGAAGT+TGG 0.550750 7_4:+44791935 None:intergenic
ACCGGAGAATGGAACATCCC+CGG 0.551638 7_4:+44793678 None:intergenic
TACTAGTCCTACTCTGTGAA+GGG 0.555709 7_4:+44793559 None:intergenic
TAAACTTCGAAATGTAGTAC+CGG 0.557369 7_4:-44791011 Msa1156530:CDS
CACTTTCACTGTACGTCCAG+AGG 0.557804 7_4:-44791056 Msa1156530:CDS
TATGTTGCCTAAGCACGAGT+TGG 0.560181 7_4:+44790743 None:intergenic
AAAGAAAGACCATGAGAATG+AGG 0.563142 7_4:-44791790 Msa1156530:CDS
AACCTCGCTAGATCGCAGCT+CGG 0.570253 7_4:+44791227 None:intergenic
CTTGTCATCTTATAATGACA+TGG 0.571094 7_4:+44790643 None:intergenic
ATACTAGTCCTACTCTGTGA+AGG 0.576533 7_4:+44793558 None:intergenic
CTCAATAGAAATTCAACTCG+AGG 0.576580 7_4:-44792402 Msa1156530:CDS
CATCCCCGGCCATAAAGCGA+TGG 0.579415 7_4:+44793692 None:intergenic
CCATGGATGTTCCTTTGCTG+TGG 0.580143 7_4:+44791645 None:intergenic
CCGAGACAGCATTCTTCTAA+GGG 0.581156 7_4:-44791700 Msa1156530:CDS
TAGAAGAATGCTGTCTCGGT+CGG 0.582344 7_4:+44791704 None:intergenic
CCAATCCTAACATCATTCCA+AGG 0.588050 7_4:+44793486 None:intergenic
GTGATGGTGCTGTTGTTGGA+AGG 0.592712 7_4:+44793795 None:intergenic
TTCATATAACTGAAGTCCAA+AGG 0.598027 7_4:+44790870 None:intergenic
ATCCCCGGCCATAAAGCGAT+GGG 0.600133 7_4:+44793693 None:intergenic
ATCGAAGCCAACTCGTGCTT+AGG 0.601183 7_4:-44790750 Msa1156530:three_prime_UTR
GGCATATTAAGGAGTTCTCA+AGG 0.602053 7_4:+44791670 None:intergenic
TAATATGCCATCCACAGCAA+AGG 0.609047 7_4:-44791656 Msa1156530:CDS
CTTAAAGACCTATTGGCTGA+GGG 0.610390 7_4:-44791756 Msa1156530:CDS
TTTCGAATGTGGATGAAACA+GGG 0.611988 7_4:+44793751 None:intergenic
CTAGAACCCCTTCACAGAGT+AGG 0.614208 7_4:-44793566 Msa1156530:CDS
TCCATTCACAGGAATTGTGA+TGG 0.616324 7_4:+44793779 None:intergenic
ACCCGAGCTGCGATCTAGCG+AGG 0.618963 7_4:-44791229 Msa1156530:intron
GTAAGGAACTAATCCAGCAA+AGG 0.626469 7_4:+44791560 None:intergenic
ACTGCTAAACAGGTTGATGT+GGG 0.629481 7_4:-44791348 Msa1156530:intron
GTAACCAATTCACTTTGTGG+AGG 0.635185 7_4:+44793588 None:intergenic
GAAAACCCTATTCCGGTCAC+CGG 0.635578 7_4:-44793732 Msa1156530:CDS
AACCTCCAAATATTCGACCA+TGG 0.639125 7_4:+44791628 None:intergenic
ACTAGTCCTACTCTGTGAAG+GGG 0.643244 7_4:+44793560 None:intergenic
CCACAGCAAAGGAACATCCA+TGG 0.647840 7_4:-44791645 Msa1156530:CDS
ACGTAGAGTGTTGTGTTGTG+TGG 0.651932 7_4:+44793897 None:intergenic
AAGTTCGGTGTACAAAACGC+AGG 0.655183 7_4:+44791305 None:intergenic
ACAGCTCTTTGGGAAGCAAG+GGG 0.673652 7_4:-44793651 Msa1156530:CDS
GGAATAGCACTGTTCCGATG+AGG 0.682826 7_4:-44792546 Msa1156530:intron
CCGATGAGGATAGCACAACA+AGG 0.684297 7_4:-44792532 Msa1156530:CDS
GAGGTTACTCAATCCAAACA+AGG 0.700558 7_4:-44792383 Msa1156530:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTGCTAAAAAAA+GGG + chr7_4:44790999-44791018 None:intergenic 10.0%
!! TATTAAAAATTGCTAAAAAA+AGG + chr7_4:44791000-44791019 None:intergenic 10.0%
!! TTAAAAATTGCTAAAAAAAG+GGG + chr7_4:44790998-44791017 None:intergenic 15.0%
!!! AGCAATTTTTAATATTTTTG+AGG - chr7_4:44791006-44791025 Msa1156530:CDS 15.0%
!!! AATATTTTTGAGGTTTTTAT+AGG - chr7_4:44791016-44791035 Msa1156530:CDS 15.0%
!!! TTTTATAGGAATTTATTATG+TGG - chr7_4:44791030-44791049 Msa1156530:CDS 15.0%
!! TTTATAGGAATTTATTATGT+GGG - chr7_4:44791031-44791050 Msa1156530:CDS 15.0%
!!! TGTAATTTTTTCAGTAAAAA+GGG + chr7_4:44792967-44792986 None:intergenic 15.0%
!! TAAAAATTGCTAAAAAAAGG+GGG + chr7_4:44790997-44791016 None:intergenic 20.0%
!! AATGTGATATGATTATTACA+TGG - chr7_4:44791064-44791083 Msa1156530:CDS 20.0%
!!! AATATGATGATGTGTTTAAA+TGG - chr7_4:44791239-44791258 Msa1156530:CDS 20.0%
!!! ATATGATGATGTGTTTAAAT+GGG - chr7_4:44791240-44791259 Msa1156530:CDS 20.0%
!!! AACTAAACTAGTTTTAAGTT+TGG + chr7_4:44792091-44792110 None:intergenic 20.0%
!!! CAATTTTCTCAGATTATTAT+TGG + chr7_4:44792246-44792265 None:intergenic 20.0%
!! CAAGAAACAATTTGAAAAAA+AGG - chr7_4:44792563-44792582 Msa1156530:intron 20.0%
!! AATTTGAAAAAAAGGAAAAG+AGG - chr7_4:44792571-44792590 Msa1156530:intron 20.0%
!! AAAAAAACTTAAAGACCTAT+TGG - chr7_4:44792627-44792646 Msa1156530:intron 20.0%
!!! GTGTAATTTTTTCAGTAAAA+AGG + chr7_4:44792968-44792987 None:intergenic 20.0%
!! AATAAAATTAACTGCTAAAC+AGG - chr7_4:44793032-44793051 Msa1156530:intron 20.0%
!! ATAATGCTAGTAGAAATATA+TGG + chr7_4:44793612-44793631 None:intergenic 20.0%
!!! TATATTTCTACTAGCATTAT+AGG - chr7_4:44793612-44793631 Msa1156530:CDS 20.0%
!!! CAAGTTTTACAAATTATTTG+TGG - chr7_4:44793766-44793785 Msa1156530:CDS 20.0%
!! GAAATTGAATCATAAATCAA+TGG - chr7_4:44793805-44793824 Msa1156530:CDS 20.0%
!!! GTGTGTGATTTTGTTTTTTA+AGG + chr7_4:44790527-44790546 None:intergenic 25.0%
!! TTTCATCTGATTTTGTTCTT+AGG - chr7_4:44790866-44790885 Msa1156530:three_prime_UTR 25.0%
!! TTCATCTGATTTTGTTCTTA+GGG - chr7_4:44790867-44790886 Msa1156530:three_prime_UTR 25.0%
! AAAAATTGCTAAAAAAAGGG+GGG + chr7_4:44790996-44791015 None:intergenic 25.0%
! ATGATTATTACATGGTTAAG+TGG - chr7_4:44791072-44791091 Msa1156530:CDS 25.0%
! TGATTATTACATGGTTAAGT+GGG - chr7_4:44791073-44791092 Msa1156530:CDS 25.0%
!!! GATTTGATGACAAGTAATTT+TGG - chr7_4:44791122-44791141 Msa1156530:intron 25.0%
!! TGTGTTTTTCTGATTTTTCA+AGG - chr7_4:44791182-44791201 Msa1156530:intron 25.0%
!! TTTTCATGTGAATTGATATG+TGG - chr7_4:44791205-44791224 Msa1156530:intron 25.0%
! TTTCATGTGAATTGATATGT+GGG - chr7_4:44791206-44791225 Msa1156530:intron 25.0%
!! TATGATGATGTGTTTAAATG+GGG - chr7_4:44791241-44791260 Msa1156530:CDS 25.0%
! ATGAAATTGAACTTCAAACT+AGG - chr7_4:44791276-44791295 Msa1156530:CDS 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + chr7_4:44791361-44791380 None:intergenic 25.0%
! TAAACATTTGTGAGATTGTT+TGG - chr7_4:44791396-44791415 Msa1156530:intron 25.0%
! AAACATTTGTGAGATTGTTT+GGG - chr7_4:44791397-44791416 Msa1156530:intron 25.0%
!!! CTTATTTTCATAATCTCTCT+AGG - chr7_4:44791466-44791485 Msa1156530:intron 25.0%
!! TTTTTGTCTATTCTTCCATT+AGG - chr7_4:44791704-44791723 Msa1156530:CDS 25.0%
!!! TTGACTAGTTTACTGTTATT+TGG - chr7_4:44791740-44791759 Msa1156530:CDS 25.0%
! ATCTTTATTAAAACTCACAG+TGG + chr7_4:44791783-44791802 None:intergenic 25.0%
! CTATGTTATCTTTATGTTTG+TGG - chr7_4:44791823-44791842 Msa1156530:CDS 25.0%
! AGATCAATGTTAACAGTAAT+TGG + chr7_4:44791932-44791951 None:intergenic 25.0%
!!! AATAGTTGGTTCTGTTATAT+GGG - chr7_4:44791955-44791974 Msa1156530:CDS 25.0%
!!! TTGATAATGCCATTCATAAA+GGG + chr7_4:44792150-44792169 None:intergenic 25.0%
!!! ATTGATAATGCCATTCATAA+AGG + chr7_4:44792151-44792170 None:intergenic 25.0%
! TTTATGAATGGCATTATCAA+TGG - chr7_4:44792150-44792169 Msa1156530:intron 25.0%
! CTAAAATATTAAGTCACTCT+TGG - chr7_4:44792366-44792385 Msa1156530:intron 25.0%
! AAAAAATTACACTGCATTGA+TGG - chr7_4:44792976-44792995 Msa1156530:intron 25.0%
!! AAAAATTACACTGCATTGAT+GGG - chr7_4:44792977-44792996 Msa1156530:intron 25.0%
!! TTTATTTAAGACATACAGAC+AGG + chr7_4:44793018-44793037 None:intergenic 25.0%
! TGAAATATCACTTGTCTAAT+TGG + chr7_4:44793204-44793223 None:intergenic 25.0%
! CTAATTAAAATGTGTACCTT+TGG - chr7_4:44793504-44793523 Msa1156530:CDS 25.0%
! TATGATTCAATTTCTAATGC+AGG + chr7_4:44793799-44793818 None:intergenic 25.0%
! AATCATAAATCAATGGTATG+AGG - chr7_4:44793812-44793831 Msa1156530:CDS 25.0%
! AGAATCATTTAGAACAGCAA+TGG - chr7_4:44790558-44790577 Msa1156530:three_prime_UTR 30.0%
AAAATTGCTAAAAAAAGGGG+GGG + chr7_4:44790995-44791014 None:intergenic 30.0%
!! CATGAAAATAAGGCATTGTT+TGG + chr7_4:44791627-44791646 None:intergenic 30.0%
GTCAAGACTTCATGAAAATA+AGG + chr7_4:44791637-44791656 None:intergenic 30.0%
AACATTGATCTCACAATAGT+TGG - chr7_4:44791941-44791960 Msa1156530:CDS 30.0%
!! CAATAGTTGGTTCTGTTATA+TGG - chr7_4:44791954-44791973 Msa1156530:CDS 30.0%
CAAACAAGGTACATTTCTTA+GGG - chr7_4:44792021-44792040 Msa1156530:intron 30.0%
ACACTAACAATTCAAATCGA+AGG + chr7_4:44792338-44792357 None:intergenic 30.0%
TTGAAAAAAAGGAAAAGAGG+AGG - chr7_4:44792574-44792593 Msa1156530:intron 30.0%
!!! TTTTTTCTTCCTCATTCTCA+TGG + chr7_4:44792612-44792631 None:intergenic 30.0%
! TGATCAACTTCTAGAAAGTA+AGG + chr7_4:44792850-44792869 None:intergenic 30.0%
TTCAGTAAAAAGGGCAAAAA+CGG + chr7_4:44792958-44792977 None:intergenic 30.0%
ACAACTTCAACATTGATAAG+TGG + chr7_4:44793126-44793145 None:intergenic 30.0%
! GTGATATTTCATTAGCTTGA+TGG - chr7_4:44793213-44793232 Msa1156530:intron 30.0%
TAAACTTCGAAATGTAGTAC+CGG - chr7_4:44793379-44793398 Msa1156530:intron 30.0%
CATCTATACGCTCTAATATA+CGG + chr7_4:44793424-44793443 None:intergenic 30.0%
TTCATATAACTGAAGTCCAA+AGG + chr7_4:44793523-44793542 None:intergenic 30.0%
! TTAGGCAACATAAGTGATTT+TGG - chr7_4:44793658-44793677 Msa1156530:CDS 30.0%
TGTTAGTTGAAGTCTTAATC+AGG - chr7_4:44793685-44793704 Msa1156530:CDS 30.0%
CTTGTCATCTTATAATGACA+TGG + chr7_4:44793750-44793769 None:intergenic 30.0%
ATCATAAGGATCACAAAGTA+TGG + chr7_4:44793849-44793868 None:intergenic 30.0%
TTTCGAATGTGGATGAAACA+GGG + chr7_4:44790642-44790661 None:intergenic 35.0%
! TTTTCGAATGTGGATGAAAC+AGG + chr7_4:44790643-44790662 None:intergenic 35.0%
CTAGTAACCAATTCACTTTG+TGG + chr7_4:44790808-44790827 None:intergenic 35.0%
TTGTTCTTAGGGAGCAATAT+AGG - chr7_4:44790878-44790897 Msa1156530:three_prime_UTR 35.0%
TGTTCTTAGGGAGCAATATA+GGG - chr7_4:44790879-44790898 Msa1156530:three_prime_UTR 35.0%
GAAGTGGTTGAAATCAAGTT+AGG - chr7_4:44791095-44791114 Msa1156530:intron 35.0%
TGAGACTGCATAAATTGAGT+AGG - chr7_4:44791677-44791696 Msa1156530:CDS 35.0%
GAAGCAGTAACAAGTATAAG+TGG + chr7_4:44791884-44791903 None:intergenic 35.0%
!! TTGGTTCTGTTATATGGGTT+GGG - chr7_4:44791960-44791979 Msa1156530:CDS 35.0%
!! CTCGAGTTGAATTTCTATTG+AGG + chr7_4:44791990-44792009 None:intergenic 35.0%
CTCAATAGAAATTCAACTCG+AGG - chr7_4:44791988-44792007 Msa1156530:intron 35.0%
CCTAAGAAATGTACCTTGTT+TGG + chr7_4:44792023-44792042 None:intergenic 35.0%
CCAAACAAGGTACATTTCTT+AGG - chr7_4:44792020-44792039 Msa1156530:intron 35.0%
AGAATAGTGCCCTTTATGAA+TGG - chr7_4:44792138-44792157 Msa1156530:intron 35.0%
! ATAAAGCACTAACACAGACA+CGG - chr7_4:44792198-44792217 Msa1156530:intron 35.0%
TTGAAAGTAACCACATGTGT+CGG - chr7_4:44792283-44792302 Msa1156530:intron 35.0%
AAAGAAAGACCATGAGAATG+AGG - chr7_4:44792600-44792619 Msa1156530:intron 35.0%
AACATCCATGGTCGAATATT+TGG - chr7_4:44792757-44792776 Msa1156530:intron 35.0%
AGAATGAAGAAAAGACTCAC+TGG + chr7_4:44792889-44792908 None:intergenic 35.0%
CTTGTGTATTATGTGAACAC+AGG - chr7_4:44793292-44793311 Msa1156530:intron 35.0%
ATTCTGATGTCCAGTTATTG+AGG - chr7_4:44793575-44793594 Msa1156530:CDS 35.0%
TTCTGATGTCCAGTTATTGA+GGG - chr7_4:44793576-44793595 Msa1156530:CDS 35.0%
TTTACATGCAGTTTAGCTGA+AGG - chr7_4:44793715-44793734 Msa1156530:CDS 35.0%
!! AATTGTGATGGTGCTGTTGT+TGG + chr7_4:44790602-44790621 None:intergenic 40.0%
ACCATCACAATTCCTGTGAA+TGG - chr7_4:44790610-44790629 Msa1156530:three_prime_UTR 40.0%
TCCATTCACAGGAATTGTGA+TGG + chr7_4:44790614-44790633 None:intergenic 40.0%
CACATTCGAAAACCCTATTC+CGG - chr7_4:44790651-44790670 Msa1156530:three_prime_UTR 40.0%
GTAACCAATTCACTTTGTGG+AGG + chr7_4:44790805-44790824 None:intergenic 40.0%
TACTAGTCCTACTCTGTGAA+GGG + chr7_4:44790834-44790853 None:intergenic 40.0%
ATACTAGTCCTACTCTGTGA+AGG + chr7_4:44790835-44790854 None:intergenic 40.0%
CCAATCCTAACATCATTCCA+AGG + chr7_4:44790907-44790926 None:intergenic 40.0%
CCTTGGAATGATGTTAGGAT+TGG - chr7_4:44790904-44790923 Msa1156530:three_prime_UTR 40.0%
GCTTGAAGATCTTGATGCTT+TGG - chr7_4:44790933-44790952 Msa1156530:exon 40.0%
ACATGGCACCTTAACAGAAA+TGG + chr7_4:44790965-44790984 None:intergenic 40.0%
TTACATGGTTAAGTGGGAAG+TGG - chr7_4:44791079-44791098 Msa1156530:CDS 40.0%
GTTCAAAGTAGAAGCCTAGT+AGG - chr7_4:44791298-44791317 Msa1156530:CDS 40.0%
CAAACTACATGTGACCTACT+AGG + chr7_4:44791315-44791334 None:intergenic 40.0%
TTTGGGAGAGCTTATGAACA+CGG - chr7_4:44791414-44791433 Msa1156530:intron 40.0%
TTCTTCCATTAGGCTGAGTA+TGG - chr7_4:44791714-44791733 Msa1156530:CDS 40.0%
AAGTACCATACTCAGCCTAA+TGG + chr7_4:44791722-44791741 None:intergenic 40.0%
!! GTTGGTTCTGTTATATGGGT+TGG - chr7_4:44791959-44791978 Msa1156530:CDS 40.0%
GAGGTTACTCAATCCAAACA+AGG - chr7_4:44792007-44792026 Msa1156530:intron 40.0%
GAGTCAATGTGTCAGTATTG+TGG + chr7_4:44792224-44792243 None:intergenic 40.0%
TGTCACTGTAACTCATGTAG+AGG - chr7_4:44792402-44792421 Msa1156530:CDS 40.0%
GTCACTGTAACTCATGTAGA+GGG - chr7_4:44792403-44792422 Msa1156530:CDS 40.0%
TCGAGCGACAAATATGAAGT+TGG + chr7_4:44792458-44792477 None:intergenic 40.0%
! ACTTAAAGACCTATTGGCTG+AGG - chr7_4:44792633-44792652 Msa1156530:intron 40.0%
! CTTAAAGACCTATTGGCTGA+GGG - chr7_4:44792634-44792653 Msa1156530:intron 40.0%
AAATTCTACCCTCAGCCAAT+AGG + chr7_4:44792645-44792664 None:intergenic 40.0%
TATTAAGGAGTTCTCAAGGC+TGG + chr7_4:44792719-44792738 None:intergenic 40.0%
GGCATATTAAGGAGTTCTCA+AGG + chr7_4:44792723-44792742 None:intergenic 40.0%
TTGCTGTGGATGGCATATTA+AGG + chr7_4:44792734-44792753 None:intergenic 40.0%
TAATATGCCATCCACAGCAA+AGG - chr7_4:44792734-44792753 Msa1156530:intron 40.0%
ATCCATGGTCGAATATTTGG+AGG - chr7_4:44792760-44792779 Msa1156530:intron 40.0%
AACCTCCAAATATTCGACCA+TGG + chr7_4:44792765-44792784 None:intergenic 40.0%
GATGAATCGTGCGTTTGAAT+TGG - chr7_4:44792789-44792808 Msa1156530:intron 40.0%
GTAAGGAACTAATCCAGCAA+AGG + chr7_4:44792833-44792852 None:intergenic 40.0%
!! AACTGCTAAACAGGTTGATG+TGG - chr7_4:44793041-44793060 Msa1156530:intron 40.0%
!! ACTGCTAAACAGGTTGATGT+GGG - chr7_4:44793042-44793061 Msa1156530:intron 40.0%
ACATTGATAAGTGGCTGATC+TGG + chr7_4:44793117-44793136 None:intergenic 40.0%
GACGTACAGTGAAAGTGAAA+TGG + chr7_4:44793331-44793350 None:intergenic 40.0%
! TTTTTCATAGCCTTTGCCTC+TGG + chr7_4:44793353-44793372 None:intergenic 40.0%
GAGGCAAAGGCTATGAAAAA+TGG - chr7_4:44793353-44793372 Msa1156530:intron 40.0%
GAAGAGAAACAGCAATTAGC+TGG - chr7_4:44793477-44793496 Msa1156530:CDS 40.0%
AAACTTGTGCCCTCAATAAC+TGG + chr7_4:44793588-44793607 None:intergenic 40.0%
CCATGAGTATGAGCATCATA+AGG + chr7_4:44793863-44793882 None:intergenic 40.0%
CCTTATGATGCTCATACTCA+TGG - chr7_4:44793860-44793879 Msa1156530:five_prime_UTR 40.0%
!! ACGTAGAGTGTTGTGTTGTG+TGG + chr7_4:44790496-44790515 None:intergenic 45.0%
ACAGGGATTGTTCCATTCAC+AGG + chr7_4:44790625-44790644 None:intergenic 45.0%
! CGGAATAGGGTTTTCGAATG+TGG + chr7_4:44790653-44790672 None:intergenic 45.0%
! AACAGCTCTTTGGGAAGCAA+GGG - chr7_4:44790738-44790757 Msa1156530:three_prime_UTR 45.0%
TGCTCCTCCACAAAGTGAAT+TGG - chr7_4:44790798-44790817 Msa1156530:three_prime_UTR 45.0%
ACTAGTCCTACTCTGTGAAG+GGG + chr7_4:44790833-44790852 None:intergenic 45.0%
GGGATCCTTGGAATGATGTT+AGG - chr7_4:44790899-44790918 Msa1156530:three_prime_UTR 45.0%
GAAGATCTTGATGCTTTGGC+TGG - chr7_4:44790937-44790956 Msa1156530:CDS 45.0%
GGCTGGAACCATTTCTGTTA+AGG - chr7_4:44790954-44790973 Msa1156530:CDS 45.0%
!! AAAGGGGGGGAATTTTGACA+TGG + chr7_4:44790982-44791001 None:intergenic 45.0%
! CCTTGTTGTGCTATCCTCAT+CGG + chr7_4:44791861-44791880 None:intergenic 45.0%
! ATTCAAATCGAAGGCGTGTC+TGG + chr7_4:44792329-44792348 None:intergenic 45.0%
TCGCTCGAGACTCAAAAACT+GGG - chr7_4:44792470-44792489 Msa1156530:CDS 45.0%
TCGAGACTCAAAAACTGGGA+AGG - chr7_4:44792474-44792493 Msa1156530:CDS 45.0%
! AGTTTTTCGCGAGCAGTTTC+TGG + chr7_4:44792523-44792542 None:intergenic 45.0%
TAGAAGAATGCTGTCTCGGT+CGG + chr7_4:44792689-44792708 None:intergenic 45.0%
ACCGAGACAGCATTCTTCTA+AGG - chr7_4:44792689-44792708 Msa1156530:intron 45.0%
CCCTTAGAAGAATGCTGTCT+CGG + chr7_4:44792693-44792712 None:intergenic 45.0%
CCGAGACAGCATTCTTCTAA+GGG - chr7_4:44792690-44792709 Msa1156530:intron 45.0%
TCAACAGCTTATGCCTTTGC+TGG - chr7_4:44792817-44792836 Msa1156530:intron 45.0%
! TTACACTGCATTGATGGGAG+AGG - chr7_4:44792982-44793001 Msa1156530:intron 45.0%
!! AAGTTCGGTGTACAAAACGC+AGG + chr7_4:44793088-44793107 None:intergenic 45.0%
CTGATCTGGATCGTGAAGTT+CGG + chr7_4:44793103-44793122 None:intergenic 45.0%
TATGTTGCCTAAGCACGAGT+TGG + chr7_4:44793650-44793669 None:intergenic 45.0%
!! GTGATGGTGCTGTTGTTGGA+AGG + chr7_4:44790598-44790617 None:intergenic 50.0%
GAAAACCCTATTCCGGTCAC+CGG - chr7_4:44790658-44790677 Msa1156530:three_prime_UTR 50.0%
ACCGGAAACCCATCGCTTTA+TGG - chr7_4:44790689-44790708 Msa1156530:three_prime_UTR 50.0%
! GCCATAAAGCGATGGGTTTC+CGG + chr7_4:44790693-44790712 None:intergenic 50.0%
GAAACCCATCGCTTTATGGC+CGG - chr7_4:44790693-44790712 Msa1156530:three_prime_UTR 50.0%
AAACCCATCGCTTTATGGCC+GGG - chr7_4:44790694-44790713 Msa1156530:three_prime_UTR 50.0%
TCCGGTGACAACAGCTCTTT+GGG - chr7_4:44790729-44790748 Msa1156530:three_prime_UTR 50.0%
TCCCAAAGAGCTGTTGTCAC+CGG + chr7_4:44790733-44790752 None:intergenic 50.0%
! CAACAGCTCTTTGGGAAGCA+AGG - chr7_4:44790737-44790756 Msa1156530:three_prime_UTR 50.0%
! ACAGCTCTTTGGGAAGCAAG+GGG - chr7_4:44790739-44790758 Msa1156530:three_prime_UTR 50.0%
!! CTTTGTGGAGGAGCATCTCT+TGG + chr7_4:44790793-44790812 None:intergenic 50.0%
CTAGAACCCCTTCACAGAGT+AGG - chr7_4:44790824-44790843 Msa1156530:three_prime_UTR 50.0%
GGGAGCAATATAGGGATCCT+TGG - chr7_4:44790887-44790906 Msa1156530:three_prime_UTR 50.0%
GGAATAGCACTGTTCCGATG+AGG - chr7_4:44791844-44791863 Msa1156530:CDS 50.0%
CCGATGAGGATAGCACAACA+AGG - chr7_4:44791858-44791877 Msa1156530:CDS 50.0%
GGGCACTATTCTGTCATGAG+AGG + chr7_4:44792130-44792149 None:intergenic 50.0%
GTCGCTCGAGACTCAAAAAC+TGG - chr7_4:44792469-44792488 Msa1156530:CDS 50.0%
! TCTGGCGAAAGTCGATTCAC+TGG + chr7_4:44792505-44792524 None:intergenic 50.0%
! GGATGTTCCTTTGCTGTGGA+TGG + chr7_4:44792744-44792763 None:intergenic 50.0%
CCATGGATGTTCCTTTGCTG+TGG + chr7_4:44792748-44792767 None:intergenic 50.0%
CCACAGCAAAGGAACATCCA+TGG - chr7_4:44792745-44792764 Msa1156530:intron 50.0%
CACTTTCACTGTACGTCCAG+AGG - chr7_4:44793334-44793353 Msa1156530:intron 50.0%
CGTGCTTCTTCTTCTGTTGC+CGG + chr7_4:44793401-44793420 None:intergenic 50.0%
ATCGAAGCCAACTCGTGCTT+AGG - chr7_4:44793640-44793659 Msa1156530:CDS 50.0%
AACCCATCGCTTTATGGCCG+GGG - chr7_4:44790695-44790714 Msa1156530:three_prime_UTR 55.0%
ATCCCCGGCCATAAAGCGAT+GGG + chr7_4:44790700-44790719 None:intergenic 55.0%
ACCGGAGAATGGAACATCCC+CGG + chr7_4:44790715-44790734 None:intergenic 55.0%
GAGCTGTTGTCACCGGAGAA+TGG + chr7_4:44790726-44790745 None:intergenic 55.0%
CTCCGGTGACAACAGCTCTT+TGG - chr7_4:44790728-44790747 Msa1156530:three_prime_UTR 55.0%
!! TGTGGAGGAGCATCTCTTGG+TGG + chr7_4:44790790-44790809 None:intergenic 55.0%
! CACATGTGTCGGTGTCCTGT+CGG - chr7_4:44792294-44792313 Msa1156530:intron 55.0%
!! TGTCGGTGTCCTGTCGGTTT+CGG - chr7_4:44792300-44792319 Msa1156530:intron 55.0%
AATGCTGTCTCGGTCGGCTA+AGG + chr7_4:44792683-44792702 None:intergenic 55.0%
AACCTCGCTAGATCGCAGCT+CGG + chr7_4:44793166-44793185 None:intergenic 55.0%
CACTGTACGTCCAGAGGCAA+AGG - chr7_4:44793340-44793359 Msa1156530:intron 55.0%
! AAGCGATGGGTTTCCGGTCG+CGG + chr7_4:44790687-44790706 None:intergenic 60.0%
CATCCCCGGCCATAAAGCGA+TGG + chr7_4:44790701-44790720 None:intergenic 60.0%
GCCGGGGATGTTCCATTCTC+CGG - chr7_4:44790711-44790730 Msa1156530:three_prime_UTR 60.0%
CGACAGGACACCGACACATG+TGG + chr7_4:44792296-44792315 None:intergenic 60.0%
GTCTGGTGTCCGAAACCGAC+AGG + chr7_4:44792312-44792331 None:intergenic 60.0%
ACCTCGCTAGATCGCAGCTC+GGG + chr7_4:44793165-44793184 None:intergenic 60.0%
GGGAGCCGGTGACCGGAATA+GGG + chr7_4:44790666-44790685 None:intergenic 65.0%
! AGCGATGGGTTTCCGGTCGC+GGG + chr7_4:44790686-44790705 None:intergenic 65.0%
CTGTCTCGGTCGGCTAAGGC+TGG + chr7_4:44792679-44792698 None:intergenic 65.0%
ACCCGAGCTGCGATCTAGCG+AGG - chr7_4:44793161-44793180 Msa1156530:intron 65.0%
CGGGAGCCGGTGACCGGAAT+AGG + chr7_4:44790667-44790686 None:intergenic 70.0%
GGGTTTCCGGTCGCGGGAGC+CGG + chr7_4:44790680-44790699 None:intergenic 75.0%
! CGGTCGCGGGAGCCGGTGAC+CGG + chr7_4:44790673-44790692 None:intergenic 80.0%
!!! CGGTCACCGGCTCCCGCGAC+CGG - chr7_4:44790671-44790690 Msa1156530:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44790484 44793928 44790484 ID=Msa1156530;Name=Msa1156530
chr7_4 mRNA 44790484 44793928 44790484 ID=Msa1156530-mRNA-1;Parent=Msa1156530;Name=Msa1156530-mRNA-1;_AED=0.17;_eAED=0.17;_QI=93|1|1|1|1|1|5|453|444
chr7_4 exon 44790484 44791098 44790484 ID=Msa1156530-mRNA-1:exon:11605;Parent=Msa1156530-mRNA-1
chr7_4 exon 44791230 44791358 44791230 ID=Msa1156530-mRNA-1:exon:11604;Parent=Msa1156530-mRNA-1
chr7_4 exon 44791524 44791990 44791524 ID=Msa1156530-mRNA-1:exon:11603;Parent=Msa1156530-mRNA-1
chr7_4 exon 44792384 44792561 44792384 ID=Msa1156530-mRNA-1:exon:11602;Parent=Msa1156530-mRNA-1
chr7_4 exon 44793437 44793928 44793437 ID=Msa1156530-mRNA-1:exon:11601;Parent=Msa1156530-mRNA-1
chr7_4 five_prime_UTR 44793836 44793928 44793836 ID=Msa1156530-mRNA-1:five_prime_utr;Parent=Msa1156530-mRNA-1
chr7_4 CDS 44793437 44793835 44793437 ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4 CDS 44792384 44792561 44792384 ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4 CDS 44791524 44791990 44791524 ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4 CDS 44791230 44791358 44791230 ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4 CDS 44790937 44791098 44790937 ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4 three_prime_UTR 44790484 44790936 44790484 ID=Msa1156530-mRNA-1:three_prime_utr;Parent=Msa1156530-mRNA-1
Gene Sequence

>Msa1156530

ATGGATTTGAATGTTTCTCCTTCCAACAACAGCACCATCACAATTCCTGTGAATGGAACAATCCCTGTTTCATCCACATTCGAAAACCCTATTCCGGTCACCGGCTCCCGCGACCGGAAACCCATCGCTTTATGGCCGGGGATGTTCCATTCTCCGGTGACAACAGCTCTTTGGGAAGCAAGGGGCAAAATCTTTGAGAGACTTCTTGATCCACCAAGAGATGCTCCTCCACAAAGTGAATTGGTTACTAGAACCCCTTCACAGAGTAGGACTAGTATTCTTTACAATTTTTCATCTGATTTTGTTCTTAGGGAGCAATATAGGGATCCTTGGAATGATGTTAGGATTGGAAAGTTGCTTGAAGATCTTGATGCTTTGGCTGGAACCATTTCTGTTAAGCACTGTTCCGATGAGGATAGCACAACAAGGCCACTTATACTTGTTACTGCTTCTGTTGATAAGATTGTACTAAAGAAACCAATTACTGTTAACATTGATCTCACAATAGTTGGTTCTGTTATATGGGTTGGGCGCTCCTCAATAGAAATTCAACTCGAGGTTACTCAATCCAAACAAGAGGGCAGTGATTCAGACTCAGTAGTACTAACAGCCAACTTCATATTTGTCGCTCGAGACTCAAAAACTGGGAAGGCTGCTCCAGTGAATCGACTTTCGCCAGAAACTGCTCGCGAAAAACTTCTTTTTGAACAAGCTGAAGCAAGAAACAATTTGAAAAAAAGGAAAAGAGGAGGTGAAAAGAAAGACCATGAGAATGAGGAAGAAAAAAAACTTAAAGACCTATTGGCTGAGGGTAGAATTTTCTGTGACATGCCAGCCTTAGCCGACCGAGACAGCATTCTTCTAAGGGATACCAGCCTTGAGAACTCCTTAATATGCCATCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGAATCGTGCGTTTGAATTGGCTTTCTCAACAGCTTATGCCTTTGCTGGATTAGTTCCTTACTTTCTAGAAGTTGATCATGTTGATTTTCTCAGACCAGTTGATGTGGGCGATTTCTTGCGTCTCAAATCCTGCGTTTTGTACACCGAACTTCACGATCCAGATCAGCCACTTATCAATGTTGAAGTTGTTGCTCATGTTACAAGACCCGAGCTGCGATCTAGCGAGGTATCAAATACTTTCCATTTCACTTTCACTGTACGTCCAGAGGCAAAGGCTATGAAAAATGGATTTAAACTTCGAAATGTAGTACCGGCAACAGAAGAAGAAGCACGCCGTATATTAGAGCGTATAGATGCTGACAACTTGAATGAATTCTTCAGAACATAA

Protein sequence

>Msa1156530

MDLNVSPSNNSTITIPVNGTIPVSSTFENPIPVTGSRDRKPIALWPGMFHSPVTTALWEARGKIFERLLDPPRDAPPQSELVTRTPSQSRTSILYNFSSDFVLREQYRDPWNDVRIGKLLEDLDALAGTISVKHCSDEDSTTRPLILVTASVDKIVLKKPITVNIDLTIVGSVIWVGRSSIEIQLEVTQSKQEGSDSDSVVLTANFIFVARDSKTGKAAPVNRLSPETAREKLLFEQAEARNNLKKRKRGGEKKDHENEEEKKLKDLLAEGRIFCDMPALADRDSILLRDTSLENSLICHPQQRNIHGRIFGGFLMNRAFELAFSTAYAFAGLVPYFLEVDHVDFLRPVDVGDFLRLKSCVLYTELHDPDQPLINVEVVAHVTRPELRSSEVSNTFHFTFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRT*