AlfalfaGEDB | Msa1156530

M. sativa cultivar zhongmu-4 / Msa1156530

KEGG: K17361
GO: -
PFAM: PF03061.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156530	XP_003624248.1	99.324	444	3	0	1	444	1	444	0.0	902

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156530	sp\|S4TDL2\|TE2_HUMLU	79.091	440	82	4	1	436	1	434	0.0	715

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156530	A2Q5W7	99.324	444	3	0	1	444	1	444	0.0	902

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1156530	0.808793	2.601318e-50	-8.615850e-47
Msa0000610	Msa1156530	0.811677	6.211127e-51	-8.615850e-47
Msa0001040	Msa1156530	0.818860	1.572409e-52	-8.615850e-47
Msa0001510	Msa1156530	0.826090	3.282073e-54	-8.615850e-47
Msa0002110	Msa1156530	0.801157	1.027945e-48	-8.615850e-47
Msa0002690	Msa1156530	0.825600	4.289929e-54	-8.615850e-47
Msa0002700	Msa1156530	0.830975	2.169790e-55	-8.615850e-47
Msa0005500	Msa1156530	0.826114	3.239353e-54	-8.615850e-47
Msa0007570	Msa1156530	0.833274	5.858225e-56	-8.615850e-47
Msa0007810	Msa1156530	0.844934	5.556409e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156530	MtrunA17_Chr7g0249951	99.324	444	3	0	1	444	1	444	0.0	902
Msa1156530	MtrunA17_Chr4g0045891	66.265	415	132	5	24	437	43	450	0.0	566

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156530	AT5G48370.1	79.572	421	83	2	21	439	7	426	0.0	680
Msa1156530	AT5G48370.2	79.714	419	83	2	21	438	7	424	0.0	679
Msa1156530	AT2G30720.1	65.000	420	140	4	18	436	36	449	0.0	560
Msa1156530	AT5G48370.3	80.323	310	60	1	130	438	5	314	7.25e-180	505

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Find 126 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATCGCTTTATGGCC+GGG	0.471066	7_4:-44793696	Msa1156530:CDS
AAACTTGTGCCCTCAATAAC+TGG	0.348495	7_4:+44790805	None:intergenic
AAAGAAAGACCATGAGAATG+AGG	0.563142	7_4:-44791790	Msa1156530:CDS
AAATTCTACCCTCAGCCAAT+AGG	0.440959	7_4:+44791748	None:intergenic
AACAGCTCTTTGGGAAGCAA+GGG	0.531781	7_4:-44793652	Msa1156530:CDS
AACATCCATGGTCGAATATT+TGG	0.228159	7_4:-44791633	Msa1156530:CDS
AACATTGATCTCACAATAGT+TGG	0.381992	7_4:-44792449	Msa1156530:CDS
AACCCATCGCTTTATGGCCG+GGG	0.525718	7_4:-44793695	Msa1156530:CDS
AACCTCCAAATATTCGACCA+TGG	0.639125	7_4:+44791628	None:intergenic
AACCTCGCTAGATCGCAGCT+CGG	0.570253	7_4:+44791227	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCTAAAAAAAGGGG+GGG	+	chr7_4:44790995-44791014	None:intergenic	30.0%
GTCAAGACTTCATGAAAATA+AGG	+	chr7_4:44791637-44791656	None:intergenic	30.0%
AACATTGATCTCACAATAGT+TGG	-	chr7_4:44791941-44791960	Msa1156530:CDS	30.0%
CAAACAAGGTACATTTCTTA+GGG	-	chr7_4:44792021-44792040	Msa1156530:intron	30.0%
ACACTAACAATTCAAATCGA+AGG	+	chr7_4:44792338-44792357	None:intergenic	30.0%
TTGAAAAAAAGGAAAAGAGG+AGG	-	chr7_4:44792574-44792593	Msa1156530:intron	30.0%
TTCAGTAAAAAGGGCAAAAA+CGG	+	chr7_4:44792958-44792977	None:intergenic	30.0%
ACAACTTCAACATTGATAAG+TGG	+	chr7_4:44793126-44793145	None:intergenic	30.0%
TAAACTTCGAAATGTAGTAC+CGG	-	chr7_4:44793379-44793398	Msa1156530:intron	30.0%
CATCTATACGCTCTAATATA+CGG	+	chr7_4:44793424-44793443	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	44790484	44793928	44790484	ID=Msa1156530;Name=Msa1156530
chr7_4	mRNA	44790484	44793928	44790484	ID=Msa1156530-mRNA-1;Parent=Msa1156530;Name=Msa1156530-mRNA-1;_AED=0.17;_eAED=0.17;_QI=93\|1\|1\|1\|1\|1\|5\|453\|444
chr7_4	exon	44790484	44791098	44790484	ID=Msa1156530-mRNA-1:exon:11605;Parent=Msa1156530-mRNA-1
chr7_4	exon	44791230	44791358	44791230	ID=Msa1156530-mRNA-1:exon:11604;Parent=Msa1156530-mRNA-1
chr7_4	exon	44791524	44791990	44791524	ID=Msa1156530-mRNA-1:exon:11603;Parent=Msa1156530-mRNA-1
chr7_4	exon	44792384	44792561	44792384	ID=Msa1156530-mRNA-1:exon:11602;Parent=Msa1156530-mRNA-1
chr7_4	exon	44793437	44793928	44793437	ID=Msa1156530-mRNA-1:exon:11601;Parent=Msa1156530-mRNA-1
chr7_4	five_prime_UTR	44793836	44793928	44793836	ID=Msa1156530-mRNA-1:five_prime_utr;Parent=Msa1156530-mRNA-1
chr7_4	CDS	44793437	44793835	44793437	ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4	CDS	44792384	44792561	44792384	ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4	CDS	44791524	44791990	44791524	ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4	CDS	44791230	44791358	44791230	ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4	CDS	44790937	44791098	44790937	ID=Msa1156530-mRNA-1:cds;Parent=Msa1156530-mRNA-1
chr7_4	three_prime_UTR	44790484	44790936	44790484	ID=Msa1156530-mRNA-1:three_prime_utr;Parent=Msa1156530-mRNA-1

Gene Sequence

>Msa1156530

ATGGATTTGAATGTTTCTCCTTCCAACAACAGCACCATCACAATTCCTGTGAATGGAACAATCCCTGTTTCATCCACATTCGAAAACCCTATTCCGGTCACCGGCTCCCGCGACCGGAAACCCATCGCTTTATGGCCGGGGATGTTCCATTCTCCGGTGACAACAGCTCTTTGGGAAGCAAGGGGCAAAATCTTTGAGAGACTTCTTGATCCACCAAGAGATGCTCCTCCACAAAGTGAATTGGTTACTAGAACCCCTTCACAGAGTAGGACTAGTATTCTTTACAATTTTTCATCTGATTTTGTTCTTAGGGAGCAATATAGGGATCCTTGGAATGATGTTAGGATTGGAAAGTTGCTTGAAGATCTTGATGCTTTGGCTGGAACCATTTCTGTTAAGCACTGTTCCGATGAGGATAGCACAACAAGGCCACTTATACTTGTTACTGCTTCTGTTGATAAGATTGTACTAAAGAAACCAATTACTGTTAACATTGATCTCACAATAGTTGGTTCTGTTATATGGGTTGGGCGCTCCTCAATAGAAATTCAACTCGAGGTTACTCAATCCAAACAAGAGGGCAGTGATTCAGACTCAGTAGTACTAACAGCCAACTTCATATTTGTCGCTCGAGACTCAAAAACTGGGAAGGCTGCTCCAGTGAATCGACTTTCGCCAGAAACTGCTCGCGAAAAACTTCTTTTTGAACAAGCTGAAGCAAGAAACAATTTGAAAAAAAGGAAAAGAGGAGGTGAAAAGAAAGACCATGAGAATGAGGAAGAAAAAAAACTTAAAGACCTATTGGCTGAGGGTAGAATTTTCTGTGACATGCCAGCCTTAGCCGACCGAGACAGCATTCTTCTAAGGGATACCAGCCTTGAGAACTCCTTAATATGCCATCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGAATCGTGCGTTTGAATTGGCTTTCTCAACAGCTTATGCCTTTGCTGGATTAGTTCCTTACTTTCTAGAAGTTGATCATGTTGATTTTCTCAGACCAGTTGATGTGGGCGATTTCTTGCGTCTCAAATCCTGCGTTTTGTACACCGAACTTCACGATCCAGATCAGCCACTTATCAATGTTGAAGTTGTTGCTCATGTTACAAGACCCGAGCTGCGATCTAGCGAGGTATCAAATACTTTCCATTTCACTTTCACTGTACGTCCAGAGGCAAAGGCTATGAAAAATGGATTTAAACTTCGAAATGTAGTACCGGCAACAGAAGAAGAAGCACGCCGTATATTAGAGCGTATAGATGCTGACAACTTGAATGAATTCTTCAGAACATAA

Protein sequence

>Msa1156530

MDLNVSPSNNSTITIPVNGTIPVSSTFENPIPVTGSRDRKPIALWPGMFHSPVTTALWEARGKIFERLLDPPRDAPPQSELVTRTPSQSRTSILYNFSSDFVLREQYRDPWNDVRIGKLLEDLDALAGTISVKHCSDEDSTTRPLILVTASVDKIVLKKPITVNIDLTIVGSVIWVGRSSIEIQLEVTQSKQEGSDSDSVVLTANFIFVARDSKTGKAAPVNRLSPETAREKLLFEQAEARNNLKKRKRGGEKKDHENEEEKKLKDLLAEGRIFCDMPALADRDSILLRDTSLENSLICHPQQRNIHGRIFGGFLMNRAFELAFSTAYAFAGLVPYFLEVDHVDFLRPVDVGDFLRLKSCVLYTELHDPDQPLINVEVVAHVTRPELRSSEVSNTFHFTFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRT*